RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SEC31B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000051984

Ensembl transcript IDs: ENSMUST00000063632.14, ENSMUST00000111985.2, ENSMUST00000165758.2

Found 235 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CTTGGGGCTCCAGGAGGAGGCAGGGTCGCACTGGAGACTAGGGGCTaGGGTAGCAGGGCCTGTTGTGGCTCAGGGCCAAGGCTCCTAAGC +
Preference number: 1 (lower is better)
Translates to: LGAPGGGRVALETRG*GSRACCGSGPRLLS
Trigger: GCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000165758.2
3UTR CCA 90 bp GCAGGCTGCATTCTCTTGGGGCTCCAGGAGGAGGCAGGGTCGCACTaGAGACTAGGGGCTGAGGTAGCAGGGCCTGTTGTGGCTCAGGGC +
Preference number: 1 (lower is better)
Translates to: AGCILLGLQEEAGSH*RLGAEVAGPVVAQG
Trigger: GCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000165758.2
3UTR GCA 90 bp GGCAGCTCCTTCTCTGTCCTCTCAGGAGGCAGTGGCTGGAGTTGCTaGAGGCTGCATTCTCTTGGGGCTCCAGGAGGAGGCAGGGTCGCA +
Preference number: 1 (lower is better)
Translates to: GSSFSVLSGGSGWSC*RLHSLGAPGGGRVA
Trigger: TGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAGCAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165758.2
3UTR CCA 90 bp TGCTCTGGGGGCAGCTCCTTCTCTGTCCTCTCAGGAGGCAGTGGCTaGAGTTGCTGCAGGCTGCATTCTCTTGGGGCTCCAGGAGGAGGC +
Preference number: 1 (lower is better)
Translates to: CSGGSSFSVLSGGSG*SCCRLHSLGAPGGG
Trigger: GCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAGCAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000165758.2
3UTR TCA 90 bp GGTGGAAGCACCAGGGTAAGTCCCAGGTGGCCGGGCATAAAGGAATaGGAAGGAGACACTCAGCTGGCGTGGGGCCAAGCCCCCAGTGTC +
Preference number: 1 (lower is better)
Translates to: GGSTRVSPRWPGIKE*EGDTQLAWGQAPSV
Trigger: GACACTGGGGGCTTGGCCCCACGCCAGCTGAGTGTCTCCTTCTCATTCCTTTATGCCCGGCCACCTGGGACTTACCCTGGTGCTTCCACC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
3UTR GCA 90 bp CCTTCTCTGTCCTCTCAGGAGGCAGTGGCTGGAGTTGCTGCAGGCTaGATTCTCTTGGGGCTCCAGGAGGAGGCAGGGTCGCACTGGAGA +
Preference number: 1 (lower is better)
Translates to: PSLSSQEAVAGVAAG*ILLGLQEEAGSHWR
Trigger: TCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAGCAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165758.2
3UTR CAA 90 bp TCCTCTCAGGAGGCAGTGGCTGGAGTTGCTGCAGGCTGCATTCTCTaGGGGCTCCAGGAGGAGGCAGGGTCGCACTGGAGACTAGGGGCT +
Preference number: 2 (lower is better)
Translates to: SSQEAVAGVAAGCIL*GLQEEAGSHWRLGA
Trigger: AGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAGCAACTCCAGCCACTGCCTCCTGAGAGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000165758.2
3UTR-3UTR TCA 90 bp GGAGGCAGTGGCTGGAGTTGCTGCAGGCTGCATTCTCTTGGGGCTCCAGGAGGACTGGAGACTAGGGGCTaGGGTAGCAGGGCCTGTTGT +
Preference number: 2 (lower is better)
Translates to: GGSGWSCCRLHSLGAPGGLETRG*GSRACC
Trigger: ACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAG...TCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAGCAACTCCAGCCACTGCCTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000165758.2
3UTR-3UTR TCA 90 bp TACAGACATTCTAGGCGGCGGGCTGCCTCCTCCAGCTTCCTTTTTGTTTTAAGGCTGTCCTTCACGCACTaGTGCTCTGGGGGCAGCTCC +
Preference number: 2 (lower is better)
Translates to: YRHSRRRAASSSFLFVLRLSFTH*CSGGSS
Trigger: GGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAG...CCTTAAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGCCGCCTAGAATGTCTGTA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000165758.2
3UTR-3UTR GCA 90 bp TCAGGGAACAGCGCTGAAGGAGTGCCTCAAAGCTGTCCTTCACGCACTGATGCTGGAGTTGCTGCAGGCTaGATTCTCTTGGGGCTCCAG +
Preference number: 2 (lower is better)
Translates to: SGNSAEGVPQSCPSRTDAGVAAG*ILLGLQ
Trigger: CTGGAGCCCCAAGAGAATGCAGCCTGCAGCAACTCC...AGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165758.2
3UTR-3UTR CCA 90 bp CATGTGAACAGAATGCCCCAGGTTAGACACTCTGGCGCAGACCCTGCTGGGCTGCCAGTGTCACATACCTaGCAGCAAGGGAAGAGATTG +
Preference number: 2 (lower is better)
Translates to: HVNRMPQVRHSGADPAGLPVSHT*QQGKRL
Trigger: CAATCTCTTCCCTTGCTGCCAGGTATGTGACACTGG...CAGCCCAGCAGGGTCTGCGCCAGAGTGTCTAACCTGGGGCATTCTGTTCACATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
3UTR-3UTR CCA 90 bp TACAGACATTCTAGGCGGCGGGCTGCCTCCTCCAGCTTCCTTTTTGTTTTAAGGCAGGCTGCATTCTCTTaGGGCTCCAGGAGGAGGCAG +
Preference number: 2 (lower is better)
Translates to: YRHSRRRAASSSFLFVLRQAAFS*GSRRRQ
Trigger: CTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTG...CCTTAAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGCCGCCTAGAATGTCTGTA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000165758.2
3UTR-3UTR CCA 90 bp AAAGCTTCTCATACAGACATTCTAGGCGGCGGGCTGCCTCCTCCAGCTTCCTTTTCAGGAGGCAGTGGCTaGAGTTGCTGCAGGCTGCAT +
Preference number: 2 (lower is better)
Translates to: KASHTDILGGGLPPPASFSGGSG*SCCRLH
Trigger: ATGCAGCCTGCAGCAACTCCAGCCACTGCCTCCTGA...AAAGGAAGCTGGAGGAGGCAGCCCGCCGCCTAGAATGTCTGTATGAGAAGCTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165758.2
3UTR-3UTR CCA 90 bp GAGTGCCTCAAAGCTGTCCTTCACGCACTGATGCTCTGGGGGCAGCTCCTTCTCAAGCGGAGCTGTAATTaGTGCTGGAGGCATGAATGT +
Preference number: 2 (lower is better)
Translates to: ECLKAVLHALMLWGQLLLKRSCN*CWRHEC
Trigger: ACATTCATGCCTCCAGCACCAATTACAGCTCCGCTT...GAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000165758.2
3UTR-3UTR CCA 90 bp AAGCACCAGGGTAAGTCCCAGGTGGCCGGGCATAAAGGAATGAGAAGGAGACACAGCAAGGGAAGAGATTaGGGGAAATACACACTCTGT +
Preference number: 2 (lower is better)
Translates to: KHQGKSQVAGHKGMRRRHSKGRD*GKYTLC
Trigger: ACAGAGTGTGTATTTCCCCCAATCTCTTCCCTTGCT...GTGTCTCCTTCTCATTCCTTTATGCCCGGCCACCTGGGACTTACCCTGGTGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
3UTR TCA 72 bp CCAGGAGGAGGCAGGGTCGCACTGGAGACTAGGGGCTaGGGTAGCAGGGCCTGTTGTGGCTCAGGGCCAAGG +
Preference number: 3 (lower is better)
Translates to: PGGGRVALETRG*GSRACCGSGPR
Trigger: CCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165758.2
3UTR GCA 72 bp TCCTCTCAGGAGGCAGTGGCTGGAGTTGCTGCAGGCTaGATTCTCTTGGGGCTCCAGGAGGAGGCAGGGTCG +
Preference number: 3 (lower is better)
Translates to: SSQEAVAGVAAG*ILLGLQEEAGS
Trigger: CGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAGCAACTCCAGCCACTGCCTCCTGAGAGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165758.2
3UTR CCA 72 bp ATTCTCTTGGGGCTCCAGGAGGAGGCAGGGTCGCACTaGAGACTAGGGGCTGAGGTAGCAGGGCCTGTTGTG +
Preference number: 3 (lower is better)
Translates to: ILLGLQEEAGSH*RLGAEVAGPVV
Trigger: CACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000165758.2
3UTR CCA 72 bp TGGGGGCAGCTCCTTCTCTGTCCTCTCAGGAGGCAGTaGCTGGAGTTGCTGCAGGCTGCATTCTCTTGGGGC +
Preference number: 3 (lower is better)
Translates to: WGQLLLCPLRRQ*LELLQAAFSWG
Trigger: GCCCCAAGAGAATGCAGCCTGCAGCAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000165758.2
3UTR TCA 72 bp ACCAGGGTAAGTCCCAGGTGGCCGGGCATAAAGGAATaGGAAGGAGACACTCAGCTGGCGTGGGGCCAAGCC +
Preference number: 3 (lower is better)
Translates to: TRVSPRWPGIKE*EGDTQLAWGQA
Trigger: GGCTTGGCCCCACGCCAGCTGAGTGTCTCCTTCTCATTCCTTTATGCCCGGCCACCTGGGACTTACCCTGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
3UTR GCA 72 bp TTCTCTGTCCTCTCAGGAGGCAGTGGCTGGAGTTGCTaGAGGCTGCATTCTCTTGGGGCTCCAGGAGGAGGC +
Preference number: 3 (lower is better)
Translates to: FSVLSGGSGWSC*RLHSLGAPGGG
Trigger: GCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAGCAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165758.2
3UTR CCA 72 bp GGCAGCTCCTTCTCTGTCCTCTCAGGAGGCAGTGGCTaGAGTTGCTGCAGGCTGCATTCTCTTGGGGCTCCA +
Preference number: 3 (lower is better)
Translates to: GSSFSVLSGGSG*SCCRLHSLGAP
Trigger: TGGAGCCCCAAGAGAATGCAGCCTGCAGCAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165758.2
3UTR GCA 72 bp TCCTTCTCTGTCCTCTCAGGAGGCAGTGGCTGGAGTTaGTGCAGGCTGCATTCTCTTGGGGCTCCAGGAGGA +
Preference number: 3 (lower is better)
Translates to: SFSVLSGGSGWS*CRLHSLGAPGG
Trigger: TCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAGCAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165758.2
3UTR CCA 72 bp GAGTGCCTCAAAGCTGTCCTTCACGCACTGATGCTCTaGGGGCAGCTCCTTCTCTGTCCTCTCAGGAGGCAG +
Preference number: 3 (lower is better)
Translates to: ECLKAVLHALML*GQLLLCPLRRQ
Trigger: CTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165758.2
3UTR-3UTR CAA 90 bp AAGCACCAGGGTAAGTCCCAGGTGGCCGGGCATAAAGGAATGAGAAGGAGACACCAGCAAGGGAAGAGATaGGGGGAAATACACACTCTG +
Preference number: 3 (lower is better)
Translates to: KHQGKSQVAGHKGMRRRHQQGKR*GEIHTL
Trigger: CAGAGTGTGTATTTCCCCCAATCTCTTCCCTTGCTG...GTGTCTCCTTCTCATTCCTTTATGCCCGGCCACCTGGGACTTACCCTGGTGCTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
3UTR TCA 72 bp CTGGGCTGCTACATTAGAGAGAGTAAGGTTCAACTCTaGGCATCACCTCTCAGGTGGAAGCACCAGGGTAAG +
Preference number: 3 (lower is better)
Translates to: LGCYIRESKVQL*ASPLRWKHQGK
Trigger: CTTACCCTGGTGCTTCCACCTGAGAGGTGATGCTCAGAGTTGAACCTTACTCTCTCTAATGTAGCAGCCCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
3UTR TCA 72 bp CTAATAATAGCACTGTTTACTCTCTCGGAAGCCATGTaGACAGAATGCCCCAGGTTAGACACTCTGGCGCAG +
Preference number: 3 (lower is better)
Translates to: LIIALFTLSEAM*TECPRLDTLAQ
Trigger: CTGCGCCAGAGTGTCTAACCTGGGGCATTCTGTTCACATGGCTTCCGAGAGAGTAAACAGTGCTATTATTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR GCA 90 bp CATAAAGGAATGAGAAGGAGACACTCAGCTGGCGTGGGGCCAAGCCCCCAGTGTCTGCAGCCCGCCACCTaGGCATGCACCGCGAGGCCC +
Preference number: 4 (lower is better)
Translates to: HKGMRRRHSAGVGPSPQCLQPAT*ACTARP
Trigger: GGGCCTCGCGGTGCATGCGCAGGTGGCGGGCTGCAG...ACACTGGGGGCTTGGCCCCACGCCAGCTGAGTGTCTCCTTCTCATTCCTTTATG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR GCA 90 bp CTCAGGTGGAAGCACCAGGGTAAGTCCCAGGTGGCCGGGCATAAAGGAATGAGACCCGCCACCTGCGCATaGACCGCGAGGCCCTGCTCA +
Preference number: 4 (lower is better)
Translates to: LRWKHQGKSQVAGHKGMRPATCA*TARPCS
Trigger: TGAGCAGGGCCTCGCGGTGCATGCGCAGGTGGCGGG...TCTCATTCCTTTATGCCCGGCCACCTGGGACTTACCCTGGTGCTTCCACCTGAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR TCA 90 bp CTCAGGTGGAAGCACCAGGGTAAGTCCCAGGTGGCCGGGCATAAAGGAATGAGAGCCTTGCCGCTGGGGTaGGCGGAAGCCAGGATGTGC +
Preference number: 4 (lower is better)
Translates to: LRWKHQGKSQVAGHKGMRALPLG*AEARMC
