Pregenerated sensors for SEC11C (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024516Ensembl transcript IDs: ENSMUST00000025394.14, ENSMUST00000126432.9, ENSMUST00000153193.3, ENSMUST00000236847.2
Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | ATATTAGCTTTTCTCTTTTTCAACAGAACTCATTTCGGTCTGGTCCCAGGAACTGAACTCATTTCGGTCTaGTCCCAGGAACTGCTTCTC | + |
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Preference number: 2 (lower is better) Translates to: ILAFLFFNRTHFGLVPGTELISV*SQELLL Trigger: GAGAAGCAGTTCCTGGGACCAGACCGAAATGAGTTC...AGTTCCTGGGACCAGACCGAAATGAGTTCTGTTGAAAAAGAGAAAAGCTAATAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000025394.14 ENSMUST00000126432.9 ENSMUST00000153193.3 |
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| 3UTR-3UTR CCA 90 bp | ATATTAGCTTTTCTCTTTTTCAACAGAACTCATTTCGGTCTGGTCCCAGGAACTTTCTCCAGCCAGTTCTaGCCTTCTTTGTACAAGCCT | + |
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Preference number: 2 (lower is better) Translates to: ILAFLFFNRTHFGLVPGTFSSQF*PSLYKP Trigger: AGGCTTGTACAAAGAAGGCCAGAACTGGCTGGAGAA...AGTTCCTGGGACCAGACCGAAATGAGTTCTGTTGAAAAAGAGAAAAGCTAATAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000126432.9 |
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| 3UTR-3UTR CCA 90 bp | ATATTAGCTTTTCTCTTTTTCAACAGAACTCATTTCGGTCTGGTCCCAGGAACTAAAAACATCCCCACCTaGTTTCTCTTTATACAGAAA | + |
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Preference number: 2 (lower is better) Translates to: ILAFLFFNRTHFGLVPGTKNIPT*FLFIQK Trigger: TTTCTGTATAAAGAGAAACCAGGTGGGGATGTTTTT...AGTTCCTGGGACCAGACCGAAATGAGTTCTGTTGAAAAAGAGAAAAGCTAATAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 3 transcripts: ENSMUST00000025394.14 ENSMUST00000126432.9 ENSMUST00000153193.3 |
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| 3UTR-3UTR CCA 90 bp | TATATTAGCTTTTCTCTTTTTCAACAGAACTCATTTCGGTCTGGTCCCAGGAACAAAAACATCCCCACCTaGTTTCTCTTTATACAGAAA | + |
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Preference number: 2 (lower is better) Translates to: YISFSLFQQNSFRSGPRNKNIPT*FLFIQK Trigger: TTTCTGTATAAAGAGAAACCAGGTGGGGATGTTTTT...GTTCCTGGGACCAGACCGAAATGAGTTCTGTTGAAAAAGAGAAAAGCTAATATA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 3 transcripts: ENSMUST00000025394.14 ENSMUST00000126432.9 ENSMUST00000153193.3 |
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| CDS-3UTR GCA 90 bp | CTTTTCTCTTTTTCAACAGAACTCATTTCGGTCTGGTCCCAGGAACTGCTTCTCCTGGACGTGGGGAGATaGGTCCCCACGGCGCCCGCA | + |
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Preference number: 4 (lower is better) Translates to: LFSFSTELISVWSQELLLLDVGR*VPTAPA Trigger: TGCGGGCGCCGTGGGGACGCATCTCCCCACGTCCAG...GAGAAGCAGTTCCTGGGACCAGACCGAAATGAGTTCTGTTGAAAAAGAGAAAAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 3 transcripts: ENSMUST00000025394.14 ENSMUST00000126432.9 ENSMUST00000153193.3 |
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| CDS-3UTR GCA 90 bp | AAATATATTAGCTTTTCTCTTTTTCAACAGAACTCATTTCGGTCTGGTCCCAGGCTGGACGTGGGGAGATaGGTCCCCACGGCGCCCGCA | + |
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Preference number: 4 (lower is better) Translates to: KYISFSLFQQNSFRSGPRLDVGR*VPTAPA Trigger: TGCGGGCGCCGTGGGGACGCATCTCCCCACGTCCAG...CCTGGGACCAGACCGAAATGAGTTCTGTTGAAAAAGAGAAAAGCTAATATATTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 3 transcripts: ENSMUST00000025394.14 ENSMUST00000126432.9 ENSMUST00000153193.3 |
