Pregenerated sensors for SEC22B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027879Ensembl transcript IDs: ENSMUST00000029476.9, ENSMUST00000122288.2, ENSMUST00000130620.2, ENSMUST00000130778.2
Found 54 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GAAGAGGAAGGTGGATCTTTGTCATTTCAAGGCCAGCCTGGTTCATaGGTTCCAGGACAACTGAGGCTAGAGAGACCCTGTCTCAACAAA | + |
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Preference number: 1 (lower is better) Translates to: EEEGGSLSFQGQPGS*VPGQLRLERPCLNK Trigger: TTTGTTGAGACAGGGTCTCTCTAGCCTCAGTTGTCCTGGAACTCATGAACCAGGCTGGCCTTGAAATGACAAAGATCCACCTTCCTCTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029476.9 |
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| 3UTR CCA 90 bp | AGTAAACGAAGAGGAAGGTGGATCTTTGTCATTTCAAGGCCAGCCTaGTTCATGAGTTCCAGGACAACTGAGGCTAGAGAGACCCTGTCT | + |
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Preference number: 1 (lower is better) Translates to: SKRRGRWIFVISRPA*FMSSRTTEARETLS Trigger: AGACAGGGTCTCTCTAGCCTCAGTTGTCCTGGAACTCATGAACCAGGCTGGCCTTGAAATGACAAAGATCCACCTTCCTCTTCGTTTACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029476.9 |
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| 3UTR GCA 90 bp | GTGAGCTGCCACCCTCCATTCTTAGGTAAGCACCAAGCACTATGGTaGGACTACTTAGGGTTTTCAGTCTTCCAAAGGTTTTTATTGCCA | + |
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Preference number: 1 (lower is better) Translates to: VSCHPPFLGKHQALW*DYLGFSVFQRFLLP Trigger: TGGCAATAAAAACCTTTGGAAGACTGAAAACCCTAAGTAGTCGCACCATAGTGCTTGGTGCTTACCTAAGAATGGAGGGTGGCAGCTCAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029476.9 |
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| 3UTR CCA 90 bp | ACAGTGAGCTGCCACCCTCCATTCTTAGGTAAGCACCAAGCACTATaGTGCGACTACTTAGGGTTTTCAGTCTTCCAAAGGTTTTTATTG | + |
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Preference number: 1 (lower is better) Translates to: TVSCHPPFLGKHQAL*CDYLGFSVFQRFLL Trigger: CAATAAAAACCTTTGGAAGACTGAAAACCCTAAGTAGTCGCACCATAGTGCTTGGTGCTTACCTAAGAATGGAGGGTGGCAGCTCACTGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029476.9 |
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| 3UTR TCA 90 bp | GTGAGTCATTTATATCTAAAACATTCTTGCAGAATTTACATAAGCTaGAACAGAAATGAGGGACTGGCTCTCAGAGGTGTCCTTCATAAG | + |
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Preference number: 1 (lower is better) Translates to: VSHLYLKHSCRIYIS*NRNEGLALRGVLHK Trigger: CTTATGAAGGACACCTCTGAGAGCCAGTCCCTCATTTCTGTTTCAGCTTATGTAAATTCTGCAAGAATGTTTTAGATATAAATGACTCAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029476.9 |
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| 3UTR-3UTR TCA 90 bp | AAAACAAAGGCCCGGCTGAGATACCGTGCCTGGAAACCTGTGAGAATGACATGTAGCCCCACTAGAGTCTaGCAAACTGATCTCTGCCAT | + |
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Preference number: 2 (lower is better) Translates to: KTKARLRYRAWKPVRMTCSPTRV*QTDLCH Trigger: ATGGCAGAGATCAGTTTGTCAGACTCTAGTGGGGCT...ACATGTCATTCTCACAGGTTTCCAGGCACGGTATCTCAGCCGGGCCTTTGTTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000122288.2 |
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| 3UTR-3UTR GCA 90 bp | GGGACAGCTAGCATGAAGCACATCCTTGGCAACCGCCTCTCAATCTTCTTTGTATTACACCAGGAGCTTTaGTGTGTAACTAATCCCTCG | + |