Trigger: GCACATCCTGGCTTCCGCTCACCCCAGCGGCAAGGC...TCTCATTCCTTTATGCCCGGCCACCTGGGACTTACCCTGGTGCTTCCACCTGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR TCA 90 bp GGAGGCAGTGGCTGGAGTTGCTGCAGGCTGCATTCTCTTGGGGCTCCAGGAGGAATCACTGATGACGGCTaGGCTGTGGTCCTCGGCCTC +
Preference number: 4 (lower is better)
Translates to: GGSGWSCCRLHSLGAPGGITDDG*AVVLGL
Trigger: GAGGCCGAGGACCACAGCTCAGCCGTCATCAGTGAT...TCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAGCAACTCCAGCCACTGCCTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165758.2
CDS-3UTR TCA 90 bp CACCTCTCAGGTGGAAGCACCAGGGTAAGTCCCAGGTGGCCGGGCATAAAGGAAGCTCCAGGCTCCTGCTaGGGACTGTCACCTGCTCCA +
Preference number: 4 (lower is better)
Translates to: HLSGGSTRVSPRWPGIKEAPGSC*GLSPAP
Trigger: TGGAGCAGGTGACAGTCCTCAGCAGGAGCCTGGAGC...TTCCTTTATGCCCGGCCACCTGGGACTTACCCTGGTGCTTCCACCTGAGAGGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR TCA 90 bp CATGTGAACAGAATGCCCCAGGTTAGACACTCTGGCGCAGACCCTGCTGGGCTGGACCCTGTGGTCACTTaGGCCCTGAGAAGGGCTGGG +
Preference number: 4 (lower is better)
Translates to: HVNRMPQVRHSGADPAGLDPVVT*ALRRAG
Trigger: CCCAGCCCTTCTCAGGGCTCAAGTGACCACAGGGTC...CAGCCCAGCAGGGTCTGCGCCAGAGTGTCTAACCTGGGGCATTCTGTTCACATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR CCA 90 bp CATGTGAACAGAATGCCCCAGGTTAGACACTCTGGCGCAGACCCTGCTGGGCTGCAGAGGGTTGGGACCTaGTGGTCCCACAGGAGGCAG +
Preference number: 4 (lower is better)
Translates to: HVNRMPQVRHSGADPAGLQRVGT*WSHRRQ
Trigger: CTGCCTCCTGTGGGACCACCAGGTCCCAACCCTCTG...CAGCCCAGCAGGGTCTGCGCCAGAGTGTCTAACCTGGGGCATTCTGTTCACATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR TCA 90 bp CATGTGAACAGAATGCCCCAGGTTAGACACTCTGGCGCAGACCCTGCTGGGCTGATCACTGATGACGGCTaGGCTGTGGTCCTCGGCCTC +
Preference number: 4 (lower is better)
Translates to: HVNRMPQVRHSGADPAGLITDDG*AVVLGL
Trigger: GAGGCCGAGGACCACAGCTCAGCCGTCATCAGTGAT...CAGCCCAGCAGGGTCTGCGCCAGAGTGTCTAACCTGGGGCATTCTGTTCACATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR TCA 90 bp AGGTGGAAGCACCAGGGTAAGTCCCAGGTGGCCGGGCATAAAGGAATGAGAAGGTGGGCTGGGAGGGGCTaGAGGGCATCACTGATGACG +
Preference number: 4 (lower is better)
Translates to: RWKHQGKSQVAGHKGMRRWAGRG*RASLMT
Trigger: CGTCATCAGTGATGCCCTTCAGCCCCTCCCAGCCCA...CCTTCTCATTCCTTTATGCCCGGCCACCTGGGACTTACCCTGGTGCTTCCACCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR TCA 90 bp GGTAAGTCCCAGGTGGCCGGGCATAAAGGAATGAGAAGGAGACACTCAGCTGGCCTGTCCTTCACGCACTaGTGCTCTGGGGGCAGCTCC +
Preference number: 4 (lower is better)
Translates to: GKSQVAGHKGMRRRHSAGLSFTH*CSGGSS
Trigger: GGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAG...GCCAGCTGAGTGTCTCCTTCTCATTCCTTTATGCCCGGCCACCTGGGACTTACC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR GCA 90 bp CATAAAGGAATGAGAAGGAGACACTCAGCTGGCGTGGGGCCAAGCCCCCAGTGTGCCCTGCCTCCCTCCTaGTCCATTCGAGTTCCCAGC +
Preference number: 4 (lower is better)
Translates to: HKGMRRRHSAGVGPSPQCALPPS*SIRVPS
Trigger: GCTGGGAACTCGAATGGAGCAGGAGGGAGGCAGGGC...ACACTGGGGGCTTGGCCCCACGCCAGCTGAGTGTCTCCTTCTCATTCCTTTATG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR GCA 90 bp CATGTGAACAGAATGCCCCAGGTTAGACACTCTGGCGCAGACCCTGCTGGGCTGGCCAGGAAGAGGCCATaGGCCACAGAATCCAGCTGG +
Preference number: 4 (lower is better)
Translates to: HVNRMPQVRHSGADPAGLARKRP*ATESSW
Trigger: CCAGCTGGATTCTGTGGCGCATGGCCTCTTCCTGGC...CAGCCCAGCAGGGTCTGCGCCAGAGTGTCTAACCTGGGGCATTCTGTTCACATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR GCA 90 bp CTCAGGTGGAAGCACCAGGGTAAGTCCCAGGTGGCCGGGCATAAAGGAATGAGATGCACCGCGAGGCCCTaGTCAAAGCTTCCGGCATCC +
Preference number: 4 (lower is better)
Translates to: LRWKHQGKSQVAGHKGMRCTARP*SKLPAS
Trigger: GGATGCCGGAAGCTTTGAGCAGGGCCTCGCGGTGCA...TCTCATTCCTTTATGCCCGGCCACCTGGGACTTACCCTGGTGCTTCCACCTGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR CCA 90 bp ACTCTGGCGCAGACCCTGCTGGGCTGCTACATTAGAGAGAGTAAGGTTCAACTCCCACCGCCTTGCCGCTaGGGTGAGCGGAAGCCAGGA +
Preference number: 4 (lower is better)
Translates to: TLAQTLLGCYIRESKVQLPPPCR*GERKPG
Trigger: TCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGG...GAGTTGAACCTTACTCTCTCTAATGTAGCAGCCCAGCAGGGTCTGCGCCAGAGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR CCA 90 bp CACCTCTCAGGTGGAAGCACCAGGGTAAGTCCCAGGTGGCCGGGCATAAAGGAACTGAGTGGCTATGTCTaGGTTCCAGGCCAGGCCCGA +
Preference number: 4 (lower is better)
Translates to: HLSGGSTRVSPRWPGIKELSGYV*VPGQAR
Trigger: TCGGGCCTGGCCTGGAACCCAGACATAGCCACTCAG...TTCCTTTATGCCCGGCCACCTGGGACTTACCCTGGTGCTTCCACCTGAGAGGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR CCA 90 bp GGTAAGTCCCAGGTGGCCGGGCATAAAGGAATGAGAAGGAGACACTCAGCTGGCGCCTGTGCCACTGGCTaGACAGGGATGCTGGGAAGG +
Preference number: 4 (lower is better)
Translates to: GKSQVAGHKGMRRRHSAGACATG*TGMLGR
Trigger: CCTTCCCAGCATCCCTGTCCAGCCAGTGGCACAGGC...GCCAGCTGAGTGTCTCCTTCTCATTCCTTTATGCCCGGCCACCTGGGACTTACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR CCA 90 bp CTCAGGTGGAAGCACCAGGGTAAGTCCCAGGTGGCCGGGCATAAAGGAATGAGAGCTCCTGCAGAGCCATaGGGCTCGAGGCTTGCTGGA +
Preference number: 4 (lower is better)
Translates to: LRWKHQGKSQVAGHKGMRAPAEP*GSRLAG
Trigger: TCCAGCAAGCCTCGAGCCCCATGGCTCTGCAGGAGC...TCTCATTCCTTTATGCCCGGCCACCTGGGACTTACCCTGGTGCTTCCACCTGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR CCA 90 bp GGAAGCCATGTGAACAGAATGCCCCAGGTTAGACACTCTGGCGCAGACCCTGCTGTGGCTAGGCTGCCCTaGGCTGCCAGGAGATTGGCA +
Preference number: 4 (lower is better)
Translates to: GSHVNRMPQVRHSGADPAVARLP*AARRLA
Trigger: TGCCAATCTCCTGGCAGCCCAGGGCAGCCTAGCCAC...AGCAGGGTCTGCGCCAGAGTGTCTAACCTGGGGCATTCTGTTCACATGGCTTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR CCA 90 bp CATAAAGGAATGAGAAGGAGACACTCAGCTGGCGTGGGGCCAAGCCCCCAGTGTTGGGGACGCCATGACTaGAGTGGGGCCAGGAAGAGG +
Preference number: 4 (lower is better)
Translates to: HKGMRRRHSAGVGPSPQCWGRHD*SGARKR
Trigger: CCTCTTCCTGGCCCCACTCCAGTCATGGCGTCCCCA...ACACTGGGGGCTTGGCCCCACGCCAGCTGAGTGTCTCCTTCTCATTCCTTTATG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR CCA 90 bp CACCTCTCAGGTGGAAGCACCAGGGTAAGTCCCAGGTGGCCGGGCATAAAGGAAGGAGTCCTGGGGTCCTaGACAAGTGGCCAAGATGCC +
Preference number: 4 (lower is better)
Translates to: HLSGGSTRVSPRWPGIKEGVLGS*TSGQDA
Trigger: GGCATCTTGGCCACTTGTCCAGGACCCCAGGACTCC...TTCCTTTATGCCCGGCCACCTGGGACTTACCCTGGTGCTTCCACCTGAGAGGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR CCA 90 bp CATGTGAACAGAATGCCCCAGGTTAGACACTCTGGCGCAGACCCTGCTGGGCTGGAGGCAGGGTCGCACTaGAGACTAGGGGCTGAGGTA +
Preference number: 4 (lower is better)
Translates to: HVNRMPQVRHSGADPAGLEAGSH*RLGAEV
Trigger: TACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTC...CAGCCCAGCAGGGTCTGCGCCAGAGTGTCTAACCTGGGGCATTCTGTTCACATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR TCA 90 bp AGGTGGAAGCACCAGGGTAAGTCCCAGGTGGCCGGGCATAAAGGAATGAGAAGGCAGGGGCTCCTTCCCTaGAGAAAGGACGTGGGTCAC +
Preference number: 4 (lower is better)
Translates to: RWKHQGKSQVAGHKGMRRQGLLP*RKDVGH
Trigger: GTGACCCACGTCCTTTCTTCAGGGAAGGAGCCCCTG...CCTTCTCATTCCTTTATGCCCGGCCACCTGGGACTTACCCTGGTGCTTCCACCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR TCA 90 bp CTCAGGTGGAAGCACCAGGGTAAGTCCCAGGTGGCCGGGCATAAAGGAATGAGACAAGGGAGGGATGAGTaGTGCTTGGGCCACCTGCTC +
Preference number: 4 (lower is better)
Translates to: LRWKHQGKSQVAGHKGMRQGRDE*CLGHLL
Trigger: GAGCAGGTGGCCCAAGCATCACTCATCCCTCCCTTG...TCTCATTCCTTTATGCCCGGCCACCTGGGACTTACCCTGGTGCTTCCACCTGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR TCA 90 bp GCTTCTCATACAGACATTCTAGGCGGCGGGCTGCCTCCTCCAGCTTCCTTTTTGTGGGCTGGGAGGGGCTaGAGGGCATCACTGATGACG +
Preference number: 4 (lower is better)
Translates to: ASHTDILGGGLPPPASFLWAGRG*RASLMT
Trigger: CGTCATCAGTGATGCCCTTCAGCCCCTCCCAGCCCA...CAAAAAGGAAGCTGGAGGAGGCAGCCCGCCGCCTAGAATGTCTGTATGAGAAGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000165758.2
CDS-3UTR TCA 90 bp CTCAGGGCCAAGGCTCCTAAGCGGAGCTGTAATTGGTGCTGGAGGCATGAATGTGACCCTGTGGTCACTTaGGCCCTGAGAAGGGCTGGG +
Preference number: 4 (lower is better)
Translates to: LRAKAPKRSCNWCWRHECDPVVT*ALRRAG
Trigger: CCCAGCCCTTCTCAGGGCTCAAGTGACCACAGGGTC...ACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165758.2
CDS-3UTR TCA 90 bp ATGAGAAGGAGACACTCAGCTGGCGTGGGGCCAAGCCCCCAGTGTCACATACCTGAGCCACAGAGAAAGTaGCAGGAGAGGCTGGGAGCT +
Preference number: 4 (lower is better)
Translates to: MRRRHSAGVGPSPQCHIPEPQRK*QERLGA
Trigger: AGCTCCCAGCCTCTCCTGTCACTTTCTCTGTGGCTC...AGGTATGTGACACTGGGGGCTTGGCCCCACGCCAGCTGAGTGTCTCCTTCTCAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR TCA 90 bp GGTAAGTCCCAGGTGGCCGGGCATAAAGGAATGAGAAGGAGACACTCAGCTGGCCTGGAGACTAGGGGCTaGGGTAGCAGGGCCTGTTGT +
Preference number: 4 (lower is better)
Translates to: GKSQVAGHKGMRRRHSAGLETRG*GSRACC
Trigger: ACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAG...GCCAGCTGAGTGTCTCCTTCTCATTCCTTTATGCCCGGCCACCTGGGACTTACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR GCA 90 bp CATAAAGGAATGAGAAGGAGACACTCAGCTGGCGTGGGGCCAAGCCCCCAGTGTGGCACCTTGTCAGCCTaGCTCATGTGCTGGGCTTCC +
Preference number: 4 (lower is better)
Translates to: HKGMRRRHSAGVGPSPQCGTLSA*LMCWAS
Trigger: GGAAGCCCAGCACATGAGGCAGGCTGACAAGGTGCC...ACACTGGGGGCTTGGCCCCACGCCAGCTGAGTGTCTCCTTCTCATTCCTTTATG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR GCA 90 bp TTCAACTCTGAGCATCACCTCTCAGGTGGAAGCACCAGGGTAAGTCCCAGGTGGGGCTTCAGAGGTGAGTaGCCTGCCTCCCTCCTGCTC +
Preference number: 4 (lower is better)
Translates to: FNSEHHLSGGSTRVSPRWGFRGE*PASLLL
Trigger: GAGCAGGAGGGAGGCAGGGCACTCACCTCTGAAGCC...CCACCTGGGACTTACCCTGGTGCTTCCACCTGAGAGGTGATGCTCAGAGTTGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR CCA 90 bp GGAAGCCATGTGAACAGAATGCCCCAGGTTAGACACTCTGGCGCAGACCCTGCTGCCGGGCTCCACGCTTaGACAGCTGGCTTCTCAAGT +
Preference number: 4 (lower is better)
Translates to: GSHVNRMPQVRHSGADPAAGLHA*TAGFSS
Trigger: ACTTGAGAAGCCAGCTGTCCAAGCGTGGAGCCCGGC...AGCAGGGTCTGCGCCAGAGTGTCTAACCTGGGGCATTCTGTTCACATGGCTTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR CCA 90 bp CTCAGGTGGAAGCACCAGGGTAAGTCCCAGGTGGCCGGGCATAAAGGAATGAGACCGAGCAGCAGAGCCTaGCTCAGGAGTCCATCAGTG +
Preference number: 4 (lower is better)
