Pregenerated sensors for SEC13 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030298Ensembl transcript IDs: ENSMUST00000032440.6
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ACATGGGATCCCAGTAAGGCAGGTGAACACCCAGTGTTGCATGTGTaGGCACTCGGGTGTGGAATCTTGGTAGCACTGGGACTCTTCTTC | + |
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Preference number: 1 (lower is better) Translates to: TWDPSKAGEHPVLHV*ALGCGILVALGLFF Trigger: GAAGAAGAGTCCCAGTGCTACCAAGATTCCACACCCGAGTGCCCACACATGCAACACTGGGTGTTCACCTGCCTTACTGGGATCCCATGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032440.6 |
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| 3UTR CCA 72 bp | CCCAGTAAGGCAGGTGAACACCCAGTGTTGCATGTGTaGGCACTCGGGTGTGGAATCTTGGTAGCACTGGGA | + |
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Preference number: 3 (lower is better) Translates to: PSKAGEHPVLHV*ALGCGILVALG Trigger: TCCCAGTGCTACCAAGATTCCACACCCGAGTGCCCACACATGCAACACTGGGTGTTCACCTGCCTTACTGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032440.6 |
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| CDS-3UTR GCA 90 bp | GATCCCAGTAAGGCAGGTGAACACCCAGTGTTGCATGTGTGGGCACTCGGGTGTTGGGCCCAGGCCACTTaGCATACTGGCCCCTCATGT | + |
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Preference number: 4 (lower is better) Translates to: DPSKAGEHPVLHVWALGCWAQAT*HTGPSC Trigger: ACATGAGGGGCCAGTATGGCAAGTGGCCTGGGCCCA...ACACCCGAGTGCCCACACATGCAACACTGGGTGTTCACCTGCCTTACTGGGATC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032440.6 |
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| CDS-3UTR CCA 90 bp | GTGGGCACTCGGGTGTGGAATCTTGGTAGCACTGGGACTCTTCTTCCCAGTTGTTGTCCCGAGTGCTCATaGGTCTTCTCCCAAGTGCCG | + |
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Preference number: 4 (lower is better) Translates to: VGTRVWNLGSTGTLLPSCCPECS*VFSQVP Trigger: CGGCACTTGGGAGAAGACCCATGAGCACTCGGGACA...ACAACTGGGAAGAAGAGTCCCAGTGCTACCAAGATTCCACACCCGAGTGCCCAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032440.6 |
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| CDS-3UTR CCA 90 bp | CCAGTGTTGCATGTGTGGGCACTCGGGTGTGGAATCTTGGTAGCACTGGGACTCTCCAGGCACAACTGCTaGGGCCCAACTGACAGCATT | + |
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Preference number: 4 (lower is better) Translates to: PVLHVWALGCGILVALGLSRHNC*GPTDSI Trigger: AATGCTGTCAGTTGGGCCCCAGCAGTTGTGCCTGGA...GAGTCCCAGTGCTACCAAGATTCCACACCCGAGTGCCCACACATGCAACACTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032440.6 |
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| CDS-3UTR CCA 90 bp | GTGTTGCATGTGTGGGCACTCGGGTGTGGAATCTTGGTAGCACTGGGACTCTTCAGCTGGCAATGGTGCTaGTGGGCAAGCCAATGGAGG | + |
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Preference number: 4 (lower is better) Translates to: VLHVWALGCGILVALGLFSWQWC*WASQWR Trigger: CCTCCATTGGCTTGCCCACCAGCACCATTGCCAGCT...GAAGAGTCCCAGTGCTACCAAGATTCCACACCCGAGTGCCCACACATGCAACAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032440.6 |
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| CDS-3UTR CCA 90 bp | ATCCCAGTAAGGCAGGTGAACACCCAGTGTTGCATGTGTGGGCACTCGGGTGTGCACTGCTCGTTCTGTTaGCCCTCTGTGATGGAGGCT | + |
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Preference number: 4 (lower is better) Translates to: IPVRQVNTQCCMCGHSGVHCSFC*PSVMEA Trigger: AGCCTCCATCACAGAGGGCCAACAGAACGAGCAGTG...CACACCCGAGTGCCCACACATGCAACACTGGGTGTTCACCTGCCTTACTGGGAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032440.6 |
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| CDS-3UTR GCA 90 bp | CTCGGGTGTGGAATCTTGGTAGCACTGGGACTCTTCTTCCCAGTTGTTTGGAGGAGGAGGCCAGGATATTaGCATACATGGGGTGGGCCC | + |
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Preference number: 4 (lower is better) Translates to: LGCGILVALGLFFPVVWRRRPGY*HTWGGP Trigger: GGGCCCACCCCATGTATGGCAATATCCTGGCCTCCT...CCTCCAAACAACTGGGAAGAAGAGTCCCAGTGCTACCAAGATTCCACACCCGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032440.6 |
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| CDS-3UTR CCA 90 bp | TTGCATGTGTGGGCACTCGGGTGTGGAATCTTGGTAGCACTGGGACTCTTCTTCGGCCACTTGCCATACTaGCCCCTCATGTCCTCTGAG | + |