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Preference number: 2 (lower is better) Translates to: GTASMKHILGNRLSIFFVLHQEL*CVTNPS Trigger: CGAGGGATTAGTTACACAGCAAAGCTCCTGGTGTAA...TACAAAGAAGATTGAGAGGCGGTTGCCAAGGATGTGCTTCATGCTAGCTGTCCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000122288.2 |
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| 3UTR-3UTR TCA 90 bp | TCACATACTGTGTCTCACTTGAAAGTCAATCACACTGCTACCAACACAGGAATGGAGGGCCGCCTTCTTTaGCAGAATTTCAGGATGCTG | + |
|
Preference number: 2 (lower is better) Translates to: SHTVSHLKVNHTATNTGMEGRLL*QNFRML Trigger: CAGCATCCTGAAATTCTGTCAAAGAAGGCGGCCCTC...CATTCCTGTGTTGGTAGCAGTGTGATTGACTTTCAAGTGAGACACAGTATGTGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029476.9 ENSMUST00000130778.2 |
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| 3UTR-3UTR TCA 90 bp | TACCAGGCTTCTCATAAGGAAGTGAGACTGTTGTCCTCCGCCAGGAATAGGGCAATACTGTGTCTCACTTaGAAGTCAATCACACTGCTA | + |
|
Preference number: 2 (lower is better) Translates to: YQASHKEVRLLSSARNRAILCLT*KSITLL Trigger: TAGCAGTGTGATTGACTTTCAAGTGAGACACAGTAT...TGCCCTATTCCTGGCGGAGGACAACAGTCTCACTTCCTTATGAGAAGCCTGGTA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029476.9 |
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| 3UTR-3UTR TCA 90 bp | CCCATTATCCCTGAGCAAAAAGGGGAAAGAAGACTGATGTACTCCCATTGCTTACAAGAATTATGGGAATaGGTGGGTAGGGAAGTGGGG | + |
|
Preference number: 2 (lower is better) Translates to: PIIPEQKGERRLMYSHCLQELWE*VGREVG Trigger: CCCCACTTCCCTACCCACTCATTCCCATAATTCTTG...TAAGCAATGGGAGTACATCAGTCTTCTTTCCCCTTTTTGCTCAGGGATAATGGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029476.9 |
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| 3UTR-3UTR GCA 90 bp | TCACATACTGTGTCTCACTTGAAAGTCAATCACACTGCTACCAACACAGGAATGATGCCCCAGTTCTGCTaGCTCACACATGTACTGGGA | + |
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Preference number: 2 (lower is better) Translates to: SHTVSHLKVNHTATNTGMMPQFC*LTHVLG Trigger: TCCCAGTACATGTGTGAGGCAGCAGAACTGGGGCAT...CATTCCTGTGTTGGTAGCAGTGTGATTGACTTTCAAGTGAGACACAGTATGTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029476.9 ENSMUST00000130778.2 |
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| 3UTR-3UTR CCA 90 bp | GCAGTGTGCGCAGGACTTATAGGTTATATTATAGCCCCTTGTGATAATACTCAAAGGGGCAGGCAGAGTTaGAGCTTTAAGCTGGGCCTT | + |
|
Preference number: 2 (lower is better) Translates to: AVCAGLIGYIIAPCDNTQRGRQS*SFKLGL Trigger: AAGGCCCAGCTTAAAGCTCCAACTCTGCCTGCCCCT...TTGAGTATTATCACAAGGGGCTATAATATAACCTATAAGTCCTGCGCACACTGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029476.9 |
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| 3UTR-3UTR TCA 90 bp | AGAGAAACAAAACAGACAACCTACTGTTCCCTAATACATATAGCTCAGCACCCAGAGGGCCGCCTTCTTTaGCAGAATTTCAGGATGCTG | + |
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Preference number: 2 (lower is better) Translates to: RETKQTTYCSLIHIAQHPEGRLL*QNFRML Trigger: CAGCATCCTGAAATTCTGTCAAAGAAGGCGGCCCTC...TGGGTGCTGAGCTATATGTATTAGGGAACAGTAGGTTGTCTGTTTTGTTTCTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029476.9 ENSMUST00000130778.2 |
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| 3UTR-3UTR TCA 90 bp | TACCAGGCTTCTCATAAGGAAGTGAGACTGTTGTCCTCCGCCAGGAATAGGGCAAGAATTTACATAAGCTaGAACAGAAATGAGGGACTG | + |