Translates to: LRWKHQGKSQVAGHKGMRPSSRA*LRSPSV
Trigger: CACTGATGGACTCCTGAGCCAGGCTCTGCTGCTCGG...TCTCATTCCTTTATGCCCGGCCACCTGGGACTTACCCTGGTGCTTCCACCTGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR CCA 90 bp GGAAGCCATGTGAACAGAATGCCCCAGGTTAGACACTCTGGCGCAGACCCTGCTCCTCACAGATGGAGCTaGGACCTGCTGAGGAGGCTG +
Preference number: 4 (lower is better)
Translates to: GSHVNRMPQVRHSGADPAPHRWS*DLLRRL
Trigger: CAGCCTCCTCAGCAGGTCCCAGCTCCATCTGTGAGG...AGCAGGGTCTGCGCCAGAGTGTCTAACCTGGGGCATTCTGTTCACATGGCTTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR CCA 90 bp CATGTGAACAGAATGCCCCAGGTTAGACACTCTGGCGCAGACCCTGCTGGGCTGATGACGGCTGAGCTGTaGTCCTCGGCCTCACAGATG +
Preference number: 4 (lower is better)
Translates to: HVNRMPQVRHSGADPAGLMTAEL*SSASQM
Trigger: CATCTGTGAGGCCGAGGACCACAGCTCAGCCGTCAT...CAGCCCAGCAGGGTCTGCGCCAGAGTGTCTAACCTGGGGCATTCTGTTCACATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR CCA 90 bp AAGCACCAGGGTAAGTCCCAGGTGGCCGGGCATAAAGGAATGAGAAGGAGACACGGAGAGGCTGGGAGCTaGGAGCTCAGAGGGTTGGGA +
Preference number: 4 (lower is better)
Translates to: KHQGKSQVAGHKGMRRRHGEAGS*ELRGLG
Trigger: TCCCAACCCTCTGAGCTCCCAGCTCCCAGCCTCTCC...GTGTCTCCTTCTCATTCCTTTATGCCCGGCCACCTGGGACTTACCCTGGTGCTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR CCA 90 bp AAGCACCAGGGTAAGTCCCAGGTGGCCGGGCATAAAGGAATGAGAAGGAGACACAGAGCACGGTGCTCTTaGACCTCCAGGAGGGGGAGC +
Preference number: 4 (lower is better)
Translates to: KHQGKSQVAGHKGMRRRHRARCS*TSRRGS
Trigger: GCTCCCCCTCCTGGAGGTCCAAGAGCACCGTGCTCT...GTGTCTCCTTCTCATTCCTTTATGCCCGGCCACCTGGGACTTACCCTGGTGCTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR CCA 90 bp CATGTGAACAGAATGCCCCAGGTTAGACACTCTGGCGCAGACCCTGCTGGGCTGACTTTCCAGGAGTCCTaGGGTCCTGGACAAGTGGCC +
Preference number: 4 (lower is better)
Translates to: HVNRMPQVRHSGADPAGLTFQES*GPGQVA
Trigger: GGCCACTTGTCCAGGACCCCAGGACTCCTGGAAAGT...CAGCCCAGCAGGGTCTGCGCCAGAGTGTCTAACCTGGGGCATTCTGTTCACATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR CCA 90 bp CTCAGGTGGAAGCACCAGGGTAAGTCCCAGGTGGCCGGGCATAAAGGAATGAGACAGGCTGCATTCTCTTaGGGCTCCAGGAGGAGGCAG +
Preference number: 4 (lower is better)
Translates to: LRWKHQGKSQVAGHKGMRQAAFS*GSRRRQ
Trigger: CTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTG...TCTCATTCCTTTATGCCCGGCCACCTGGGACTTACCCTGGTGCTTCCACCTGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR CCA 90 bp CACCTCTCAGGTGGAAGCACCAGGGTAAGTCCCAGGTGGCCGGGCATAAAGGAATCAGGAGGCAGTGGCTaGAGTTGCTGCAGGCTGCAT +
Preference number: 4 (lower is better)
Translates to: HLSGGSTRVSPRWPGIKESGGSG*SCCRLH
Trigger: ATGCAGCCTGCAGCAACTCCAGCCACTGCCTCCTGA...TTCCTTTATGCCCGGCCACCTGGGACTTACCCTGGTGCTTCCACCTGAGAGGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR CCA 90 bp AGGTGGAAGCACCAGGGTAAGTCCCAGGTGGCCGGGCATAAAGGAATGAGAAGGCCTCTCAGGAGGCAGTaGCTGGAGTTGCTGCAGGCT +
Preference number: 4 (lower is better)
Translates to: RWKHQGKSQVAGHKGMRRPLRRQ*LELLQA
Trigger: AGCCTGCAGCAACTCCAGCCACTGCCTCCTGAGAGG...CCTTCTCATTCCTTTATGCCCGGCCACCTGGGACTTACCCTGGTGCTTCCACCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR TCA 90 bp AAGCACCAGGGTAAGTCCCAGGTGGCCGGGCATAAAGGAATGAGAAGGAGACACAGAGTCACTGGCTCCTaGGGCCAGGAGATTGCCCTG +
Preference number: 4 (lower is better)
Translates to: KHQGKSQVAGHKGMRRRHRVTGS*GQEIAL
Trigger: CAGGGCAATCTCCTGGCCTCAGGAGCCAGTGACTCT...GTGTCTCCTTCTCATTCCTTTATGCCCGGCCACCTGGGACTTACCCTGGTGCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR TCA 90 bp CATAAAGGAATGAGAAGGAGACACTCAGCTGGCGTGGGGCCAAGCCCCCAGTGTTCTGCATCCCCAGCCTaGGCCAGGATGATGGCATCA +
Preference number: 4 (lower is better)
Translates to: HKGMRRRHSAGVGPSPQCSASPA*ARMMAS
Trigger: TGATGCCATCATCCTGGCTCAGGCTGGGGATGCAGA...ACACTGGGGGCTTGGCCCCACGCCAGCTGAGTGTCTCCTTCTCATTCCTTTATG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR TCA 90 bp CATGTGAACAGAATGCCCCAGGTTAGACACTCTGGCGCAGACCCTGCTGGGCTGGTTCTTGTGTCCACTTaGGCAGCTCTGCATCCCCAG +
Preference number: 4 (lower is better)
Translates to: HVNRMPQVRHSGADPAGLVLVST*AALHPQ
Trigger: CTGGGGATGCAGAGCTGCTCAAGTGGACACAAGAAC...CAGCCCAGCAGGGTCTGCGCCAGAGTGTCTAACCTGGGGCATTCTGTTCACATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR TCA 90 bp CACCTCTCAGGTGGAAGCACCAGGGTAAGTCCCAGGTGGCCGGGCATAAAGGAAGATTGGCATACTGGGTaGGCCTGTGTGTTGTGGCAG +
Preference number: 4 (lower is better)
Translates to: HLSGGSTRVSPRWPGIKEDWHTG*ACVLWQ
Trigger: CTGCCACAACACACAGGCTCACCCAGTATGCCAATC...TTCCTTTATGCCCGGCCACCTGGGACTTACCCTGGTGCTTCCACCTGAGAGGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR GCA 90 bp AGGTGGAAGCACCAGGGTAAGTCCCAGGTGGCCGGGCATAAAGGAATGAGAAGGGGAGTTGCTGCAGGCTaGATTCTCTTGGGGCTCCAG +
Preference number: 4 (lower is better)
Translates to: RWKHQGKSQVAGHKGMRRGVAAG*ILLGLQ
Trigger: CTGGAGCCCCAAGAGAATGCAGCCTGCAGCAACTCC...CCTTCTCATTCCTTTATGCCCGGCCACCTGGGACTTACCCTGGTGCTTCCACCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR CCA 90 bp ACTCTGGCGCAGACCCTGCTGGGCTGCTACATTAGAGAGAGTAAGGTTCAACTCGGGAGCTCAGAGGGTTaGGACCTGGTGGTCCCACAG +
Preference number: 4 (lower is better)
Translates to: TLAQTLLGCYIRESKVQLGSSEG*DLVVPQ
Trigger: CTGTGGGACCACCAGGTCCCAACCCTCTGAGCTCCC...GAGTTGAACCTTACTCTCTCTAATGTAGCAGCCCAGCAGGGTCTGCGCCAGAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR CCA 90 bp TTCAACTCTGAGCATCACCTCTCAGGTGGAAGCACCAGGGTAAGTCCCAGGTGGAGTGACAGGAGAGGCTaGGAGCTGGGAGCTCAGAGG +
Preference number: 4 (lower is better)
Translates to: FNSEHHLSGGSTRVSPRWSDRRG*ELGAQR
Trigger: CCTCTGAGCTCCCAGCTCCCAGCCTCTCCTGTCACT...CCACCTGGGACTTACCCTGGTGCTTCCACCTGAGAGGTGATGCTCAGAGTTGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR CCA 90 bp AACAGAATGCCCCAGGTTAGACACTCTGGCGCAGACCCTGCTGGGCTGCTACATCACGCACTGATGCTCTaGGGGCAGCTCCTTCTCTGT +
Preference number: 4 (lower is better)
Translates to: NRMPQVRHSGADPAGLLHHALML*GQLLLC
Trigger: ACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTG...ATGTAGCAGCCCAGCAGGGTCTGCGCCAGAGTGTCTAACCTGGGGCATTCTGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR TCA 90 bp CATAAAGGAATGAGAAGGAGACACTCAGCTGGCGTGGGGCCAAGCCCCCAGTGTGAGGCATCTAGTTGCTaGGCAGATGTTCCTGTGGCC +
Preference number: 4 (lower is better)
Translates to: HKGMRRRHSAGVGPSPQCEASSC*ADVPVA
Trigger: GGCCACAGGAACATCTGCTCAGCAACTAGATGCCTC...ACACTGGGGGCTTGGCCCCACGCCAGCTGAGTGTCTCCTTCTCATTCCTTTATG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR TCA 90 bp ACTCTGGCGCAGACCCTGCTGGGCTGCTACATTAGAGAGAGTAAGGTTCAACTCCCGCTCCACACTCCCTaGGCACACGTAGCAGAGTCT +
Preference number: 4 (lower is better)
Translates to: TLAQTLLGCYIRESKVQLPLHTP*AHVAES
Trigger: AGACTCTGCTACGTGTGCTCAGGGAGTGTGGAGCGG...GAGTTGAACCTTACTCTCTCTAATGTAGCAGCCCAGCAGGGTCTGCGCCAGAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR TCA 90 bp GGTAAGTCCCAGGTGGCCGGGCATAAAGGAATGAGAAGGAGACACTCAGCTGGCATCTTGTTAGAGCCCTaGAGGAGCTCCAGGCTCCTG +
Preference number: 4 (lower is better)
Translates to: GKSQVAGHKGMRRRHSAGILLEP*RSSRLL
Trigger: CAGGAGCCTGGAGCTCCTTCAGGGCTCTAACAAGAT...GCCAGCTGAGTGTCTCCTTCTCATTCCTTTATGCCCGGCCACCTGGGACTTACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR TCA 90 bp GGAAGCCATGTGAACAGAATGCCCCAGGTTAGACACTCTGGCGCAGACCCTGCTCGATCTCTCAGCTGCTaGACTCCTGGCTGGATACAG +
Preference number: 4 (lower is better)
Translates to: GSHVNRMPQVRHSGADPARSLSC*TPGWIQ
Trigger: CTGTATCCAGCCAGGAGTTCAGCAGCTGAGAGATCG...AGCAGGGTCTGCGCCAGAGTGTCTAACCTGGGGCATTCTGTTCACATGGCTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR TCA 90 bp AAGCACCAGGGTAAGTCCCAGGTGGCCGGGCATAAAGGAATGAGAAGGAGACACGTCAGGGAACAGCGCTaGAGGAGTGCCTCAAAGCTG +
Preference number: 4 (lower is better)
Translates to: KHQGKSQVAGHKGMRRRHVREQR*RSASKL
Trigger: CAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGAC...GTGTCTCCTTCTCATTCCTTTATGCCCGGCCACCTGGGACTTACCCTGGTGCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR GCA 90 bp AGGTGGAAGCACCAGGGTAAGTCCCAGGTGGCCGGGCATAAAGGAATGAGAAGGGCGGAAGCCAGGATGTaGTGGACTTGGAGGTTCCAA +
Preference number: 4 (lower is better)
Translates to: RWKHQGKSQVAGHKGMRRAEARM*WTWRFQ
Trigger: TTGGAACCTCCAAGTCCAGCACATCCTGGCTTCCGC...CCTTCTCATTCCTTTATGCCCGGCCACCTGGGACTTACCCTGGTGCTTCCACCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR GCA 90 bp GGAAGCCATGTGAACAGAATGCCCCAGGTTAGACACTCTGGCGCAGACCCTGCTAGTGGCTGGAGTTGCTaGAGGCTGCATTCTCTTGGG +
Preference number: 4 (lower is better)
Translates to: GSHVNRMPQVRHSGADPASGWSC*RLHSLG
Trigger: CCCAAGAGAATGCAGCCTGCAGCAACTCCAGCCACT...AGCAGGGTCTGCGCCAGAGTGTCTAACCTGGGGCATTCTGTTCACATGGCTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR CCA 90 bp AACAGAATGCCCCAGGTTAGACACTCTGGCGCAGACCCTGCTGGGCTGCTACATACCAGCTGCTCTGTGTaGGCAGCTTGTAGACCACCT +
Preference number: 4 (lower is better)
Translates to: NRMPQVRHSGADPAGLLHTSCSV*AACRPP
Trigger: AGGTGGTCTACAAGCTGCCCACACAGAGCAGCTGGT...ATGTAGCAGCCCAGCAGGGTCTGCGCCAGAGTGTCTAACCTGGGGCATTCTGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR CCA 90 bp CTCAGGGCCAAGGCTCCTAAGCGGAGCTGTAATTGGTGCTGGAGGCATGAATGTATGACGGCTGAGCTGTaGTCCTCGGCCTCACAGATG +
Preference number: 4 (lower is better)
Translates to: LRAKAPKRSCNWCWRHECMTAEL*SSASQM
Trigger: CATCTGTGAGGCCGAGGACCACAGCTCAGCCGTCAT...ACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165758.2
CDS-3UTR CCA 90 bp AAGCACCAGGGTAAGTCCCAGGTGGCCGGGCATAAAGGAATGAGAAGGAGACACGGGCTGCATGAAGTCTaGGGACGCCATGACTGGAGT +
Preference number: 4 (lower is better)
Translates to: KHQGKSQVAGHKGMRRRHGLHEV*GRHDWS
Trigger: ACTCCAGTCATGGCGTCCCCAGACTTCATGCAGCCC...GTGTCTCCTTCTCATTCCTTTATGCCCGGCCACCTGGGACTTACCCTGGTGCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR TCA 90 bp AAGCACCAGGGTAAGTCCCAGGTGGCCGGGCATAAAGGAATGAGAAGGAGACACTGGGCTCATTCTTTCTaGGATCCCACACCACCGCCT +
Preference number: 4 (lower is better)
Translates to: KHQGKSQVAGHKGMRRRHWAHSF*DPTPPP
Trigger: AGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCA...GTGTCTCCTTCTCATTCCTTTATGCCCGGCCACCTGGGACTTACCCTGGTGCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR TCA 90 bp GGTAAGTCCCAGGTGGCCGGGCATAAAGGAATGAGAAGGAGACACTCAGCTGGCGAGCACAGCACTAACTaGGTGGCTATGTCTGGGTTC +
Preference number: 4 (lower is better)
Translates to: GKSQVAGHKGMRRRHSAGEHSTN*VAMSGF