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Preference number: 4 (lower is better) Translates to: LHVWALGCGILVALGLFFGHLPY*PLMSSE Trigger: CTCAGAGGACATGAGGGGCCAGTATGGCAAGTGGCC...GAAGAAGAGTCCCAGTGCTACCAAGATTCCACACCCGAGTGCCCACACATGCAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032440.6 |
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| CDS-3UTR GCA 90 bp | GGCACTCGGGTGTGGAATCTTGGTAGCACTGGGACTCTTCTTCCCAGTTGTTTGATGTCCTCTGAGGTCTaGGATGAGGATCTGCCCTCC | + |
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Preference number: 4 (lower is better) Translates to: GTRVWNLGSTGTLLPSCLMSSEV*DEDLPS Trigger: GGAGGGCAGATCCTCATCGCAGACCTCAGAGGACAT...CAAACAACTGGGAAGAAGAGTCCCAGTGCTACCAAGATTCCACACCCGAGTGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032440.6 |
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| CDS-3UTR CCA 90 bp | AGTGTTGCATGTGTGGGCACTCGGGTGTGGAATCTTGGTAGCACTGGGACTCTTAGGTCAGCAGTGAGATaGCCCCATCTGAACTCCCAC | + |
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Preference number: 4 (lower is better) Translates to: SVACVGTRVWNLGSTGTLRSAVR*PHLNSH Trigger: GTGGGAGTTCAGATGGGGCCATCTCACTGCTGACCT...AAGAGTCCCAGTGCTACCAAGATTCCACACCCGAGTGCCCACACATGCAACACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032440.6 |
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| 3UTR CAA 72 bp | ACATGGGATCCCAGTAAGGCAGGTGAACACCCAGTGTaGCATGTGTGGGCACTCGGGTGTGGAATCTTGGTA | + |
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Preference number: 4 (lower is better) Translates to: TWDPSKAGEHPV*HVWALGCGILV Trigger: TACCAAGATTCCACACCCGAGTGCCCACACATGCAACACTGGGTGTTCACCTGCCTTACTGGGATCCCATGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032440.6 |
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| CDS-3UTR TCA 90 bp | GGCACTCGGGTGTGGAATCTTGGTAGCACTGGGACTCTTCTTCCCAGTTGTTTGCTTATTGTCTCCACCTaGCACAGCCAGGATGTTGGC | + |
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Preference number: 4 (lower is better) Translates to: GTRVWNLGSTGTLLPSCLLIVST*HSQDVG Trigger: GCCAACATCCTGGCTGTGTCAGGTGGAGACAATAAG...CAAACAACTGGGAAGAAGAGTCCCAGTGCTACCAAGATTCCACACCCGAGTGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032440.6 |
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| CDS-3UTR TCA 90 bp | GTGGGCACTCGGGTGTGGAATCTTGGTAGCACTGGGACTCTTCTTCCCAGTTGTATTGGGTTTCTGCCCTaGTGGTTGGTCTATAAGGCT | + |
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Preference number: 4 (lower is better) Translates to: VGTRVWNLGSTGTLLPSCIGFLP*WLVYKA Trigger: AGCCTTATAGACCAACCATCAGGGCAGAAACCCAAT...ACAACTGGGAAGAAGAGTCCCAGTGCTACCAAGATTCCACACCCGAGTGCCCAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032440.6 |
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| CDS-3UTR CCA 90 bp | CTAAACACATGGGATCCCAGTAAGGCAGGTGAACACCCAGTGTTGCATGTGTGGTTCTGCCCTGATGGTTaGTCTATAAGGCTTCCAGGC | + |
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Preference number: 4 (lower is better) Translates to: LNTWDPSKAGEHPVLHVWFCPDG*SIRLPG Trigger: GCCTGGAAGCCTTATAGACCAACCATCAGGGCAGAA...CCACACATGCAACACTGGGTGTTCACCTGCCTTACTGGGATCCCATGTGTTTAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032440.6 |
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| CDS-3UTR GCA 90 bp | TTTCAGCTGGACGTTAAATTACTAAACACATGGGATCCCAGTAAGGCAGGTGAAATGGACCAGCTCACGTaGCACACAACATCATTGAAC | + |
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Preference number: 4 (lower is better) Translates to: FQLDVKLLNTWDPSKAGEMDQLT*HTTSLN Trigger: GTTCAATGATGTTGTGTGGCACGTGAGCTGGTCCAT...TTCACCTGCCTTACTGGGATCCCATGTGTTTAGTAATTTAACGTCCAGCTGAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032440.6 |
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| CDS-3UTR GCA 90 bp | TTTCAGCTGGACGTTAAATTACTAAACACATGGGATCCCAGTAAGGCAGGTGAAGTAGTAGTCCATCTGTaGATCATGAATCATGTCCTC | + |