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Preference number: 2 (lower is better) Translates to: YQASHKEVRLLSSARNRARIYIS*NRNEGL Trigger: CAGTCCCTCATTTCTGTTTCAGCTTATGTAAATTCT...TGCCCTATTCCTGGCGGAGGACAACAGTCTCACTTCCTTATGAGAAGCCTGGTA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029476.9 |
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| 3UTR-3UTR GCA 90 bp | CCCACTTATAAAATTCTACCTCAGAAGGTGAAAGGAGATATCCCCATTATCCCTATGCCCCAGTTCTGCTaGCTCACACATGTACTGGGA | + |
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Preference number: 2 (lower is better) Translates to: PTYKILPQKVKGDIPIIPMPQFC*LTHVLG Trigger: TCCCAGTACATGTGTGAGGCAGCAGAACTGGGGCAT...AGGGATAATGGGGATATCTCCTTTCACCTTCTGAGGTAGAATTTTATAAGTGGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000029476.9 |
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| 3UTR-3UTR GCA 90 bp | TCACATACTGTGTCTCACTTGAAAGTCAATCACACTGCTACCAACACAGGAATGAGAATGCCCCAGTTCTaGTGCCTCACACATGTACTG | + |
|
Preference number: 2 (lower is better) Translates to: SHTVSHLKVNHTATNTGMRMPQF*CLTHVL Trigger: CAGTACATGTGTGAGGCAGCAGAACTGGGGCATTCT...CATTCCTGTGTTGGTAGCAGTGTGATTGACTTTCAAGTGAGACACAGTATGTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029476.9 ENSMUST00000130778.2 |
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| 3UTR-3UTR GCA 90 bp | CCCACTTATAAAATTCTACCTCAGAAGGTGAAAGGAGATATCCCCATTATCCCTCCATCAGAGAGAGAATaGCCCAGTTCTGCTGCCTCA | + |
|
Preference number: 2 (lower is better) Translates to: PTYKILPQKVKGDIPIIPPSERE*PSSAAS Trigger: TGAGGCAGCAGAACTGGGGCATTCTCTCTCTGATGG...AGGGATAATGGGGATATCTCCTTTCACCTTCTGAGGTAGAATTTTATAAGTGGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029476.9 |
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| 3UTR-3UTR CCA 90 bp | ACAAAGGCCCGGCTGAGATACCGTGCCTGGAAACCTGTGAGAATGACATGTAGTAGTGTTCACTGGGCTTaGTTTTGTAAGTTCTTAGAA | + |
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Preference number: 2 (lower is better) Translates to: TKARLRYRAWKPVRMTCSSVHWA*FCKFLE Trigger: TTCTAAGAACTTACAAAACCAAGCCCAGTGAACACT...ACTACATGTCATTCTCACAGGTTTCCAGGCACGGTATCTCAGCCGGGCCTTTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000122288.2 |
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| 3UTR-3UTR GCA 90 bp | AGAGAAACAAAACAGACAACCTACTGTTCCCTAATACATATAGCTCAGCACCCAAGAATGCCCCAGTTCTaGTGCCTCACACATGTACTG | + |
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Preference number: 2 (lower is better) Translates to: RETKQTTYCSLIHIAQHPRMPQF*CLTHVL Trigger: CAGTACATGTGTGAGGCAGCAGAACTGGGGCATTCT...TGGGTGCTGAGCTATATGTATTAGGGAACAGTAGGTTGTCTGTTTTGTTTCTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029476.9 ENSMUST00000130778.2 |
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| 3UTR-3UTR CCA 90 bp | TCACATACTGTGTCTCACTTGAAAGTCAATCACACTGCTACCAACACAGGAATGGCCTCACACATGTACTaGGAGGGAGAGAAACAAAAC | + |
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Preference number: 2 (lower is better) Translates to: SHTVSHLKVNHTATNTGMASHMY*EGEKQN Trigger: GTTTTGTTTCTCTCCCTCCCAGTACATGTGTGAGGC...CATTCCTGTGTTGGTAGCAGTGTGATTGACTTTCAAGTGAGACACAGTATGTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029476.9 ENSMUST00000130778.2 |