Trigger: GAACCCAGACATAGCCACTCAGTTAGTGCTGTGCTC...GCCAGCTGAGTGTCTCCTTCTCATTCCTTTATGCCCGGCCACCTGGGACTTACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR TCA 90 bp TTCAACTCTGAGCATCACCTCTCAGGTGGAAGCACCAGGGTAAGTCCCAGGTGGTCTTCAAGGGAGGGATaGGTGATGCTTGGGCCACCT +
Preference number: 4 (lower is better)
Translates to: FNSEHHLSGGSTRVSPRWSSREG*VMLGPP
Trigger: AGGTGGCCCAAGCATCACTCATCCCTCCCTTGAAGA...CCACCTGGGACTTACCCTGGTGCTTCCACCTGAGAGGTGATGCTCAGAGTTGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR TCA 90 bp GGAAGCCATGTGAACAGAATGCCCCAGGTTAGACACTCTGGCGCAGACCCTGCTGTGCTCTGTCACTTTTaGGGTCAACCGCCTCAAGCT +
Preference number: 4 (lower is better)
Translates to: GSHVNRMPQVRHSGADPAVLCHF*GQPPQA
Trigger: AGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCAC...AGCAGGGTCTGCGCCAGAGTGTCTAACCTGGGGCATTCTGTTCACATGGCTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR TCA 90 bp GGAAGCCATGTGAACAGAATGCCCCAGGTTAGACACTCTGGCGCAGACCCTGCTGCAGAACCTTGGGCATaGAAAAGCCGATCTCTCAGC +
Preference number: 4 (lower is better)
Translates to: GSHVNRMPQVRHSGADPAAEPWA*KSRSLS
Trigger: GCTGAGAGATCGGCTTTTTCATGCCCAAGGTTCTGC...AGCAGGGTCTGCGCCAGAGTGTCTAACCTGGGGCATTCTGTTCACATGGCTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR GCA 90 bp CATAAAGGAATGAGAAGGAGACACTCAGCTGGCGTGGGGCCAAGCCCCCAGTGTCATCAAAGCACCAGCTaGTCTGTGTGGGCAGCTTGT +
Preference number: 4 (lower is better)
Translates to: HKGMRRRHSAGVGPSPQCHQSTS*SVWAAC
Trigger: ACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATG...ACACTGGGGGCTTGGCCCCACGCCAGCTGAGTGTCTCCTTCTCATTCCTTTATG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR GCA 90 bp TTAGACACTCTGGCGCAGACCCTGCTGGGCTGCTACATTAGAGAGAGTAAGGTTGATGCTTGGGCCACCTaGTCAGGCACCTTGTCAGCC +
Preference number: 4 (lower is better)
Translates to: LDTLAQTLLGCYIRESKVDAWAT*SGTLSA
Trigger: GGCTGACAAGGTGCCTGAGCAGGTGGCCCAAGCATC...AACCTTACTCTCTCTAATGTAGCAGCCCAGCAGGGTCTGCGCCAGAGTGTCTAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR GCA 90 bp ACTCTGGCGCAGACCCTGCTGGGCTGCTACATTAGAGAGAGTAAGGTTCAACTCGATCCCAAGGCCTCCTaGAGCACAACTGACCGAGTC +
Preference number: 4 (lower is better)
Translates to: TLAQTLLGCYIRESKVQLDPKAS*STTDRV
Trigger: GACTCGGTCAGTTGTGCTGCAGGAGGCCTTGGGATC...GAGTTGAACCTTACTCTCTCTAATGTAGCAGCCCAGCAGGGTCTGCGCCAGAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR GCA 90 bp CATAAAGGAATGAGAAGGAGACACTCAGCTGGCGTGGGGCCAAGCCCCCAGTGTACAGCGCTGAAGGAGTaGCTCAAAGCTGTCCTTCAC +
Preference number: 4 (lower is better)
Translates to: HKGMRRRHSAGVGPSPQCTALKE*LKAVLH
Trigger: GTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGT...ACACTGGGGGCTTGGCCCCACGCCAGCTGAGTGTCTCCTTCTCATTCCTTTATG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR CCA 90 bp CTCAGGTGGAAGCACCAGGGTAAGTCCCAGGTGGCCGGGCATAAAGGAATGAGAAGATCTCAGAGTCACTaGCTCCTGAGGCCAGGAGAT +
Preference number: 4 (lower is better)
Translates to: LRWKHQGKSQVAGHKGMRRSQSH*LLRPGD
Trigger: ATCTCCTGGCCTCAGGAGCCAGTGACTCTGAGATCT...TCTCATTCCTTTATGCCCGGCCACCTGGGACTTACCCTGGTGCTTCCACCTGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR CCA 90 bp CTCAGGTGGAAGCACCAGGGTAAGTCCCAGGTGGCCGGGCATAAAGGAATGAGAGAAGCCAGGATGTGCTaGACTTGGAGGTTCCAAGAC +
Preference number: 4 (lower is better)
Translates to: LRWKHQGKSQVAGHKGMREARMC*TWRFQD
Trigger: GTCTTGGAACCTCCAAGTCCAGCACATCCTGGCTTC...TCTCATTCCTTTATGCCCGGCCACCTGGGACTTACCCTGGTGCTTCCACCTGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR CCA 90 bp AAGCACCAGGGTAAGTCCCAGGTGGCCGGGCATAAAGGAATGAGAAGGAGACACAAGATGCCCCTGCTGTaGCTCTCCAGCACCTTCAAG +
Preference number: 4 (lower is better)
Translates to: KHQGKSQVAGHKGMRRRHKMPLL*LSSTFK
Trigger: CTTGAAGGTGCTGGAGAGCCACAGCAGGGGCATCTT...GTGTCTCCTTCTCATTCCTTTATGCCCGGCCACCTGGGACTTACCCTGGTGCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR CCA 90 bp GGAAGCCATGTGAACAGAATGCCCCAGGTTAGACACTCTGGCGCAGACCCTGCTACTCAGAGGCTTCCTTaGCAGTGTGTTTGGAGGCCT +
Preference number: 4 (lower is better)
Translates to: GSHVNRMPQVRHSGADPATQRLP*QCVWRP
Trigger: AGGCCTCCAAACACACTGCCAAGGAAGCCTCTGAGT...AGCAGGGTCTGCGCCAGAGTGTCTAACCTGGGGCATTCTGTTCACATGGCTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR CCA 90 bp TTCAACTCTGAGCATCACCTCTCAGGTGGAAGCACCAGGGTAAGTCCCAGGTGGCATCAGTGTCTTCTGTaGTGGGGATCTCCCAGGGAG +
Preference number: 4 (lower is better)
Translates to: FNSEHHLSGGSTRVSPRWHQCLL*WGSPRE
Trigger: CTCCCTGGGAGATCCCCACCACAGAAGACACTGATG...CCACCTGGGACTTACCCTGGTGCTTCCACCTGAGAGGTGATGCTCAGAGTTGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR CCA 90 bp CTCAGGTGGAAGCACCAGGGTAAGTCCCAGGTGGCCGGGCATAAAGGAATGAGATGTTGTGGCAGGACCTaGGCTCATCTTGTTAGAGCC +
Preference number: 4 (lower is better)
Translates to: LRWKHQGKSQVAGHKGMRCCGRT*AHLVRA
Trigger: GGCTCTAACAAGATGAGCCCAGGTCCTGCCACAACA...TCTCATTCCTTTATGCCCGGCCACCTGGGACTTACCCTGGTGCTTCCACCTGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR CCA 90 bp CTCAGGTGGAAGCACCAGGGTAAGTCCCAGGTGGCCGGGCATAAAGGAATGAGAGATGTCTCTTTGGAGTaGAGGGCAGCTCCTACAGCA +
Preference number: 4 (lower is better)
Translates to: LRWKHQGKSQVAGHKGMRDVSLE*RAAPTA
Trigger: TGCTGTAGGAGCTGCCCTCCACTCCAAAGAGACATC...TCTCATTCCTTTATGCCCGGCCACCTGGGACTTACCCTGGTGCTTCCACCTGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR CCA 90 bp CACCTCTCAGGTGGAAGCACCAGGGTAAGTCCCAGGTGGCCGGGCATAAAGGAAAGCTGGGTTTACAGCTaGAACACTTTGTCCTCCGGA +
Preference number: 4 (lower is better)
Translates to: HLSGGSTRVSPRWPGIKESWVYS*NTLSSG
Trigger: TCCGGAGGACAAAGTGTTCCAGCTGTAAACCCAGCT...TTCCTTTATGCCCGGCCACCTGGGACTTACCCTGGTGCTTCCACCTGAGAGGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR TCA 90 bp AGGTGGAAGCACCAGGGTAAGTCCCAGGTGGCCGGGCATAAAGGAATGAGAAGGGACCACCTCACTGCTTaGCAGGTTCCAGCAAAAGAT +
Preference number: 4 (lower is better)
Translates to: RWKHQGKSQVAGHKGMRRDHLTA*QVPAKD
Trigger: ATCTTTTGCTGGAACCTGTCAAGCAGTGAGGTGGTC...CCTTCTCATTCCTTTATGCCCGGCCACCTGGGACTTACCCTGGTGCTTCCACCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR TCA 90 bp AGGTGGAAGCACCAGGGTAAGTCCCAGGTGGCCGGGCATAAAGGAATGAGAAGGTCACAGAGCACAAACTaGTCCAGCCATCGAAGGAGA +
Preference number: 4 (lower is better)
Translates to: RWKHQGKSQVAGHKGMRRSQSTN*SSHRRR
Trigger: TCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGA...CCTTCTCATTCCTTTATGCCCGGCCACCTGGGACTTACCCTGGTGCTTCCACCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR TCA 90 bp CTCAGGTGGAAGCACCAGGGTAAGTCCCAGGTGGCCGGGCATAAAGGAATGAGACCGAGTCAGGACTTCTaGCTCTGTGATGACTTGACT +
Preference number: 4 (lower is better)
Translates to: LRWKHQGKSQVAGHKGMRPSQDF*LCDDLT
Trigger: AGTCAAGTCATCACAGAGTCAGAAGTCCTGACTCGG...TCTCATTCCTTTATGCCCGGCCACCTGGGACTTACCCTGGTGCTTCCACCTGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR TCA 90 bp CATAAAGGAATGAGAAGGAGACACTCAGCTGGCGTGGGGCCAAGCCCCCAGTGTTCAACCGCCTCAAGCTaGGGGCTTTCCTGTGATTTT +
Preference number: 4 (lower is better)
Translates to: HKGMRRRHSAGVGPSPQCSTASS*GLSCDF
Trigger: AAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGA...ACACTGGGGGCTTGGCCCCACGCCAGCTGAGTGTCTCCTTCTCATTCCTTTATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR TCA 90 bp GGTAAGTCCCAGGTGGCCGGGCATAAAGGAATGAGAAGGAGACACTCAGCTGGCTTGGTGCTGGAGGCATaGATGTCTCAGGCAGCTTTT +
Preference number: 4 (lower is better)
Translates to: GKSQVAGHKGMRRRHSAGLVLEA*MSQAAF
Trigger: AAAAGCTGCCTGAGACATTCATGCCTCCAGCACCAA...GCCAGCTGAGTGTCTCCTTCTCATTCCTTTATGCCCGGCCACCTGGGACTTACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR GCA 90 bp GGTAAGTCCCAGGTGGCCGGGCATAAAGGAATGAGAAGGAGACACTCAGCTGGCCTGACAGCTCCAGTGTaGTTCTGTTTCTGGGCAATC +
Preference number: 4 (lower is better)
Translates to: GKSQVAGHKGMRRRHSAGLTAPV*FCFWAI
Trigger: GATTGCCCAGAAACAGAAGCACACTGGAGCTGTCAG...GCCAGCTGAGTGTCTCCTTCTCATTCCTTTATGCCCGGCCACCTGGGACTTACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR GCA 90 bp AAGCACCAGGGTAAGTCCCAGGTGGCCGGGCATAAAGGAATGAGAAGGAGACACGAGGTTCCAAGACAATaGCTTGATGTCCTCTGGGGG +
Preference number: 4 (lower is better)
Translates to: KHQGKSQVAGHKGMRRRHEVPRQ*LDVLWG
Trigger: CCCCCAGAGGACATCAAGGCATTGTCTTGGAACCTC...GTGTCTCCTTCTCATTCCTTTATGCCCGGCCACCTGGGACTTACCCTGGTGCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR GCA 90 bp TTAGACACTCTGGCGCAGACCCTGCTGGGCTGCTACATTAGAGAGAGTAAGGTTTCGACAAGATGCCCCTaGTGTGGCTCTCCAGCACCT +
Preference number: 4 (lower is better)
Translates to: LDTLAQTLLGCYIRESKVSTRCP*CGSPAP
Trigger: AGGTGCTGGAGAGCCACAGCAGGGGCATCTTGTCGA...AACCTTACTCTCTCTAATGTAGCAGCCCAGCAGGGTCTGCGCCAGAGTGTCTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR CCA 90 bp CATAAAGGAATGAGAAGGAGACACTCAGCTGGCGTGGGGCCAAGCCCCCAGTGTGAGCAGATGTTCCTGTaGCCAGATACACAGGGTACT +
Preference number: 4 (lower is better)
Translates to: HKGMRRRHSAGVGPSPQCEQMFL*PDTQGT
Trigger: AGTACCCTGTGTATCTGGCCACAGGAACATCTGCTC...ACACTGGGGGCTTGGCCCCACGCCAGCTGAGTGTCTCCTTCTCATTCCTTTATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR CCA 90 bp GGTAAGTCCCAGGTGGCCGGGCATAAAGGAATGAGAAGGAGACACTCAGCTGGCCTTTGGAGGTTTCCCTaGGAGGCTGGAGAAACTTTC +
Preference number: 4 (lower is better)
Translates to: GKSQVAGHKGMRRRHSAGLWRFP*EAGETF
Trigger: GAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAG...GCCAGCTGAGTGTCTCCTTCTCATTCCTTTATGCCCGGCCACCTGGGACTTACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR TCA 90 bp AAGCACCAGGGTAAGTCCCAGGTGGCCGGGCATAAAGGAATGAGAAGGAGACACCTCATCAAAGAAGGCTaGGGACTCAGAGGCTTCCTT +
Preference number: 4 (lower is better)
Translates to: KHQGKSQVAGHKGMRRRHLIKEG*GLRGFL
Trigger: AAGGAAGCCTCTGAGTCCTCAGCCTTCTTTGATGAG...GTGTCTCCTTCTCATTCCTTTATGCCCGGCCACCTGGGACTTACCCTGGTGCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR GCA 90 bp GGTAAGTCCCAGGTGGCCGGGCATAAAGGAATGAGAAGGAGACACTCAGCTGGCGTCACCTTCAGGAACTaGCAGAGTATCTTCTCGCAT +
Preference number: 4 (lower is better)
Translates to: GKSQVAGHKGMRRRHSAGVTFRN*QSIFSH
Trigger: ATGCGAGAAGATACTCTGGCAGTTCCTGAAGGTGAC...GCCAGCTGAGTGTCTCCTTCTCATTCCTTTATGCCCGGCCACCTGGGACTTACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR CCA 90 bp TTAGACACTCTGGCGCAGACCCTGCTGGGCTGCTACATTAGAGAGAGTAAGGTTGGGGGTTCTGTGACTTaGGTCCAGGTGTCATTGGGA +
Preference number: 4 (lower is better)
Translates to: LDTLAQTLLGCYIRESKVGGSVT*VQVSLG