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Preference number: 4 (lower is better) Translates to: FQLDVKLLNTWDPSKAGEVVVHL*IMNHVL Trigger: GAGGACATGATTCATGATGCACAGATGGACTACTAC...TTCACCTGCCTTACTGGGATCCCATGTGTTTAGTAATTTAACGTCCAGCTGAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032440.6 |
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| CDS-3UTR CAA 90 bp | AGTGTTGCATGTGTGGGCACTCGGGTGTGGAATCTTGGTAGCACTGGGACTCTTGTGGGCCCAGGCCACTaGCCATACTGGCCCCTCATG | + |
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Preference number: 5 (lower is better) Translates to: SVACVGTRVWNLGSTGTLVGPGH*PYWPLM Trigger: CATGAGGGGCCAGTATGGCAAGTGGCCTGGGCCCAC...AAGAGTCCCAGTGCTACCAAGATTCCACACCCGAGTGCCCACACATGCAACACT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032440.6 |
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| CDS-3UTR CAA 90 bp | TGGGCACTCGGGTGTGGAATCTTGGTAGCACTGGGACTCTTCTTCCCAGTTGTTTCACTGCTCGTTCTGTaGGCCCTCTGTGATGGAGGC | + |
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Preference number: 5 (lower is better) Translates to: WALGCGILVALGLFFPVVSLLVL*ALCDGG Trigger: GCCTCCATCACAGAGGGCCAACAGAACGAGCAGTGA...AACAACTGGGAAGAAGAGTCCCAGTGCTACCAAGATTCCACACCCGAGTGCCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032440.6 |
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| CDS-3UTR CAA 90 bp | AGTGTTGCATGTGTGGGCACTCGGGTGTGGAATCTTGGTAGCACTGGGACTCTTACAGAACCCTGGCCCTaGTTGACGTCACTGATGCAC | + |
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Preference number: 5 (lower is better) Translates to: SVACVGTRVWNLGSTGTLTEPWP*LTSLMH Trigger: GTGCATCAGTGACGTCAACAAGGGCCAGGGTTCTGT...AAGAGTCCCAGTGCTACCAAGATTCCACACCCGAGTGCCCACACATGCAACACT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032440.6 |
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| CDS-3UTR CAA 90 bp | TGTGTGGGCACTCGGGTGTGGAATCTTGGTAGCACTGGGACTCTTCTTCCCAGTTCTTCCCTCCATAGCTaGATGAGGTTGTCACAGCCA | + |
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Preference number: 5 (lower is better) Translates to: CVGTRVWNLGSTGTLLPSSSLHS*MRLSQP Trigger: TGGCTGTGACAACCTCATCAAGCTATGGAGGGAAGA...ACTGGGAAGAAGAGTCCCAGTGCTACCAAGATTCCACACCCGAGTGCCCACACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032440.6 |
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| CDS-3UTR CAA 90 bp | GGGTGTGGAATCTTGGTAGCACTGGGACTCTTCTTCCCAGTTGTTTGGAGGTTGCACAGGGTCACCTTATaGTCTCCACCTGACACAGCC | + |
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Preference number: 5 (lower is better) Translates to: GCGILVALGLFFPVVWRLHRVTL*SPPDTA Trigger: GGCTGTGTCAGGTGGAGACAATAAGGTGACCCTGTG...CAACCTCCAAACAACTGGGAAGAAGAGTCCCAGTGCTACCAAGATTCCACACCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032440.6 |
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| CDS-3UTR CAA 90 bp | AAATTACTAAACACATGGGATCCCAGTAAGGCAGGTGAACACCCAGTGTTGCATCAGGAGGCCAGGATATaGCCATACATGGGGTGGGCC | + |
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Preference number: 5 (lower is better) Translates to: KLLNTWDPSKAGEHPVLHQEARI*PYMGWA Trigger: GGCCCACCCCATGTATGGCAATATCCTGGCCTCCTG...ATGCAACACTGGGTGTTCACCTGCCTTACTGGGATCCCATGTGTTTAGTAATTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032440.6 |
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| CDS-3UTR CAA 90 bp | CTCGGGTGTGGAATCTTGGTAGCACTGGGACTCTTCTTCCCAGTTGTTTGGAGGTGCCACACAACATCATaGAACTTGTGTAGGAGTTTA | + |
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Preference number: 5 (lower is better) Translates to: LGCGILVALGLFFPVVWRCHTTS*NLCRSL Trigger: TAAACTCCTACACAAGTTCAATGATGTTGTGTGGCA...CCTCCAAACAACTGGGAAGAAGAGTCCCAGTGCTACCAAGATTCCACACCCGAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032440.6 |
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| CDS TCA 72 bp | GCTGGGGCCCAACTGACAGCATTACAGCCAATCGTGTaGGCATTGTTAATCTTCTTCACTTCCCACTGGCCT | + |
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Preference number: 6 (lower is better) Translates to: AGAQLTALQPIV*ALLIFFTSHWP Trigger: AGGCCAGTGGGAAGTGAAGAAGATTAACAATGCTCACACGATTGGCTGTAATGCTGTCAGTTGGGCCCCAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032440.6 |
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