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| 3UTR-3UTR CCA 90 bp | TCACATACTGTGTCTCACTTGAAAGTCAATCACACTGCTACCAACACAGGAATGATTTCAAGGCCAGCCTaGTTCATGAGTTCCAGGACA | + |
|
Preference number: 2 (lower is better) Translates to: SHTVSHLKVNHTATNTGMISRPA*FMSSRT Trigger: TGTCCTGGAACTCATGAACCAGGCTGGCCTTGAAAT...CATTCCTGTGTTGGTAGCAGTGTGATTGACTTTCAAGTGAGACACAGTATGTGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029476.9 |
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| 3UTR-3UTR CCA 90 bp | AGAGAAACAAAACAGACAACCTACTGTTCCCTAATACATATAGCTCAGCACCCACAAGCTTGGCGTAAGTaGAGCGCATGTTCAGGTACT | + |
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Preference number: 2 (lower is better) Translates to: RETKQTTYCSLIHIAQHPQAWRK*SACSGT Trigger: AGTACCTGAACATGCGCTCCACTTACGCCAAGCTTG...TGGGTGCTGAGCTATATGTATTAGGGAACAGTAGGTTGTCTGTTTTGTTTCTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130778.2 |
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| 3UTR-3UTR GCA 90 bp | AGAGAAACAAAACAGACAACCTACTGTTCCCTAATACATATAGCTCAGCACCCAGAAAAACACAGCTACTaGTGCAAGCTTGGCGTAAGT | + |
|
Preference number: 2 (lower is better) Translates to: RETKQTTYCSLIHIAQHPEKHSY*CKLGVS Trigger: ACTTACGCCAAGCTTGCAGCAGTAGCTGTGTTTTTC...TGGGTGCTGAGCTATATGTATTAGGGAACAGTAGGTTGTCTGTTTTGTTTCTCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000130778.2 |
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| 3UTR CAA 90 bp | CACATAGGATCTGTGCATCATGAACCTTCACATACTGTGTCTCACTaGAAAGTCAATCACACTGCTACCAACACAGGAATGTCGATTAAA | + |
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Preference number: 2 (lower is better) Translates to: HIGSVHHEPSHTVSH*KVNHTATNTGMSIK Trigger: TTTAATCGACATTCCTGTGTTGGTAGCAGTGTGATTGACTTTCAAGTGAGACACAGTATGTGAAGGTTCATGATGCACAGATCCTATGTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029476.9 ENSMUST00000130778.2 |
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| 3UTR-3UTR CCA 90 bp | AACATTTATTCTAGTTCTGAACTTACTAGGAATACAATAAGCATCCCTACCAGGACAGAAATGAGGGACTaGCTCTCAGAGGTGTCCTTC | + |
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Preference number: 2 (lower is better) Translates to: NIYSSSELTRNTISIPTRTEMRD*LSEVSF Trigger: GAAGGACACCTCTGAGAGCCAGTCCCTCATTTCTGT...CCTGGTAGGGATGCTTATTGTATTCCTAGTAAGTTCAGAACTAGAATAAATGTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029476.9 |
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| 3UTR-3UTR CCA 90 bp | GAAGCACATCCTTGGCAACCGCCTCTCAATCTTCTTTGTAATTTCTGTAACTTGATGTTCAGTGTTCACTaGGCTTGGTTTTGTAAGTTC | + |
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Preference number: 2 (lower is better) Translates to: EAHPWQPPLNLLCNFCNLMFSVH*AWFCKF Trigger: GAACTTACAAAACCAAGCCCAGTGAACACTGAACAT...CAAGTTACAGAAATTACAAAGAAGATTGAGAGGCGGTTGCCAAGGATGTGCTTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000122288.2 |
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| 3UTR-3UTR TCA 90 bp | AGAGAAACAAAACAGACAACCTACTGTTCCCTAATACATATAGCTCAGCACCCAATACTGTGTCTCACTTaGAAGTCAATCACACTGCTA | + |
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Preference number: 2 (lower is better) Translates to: RETKQTTYCSLIHIAQHPILCLT*KSITLL Trigger: TAGCAGTGTGATTGACTTTCAAGTGAGACACAGTAT...TGGGTGCTGAGCTATATGTATTAGGGAACAGTAGGTTGTCTGTTTTGTTTCTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029476.9 ENSMUST00000130778.2 |