Trigger: TCCCAATGACACCTGGACCCAAGTCACAGAACCCCC...AACCTTACTCTCTCTAATGTAGCAGCCCAGCAGGGTCTGCGCCAGAGTGTCTAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR CCA 90 bp CACCTCTCAGGTGGAAGCACCAGGGTAAGTCCCAGGTGGCCGGGCATAAAGGAATTCATCCTGCTGCTGTaGCTGCTGACTTTAATGATG +
Preference number: 4 (lower is better)
Translates to: HLSGGSTRVSPRWPGIKEFILLL*LLTLMM
Trigger: CATCATTAAAGTCAGCAGCCACAGCAGCAGGATGAA...TTCCTTTATGCCCGGCCACCTGGGACTTACCCTGGTGCTTCCACCTGAGAGGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR CCA 90 bp AAGCACCAGGGTAAGTCCCAGGTGGCCGGGCATAAAGGAATGAGAAGGAGACACACAGCACTAACTGAGTaGCTATGTCTGGGTTCCAGG +
Preference number: 4 (lower is better)
Translates to: KHQGKSQVAGHKGMRRRHTALTE*LCLGSR
Trigger: CCTGGAACCCAGACATAGCCACTCAGTTAGTGCTGT...GTGTCTCCTTCTCATTCCTTTATGCCCGGCCACCTGGGACTTACCCTGGTGCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR TCA 90 bp CTCAGGTGGAAGCACCAGGGTAAGTCCCAGGTGGCCGGGCATAAAGGAATGAGAGGTTCAAATCCCAAATaGAGATCTCAGAGTCACTGG +
Preference number: 4 (lower is better)
Translates to: LRWKHQGKSQVAGHKGMRGSNPK*RSQSHW
Trigger: CCAGTGACTCTGAGATCTTCATTTGGGATTTGAACC...TCTCATTCCTTTATGCCCGGCCACCTGGGACTTACCCTGGTGCTTCCACCTGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR GCA 90 bp AACAGAATGCCCCAGGTTAGACACTCTGGCGCAGACCCTGCTGGGCTGCTACATTTTCCAGAAGCCCACTaGCAAAGCTTCCCCATATTA +
Preference number: 4 (lower is better)
Translates to: NRMPQVRHSGADPAGLLHFPEAH*QSFPIL
Trigger: TAATATGGGGAAGCTTTGGCAGTGGGCTTCTGGAAA...ATGTAGCAGCCCAGCAGGGTCTGCGCCAGAGTGTCTAACCTGGGGCATTCTGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR CCA 90 bp AGGTGGAAGCACCAGGGTAAGTCCCAGGTGGCCGGGCATAAAGGAATGAGAAGGCCTGAAGAAAGGACGTaGGTCACATTGTATAGAGTC +
Preference number: 4 (lower is better)
Translates to: RWKHQGKSQVAGHKGMRRPEERT*VTLYRV
Trigger: GACTCTATACAATGTGACCCACGTCCTTTCTTCAGG...CCTTCTCATTCCTTTATGCCCGGCCACCTGGGACTTACCCTGGTGCTTCCACCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR CCA 90 bp AACAGAATGCCCCAGGTTAGACACTCTGGCGCAGACCCTGCTGGGCTGCTACATTTCCAGCAAAAGATCTaGCTGTCTTTGGCAGTGCTA +
Preference number: 4 (lower is better)
Translates to: NRMPQVRHSGADPAGLLHFQQKI*LSLAVL
Trigger: TAGCACTGCCAAAGACAGCCAGATCTTTTGCTGGAA...ATGTAGCAGCCCAGCAGGGTCTGCGCCAGAGTGTCTAACCTGGGGCATTCTGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR CCA 90 bp AATAATAGCACTGTTTACTCTCTCGGAAGCCATGTGAACAGAATGCCCCAGGTTCCTTGGCAGTGTGTTTaGAGGCCTGGGCGCAAGGGC +
Preference number: 4 (lower is better)
Translates to: NNSTVYSLGSHVNRMPQVPWQCV*RPGRKG
Trigger: GCCCTTGCGCCCAGGCCTCCAAACACACTGCCAAGG...AACCTGGGGCATTCTGTTCACATGGCTTCCGAGAGAGTAAACAGTGCTATTATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR CCA 90 bp ACTCTGGCGCAGACCCTGCTGGGCTGCTACATTAGAGAGAGTAAGGTTCAACTCGCCACAGAATCCAGCTaGGTTTACAGCTGGAACACT +
Preference number: 4 (lower is better)
Translates to: TLAQTLLGCYIRESKVQLATESS*VYSWNT
Trigger: AGTGTTCCAGCTGTAAACCCAGCTGGATTCTGTGGC...GAGTTGAACCTTACTCTCTCTAATGTAGCAGCCCAGCAGGGTCTGCGCCAGAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR TCA 90 bp CATGTGAACAGAATGCCCCAGGTTAGACACTCTGGCGCAGACCCTGCTGGGCTGCCAGAGAAGGGTCCCTaGAATCAATCTCAAATATTT +
Preference number: 4 (lower is better)
Translates to: HVNRMPQVRHSGADPAGLPEKGP*NQSQIF
Trigger: AAATATTTGAGATTGATTTCAGGGACCCTTCTCTGG...CAGCCCAGCAGGGTCTGCGCCAGAGTGTCTAACCTGGGGCATTCTGTTCACATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR GCA 90 bp ATGAGAAGGAGACACTCAGCTGGCGTGGGGCCAAGCCCCCAGTGTCACATACCTTTAGCTTGTGAAACCTaGTGGAGACAGAAAGAATTC +
Preference number: 4 (lower is better)
Translates to: MRRRHSAGVGPSPQCHIPLACET*WRQKEF
Trigger: GAATTCTTTCTGTCTCCAGCAGGTTTCACAAGCTAA...AGGTATGTGACACTGGGGGCTTGGCCCCACGCCAGCTGAGTGTCTCCTTCTCAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR CCA 90 bp GGAAGCCATGTGAACAGAATGCCCCAGGTTAGACACTCTGGCGCAGACCCTGCTGCTTGTGAAACCTGCTaGAGACAGAAAGAATTCCTT +
Preference number: 4 (lower is better)
Translates to: GSHVNRMPQVRHSGADPAACETC*RQKEFL
Trigger: AAGGAATTCTTTCTGTCTCCAGCAGGTTTCACAAGC...AGCAGGGTCTGCGCCAGAGTGTCTAACCTGGGGCATTCTGTTCACATGGCTTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR CCA 90 bp GGTAAGTCCCAGGTGGCCGGGCATAAAGGAATGAGAAGGAGACACTCAGCTGGCATTGGGACACTCAGGTaGTTCAAATCCCAAATGAAG +
Preference number: 4 (lower is better)
Translates to: GKSQVAGHKGMRRRHSAGIGTLR*FKSQMK
Trigger: CTTCATTTGGGATTTGAACCACCTGAGTGTCCCAAT...GCCAGCTGAGTGTCTCCTTCTCATTCCTTTATGCCCGGCCACCTGGGACTTACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR CCA 90 bp TTAGACACTCTGGCGCAGACCCTGCTGGGCTGCTACATTAGAGAGAGTAAGGTTAGGAGATTGGCATACTaGGTGAGCCTGTGTGTTGTG +
Preference number: 4 (lower is better)
Translates to: LDTLAQTLLGCYIRESKVRRLAY*VSLCVV
Trigger: CACAACACACAGGCTCACCCAGTATGCCAATCTCCT...AACCTTACTCTCTCTAATGTAGCAGCCCAGCAGGGTCTGCGCCAGAGTGTCTAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR CCA 90 bp ACTCTGGCGCAGACCCTGCTGGGCTGCTACATTAGAGAGAGTAAGGTTCAACTCAGCTGTAATTGGTGCTaGAGGCATGAATGTCTCAGG +
Preference number: 4 (lower is better)
Translates to: TLAQTLLGCYIRESKVQLSCNWC*RHECLR
Trigger: CCTGAGACATTCATGCCTCCAGCACCAATTACAGCT...GAGTTGAACCTTACTCTCTCTAATGTAGCAGCCCAGCAGGGTCTGCGCCAGAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR CCA 90 bp ACTCTGGCGCAGACCCTGCTGGGCTGCTACATTAGAGAGAGTAAGGTTCAACTCAAGCGGAGCTGTAATTaGTGCTGGAGGCATGAATGT +
Preference number: 4 (lower is better)
Translates to: TLAQTLLGCYIRESKVQLKRSCN*CWRHEC
Trigger: ACATTCATGCCTCCAGCACCAATTACAGCTCCGCTT...GAGTTGAACCTTACTCTCTCTAATGTAGCAGCCCAGCAGGGTCTGCGCCAGAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR TCA 90 bp TTAGACACTCTGGCGCAGACCCTGCTGGGCTGCTACATTAGAGAGAGTAAGGTTCAGGGAGTCATGTTCTaGGGTATCAGCTCATCAAAG +
Preference number: 4 (lower is better)
Translates to: LDTLAQTLLGCYIRESKVQGVMF*GISSSK
Trigger: CTTTGATGAGCTGATACCTCAGAACATGACTCCCTG...AACCTTACTCTCTCTAATGTAGCAGCCCAGCAGGGTCTGCGCCAGAGTGTCTAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR TCA 90 bp AATAATAGCACTGTTTACTCTCTCGGAAGCCATGTGAACAGAATGCCCCAGGTTGACTCTGTGATGACTTaGCTGATGAAGACAGGGCGG +
Preference number: 4 (lower is better)
Translates to: NNSTVYSLGSHVNRMPQVDSVMT*LMKTGR
Trigger: CCGCCCTGTCTTCATCAGTCAAGTCATCACAGAGTC...AACCTGGGGCATTCTGTTCACATGGCTTCCGAGAGAGTAAACAGTGCTATTATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR TCA 90 bp AATAATAGCACTGTTTACTCTCTCGGAAGCCATGTGAACAGAATGCCCCAGGTTGAGCCCCCTTCTGTATaGCGATGTCTCTTTGGAGTG +
Preference number: 4 (lower is better)
Translates to: NNSTVYSLGSHVNRMPQVEPPSV*RCLFGV
Trigger: CACTCCAAAGAGACATCGTCATACAGAAGGGGGCTC...AACCTGGGGCATTCTGTTCACATGGCTTCCGAGAGAGTAAACAGTGCTATTATT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR CCA 90 bp AATAATAGCACTGTTTACTCTCTCGGAAGCCATGTGAACAGAATGCCCCAGGTTGGCAGCTTTTTCCTTTaGAGGTTTCCCTGGGAGGCT +
Preference number: 4 (lower is better)
Translates to: NNSTVYSLGSHVNRMPQVGSFFL*RFPWEA
Trigger: AGCCTCCCAGGGAAACCTCCAAAGGAAAAAGCTGCC...AACCTGGGGCATTCTGTTCACATGGCTTCCGAGAGAGTAAACAGTGCTATTATT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR CCA 90 bp AATAATAGCACTGTTTACTCTCTCGGAAGCCATGTGAACAGAATGCCCCAGGTTGCCAGGAGATTGCCCTaGAAAGGATTAAAGTCCAAG +
Preference number: 4 (lower is better)
Translates to: NNSTVYSLGSHVNRMPQVARRLP*KGLKSK
Trigger: CTTGGACTTTAATCCTTTCCAGGGCAATCTCCTGGC...AACCTGGGGCATTCTGTTCACATGGCTTCCGAGAGAGTAAACAGTGCTATTATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS GCA 90 bp GTCCTGGGGTCCTGGACAAGTGGCCAAGATGCCAGAGCTCGGGAGTaGACTAGAGCACGGTGCTCTTGGACCTCCAGGAGGGGGAGCCAC +
Preference number: 5 (lower is better)
Translates to: VLGSWTSGQDARARE*TRARCSWTSRRGSH
Trigger: GTGGCTCCCCCTCCTGGAGGTCCAAGAGCACCGTGCTCTAGTGCACTCCCGAGCTCTGGCATCTTGGCCACTTGTCCAGGACCCCAGGAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS GCA 90 bp CTGAAGCTGCTGCAGCCCGCCACCTGCGCATGCACCGCGAGGCCCTaGTCAAAGCTTCCGGCATCCACACATCGGGCAACTTCATGGAGC +
Preference number: 5 (lower is better)
Translates to: LKLLQPATCACTARP*SKLPASTHRATSWS
Trigger: GCTCCATGAAGTTGCCCGATGTGTGGATGCCGGAAGCTTTGAGCAGGGCCTCGCGGTGCATGCGCAGGTGGCGGGCTGCAGCAGCTTCAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS GCA 90 bp AAGCTGGATACCTCGCTGAAGCTGCTGCAGCCCGCCACCTGCGCATaGACCGCGAGGCCCTGCTCAAAGCTTCCGGCATCCACACATCGG +
Preference number: 5 (lower is better)
Translates to: KLDTSLKLLQPATCA*TARPCSKLPASTHR
Trigger: CCGATGTGTGGATGCCGGAAGCTTTGAGCAGGGCCTCGCGGTGCATGCGCAGGTGGCGGGCTGCAGCAGCTTCAGCGAGGTATCCAGCTT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS CCA 90 bp CAGATGGGTAGAGCCGGGCTGCATGAAGTCTGGGGACGCCATGACTaGAGTGGGGCCAGGAAGAGGCCATGCGCCACAGAATCCAGCTGG +
Preference number: 5 (lower is better)
Translates to: QMGRAGLHEVWGRHD*SGARKRPCATESSW
Trigger: CCAGCTGGATTCTGTGGCGCATGGCCTCTTCCTGGCCCCACTCCAGTCATGGCGTCCCCAGACTTCATGCAGCCCGGCTCTACCCATCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS-3UTR CAA 90 bp GAGTTGCTGCAGGCTGCATTCTCTTGGGGCTCCAGGAGGAGGCAGGGTCGCACTGGACCCTGTGGTCACTaGAGCCCTGAGAAGGGCTGG +
Preference number: 5 (lower is better)
Translates to: ELLQAAFSWGSRRRQGRTGPCGH*SPEKGW
Trigger: CCAGCCCTTCTCAGGGCTCAAGTGACCACAGGGTCC...AGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAGCAACTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165758.2
CDS CCA 90 bp TCGGCATCGGCCTGGTTCCAGGACATCGACAAGATGCCCCTGCTGTaGCTCTCCAGCACCTTCAAGGGTGACGAAGCGAAGCGCAGGTCC +
Preference number: 5 (lower is better)
Translates to: SASAWFQDIDKMPLL*LSSTFKGDEAKRRS
Trigger: GGACCTGCGCTTCGCTTCGTCACCCTTGAAGGTGCTGGAGAGCCACAGCAGGGGCATCTTGTCGATGTCCTGGAACCAGGCCGATGCCGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS CCA 90 bp TCTAGGAGTTTCAGGCAGATGGGTAGAGCCGGGCTGCATGAAGTCTaGGGACGCCATGACTGGAGTGGGGCCAGGAAGAGGCCATGCGCC +
Preference number: 5 (lower is better)
Translates to: SRSFRQMGRAGLHEV*GRHDWSGARKRPCA
Trigger: GGCGCATGGCCTCTTCCTGGCCCCACTCCAGTCATGGCGTCCCCAGACTTCATGCAGCCCGGCTCTACCCATCTGCCTGAAACTCCTAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS GCA 90 bp GCAGTTCGGCATCGGCCTGGTTCCAGGACATCGACAAGATGCCCCTaGTGTGGCTCTCCAGCACCTTCAAGGGTGACGAAGCGAAGCGCA +
Preference number: 5 (lower is better)
Translates to: AVRHRPGSRTSTRCP*CGSPAPSRVTKRSA