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| CDS-3UTR CCA 90 bp | CTTCTCCAGCCAGTTCTGGCCTTCTTTGTACAAGCCTCTATCATCGACTTCATTAGCAGATCTCCTCTGTaGAAGGCCGGCTCCATACTG | + |
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Preference number: 4 (lower is better) Translates to: LLQPVLAFFVQASIIDFISRSPL*KAGSIL Trigger: CAGTATGGAGCCGGCCTTCCACAGAGGAGATCTGCT...AATGAAGTCGATGATAGAGGCTTGTACAAAGAAGGCCAGAACTGGCTGGAGAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000126432.9 |
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| CDS-3UTR CCA 90 bp | GCTTTTCTCTTTTTCAACAGAACTCATTTCGGTCTGGTCCCAGGAACTGCTTCTAGCAGATCTCCTCTGTaGAAGGCCGGCTCCATACTG | + |
|
Preference number: 4 (lower is better) Translates to: AFLFFNRTHFGLVPGTASSRSPL*KAGSIL Trigger: CAGTATGGAGCCGGCCTTCCACAGAGGAGATCTGCT...AGAAGCAGTTCCTGGGACCAGACCGAAATGAGTTCTGTTGAAAAAGAGAAAAGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000025394.14 ENSMUST00000126432.9 ENSMUST00000153193.3 |
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| CDS-3UTR TCA 90 bp | TTTTTCAACAGAACTCATTTCGGTCTGGTCCCAGGAACTGCTTCTCATGTTAGGGGCCTTTCCAGATCATaGGCGCAGAAGACACGATCA | + |
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Preference number: 4 (lower is better) Translates to: FFNRTHFGLVPGTASHVRGLSRS*AQKTRS Trigger: TGATCGTGTCTTCTGCGCTCATGATCTGGAAAGGCC...CCTAACATGAGAAGCAGTTCCTGGGACCAGACCGAAATGAGTTCTGTTGAAAAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000126432.9 |
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| CDS-3UTR TCA 90 bp | TTTCTCTTTTTCAACAGAACTCATTTCGGTCTGGTCCCAGGAACTGCTTCTCATGGCCTTTCCAGATCATaGGCGCAGAAGACACGATCA | + |
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Preference number: 4 (lower is better) Translates to: FLFFNRTHFGLVPGTASHGLSRS*AQKTRS Trigger: TGATCGTGTCTTCTGCGCTCATGATCTGGAAAGGCC...ATGAGAAGCAGTTCCTGGGACCAGACCGAAATGAGTTCTGTTGAAAAAGAGAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000025394.14 ENSMUST00000126432.9 ENSMUST00000153193.3 |
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| CDS-3UTR TCA 90 bp | ATTAGCTTTTCTCTTTTTCAACAGAACTCATTTCGGTCTGGTCCCAGGAACTGCCTATTTCACCAGCTCTaGTGGGGTCCTCCCGGAAAT | + |
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Preference number: 4 (lower is better) Translates to: ISFSLFQQNSFRSGPRNCLFHQL*WGPPGN Trigger: ATTTCCGGGAGGACCCCATCAGAGCTGGTGAAATAG...GCAGTTCCTGGGACCAGACCGAAATGAGTTCTGTTGAAAAAGAGAAAAGCTAAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000025394.14 ENSMUST00000153193.3 |
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| CDS-3UTR TCA 90 bp | CAGCCAGTTCTGGCCTTCTTTGTACAAGCCTCTATCATCGACTTCATTATTATCCCATTATCTCAGCTCTaGTGGGGTCCTCCCGGAAAT | + |
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Preference number: 4 (lower is better) Translates to: QPVLAFFVQASIIDFIIIPLSQL*WGPPGN Trigger: ATTTCCGGGAGGACCCCATCAGAGCTGAGATAATGG...GATAATAATGAAGTCGATGATAGAGGCTTGTACAAAGAAGGCCAGAACTGGCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000126432.9 |
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| CDS-3UTR TCA 90 bp | ATATTAGCTTTTCTCTTTTTCAACAGAACTCATTTCGGTCTGGTCCCAGGAACTCCTCCCGGAAATTCGTaGGGAACAGCAGATCTCCTC | + |
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Preference number: 4 (lower is better) Translates to: ILAFLFFNRTHFGLVPGTPPGNS*GTADLL Trigger: GAGGAGATCTGCTGTTCCTCACGAATTTCCGGGAGG...AGTTCCTGGGACCAGACCGAAATGAGTTCTGTTGAAAAAGAGAAAAGCTAATAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000025394.14 ENSMUST00000126432.9 ENSMUST00000153193.3 |