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| 3UTR-3UTR CCA 90 bp | TCACATACTGTGTCTCACTTGAAAGTCAATCACACTGCTACCAACACAGGAATGGTTAACTTCTTACAATaGCCAACACATAGGATCTGT | + |
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Preference number: 2 (lower is better) Translates to: SHTVSHLKVNHTATNTGMVNFLQ*PTHRIC Trigger: ACAGATCCTATGTGTTGGCCATTGTAAGAAGTTAAC...CATTCCTGTGTTGGTAGCAGTGTGATTGACTTTCAAGTGAGACACAGTATGTGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029476.9 ENSMUST00000130778.2 |
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| 3UTR-3UTR CCA 90 bp | AACATTTATTCTAGTTCTGAACTTACTAGGAATACAATAAGCATCCCTACCAGGAAACGAAGAGGAAGGTaGATCTTTGTCATTTCAAGG | + |
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Preference number: 2 (lower is better) Translates to: NIYSSSELTRNTISIPTRKRRGR*IFVISR Trigger: CCTTGAAATGACAAAGATCCACCTTCCTCTTCGTTT...CCTGGTAGGGATGCTTATTGTATTCCTAGTAAGTTCAGAACTAGAATAAATGTT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029476.9 |
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| 3UTR-3UTR CCA 90 bp | AACATTTATTCTAGTTCTGAACTTACTAGGAATACAATAAGCATCCCTACCAGGGTTAACTTCTTACAATaGCCAACACATAGGATCTGT | + |
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Preference number: 2 (lower is better) Translates to: NIYSSSELTRNTISIPTRVNFLQ*PTHRIC Trigger: ACAGATCCTATGTGTTGGCCATTGTAAGAAGTTAAC...CCTGGTAGGGATGCTTATTGTATTCCTAGTAAGTTCAGAACTAGAATAAATGTT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029476.9 |
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| 3UTR-3UTR CAA 90 bp | GAGAAAACAAAGGCCCGGCTGAGATACCGTGCCTGGAAACCTGTGAGAATGACACTCGTCAGCGATTTCTaGAGAGCCCCACTAGAGTCT | + |
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Preference number: 3 (lower is better) Translates to: EKTKARLRYRAWKPVRMTLVSDF*RAPLES Trigger: AGACTCTAGTGGGGCTCTCAAGAAATCGCTGACGAG...TGTCATTCTCACAGGTTTCCAGGCACGGTATCTCAGCCGGGCCTTTGTTTTCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000122288.2 |
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| 3UTR TCA 72 bp | GGTGGATCTTTGTCATTTCAAGGCCAGCCTGGTTCATaGGTTCCAGGACAACTGAGGCTAGAGAGACCCTGT | + |
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Preference number: 3 (lower is better) Translates to: GGSLSFQGQPGS*VPGQLRLERPC Trigger: ACAGGGTCTCTCTAGCCTCAGTTGTCCTGGAACTCATGAACCAGGCTGGCCTTGAAATGACAAAGATCCACC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029476.9 |
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| 3UTR CCA 72 bp | AGAGGAAGGTGGATCTTTGTCATTTCAAGGCCAGCCTaGTTCATGAGTTCCAGGACAACTGAGGCTAGAGAG | + |
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Preference number: 3 (lower is better) Translates to: RGRWIFVISRPA*FMSSRTTEARE Trigger: CTCTCTAGCCTCAGTTGTCCTGGAACTCATGAACCAGGCTGGCCTTGAAATGACAAAGATCCACCTTCCTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029476.9 |
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| 3UTR-3UTR CAA 90 bp | TCACATACTGTGTCTCACTTGAAAGTCAATCACACTGCTACCAACACAGGAATGAGAGGGCCGCCTTCTTaGACAGAATTTCAGGATGCT | + |
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Preference number: 3 (lower is better) Translates to: SHTVSHLKVNHTATNTGMRGPPS*TEFQDA Trigger: AGCATCCTGAAATTCTGTCAAAGAAGGCGGCCCTCT...CATTCCTGTGTTGGTAGCAGTGTGATTGACTTTCAAGTGAGACACAGTATGTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029476.9 ENSMUST00000130778.2 |