Trigger: TGCGCTTCGCTTCGTCACCCTTGAAGGTGCTGGAGAGCCACAGCAGGGGCATCTTGTCGATGTCCTGGAACCAGGCCGATGCCGAACTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS-3UTR CAA 90 bp CATGTGAACAGAATGCCCCAGGTTAGACACTCTGGCGCAGACCCTGCTGGGCTGTCCTTGGCAGTGTGTTaGGAGGCCTGGGCGCAAGGG +
Preference number: 5 (lower is better)
Translates to: HVNRMPQVRHSGADPAGLSLAVC*EAWAQG
Trigger: CCCTTGCGCCCAGGCCTCCAAACACACTGCCAAGGA...CAGCCCAGCAGGGTCTGCGCCAGAGTGTCTAACCTGGGGCATTCTGTTCACATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS GCA 90 bp TTGGGAGGCTTCTTCAAGGGAGGGATGAGTGATGCTTGGGCCACCTaGTCAGGCACCTTGTCAGCCTGCCTCATGTGCTGGGCTTCCCAG +
Preference number: 5 (lower is better)
Translates to: LGGFFKGGMSDAWAT*SGTLSACLMCWASQ
Trigger: CTGGGAAGCCCAGCACATGAGGCAGGCTGACAAGGTGCCTGAGCAGGTGGCCCAAGCATCACTCATCCCTCCCTTGAAGAAGCCTCCCAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS GCA 90 bp AGAGGGAGGAGTCTAGGAGTTTCAGGCAGATGGGTAGAGCCGGGCTaGATGAAGTCTGGGGACGCCATGACTGGAGTGGGGCCAGGAAGA +
Preference number: 5 (lower is better)
Translates to: RGRSLGVSGRWVEPG*MKSGDAMTGVGPGR
Trigger: TCTTCCTGGCCCCACTCCAGTCATGGCGTCCCCAGACTTCATGCAGCCCGGCTCTACCCATCTGCCTGAAACTCCTAGACTCCTCCCTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS GCA 90 bp ACAAGTGGCCAAGATGCCAGAGCTCGGGAGTGCACTAGAGCACGGTaGTCTTGGACCTCCAGGAGGGGGAGCCACAGAGAAAGTGACAGG +
Preference number: 5 (lower is better)
Translates to: TSGQDARARECTRAR*SWTSRRGSHRESDR
Trigger: CCTGTCACTTTCTCTGTGGCTCCCCCTCCTGGAGGTCCAAGAGCACCGTGCTCTAGTGCACTCCCGAGCTCTGGCATCTTGGCCACTTGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS CCA 90 bp GCTTGGGCCACCTGCTCAGGCACCTTGTCAGCCTGCCTCATGTGCTaGGCTTCCCAGCTCCTACCCATCACAGAGCACAAACTGATCCAG +
Preference number: 5 (lower is better)
Translates to: AWATCSGTLSACLMC*ASQLLPITEHKLIQ
Trigger: CTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAGGTGCCTGAGCAGGTGGCCCAAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS CCA 90 bp CGCATCCACTTGGGAGGCTTCTTCAAGGGAGGGATGAGTGATGCTTaGGCCACCTGCTCAGGCACCTTGTCAGCCTGCCTCATGTGCTGG +
Preference number: 5 (lower is better)
Translates to: RIHLGGFFKGGMSDA*ATCSGTLSACLMCW
Trigger: CCAGCACATGAGGCAGGCTGACAAGGTGCCTGAGCAGGTGGCCCAAGCATCACTCATCCCTCCCTTGAAGAAGCCTCCCAAGTGGATGCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS GCA 90 bp GATGCTTGGGCCACCTGCTCAGGCACCTTGTCAGCCTGCCTCATGTaGTGGGCTTCCCAGCTCCTACCCATCACAGAGCACAAACTGATC +
Preference number: 5 (lower is better)
Translates to: DAWATCSGTLSACLM*WASQLLPITEHKLI
Trigger: GATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAGGTGCCTGAGCAGGTGGCCCAAGCATC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS GCA 90 bp GGCTTCCTTGGCAGTGTGTTTGGAGGCCTGGGCGCAAGGGCTGTGTaGTCTGTCACTTTTGAGGTCAACCGCCTCAAGCTGAGGGCTTTC +
Preference number: 5 (lower is better)
Translates to: GFLGSVFGGLGARAV*SVTFEVNRLKLRAF
Trigger: GAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAGGCCTCCAAACACACTGCCAAGGAAGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS CCA 90 bp ATCTGGCTGTCTTTGGCAGTGCTAAGCAGCAGTTCGGCATCGGCCTaGTTCCAGGACATCGACAAGATGCCCCTGCTGTGGCTCTCCAGC +
Preference number: 5 (lower is better)
Translates to: IWLSLAVLSSSSASA*FQDIDKMPLLWLSS
Trigger: GCTGGAGAGCCACAGCAGGGGCATCTTGTCGATGTCCTGGAACCAGGCCGATGCCGAACTGCTGCTTAGCACTGCCAAAGACAGCCAGAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS CCA 90 bp AAGGCTGAGGACTCAGAGGCTTCCTTGGCAGTGTGTTTGGAGGCCTaGGCGCAAGGGCTGTGTGCTCTGTCACTTTTGAGGTCAACCGCC +
Preference number: 5 (lower is better)
Translates to: KAEDSEASLAVCLEA*AQGLCALSLLRSTA
Trigger: GGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAGGCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS CCA 90 bp GTTTCCCTGGGAGGCTGGAGAAACTTTCCAGGAGTCCTGGGGTCCTaGACAAGTGGCCAAGATGCCAGAGCTCGGGAGTGCACTAGAGCA +
Preference number: 5 (lower is better)
Translates to: VSLGGWRNFPGVLGS*TSGQDARARECTRA
Trigger: TGCTCTAGTGCACTCCCGAGCTCTGGCATCTTGGCCACTTGTCCAGGACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS CCA 90 bp CCGGCATCCACACATCGGGCAACTTCATGGAGCCCAGCCAGGACGTaGGGCGAGAGTGTCCCCTCGCAAAGCTTCTCATACAGACATTCT +
Preference number: 5 (lower is better)
Translates to: PASTHRATSWSPART*GESVPSQSFSYRHS
Trigger: AGAATGTCTGTATGAGAAGCTTTGCGAGGGGACACTCTCGCCCCACGTCCTGGCTGGGCTCCATGAAGTTGCCCGATGTGTGGATGCCGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS-3UTR CAA 90 bp ACTCTGGCGCAGACCCTGCTGGGCTGCTACATTAGAGAGAGTAAGGTTCAACTCGGCCGGGCTCCACGCTaGGACAGCTGGCTTCTCAAG +
Preference number: 5 (lower is better)
Translates to: TLAQTLLGCYIRESKVQLGRAPR*DSWLLK
Trigger: CTTGAGAAGCCAGCTGTCCAAGCGTGGAGCCCGGCC...GAGTTGAACCTTACTCTCTCTAATGTAGCAGCCCAGCAGGGTCTGCGCCAGAGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR CAA 90 bp TTCAACTCTGAGCATCACCTCTCAGGTGGAAGCACCAGGGTAAGTCCCAGGTGGGGACCCTGTGGTCACTaGAGCCCTGAGAAGGGCTGG +
Preference number: 5 (lower is better)
Translates to: FNSEHHLSGGSTRVSPRWGPCGH*SPEKGW
Trigger: CCAGCCCTTCTCAGGGCTCAAGTGACCACAGGGTCC...CCACCTGGGACTTACCCTGGTGCTTCCACCTGAGAGGTGATGCTCAGAGTTGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS TCA 90 bp GGCTCATTCTTTCTGAGATCCCACACCACCGCCTTGCCGCTGGGGTaGGCGGAAGCCAGGATGTGCTGGACTTGGAGGTTCCAAGACAAT +
Preference number: 5 (lower is better)
Translates to: GSFFLRSHTTALPLG*AEARMCWTWRFQDN
Trigger: ATTGTCTTGGAACCTCCAAGTCCAGCACATCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS GCA 90 bp ACACGGGAGGGCTCTGAGGGCACCACTGAACATCAAAGCACCAGCTaGTCTGTGTGGGCAGCTTGTAGACCACCTCACTGCTTGACAGGT +
Preference number: 5 (lower is better)
Translates to: TREGSEGTTEHQSTS*SVWAACRPPHCLTG
Trigger: ACCTGTCAAGCAGTGAGGTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS CCA 90 bp ATACAGTCGCTGGGTAGGAAGCTCATAGCAGTGGCTAGGCTGCCCTaGGCTGCCAGGAGATTGGCATACTGGGTGAGCCTGTGTGTTGTG +
Preference number: 5 (lower is better)
Translates to: IQSLGRKLIAVARLP*AARRLAYWVSLCVV
Trigger: CACAACACACAGGCTCACCCAGTATGCCAATCTCCTGGCAGCCCAGGGCAGCCTAGCCACTGCTATGAGCTTCCTACCCAGCGACTGTAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS-3UTR CAA 90 bp AGGTGGAAGCACCAGGGTAAGTCCCAGGTGGCCGGGCATAAAGGAATGAGAAGGGGCCTTCGCATCCACTaGGGAGGCTTCTTCAAGGGA +
Preference number: 5 (lower is better)
Translates to: RWKHQGKSQVAGHKGMRRGLRIH*GGFFKG
Trigger: TCCCTTGAAGAAGCCTCCCAAGTGGATGCGAAGGCC...CCTTCTCATTCCTTTATGCCCGGCCACCTGGGACTTACCCTGGTGCTTCCACCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR CAA 90 bp GGAAGCCATGTGAACAGAATGCCCCAGGTTAGACACTCTGGCGCAGACCCTGCTAGGCAGTGGCTGGAGTaGCTGCAGGCTGCATTCTCT +
Preference number: 5 (lower is better)
Translates to: GSHVNRMPQVRHSGADPARQWLE*LQAAFS
Trigger: AGAGAATGCAGCCTGCAGCAACTCCAGCCACTGCCT...AGCAGGGTCTGCGCCAGAGTGTCTAACCTGGGGCATTCTGTTCACATGGCTTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS TCA 90 bp TCATGTGCTGGGCTTCCCAGCTCCTACCCATCACAGAGCACAAACTaGTCCAGCCATCGAAGGAGACAGCAGAGAACACGGGAGGGCTCT +
Preference number: 5 (lower is better)
Translates to: SCAGLPSSYPSQSTN*SSHRRRQQRTREGS
Trigger: AGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS-3UTR CAA 90 bp CATGTGAACAGAATGCCCCAGGTTAGACACTCTGGCGCAGACCCTGCTGGGCTGTGTGCTCTGTCACTTTaGAGGTCAACCGCCTCAAGC +
Preference number: 5 (lower is better)
Translates to: HVNRMPQVRHSGADPAGLCALSL*RSTASS
Trigger: GCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACA...CAGCCCAGCAGGGTCTGCGCCAGAGTGTCTAACCTGGGGCATTCTGTTCACATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR CAA 90 bp TTAGACACTCTGGCGCAGACCCTGCTGGGCTGCTACATTAGAGAGAGTAAGGTTTGGGAGCTCAGAGGGTaGGGACCTGGTGGTCCCACA +
Preference number: 5 (lower is better)
Translates to: LDTLAQTLLGCYIRESKVWELRG*GPGGPT
Trigger: TGTGGGACCACCAGGTCCCAACCCTCTGAGCTCCCA...AACCTTACTCTCTCTAATGTAGCAGCCCAGCAGGGTCTGCGCCAGAGTGTCTAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR CAA 90 bp AACAGAATGCCCCAGGTTAGACACTCTGGCGCAGACCCTGCTGGGCTGCTACATAGGCAGCTTTTTCCTTaGGAGGTTTCCCTGGGAGGC +
Preference number: 5 (lower is better)
Translates to: NRMPQVRHSGADPAGLLHRQLFP*EVSLGG
Trigger: GCCTCCCAGGGAAACCTCCAAAGGAAAAAGCTGCCT...ATGTAGCAGCCCAGCAGGGTCTGCGCCAGAGTGTCTAACCTGGGGCATTCTGTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS TCA 90 bp TGCAGCACAACTGACCGAGTCAGGACTTCTGACTCTGTGATGACTTaGCTGATGAAGACAGGGCGGGAACAAGCCTGTGCCACTGGCTGG +
Preference number: 5 (lower is better)
Translates to: CSTTDRVRTSDSVMT*LMKTGREQACATGW
Trigger: CCAGCCAGTGGCACAGGCTTGTTCCCGCCCTGTCTTCATCAGTCAAGTCATCACAGAGTCAGAAGTCCTGACTCGGTCAGTTGTGCTGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS TCA 90 bp CTCCCAGGGAGTCATGTTCTGAGGTATCAGCTCATCAAAGAAGGCTaGGGACTCAGAGGCTTCCTTGGCAGTGTGTTTGGAGGCCTGGGC +
Preference number: 5 (lower is better)
Translates to: LPGSHVLRYQLIKEG*GLRGFLGSVFGGLG
Trigger: GCCCAGGCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS GCA 90 bp CTCTGTGATGACTTGACTGATGAAGACAGGGCGGGAACAAGCCTGTaGCACTGGCTGGACAGGGATGCTGGGAAGGCCAAAAGTAACCAG +
Preference number: 5 (lower is better)
Translates to: LCDDLTDEDRAGTSL*HWLDRDAGKAKSNQ
Trigger: CTGGTTACTTTTGGCCTTCCCAGCATCCCTGTCCAGCCAGTGGCACAGGCTTGTTCCCGCCCTGTCTTCATCAGTCAAGTCATCACAGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS CCA 90 bp GGCCTGTTGTGGCTCAGGGCCAAGGCTCCTAAGCGGAGCTGTAATTaGTGCTGGAGGCATGAATGTCTCAGGCAGCTTTTTCCTTTGGAG +
Preference number: 5 (lower is better)
Translates to: GLLWLRAKAPKRSCN*CWRHECLRQLFPLE
Trigger: CTCCAAAGGAAAAAGCTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS-3UTR CAA 90 bp GGAAGCCATGTGAACAGAATGCCCCAGGTTAGACACTCTGGCGCAGACCCTGCTAGAGTCAGTGTGCCGTaGTCTCCTCCACCAGCAATA +
Preference number: 5 (lower is better)
Translates to: GSHVNRMPQVRHSGADPARVSVP*SPPPAI
Trigger: TATTGCTGGTGGAGGAGACAACGGCACACTGACTCT...AGCAGGGTCTGCGCCAGAGTGTCTAACCTGGGGCATTCTGTTCACATGGCTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR CAA 90 bp GGAAGCCATGTGAACAGAATGCCCCAGGTTAGACACTCTGGCGCAGACCCTGCTCCTGAGGCCAGGAGATaGCCCTGGAAAGGATTAAAG +
Preference number: 5 (lower is better)
Translates to: GSHVNRMPQVRHSGADPAPEARR*PWKGLK
Trigger: CTTTAATCCTTTCCAGGGCAATCTCCTGGCCTCAGG...AGCAGGGTCTGCGCCAGAGTGTCTAACCTGGGGCATTCTGTTCACATGGCTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS TCA 90 bp TGTGTTTGGAGGCCTGGGCGCAAGGGCTGTGTGCTCTGTCACTTTTaGGGTCAACCGCCTCAAGCTGAGGGCTTTCCTGTGATTTTGAGT +
Preference number: 5 (lower is better)