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| CDS-3UTR TCA 90 bp | AATATATTAGCTTTTCTCTTTTTCAACAGAACTCATTTCGGTCTGGTCCCAGGACCTCCCGGAAATTCGTaGGGAACAGCAGATCTCCTC | + |
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Preference number: 4 (lower is better) Translates to: NILAFLFFNRTHFGLVPGPPGNS*GTADLL Trigger: GAGGAGATCTGCTGTTCCTCACGAATTTCCGGGAGG...TCCTGGGACCAGACCGAAATGAGTTCTGTTGAAAAAGAGAAAAGCTAATATATT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000025394.14 ENSMUST00000126432.9 ENSMUST00000153193.3 |
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| CDS-3UTR CCA 90 bp | TTTCTCTTTTTCAACAGAACTCATTTCGGTCTGGTCCCAGGAACTGCTTCTCATTTCTCCAGCCAGTTCTaGCCTTCTTTGTACAAGCCT | + |
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Preference number: 4 (lower is better) Translates to: FLFFNRTHFGLVPGTASHFSSQF*PSLYKP Trigger: AGGCTTGTACAAAGAAGGCCAGAACTGGCTGGAGAA...ATGAGAAGCAGTTCCTGGGACCAGACCGAAATGAGTTCTGTTGAAAAAGAGAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025394.14 ENSMUST00000153193.3 |
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| CDS-3UTR TCA 90 bp | AAATATATTAGCTTTTCTCTTTTTCAACAGAACTCATTTCGGTCTGGTCCCAGGCTATTTCACCAGCTCTaGTGGGGTCCTCCCGGAAAT | + |
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Preference number: 4 (lower is better) Translates to: KYISFSLFQQNSFRSGPRLFHQL*WGPPGN Trigger: ATTTCCGGGAGGACCCCATCAGAGCTGGTGAAATAG...CCTGGGACCAGACCGAAATGAGTTCTGTTGAAAAAGAGAAAAGCTAATATATTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000025394.14 ENSMUST00000153193.3 |
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| CDS-3UTR TCA 90 bp | TTCAAATATATTAGCTTTTCTCTTTTTCAACAGAACTCATTTCGGTCTGGTCCCGGCCTTTCCAGATCATaGGCGCAGAAGACACGATCA | + |
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Preference number: 4 (lower is better) Translates to: FKYISFSLFQQNSFRSGPGLSRS*AQKTRS Trigger: TGATCGTGTCTTCTGCGCTCATGATCTGGAAAGGCC...GGGACCAGACCGAAATGAGTTCTGTTGAAAAAGAGAAAAGCTAATATATTTGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000025394.14 ENSMUST00000126432.9 ENSMUST00000153193.3 |
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| CDS-3UTR CCA 90 bp | GCTTTTCTCTTTTTCAACAGAACTCATTTCGGTCTGGTCCCAGGAACTGCTTCTCAGAAGACACGATCATaGCAAAGTTTAAAACCTGGT | + |
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Preference number: 4 (lower is better) Translates to: AFLFFNRTHFGLVPGTASQKTRS*QSLKPG Trigger: ACCAGGTTTTAAACTTTGCCATGATCGTGTCTTCTG...AGAAGCAGTTCCTGGGACCAGACCGAAATGAGTTCTGTTGAAAAAGAGAAAAGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000025394.14 ENSMUST00000126432.9 ENSMUST00000153193.3 |
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| CDS-3UTR TCA 90 bp | TTTCTCTTTTTCAACAGAACTCATTTCGGTCTGGTCCCAGGAACTGCTTCTCATACCTTGATTACTCTGTaGACTATCGGAATGTCTCTT | + |
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Preference number: 4 (lower is better) Translates to: FLFFNRTHFGLVPGTASHTLITL*TIGMSL Trigger: AAGAGACATTCCGATAGTTCACAGAGTAATCAAGGT...ATGAGAAGCAGTTCCTGGGACCAGACCGAAATGAGTTCTGTTGAAAAAGAGAAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025394.14 ENSMUST00000153193.3 |
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| CDS-3UTR CCA 90 bp | ATATTAGCTTTTCTCTTTTTCAACAGAACTCATTTCGGTCTGGTCCCAGGAACTCAGAAGACACGATCATaGCAAAGTTTAAAACCTGGT | + |