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| 3UTR-3UTR CAA 90 bp | TCACATACTGTGTCTCACTTGAAAGTCAATCACACTGCTACCAACACAGGAATGGAGGAAGGTGGATCTTaGTCATTTCAAGGCCAGCCT | + |
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Preference number: 3 (lower is better) Translates to: SHTVSHLKVNHTATNTGMEEGGS*SFQGQP Trigger: AGGCTGGCCTTGAAATGACAAAGATCCACCTTCCTC...CATTCCTGTGTTGGTAGCAGTGTGATTGACTTTCAAGTGAGACACAGTATGTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029476.9 |
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| 3UTR-3UTR CAA 90 bp | CCCATTATCCCTGAGCAAAAAGGGGAAAGAAGACTGATGTACTCCCATTGCTTACATACTGTGTCTCACTaGAAAGTCAATCACACTGCT | + |
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Preference number: 3 (lower is better) Translates to: PIIPEQKGERRLMYSHCLHTVSH*KVNHTA Trigger: AGCAGTGTGATTGACTTTCAAGTGAGACACAGTATG...TAAGCAATGGGAGTACATCAGTCTTCTTTCCCCTTTTTGCTCAGGGATAATGGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029476.9 |
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| 3UTR TCA 72 bp | CTGTGCATCATGAACCTTCACATACTGTGTCTCACTTaGAAGTCAATCACACTGCTACCAACACAGGAATGT | + |
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Preference number: 3 (lower is better) Translates to: LCIMNLHILCLT*KSITLLPTQEC Trigger: ACATTCCTGTGTTGGTAGCAGTGTGATTGACTTTCAAGTGAGACACAGTATGTGAAGGTTCATGATGCACAG 43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029476.9 ENSMUST00000130778.2 |
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| 3UTR-3UTR CAA 90 bp | AACATTTATTCTAGTTCTGAACTTACTAGGAATACAATAAGCATCCCTACCAGGAGAGGGCCGCCTTCTTaGACAGAATTTCAGGATGCT | + |
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Preference number: 3 (lower is better) Translates to: NIYSSSELTRNTISIPTRRGPPS*TEFQDA Trigger: AGCATCCTGAAATTCTGTCAAAGAAGGCGGCCCTCT...CCTGGTAGGGATGCTTATTGTATTCCTAGTAAGTTCAGAACTAGAATAAATGTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029476.9 |
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| 3UTR-3UTR CAA 90 bp | AGAGAAACAAAACAGACAACCTACTGTTCCCTAATACATATAGCTCAGCACCCACATACTGTGTCTCACTaGAAAGTCAATCACACTGCT | + |
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Preference number: 3 (lower is better) Translates to: RETKQTTYCSLIHIAQHPHTVSH*KVNHTA Trigger: AGCAGTGTGATTGACTTTCAAGTGAGACACAGTATG...TGGGTGCTGAGCTATATGTATTAGGGAACAGTAGGTTGTCTGTTTTGTTTCTCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029476.9 ENSMUST00000130778.2 |
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| 3UTR-3UTR CAA 90 bp | CCCATTATCCCTGAGCAAAAAGGGGAAAGAAGACTGATGTACTCCCATTGCTTAAAAGAAAACCAAGAATaGGGAACGCATAGACAAAGT | + |
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Preference number: 3 (lower is better) Translates to: PIIPEQKGERRLMYSHCLKENQE*GTHRQS Trigger: ACTTTGTCTATGCGTTCCCAATTCTTGGTTTTCTTT...TAAGCAATGGGAGTACATCAGTCTTCTTTCCCCTTTTTGCTCAGGGATAATGGG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000029476.9 |
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| 3UTR TCA 72 bp | TTCTTACAATGGCCAACACATAGGATCTGTGCATCATaGACCTTCACATACTGTGTCTCACTTGAAAGTCAA | + |