Translates to: CVWRPGRKGCVLCHF*GQPPQAEGFPVILS
Trigger: ACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAGGCCTCCAAACACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS-3UTR CAA 90 bp ACTCTGGCGCAGACCCTGCTGGGCTGCTACATTAGAGAGAGTAAGGTTCAACTCTGGGTCCAGGTGTCATaGGGACACTCAGGTGGTTCA +
Preference number: 5 (lower is better)
Translates to: TLAQTLLGCYIRESKVQLWVQVS*GHSGGS
Trigger: TGAACCACCTGAGTGTCCCAATGACACCTGGACCCA...GAGTTGAACCTTACTCTCTCTAATGTAGCAGCCCAGCAGGGTCTGCGCCAGAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS TCA 90 bp TGGGTCCAGGTGTCATTGGGACACTCAGGTGGTTCAAATCCCAAATaGAGATCTCAGAGTCACTGGCTCCTGAGGCCAGGAGATTGCCCT +
Preference number: 5 (lower is better)
Translates to: WVQVSLGHSGGSNPK*RSQSHWLLRPGDCP
Trigger: AGGGCAATCTCCTGGCCTCAGGAGCCAGTGACTCTGAGATCTTCATTTGGGATTTGAACCACCTGAGTGTCCCAATGACACCTGGACCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS CCA 90 bp TTGTGGCTCAGGGCCAAGGCTCCTAAGCGGAGCTGTAATTGGTGCTaGAGGCATGAATGTCTCAGGCAGCTTTTTCCTTTGGAGGTTTCC +
Preference number: 5 (lower is better)
Translates to: LWLRAKAPKRSCNWC*RHECLRQLFPLEVS
Trigger: GGAAACCTCCAAAGGAAAAAGCTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS-3UTR CAA 90 bp TTCAACTCTGAGCATCACCTCTCAGGTGGAAGCACCAGGGTAAGTCCCAGGTGGAGACCACCTCACTGCTaGACAGGTTCCAGCAAAAGA +
Preference number: 5 (lower is better)
Translates to: FNSEHHLSGGSTRVSPRWRPPHC*TGSSKR
Trigger: TCTTTTGCTGGAACCTGTCAAGCAGTGAGGTGGTCT...CCACCTGGGACTTACCCTGGTGCTTCCACCTGAGAGGTGATGCTCAGAGTTGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS-3UTR CAA 90 bp TTAGACACTCTGGCGCAGACCCTGCTGGGCTGCTACATTAGAGAGAGTAAGGTTAGGCTTGCTGGAATTTaGCCCAGCTCTCTACCAGCC +
Preference number: 5 (lower is better)
Translates to: LDTLAQTLLGCYIRESKVRLAGI*PSSLPA
Trigger: GGCTGGTAGAGAGCTGGGCAAAATTCCAGCAAGCCT...AACCTTACTCTCTCTAATGTAGCAGCCCAGCAGGGTCTGCGCCAGAGTGTCTAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS CCA 90 bp TTCTGTTTCTGGGCAATCAGGGGCTCCTTCCCTGAAGAAAGGACGTaGGTCACATTGTATAGAGTCAGTGTGCCGTTGTCTCCTCCACCA +
Preference number: 5 (lower is better)
Translates to: FCFWAIRGSFPEERT*VTLYRVSVPLSPPP
Trigger: TGGTGGAGGAGACAACGGCACACTGACTCTATACAATGTGACCCACGTCCTTTCTTCAGGGAAGGAGCCCCTGATTGCCCAGAAACAGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS CCA 90 bp ATGAAGATCTCAGAGTCACTGGCTCCTGAGGCCAGGAGATTGCCCTaGAAAGGATTAAAGTCCAAGGCTCTGACAGCTCCAGTGTGCTTC +
Preference number: 5 (lower is better)
Translates to: MKISESLAPEARRLP*KGLKSKALTAPVCF
Trigger: GAAGCACACTGGAGCTGTCAGAGCCTTGGACTTTAATCCTTTCCAGGGCAATCTCCTGGCCTCAGGAGCCAGTGACTCTGAGATCTTCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS CCA 90 bp GTAATTGGTGCTGGAGGCATGAATGTCTCAGGCAGCTTTTTCCTTTaGAGGTTTCCCTGGGAGGCTGGAGAAACTTTCCAGGAGTCCTGG +
Preference number: 5 (lower is better)
Translates to: VIGAGGMNVSGSFFL*RFPWEAGETFQESW
Trigger: CCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAGCTGCCTGAGACATTCATGCCTCCAGCACCAATTAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS-3UTR CAA 90 bp TTAGACACTCTGGCGCAGACCCTGCTGGGCTGCTACATTAGAGAGAGTAAGGTTAGGACGTGGGTCACATaGTATAGAGTCAGTGTGCCG +
Preference number: 5 (lower is better)
Translates to: LDTLAQTLLGCYIRESKVRTWVT*YRVSVP
Trigger: CGGCACACTGACTCTATACAATGTGACCCACGTCCT...AACCTTACTCTCTCTAATGTAGCAGCCCAGCAGGGTCTGCGCCAGAGTGTCTAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS GCA 90 bp AGTCACTCTTCAGGCAAGTGTCCACCTTCTTCTGAAGTTCCTCTCTaGTGTAACCTAACAGCCCAAGGAACTTCGGCCTGGAATCCTGCT +
Preference number: 5 (lower is better)
Translates to: SHSSGKCPPSSEVPL*CNLTAQGTSAWNPA
Trigger: AGCAGGATTCCAGGCCGAAGTTCCTTGGGCTGTTAGGTTACAGCAGAGAGGAACTTCAGAAGAAGGTGGACACTTGCCTGAAGAGTGACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS CCA 90 bp GAAGTTCCTCTCTGCTGTAACCTAACAGCCCAAGGAACTTCGGCCTaGAATCCTGCTCTAAGGTCACCTTCAGGAACTGCCAGAGTATCT +
Preference number: 5 (lower is better)
Translates to: EVPLCCNLTAQGTSA*NPALRSPSGTARVS
Trigger: AGATACTCTGGCAGTTCCTGAAGGTGACCTTAGAGCAGGATTCCAGGCCGAAGTTCCTTGGGCTGTTAGGTTACAGCAGAGAGGAACTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS-3UTR CAA 90 bp AATAATAGCACTGTTTACTCTCTCGGAAGCCATGTGAACAGAATGCCCCAGGTTAGAAGCGAGGAGGTTTaGGTTCTCCTCTTGGCTAGG +
Preference number: 5 (lower is better)
Translates to: NNSTVYSLGSHVNRMPQVRSEEV*VLLLAR
Trigger: CCTAGCCAAGAGGAGAACCAAAACCTCCTCGCTTCT...AACCTGGGGCATTCTGTTCACATGGCTTCCGAGAGAGTAAACAGTGCTATTATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS GCA 72 bp ACCTCGCTGAAGCTGCTGCAGCCCGCCACCTGCGCATaGACCGCGAGGCCCTGCTCAAAGCTTCCGGCATCC +
Preference number: 6 (lower is better)
Translates to: TSLKLLQPATCA*TARPCSKLPAS
Trigger: GGATGCCGGAAGCTTTGAGCAGGGCCTCGCGGTGCATGCGCAGGTGGCGGGCTGCAGCAGCTTCAGCGAGGT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS GCA 72 bp CTGCAGCCCGCCACCTGCGCATGCACCGCGAGGCCCTaGTCAAAGCTTCCGGCATCCACACATCGGGCAACT +
Preference number: 6 (lower is better)
Translates to: LQPATCACTARP*SKLPASTHRAT
Trigger: AGTTGCCCGATGTGTGGATGCCGGAAGCTTTGAGCAGGGCCTCGCGGTGCATGCGCAGGTGGCGGGCTGCAG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS CCA 72 bp AGAGCCGGGCTGCATGAAGTCTGGGGACGCCATGACTaGAGTGGGGCCAGGAAGAGGCCATGCGCCACAGAA +
Preference number: 6 (lower is better)
Translates to: RAGLHEVWGRHD*SGARKRPCATE
Trigger: TTCTGTGGCGCATGGCCTCTTCCTGGCCCCACTCCAGTCATGGCGTCCCCAGACTTCATGCAGCCCGGCTCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS GCA 72 bp GATGCTTGGGCCACCTGCTCAGGCACCTTGTCAGCCTaGCTCATGTGCTGGGCTTCCCAGCTCCTACCCATC +
Preference number: 6 (lower is better)
Translates to: DAWATCSGTLSA*LMCWASQLLPI
Trigger: GATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAGGTGCCTGAGCAGGTGGCCCAAGCATC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS CCA 72 bp GCCAGAGCTCGGGAGTGCACTAGAGCACGGTGCTCTTaGACCTCCAGGAGGGGGAGCCACAGAGAAAGTGAC +
Preference number: 6 (lower is better)
Translates to: ARARECTRARCS*TSRRGSHRESD
Trigger: GTCACTTTCTCTGTGGCTCCCCCTCCTGGAGGTCCAAGAGCACCGTGCTCTAGTGCACTCCCGAGCTCTGGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS CAA 72 bp CCTGCAGAGCCATGGGGCTCGAGGCTTGCTGGAATTTaGCCCAGCTCTCTACCAGCCGCTCCACACTCCCTG +
Preference number: 6 (lower is better)
Translates to: PAEPWGSRLAGI*PSSLPAAPHSL
Trigger: CAGGGAGTGTGGAGCGGCTGGTAGAGAGCTGGGCAAAATTCCAGCAAGCCTCGAGCCCCATGGCTCTGCAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS GCA 72 bp CAAGATGCCAGAGCTCGGGAGTGCACTAGAGCACGGTaGTCTTGGACCTCCAGGAGGGGGAGCCACAGAGAA +
Preference number: 6 (lower is better)
Translates to: QDARARECTRAR*SWTSRRGSHRE
Trigger: TTCTCTGTGGCTCCCCCTCCTGGAGGTCCAAGAGCACCGTGCTCTAGTGCACTCCCGAGCTCTGGCATCTTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS GCA 72 bp TCCTGGACAAGTGGCCAAGATGCCAGAGCTCGGGAGTaGACTAGAGCACGGTGCTCTTGGACCTCCAGGAGG +
Preference number: 6 (lower is better)
Translates to: SWTSGQDARARE*TRARCSWTSRR
Trigger: CCTCCTGGAGGTCCAAGAGCACCGTGCTCTAGTGCACTCCCGAGCTCTGGCATCTTGGCCACTTGTCCAGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS CCA 72 bp AGGCTGAGGACTCAGAGGCTTCCTTGGCAGTGTGTTTaGAGGCCTGGGCGCAAGGGCTGTGTGCTCTGTCAC +
Preference number: 6 (lower is better)
Translates to: RLRTQRLPWQCV*RPGRKGCVLCH
Trigger: GTGACAGAGCACACAGCCCTTGCGCCCAGGCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS CAA 72 bp GGAGGCTGGAGCCCCCTTCTGTATGACGATGTCTCTTaGGAGTGGAGGGCAGCTCCTACAGCAACTCGGGGG +
Preference number: 6 (lower is better)
Translates to: GGWSPLLYDDVS*EWRAAPTATRG
Trigger: CCCCCGAGTTGCTGTAGGAGCTGCCCTCCACTCCAAAGAGACATCGTCATACAGAAGGGGGCTCCAGCCTCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS TCA 72 bp ACCGGGAGTTGGTCGTCTTCTGAGCACAGCACTAACTaGGTGGCTATGTCTGGGTTCCAGGCCAGGCCCGAG +
Preference number: 6 (lower is better)
Translates to: TGSWSSSEHSTN*VAMSGFQARPE
Trigger: CTCGGGCCTGGCCTGGAACCCAGACATAGCCACTCAGTTAGTGCTGTGCTCAGAAGACGACCAACTCCCGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS TCA 72 bp AGGCCTGGGCGCAAGGGCTGTGTGCTCTGTCACTTTTaGGGTCAACCGCCTCAAGCTGAGGGCTTTCCTGTG +
Preference number: 6 (lower is better)
Translates to: RPGRKGCVLCHF*GQPPQAEGFPV
Trigger: CACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAGGCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS GCA 72 bp CATCGGCCTGGTTCCAGGACATCGACAAGATGCCCCTaGTGTGGCTCTCCAGCACCTTCAAGGGTGACGAAG +
Preference number: 6 (lower is better)
Translates to: HRPGSRTSTRCP*CGSPAPSRVTK
Trigger: CTTCGTCACCCTTGAAGGTGCTGGAGAGCCACAGCAGGGGCATCTTGTCGATGTCCTGGAACCAGGCCGATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS GCA 72 bp GGCAGTGTGTTTGGAGGCCTGGGCGCAAGGGCTGTGTaGTCTGTCACTTTTGAGGTCAACCGCCTCAAGCTG +
Preference number: 6 (lower is better)
Translates to: GSVFGGLGARAV*SVTFEVNRLKL
Trigger: CAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAGGCCTCCAAACACACTGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS CCA 72 bp CAGATGTTCCTGTGGCCAGATACACAGGGTACTGCCTaGCCGGGCTCCACGCTTGGACAGCTGGCTTCTCAA +
Preference number: 6 (lower is better)
Translates to: QMFLWPDTQGTA*PGSTLGQLASQ
Trigger: TTGAGAAGCCAGCTGTCCAAGCGTGGAGCCCGGCCAGGCAGTACCCTGTGTATCTGGCCACAGGAACATCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS CCA 72 bp GCCTGGTTCCAGGACATCGACAAGATGCCCCTGCTGTaGCTCTCCAGCACCTTCAAGGGTGACGAAGCGAAG +
Preference number: 6 (lower is better)
Translates to: AWFQDIDKMPLL*LSSTFKGDEAK
Trigger: CTTCGCTTCGTCACCCTTGAAGGTGCTGGAGAGCCACAGCAGGGGCATCTTGTCGATGTCCTGGAACCAGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS CCA 72 bp ACACATCGGGCAACTTCATGGAGCCCAGCCAGGACGTaGGGCGAGAGTGTCCCCTCGCAAAGCTTCTCATAC +
Preference number: 6 (lower is better)
Translates to: THRATSWSPART*GESVPSQSFSY
Trigger: GTATGAGAAGCTTTGCGAGGGGACACTCTCGCCCCACGTCCTGGCTGGGCTCCATGAAGTTGCCCGATGTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS CAA 72 bp GCCGCTGGGGTGAGCGGAAGCCAGGATGTGCTGGACTaGGAGGTTCCAAGACAATGCCTTGATGTCCTCTGG +
Preference number: 6 (lower is better)
Translates to: AAGVSGSQDVLD*EVPRQCLDVLW
Trigger: CCAGAGGACATCAAGGCATTGTCTTGGAACCTCCAAGTCCAGCACATCCTGGCTTCCGCTCACCCCAGCGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS CAA 72 bp AAGGCTGAGGACTCAGAGGCTTCCTTGGCAGTGTGTTaGGAGGCCTGGGCGCAAGGGCTGTGTGCTCTGTCA +
Preference number: 6 (lower is better)