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Preference number: 4 (lower is better) Translates to: ILAFLFFNRTHFGLVPGTQKTRS*QSLKPG Trigger: ACCAGGTTTTAAACTTTGCCATGATCGTGTCTTCTG...AGTTCCTGGGACCAGACCGAAATGAGTTCTGTTGAAAAAGAGAAAAGCTAATAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000025394.14 ENSMUST00000126432.9 ENSMUST00000153193.3 |
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| CDS-3UTR CCA 90 bp | TATATTAGCTTTTCTCTTTTTCAACAGAACTCATTTCGGTCTGGTCCCAGGAACCAGAAGACACGATCATaGCAAAGTTTAAAACCTGGT | + |
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Preference number: 4 (lower is better) Translates to: YISFSLFQQNSFRSGPRNQKTRS*QSLKPG Trigger: ACCAGGTTTTAAACTTTGCCATGATCGTGTCTTCTG...GTTCCTGGGACCAGACCGAAATGAGTTCTGTTGAAAAAGAGAAAAGCTAATATA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000025394.14 ENSMUST00000126432.9 ENSMUST00000153193.3 |
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| CDS-3UTR TCA 90 bp | AAATATATTAGCTTTTCTCTTTTTCAACAGAACTCATTTCGGTCTGGTCCCAGGACCTTGATTACTCTGTaGACTATCGGAATGTCTCTT | + |
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Preference number: 4 (lower is better) Translates to: KYISFSLFQQNSFRSGPRTLITL*TIGMSL Trigger: AAGAGACATTCCGATAGTTCACAGAGTAATCAAGGT...CCTGGGACCAGACCGAAATGAGTTCTGTTGAAAAAGAGAAAAGCTAATATATTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000025394.14 ENSMUST00000153193.3 |
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| CDS TCA 90 bp | CCTGGTAGTAGAGCCGATCATACTTTTCCGGGACGATGGAGGAAATaGTGGTGCACTGTCGTTTGTTCATCTTCCTCAGGTCCCCAAAGA | + |
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Preference number: 5 (lower is better) Translates to: PGSRADHTFPGRWRK*WCTVVCSSSSGPQR Trigger: TCTTTGGGGACCTGAGGAAGATGAACAAACGACAGTGCACCATCATTTCCTCCATCGTCCCGGAAAAGTATGATCGGCTCTACTACCAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000153193.3 |
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| CDS-3UTR CAA 90 bp | TTAGCTTTTCTCTTTTTCAACAGAACTCATTTCGGTCTGGTCCCAGGAACTGCTCAGTTCTGGCCTTCTTaGTACAAGCCTCTATCATCG | + |
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Preference number: 5 (lower is better) Translates to: LAFLFFNRTHFGLVPGTAQFWPS*YKPLSS Trigger: CGATGATAGAGGCTTGTACAAAGAAGGCCAGAACTG...AGCAGTTCCTGGGACCAGACCGAAATGAGTTCTGTTGAAAAAGAGAAAAGCTAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000025394.14 ENSMUST00000153193.3 |
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| CDS CCA 72 bp | TCTTCCTCAGGTCCCCAAAGATGTCCAGGCTGGACGTaGGGAGATGCGTCCCCACGGCGCCCGCACGAACCA | + |
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Preference number: 6 (lower is better) Translates to: SSSGPQRCPGWT*GDASPRRPHEP Trigger: TGGTTCGTGCGGGCGCCGTGGGGACGCATCTCCCCACGTCCAGCCTGGACATCTTTGGGGACCTGAGGAAGA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000025394.14 ENSMUST00000126432.9 ENSMUST00000153193.3 ENSMUST00000236847.2 |
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| CDS CAA 72 bp | TCCGGGACGATGGAGGAAATGATGGTGCACTGTCGTTaGTTCATCTTCCTCAGGTCCCCAAAGATGTCCAGG | + |
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Preference number: 6 (lower is better) Translates to: SGTMEEMMVHCR*FIFLRSPKMSR Trigger: CCTGGACATCTTTGGGGACCTGAGGAAGATGAACAAACGACAGTGCACCATCATTTCCTCCATCGTCCCGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153193.3 |
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