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Preference number: 3 (lower is better) Translates to: FLQWPTHRICAS*TFTYCVSLESQ Trigger: TTGACTTTCAAGTGAGACACAGTATGTGAAGGTTCATGATGCACAGATCCTATGTGTTGGCCATTGTAAGAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029476.9 ENSMUST00000130778.2 |
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| 3UTR-3UTR CAA 90 bp | AACATTTATTCTAGTTCTGAACTTACTAGGAATACAATAAGCATCCCTACCAGGAATTTAAAGAGATGTTaGCAGTGTGCGCAGGACTTA | + |
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Preference number: 3 (lower is better) Translates to: NIYSSSELTRNTISIPTRNLKRC*QCAQDL Trigger: TAAGTCCTGCGCACACTGCAAACATCTCTTTAAATT...CCTGGTAGGGATGCTTATTGTATTCCTAGTAAGTTCAGAACTAGAATAAATGTT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029476.9 |
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| 3UTR TCA 72 bp | AGAAGAGTAAGTAAGCCATCTTTCCAGCCCCTACTGTaGTATTCTTACAAGGTATTACATAAATGTAGTACA | + |
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Preference number: 3 (lower is better) Translates to: RRVSKPSFQPLL*YSYKVLHKCST Trigger: TGTACTACATTTATGTAATACCTTGTAAGAATATCACAGTAGGGGCTGGAAAGATGGCTTACTTACTCTTCT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130620.2 |
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| CDS-3UTR GCA 90 bp | GAAAACAAAGGCCCGGCTGAGATACCGTGCCTGGAAACCTGTGAGAATGACATGGACTGCTCGTCCTCCTaGATCGAGGCGGCCAGCGGA | + |
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Preference number: 4 (lower is better) Translates to: ENKGPAEIPCLETCENDMDCSSS*IEAASG Trigger: TCCGCTGGCCGCCTCGATGCAGGAGGACGAGCAGTC...CATGTCATTCTCACAGGTTTCCAGGCACGGTATCTCAGCCGGGCCTTTGTTTTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000122288.2 |
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| CDS-3UTR GCA 90 bp | GAACTGAACCGGAGGTCCGCTACAAGAAGAGTAAGTAAGCCATCTTTCCAGCCCGACTGCTCGTCCTCCTaGATCGAGGCGGCCAGCGGA | + |
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Preference number: 4 (lower is better) Translates to: ELNRRSATRRVSKPSFQPDCSSS*IEAASG Trigger: TCCGCTGGCCGCCTCGATGCAGGAGGACGAGCAGTC...GGGCTGGAAAGATGGCTTACTTACTCTTCTTGTAGCGGACCTCCGGTTCAGTTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130620.2 |
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| CDS-3UTR GCA 90 bp | AGAGAAACAAAACAGACAACCTACTGTTCCCTAATACATATAGCTCAGCACCCAGCCTGCTCGTCCTCCTaGATCGAGGCGGCCAGCGGA | + |
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Preference number: 4 (lower is better) Translates to: RETKQTTYCSLIHIAQHPACSSS*IEAASG Trigger: TCCGCTGGCCGCCTCGATGCAGGAGGACGAGCAGGC...TGGGTGCTGAGCTATATGTATTAGGGAACAGTAGGTTGTCTGTTTTGTTTCTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130778.2 |
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| CDS-3UTR GCA 90 bp | GCAGTGTGCGCAGGACTTATAGGTTATATTATAGCCCCTTGTGATAATACTCAAGACTGCTCGTCCTCCTaGATCGAGGCGGCCAGCGGA | + |
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Preference number: 4 (lower is better) Translates to: AVCAGLIGYIIAPCDNTQDCSSS*IEAASG Trigger: TCCGCTGGCCGCCTCGATGCAGGAGGACGAGCAGTC...TTGAGTATTATCACAAGGGGCTATAATATAACCTATAAGTCCTGCGCACACTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029476.9 |
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| CDS-3UTR TCA 90 bp | AGAGAAACAAAACAGACAACCTACTGTTCCCTAATACATATAGCTCAGCACCCATTGAAGGTCCCGGCCTaGCTGCTCGTCCTCCTGCAT | + |