Translates to: KAEDSEASLAVC*EAWAQGLCALS
Trigger: TGACAGAGCACACAGCCCTTGCGCCCAGGCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS GCA 72 bp TTCTTCAAGGGAGGGATGAGTGATGCTTGGGCCACCTaGTCAGGCACCTTGTCAGCCTGCCTCATGTGCTGG +
Preference number: 6 (lower is better)
Translates to: FFKGGMSDAWAT*SGTLSACLMCW
Trigger: CCAGCACATGAGGCAGGCTGACAAGGTGCCTGAGCAGGTGGCCCAAGCATCACTCATCCCTCCCTTGAAGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS GCA 72 bp GACTTGACTGATGAAGACAGGGCGGGAACAAGCCTGTaGCACTGGCTGGACAGGGATGCTGGGAAGGCCAAA +
Preference number: 6 (lower is better)
Translates to: DLTDEDRAGTSL*HWLDRDAGKAK
Trigger: TTTGGCCTTCCCAGCATCCCTGTCCAGCCAGTGGCACAGGCTTGTTCCCGCCCTGTCTTCATCAGTCAAGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS CCA 72 bp GGAGTTGGTCGTCTTCTGAGCACAGCACTAACTGAGTaGCTATGTCTGGGTTCCAGGCCAGGCCCGAGCAGT +
Preference number: 6 (lower is better)
Translates to: GVGRLLSTALTE*LCLGSRPGPSS
Trigger: ACTGCTCGGGCCTGGCCTGGAACCCAGACATAGCCACTCAGTTAGTGCTGTGCTCAGAAGACGACCAACTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS CCA 72 bp ACCTGCTCAGGCACCTTGTCAGCCTGCCTCATGTGCTaGGCTTCCCAGCTCCTACCCATCACAGAGCACAAA +
Preference number: 6 (lower is better)
Translates to: TCSGTLSACLMC*ASQLLPITEHK
Trigger: TTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAGGTGCCTGAGCAGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS CCA 72 bp GCTCATCAAAGAAGGCTGAGGACTCAGAGGCTTCCTTaGCAGTGTGTTTGGAGGCCTGGGCGCAAGGGCTGT +
Preference number: 6 (lower is better)
Translates to: AHQRRLRTQRLP*QCVWRPGRKGC
Trigger: ACAGCCCTTGCGCCCAGGCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCCTTCTTTGATGAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS CCA 72 bp TGGAGCCCCCTTCTGTATGACGATGTCTCTTTGGAGTaGAGGGCAGCTCCTACAGCAACTCGGGGGAAAGGG +
Preference number: 6 (lower is better)
Translates to: WSPLLYDDVSLE*RAAPTATRGKG
Trigger: CCCTTTCCCCCGAGTTGCTGTAGGAGCTGCCCTCCACTCCAAAGAGACATCGTCATACAGAAGGGGGCTCCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS CCA 72 bp AGGCCATGCGCCACAGAATCCAGCTGGGTTTACAGCTaGAACACTTTGTCCTCCGGACAGCTGTGGCGGAGA +
Preference number: 6 (lower is better)
Translates to: RPCATESSWVYS*NTLSSGQLWRR
Trigger: TCTCCGCCACAGCTGTCCGGAGGACAAAGTGTTCCAGCTGTAAACCCAGCTGGATTCTGTGGCGCATGGCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS TCA 72 bp TTCAAGGGTGACGAAGCGAAGCGCAGGTCCCACAACTaGATCACCGGGAGTTGGTCGTCTTCTGAGCACAGC +
Preference number: 6 (lower is better)
Translates to: FKGDEAKRRSHN*ITGSWSSSEHS
Trigger: GCTGTGCTCAGAAGACGACCAACTCCCGGTGATTCAGTTGTGGGACCTGCGCTTCGCTTCGTCACCCTTGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS CCA 72 bp ACTGATGAAGACAGGGCGGGAACAAGCCTGTGCCACTaGCTGGACAGGGATGCTGGGAAGGCCAAAAGTAAC +
Preference number: 6 (lower is better)
Translates to: TDEDRAGTSLCH*LDRDAGKAKSN
Trigger: GTTACTTTTGGCCTTCCCAGCATCCCTGTCCAGCCAGTGGCACAGGCTTGTTCCCGCCCTGTCTTCATCAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS CAA 90 bp TCATCAAAGAAGGCTGAGGACTCAGAGGCTTCCTTGGCAGTGTGTTaGGAGGCCTGGGCGCAAGGGCTGTGTGCTCTGTCACTTTTGAGG +
Preference number: 6 (lower is better)
Translates to: SSKKAEDSEASLAVC*EAWAQGLCALSLLR
Trigger: CCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAGGCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCCTTCTTTGATGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS CCA 72 bp GGCACCACTGAACATCAAAGCACCAGCTGCTCTGTGTaGGCAGCTTGTAGACCACCTCACTGCTTGACAGGT +
Preference number: 6 (lower is better)
Translates to: GTTEHQSTSCSV*AACRPPHCLTG
Trigger: ACCTGTCAAGCAGTGAGGTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS TCA 72 bp ACTGACCGAGTCAGGACTTCTGACTCTGTGATGACTTaGCTGATGAAGACAGGGCGGGAACAAGCCTGTGCC +
Preference number: 6 (lower is better)
Translates to: TDRVRTSDSVMT*LMKTGREQACA
Trigger: GGCACAGGCTTGTTCCCGCCCTGTCTTCATCAGTCAAGTCATCACAGAGTCAGAAGTCCTGACTCGGTCAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS GCA 72 bp GGCCTGGAATCCTGCTCTAAGGTCACCTTCAGGAACTaGCAGAGTATCTTCTCGCATGGCAGTGATGCTTGC +
Preference number: 6 (lower is better)
Translates to: GLESCSKVTFRN*QSIFSHGSDAC
Trigger: GCAAGCATCACTGCCATGCGAGAAGATACTCTGGCAGTTCCTGAAGGTGACCTTAGAGCAGGATTCCAGGCC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS GCA 72 bp CTCAGGGCCAAGGCTCCTAAGCGGAGCTGTAATTGGTaGTGGAGGCATGAATGTCTCAGGCAGCTTTTTCCT +
Preference number: 6 (lower is better)
Translates to: LRAKAPKRSCNW*WRHECLRQLFP
Trigger: AGGAAAAAGCTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS CCA 72 bp TTCCAGGCCAGGCCCGAGCAGTTCATCCTGCTGCTGTaGCTGCTGACTTTAATGATGGGCTCATTCTTTCTG +
Preference number: 6 (lower is better)
Translates to: FQARPEQFILLL*LLTLMMGSFFL
Trigger: CAGAAAGAATGAGCCCATCATTAAAGTCAGCAGCCACAGCAGCAGGATGAACTGCTCGGGCCTGGCCTGGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS CCA 72 bp CTCTGCTGTAACCTAACAGCCCAAGGAACTTCGGCCTaGAATCCTGCTCTAAGGTCACCTTCAGGAACTGCC +
Preference number: 6 (lower is better)
Translates to: LCCNLTAQGTSA*NPALRSPSGTA
Trigger: GGCAGTTCCTGAAGGTGACCTTAGAGCAGGATTCCAGGCCGAAGTTCCTTGGGCTGTTAGGTTACAGCAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS CAA 72 bp AGGGGCTCCTTCCCTGAAGAAAGGACGTGGGTCACATaGTATAGAGTCAGTGTGCCGTTGTCTCCTCCACCA +
Preference number: 6 (lower is better)
Translates to: RGSFPEERTWVT*YRVSVPLSPPP
Trigger: TGGTGGAGGAGACAACGGCACACTGACTCTATACAATGTGACCCACGTCCTTTCTTCAGGGAAGGAGCCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS CAA 90 bp TGGGCAATCAGGGGCTCCTTCCCTGAAGAAAGGACGTGGGTCACATaGTATAGAGTCAGTGTGCCGTTGTCTCCTCCACCAGCAATAACC +
Preference number: 6 (lower is better)
Translates to: WAIRGSFPEERTWVT*YRVSVPLSPPPAIT
Trigger: GGTTATTGCTGGTGGAGGAGACAACGGCACACTGACTCTATACAATGTGACCCACGTCCTTTCTTCAGGGAAGGAGCCCCTGATTGCCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS GCA 72 bp TCAGGCAAGTGTCCACCTTCTTCTGAAGTTCCTCTCTaGTGTAACCTAACAGCCCAAGGAACTTCGGCCTGG +
Preference number: 6 (lower is better)
Translates to: SGKCPPSSEVPL*CNLTAQGTSAW
Trigger: CCAGGCCGAAGTTCCTTGGGCTGTTAGGTTACAGCAGAGAGGAACTTCAGAAGAAGGTGGACACTTGCCTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS CCA 72 bp TGGGCAATCAGGGGCTCCTTCCCTGAAGAAAGGACGTaGGTCACATTGTATAGAGTCAGTGTGCCGTTGTCT +
Preference number: 6 (lower is better)
Translates to: WAIRGSFPEERT*VTLYRVSVPLS
Trigger: AGACAACGGCACACTGACTCTATACAATGTGACCCACGTCCTTTCTTCAGGGAAGGAGCCCCTGATTGCCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS CCA 72 bp GCTGGAGGCATGAATGTCTCAGGCAGCTTTTTCCTTTaGAGGTTTCCCTGGGAGGCTGGAGAAACTTTCCAG +
Preference number: 6 (lower is better)
Translates to: AGGMNVSGSFFL*RFPWEAGETFQ
Trigger: CTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAGCTGCCTGAGACATTCATGCCTCCAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS CCA 72 bp AGGGCCAAGGCTCCTAAGCGGAGCTGTAATTGGTGCTaGAGGCATGAATGTCTCAGGCAGCTTTTTCCTTTG +
Preference number: 6 (lower is better)
Translates to: RAKAPKRSCNWC*RHECLRQLFPL
Trigger: CAAAGGAAAAAGCTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS CAA 72 bp AGGACGTGGGTCACATTGTATAGAGTCAGTGTGCCGTaGTCTCCTCCACCAGCAATAACCCCGGAGTTTTCC +
Preference number: 6 (lower is better)
Translates to: RTWVTLYRVSVP*SPPPAITPEFS
Trigger: GGAAAACTCCGGGGTTATTGCTGGTGGAGGAGACAACGGCACACTGACTCTATACAATGTGACCCACGTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS CAA 72 bp TGCTCTGTGTGGGCAGCTTGTAGACCACCTCACTGCTaGACAGGTTCCAGCAAAAGATCTGGCTGTCTTTGG +
Preference number: 6 (lower is better)
Translates to: CSVWAACRPPHC*TGSSKRSGCLW
Trigger: CCAAAGACAGCCAGATCTTTTGCTGGAACCTGTCAAGCAGTGAGGTGGTCTACAAGCTGCCCACACAGAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS CAA 90 bp CCTGAAGAAAGGACGTGGGTCACATTGTATAGAGTCAGTGTGCCGTaGTCTCCTCCACCAGCAATAACCCCGGAGTTTTCCAGAAGCCCA +
Preference number: 6 (lower is better)
Translates to: PEERTWVTLYRVSVP*SPPPAITPEFSRSP
Trigger: TGGGCTTCTGGAAAACTCCGGGGTTATTGCTGGTGGAGGAGACAACGGCACACTGACTCTATACAATGTGACCCACGTCCTTTCTTCAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS CAA 72 bp GGTCAACCGCCTCAAGCTGAGGGCTTTCCTGTGATTTaGAGTCACTCTTCAGGCAAGTGTCCACCTTCTTCT +
Preference number: 6 (lower is better)
Translates to: GQPPQAEGFPVI*SHSSGKCPPSS
Trigger: AGAAGAAGGTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS TCA 72 bp CAAATCCCAAATGAAGATCTCAGAGTCACTGGCTCCTaGGGCCAGGAGATTGCCCTGGAAAGGATTAAAGTC +
Preference number: 6 (lower is better)
Translates to: QIPNEDLRVTGS*GQEIALERIKV
Trigger: GACTTTAATCCTTTCCAGGGCAATCTCCTGGCCTCAGGAGCCAGTGACTCTGAGATCTTCATTTGGGATTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS TCA 72 bp AGTCATGTTCTGAGGTATCAGCTCATCAAAGAAGGCTaGGGACTCAGAGGCTTCCTTGGCAGTGTGTTTGGA +
Preference number: 6 (lower is better)
Translates to: SHVLRYQLIKEG*GLRGFLGSVFG
Trigger: TCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCCTTCTTTGATGAGCTGATACCTCAGAACATGACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS CCA 72 bp TGTGACTTGGGTCCAGGTGTCATTGGGACACTCAGGTaGTTCAAATCCCAAATGAAGATCTCAGAGTCACTG +
Preference number: 6 (lower is better)
Translates to: CDLGPGVIGTLR*FKSQMKISESL
Trigger: CAGTGACTCTGAGATCTTCATTTGGGATTTGAACCACCTGAGTGTCCCAATGACACCTGGACCCAAGTCACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS TCA 72 bp AGAAGCCCACTGCCAAAGCTTCCCCATATTAGCTTGTaGAACCTGCTGGAGACAGAAAGAATTCCTTTGTGT +
Preference number: 6 (lower is better)
Translates to: RSPLPKLPHISL*NLLETERIPLC
Trigger: ACACAAAGGAATTCTTTCTGTCTCCAGCAGGTTTCACAAGCTAATATGGGGAAGCTTTGGCAGTGGGCTTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14
CDS TCA 72 bp CTTCAGGAACTGCCAGAGTATCTTCTCGCATGGCAGTaGTGCTTGCTGAACCTTGCTCTGACAATAATTAAG +
Preference number: 6 (lower is better)
Translates to: LQELPEYLLAWQ*CLLNLALTIIK
Trigger: CTTAATTATTGTCAGAGCAAGGTTCAGCAAGCATCACTGCCATGCGAGAAGATACTCTGGCAGTTCCTGAAG
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063632.14
ENSMUST00000111985.2
CDS TCA 72 bp GAATTCCTTTGTGTTTCAAGTCCAGAGAAGGGTCCCTaGAATCAATCTCAAATATTTCCAGGGTGGCATTTG +
Preference number: 6 (lower is better)
Translates to: EFLCVSSPEKGP*NQSQIFPGWHL
Trigger: CAAATGCCACCCTGGAAATATTTGAGATTGATTTCAGGGACCCTTCTCTGGACTTGAAACACAAAGGAATTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063632.14