Pregenerated sensors for SEC11A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025724Ensembl transcript IDs: ENSMUST00000026818.12, ENSMUST00000117383.8, ENSMUST00000119980.2, ENSMUST00000120285.8
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AACCCTGTGATTGACAGTCCCCTTGTGTGCACTCCACGGTGCACATaGACCCGCCCACACAGCCTCGGGTGTGGAAACACAAAGCAATGC | + |
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Preference number: 1 (lower is better) Translates to: NPVIDSPLVCTPRCT*TRPHSLGCGNTKQC Trigger: GCATTGCTTTGTGTTTCCACACCCGAGGCTGTGTGGGCGGGTGCATGTGCACCGTGGAGTGCACACAAGGGGACTGTCAATCACAGGGTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026818.12 |
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| 3UTR TCA 90 bp | CGCCTCAATATGTGCCATTCCTACTGTAAGGAGGAACGACAGGTTTaGACTCATGCAGAGCTGTGTTTTCATTTACAGAACTCTGTAGGC | + |
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Preference number: 1 (lower is better) Translates to: RLNMCHSYCKEERQV*THAELCFHLQNSVG Trigger: GCCTACAGAGTTCTGTAAATGAAAACACAGCTCTGCATGAGTTCAAACCTGTCGTTCCTCCTTACAGTAGGAATGGCACATATTGAGGCG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026818.12 |
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| 3UTR GCA 72 bp | CCTGTGATTGACAGTCCCCTTGTGTGCACTCCACGGTaGACATGCACCCGCCCACACAGCCTCGGGTGTGGA | + |
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Preference number: 3 (lower is better) Translates to: PVIDSPLVCTPR*TCTRPHSLGCG Trigger: TCCACACCCGAGGCTGTGTGGGCGGGTGCATGTGCACCGTGGAGTGCACACAAGGGGACTGTCAATCACAGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026818.12 |
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| 3UTR GCA 72 bp | ATTGACAGTCCCCTTGTGTGCACTCCACGGTGCACATaGACCCGCCCACACAGCCTCGGGTGTGGAAACACA | + |
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Preference number: 3 (lower is better) Translates to: IDSPLVCTPRCT*TRPHSLGCGNT Trigger: TGTGTTTCCACACCCGAGGCTGTGTGGGCGGGTGCATGTGCACCGTGGAGTGCACACAAGGGGACTGTCAAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026818.12 |
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| 3UTR TCA 72 bp | ATGTGCCATTCCTACTGTAAGGAGGAACGACAGGTTTaGACTCATGCAGAGCTGTGTTTTCATTTACAGAAC | + |
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Preference number: 3 (lower is better) Translates to: MCHSYCKEERQV*THAELCFHLQN Trigger: GTTCTGTAAATGAAAACACAGCTCTGCATGAGTTCAAACCTGTCGTTCCTCCTTACAGTAGGAATGGCACAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026818.12 |
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| CDS-3UTR CCA 90 bp | GCACATGCACCCGCCCACACAGCCTCGGGTGTGGAAACACAAAGCAATGCAAACCCTGCTGAGTTTTCATaGATCTTCAGGACTCGGTGC | + |
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Preference number: 4 (lower is better) Translates to: AHAPAHTASGVETQSNANPAEFS*IFRTRC Trigger: GCACCGAGTCCTGAAGATCCATGAAAACTCAGCAGG...GTTTGCATTGCTTTGTGTTTCCACACCCGAGGCTGTGTGGGCGGGTGCATGTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117383.8 |
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| CDS-3UTR GCA 90 bp | ACATGCACCCGCCCACACAGCCTCGGGTGTGGAAACACAAAGCAATGCAAACCATGCCAGCAAATACTGTaGTTTCTTTCCCCTGCTGAG | + |
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Preference number: 4 (lower is better) Translates to: TCTRPHSLGCGNTKQCKPCQQIL*FLSPAE Trigger: CTCAGCAGGGGAAAGAAAGCACAGTATTTGCTGGCA...TGGTTTGCATTGCTTTGTGTTTCCACACCCGAGGCTGTGTGGGCGGGTGCATGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117383.8 |
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| CDS-3UTR GCA 90 bp | ACATGCACCCGCCCACACAGCCTCGGGTGTGGAAACACAAAGCAATGCAAACCAAGGAACAAACCCTCTTaGTCTCCCCACAACATCTTT | + |