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Preference number: 4 (lower is better) Translates to: RETKQTTYCSLIHIAQHPLKVPA*LLVLLH Trigger: ATGCAGGAGGACGAGCAGTCAGGCCGGGACCTTCAA...TGGGTGCTGAGCTATATGTATTAGGGAACAGTAGGTTGTCTGTTTTGTTTCTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029476.9 |
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| CDS-3UTR TCA 90 bp | CAAATGTTCAGTGTTCACTGGGCTTGGTTTTGTAAGTTCTTAGAAACAGTCACTTTGAAGGTCCCGGCCTaGCTGCTCGTCCTCCTGCAT | + |
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Preference number: 4 (lower is better) Translates to: QMFSVHWAWFCKFLETVTLKVPA*LLVLLH Trigger: ATGCAGGAGGACGAGCAGTCAGGCCGGGACCTTCAA...AGTGACTGTTTCTAAGAACTTACAAAACCAAGCCCAGTGAACACTGAACATTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000122288.2 |
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| CDS-3UTR TCA 90 bp | GTAAGCCATCTTTCCAGCCCCTACTGTGATATTCTTACAAGGTATTACATAAATTTGAAGGTCCCGGCCTaGCTGCTCGTCCTCCTGCAT | + |
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Preference number: 4 (lower is better) Translates to: VSHLSSPYCDILTRYYINLKVPA*LLVLLH Trigger: ATGCAGGAGGACGAGCAGTCAGGCCGGGACCTTCAA...ATTTATGTAATACCTTGTAAGAATATCACAGTAGGGGCTGGAAAGATGGCTTAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130620.2 |
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| CDS-3UTR CCA 90 bp | GCAGTGTGCGCAGGACTTATAGGTTATATTATAGCCCCTTGTGATAATACTCAACAAGCTTGGCGTAAGTaGAGCGCATGTTCAGGTACT | + |
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Preference number: 4 (lower is better) Translates to: AVCAGLIGYIIAPCDNTQQAWRK*SACSGT Trigger: AGTACCTGAACATGCGCTCCACTTACGCCAAGCTTG...TTGAGTATTATCACAAGGGGCTATAATATAACCTATAAGTCCTGCGCACACTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029476.9 |
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| 3UTR CAA 72 bp | TCTGTGCATCATGAACCTTCACATACTGTGTCTCACTaGAAAGTCAATCACACTGCTACCAACACAGGAATG | + |
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Preference number: 4 (lower is better) Translates to: SVHHEPSHTVSH*KVNHTATNTGM Trigger: CATTCCTGTGTTGGTAGCAGTGTGATTGACTTTCAAGTGAGACACAGTATGTGAAGGTTCATGATGCACAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029476.9 ENSMUST00000130778.2 |
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| CDS-3UTR GCA 90 bp | CCCACTTATAAAATTCTACCTCAGAAGGTGAAAGGAGATATCCCCATTATCCCTGAAAAACACAGCTACTaGTGCAAGCTTGGCGTAAGT | + |
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Preference number: 4 (lower is better) Translates to: PTYKILPQKVKGDIPIIPEKHSY*CKLGVS Trigger: ACTTACGCCAAGCTTGCAGCAGTAGCTGTGTTTTTC...AGGGATAATGGGGATATCTCCTTTCACCTTCTGAGGTAGAATTTTATAAGTGGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000029476.9 |
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| CDS GCA 72 bp | CTGATACTGTTGAAGGTCCCGGCCTGCTCGTCCTCCTaGATCGAGGCGGCCAGCGGAAGGCCGTCCGCCACA | + |
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Preference number: 6 (lower is better) Translates to: LILLKVPACSSS*IEAASGRPSAT Trigger: TGTGGCGGACGGCCTTCCGCTGGCCGCCTCGATGCAGGAGGACGAGCAGGCCGGGACCTTCAACAGTATCAG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130778.2 |
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