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Preference number: 4 (lower is better) Translates to: TCTRPHSLGCGNTKQCKPRNKPS*SPHNIF Trigger: AAAGATGTTGTGGGGAGAGCAAGAGGGTTTGTTCCT...TGGTTTGCATTGCTTTGTGTTTCCACACCCGAGGCTGTGTGGGCGGGTGCATGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026818.12 ENSMUST00000117383.8 |
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| CDS-3UTR TCA 90 bp | ACATGCACCCGCCCACACAGCCTCGGGTGTGGAAACACAAAGCAATGCAAACCACTTTGGTTAAAAACTTaGTATGCCCATCTTGCCAGC | + |
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Preference number: 4 (lower is better) Translates to: TCTRPHSLGCGNTKQCKPLWLKT*YAHLAS Trigger: GCTGGCAAGATGGGCATATCAAGTTTTTAACCAAAG...TGGTTTGCATTGCTTTGTGTTTCCACACCCGAGGCTGTGTGGGCGGGTGCATGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000117383.8 |
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| CDS-3UTR GCA 90 bp | ACATGCACCCGCCCACACAGCCTCGGGTGTGGAAACACAAAGCAATGCAAACCATTGATATGCCCATCTTaGCAGCAAATACTGTGCTTT | + |
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Preference number: 4 (lower is better) Translates to: TCTRPHSLGCGNTKQCKPLICPS*QQILCF Trigger: AAAGCACAGTATTTGCTGGCAAGATGGGCATATCAA...TGGTTTGCATTGCTTTGTGTTTCCACACCCGAGGCTGTGTGGGCGGGTGCATGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117383.8 |
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| CDS-3UTR TCA 90 bp | TCTACTCCAACATTCAGTAACAACAAGCACAGCAGCTTCCTAGGAACAGGGAGTCTTTCTTTCCCCTGCTaGGTTTTCATGGATCTTCAG | + |
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Preference number: 4 (lower is better) Translates to: STPTFSNNKHSSFLGTGSLSFPC*VFMDLQ Trigger: CTGAAGATCCATGAAAACTCAGCAGGGGAAAGAAAG...ACTCCCTGTTCCTAGGAAGCTGCTGTGCTTGTTGTTACTGAATGTTGGAGTAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117383.8 |
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| CDS-3UTR GCA 90 bp | TCAGGATCTACTCCAACATTCAGTAACAACAAGCACAGCAGCTTCCTAGGAACAAGGAACAAACCCTCTTaGTCTCCCCACAACATCTTT | + |
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Preference number: 4 (lower is better) Translates to: SGSTPTFSNNKHSSFLGTRNKPS*SPHNIF Trigger: AAAGATGTTGTGGGGAGAGCAAGAGGGTTTGTTCCT...TGTTCCTAGGAAGCTGCTGTGCTTGTTGTTACTGAATGTTGGAGTAGATCCTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026818.12 ENSMUST00000117383.8 |
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| CDS-3UTR CCA 90 bp | TCAGGATCTACTCCAACATTCAGTAACAACAAGCACAGCAGCTTCCTAGGAACAGAGCACCACTACAATTaGACTCTCACTTCCGGTTAT | + |
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Preference number: 4 (lower is better) Translates to: SGSTPTFSNNKHSSFLGTEHHYN*TLTSGY Trigger: ATAACCGGAAGTGAGAGTCCAATTGTAGTGGTGCTC...TGTTCCTAGGAAGCTGCTGTGCTTGTTGTTACTGAATGTTGGAGTAGATCCTGA 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026818.12 ENSMUST00000117383.8 |
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| CDS-3UTR GCA 90 bp | TTAAGACTTATGATCGCCTCAATATGTGCCATTCCTACTGTAAGGAGGAACGACTTGATATGCCCATCTTaGTTTTCATGGATCTTCAGG | + |
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Preference number: 4 (lower is better) Translates to: LRLMIASICAIPTVRRNDLICPS*FSWIFR Trigger: CCTGAAGATCCATGAAAAGCAAGATGGGCATATCAA...GTCGTTCCTCCTTACAGTAGGAATGGCACATATTGAGGCGATCATAAGTCTTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026818.12 |
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| CDS-3UTR GCA 90 bp | TCAGGATCTACTCCAACATTCAGTAACAACAAGCACAGCAGCTTCCTAGGAACAGTTAAAAACTTGATATaGCCATCTTGCCAGCAAATA | + |
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Preference number: 4 (lower is better) Translates to: SGSTPTFSNNKHSSFLGTVKNLI*PSCQQI Trigger: TATTTGCTGGCAAGATGGGCATATCAAGTTTTTAAC...TGTTCCTAGGAAGCTGCTGTGCTTGTTGTTACTGAATGTTGGAGTAGATCCTGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000117383.8 |
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| CDS-3UTR CCA 90 bp | TGTTTTCATTTACAGAACTCTGTAGGCACTTTTAAAGTGAAGCTTGGCTTCAAAGAGCACCACTACAATTaGACTCTCACTTCCGGTTAT | + |
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Preference number: 4 (lower is better) Translates to: CFHLQNSVGTFKVKLGFKEHHYN*TLTSGY Trigger: ATAACCGGAAGTGAGAGTCCAATTGTAGTGGTGCTC...TTTGAAGCCAAGCTTCACTTTAAAAGTGCCTACAGAGTTCTGTAAATGAAAACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026818.12 |
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| CDS-3UTR CAA 90 bp | CACCCGCCCACACAGCCTCGGGTGTGGAAACACAAAGCAATGCAAACCAGGGCTCTTGATATGCCCATCTaGCCAGCAAATACTGTGCTT | + |
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Preference number: 5 (lower is better) Translates to: HPPTQPRVWKHKAMQTRALDMPI*PANTVL Trigger: AAGCACAGTATTTGCTGGCAAGATGGGCATATCAAG...AGCCCTGGTTTGCATTGCTTTGTGTTTCCACACCCGAGGCTGTGTGGGCGGGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117383.8 |
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| CDS-3UTR CAA 90 bp | AACGTGTGTGTCCTCCGAAAATCCGCAATCACAGATCAGGATCTACTCCAACATCAGCCAGTGTTGTCCTaGTTTATAGAGACCTCGGTC | + |
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Preference number: 5 (lower is better) Translates to: NVCVLRKSAITDQDLLQHQPVLS*FIETSV Trigger: GACCGAGGTCTCTATAAACAAGGACAACACTGGCTG...ATGTTGGAGTAGATCCTGATCTGTGATTGCGGATTTTCGGAGGACACACACGTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026818.12 ENSMUST00000117383.8 |
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| CDS-3UTR CAA 90 bp | TCAGGATCTACTCCAACATTCAGTAACAACAAGCACAGCAGCTTCCTAGGAACACTTGATATGCCCATCTaGCTTTTCATGGATCTTCAG | + |
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Preference number: 5 (lower is better) Translates to: SGSTPTFSNNKHSSFLGTLDMPI*LFMDLQ Trigger: CTGAAGATCCATGAAAAGCAAGATGGGCATATCAAG...TGTTCCTAGGAAGCTGCTGTGCTTGTTGTTACTGAATGTTGGAGTAGATCCTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026818.12 |
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| CDS-3UTR CAA 90 bp | TGTTTTCATTTACAGAACTCTGTAGGCACTTTTAAAGTGAAGCTTGGCTTCAAACAGCCAGTGTTGTCCTaGTTTATAGAGACCTCGGTC | + |
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Preference number: 5 (lower is better) Translates to: CFHLQNSVGTFKVKLGFKQPVLS*FIETSV Trigger: GACCGAGGTCTCTATAAACAAGGACAACACTGGCTG...TTTGAAGCCAAGCTTCACTTTAAAAGTGCCTACAGAGTTCTGTAAATGAAAACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026818.12 |
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| CDS TCA 72 bp | ATCTTGCCAGCAAATACTGTGCTTTCTTTCCCCTGCTaGGTTTTCATGGATCTTCAGGACTCGGTGCACTAT | + |
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Preference number: 6 (lower is better) Translates to: ILPANTVLSFPC*VFMDLQDSVHY Trigger: ATAGTGCACCGAGTCCTGAAGATCCATGAAAACTCAGCAGGGGAAAGAAAGCACAGTATTTGCTGGCAAGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117383.8 |
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| CDS CAA 72 bp | CCCCACAACATCTTTCTTCTCCAGCCAGTGTTGTCCTaGTTTATAGAGACCTCGGTCATCAACAGCATTATT | + |
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Preference number: 6 (lower is better) Translates to: PHNIFLLQPVLS*FIETSVINSII Trigger: AATAATGCTGTTGATGACCGAGGTCTCTATAAACAAGGACAACACTGGCTGGAGAAGAAAGATGTTGTGGGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000026818.12 ENSMUST00000117383.8 ENSMUST00000119980.2 ENSMUST00000120285.8 |
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