Pregenerated sensors for SEC1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000040364Ensembl transcript IDs: ENSMUST00000040636.9
Found 61 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TGGGCAGGGCAGGGGGCCCTTCATCTCACACCTCCCACTGCCATCTaGTTGCCTCCTGCTAAAGAGCCTCTGTGTCCCACCATGCCTGAT | + |
|
Preference number: 1 (lower is better) Translates to: WAGQGALHLTPPTAI*LPPAKEPLCPTMPD Trigger: ATCAGGCATGGTGGGACACAGAGGCTCTTTAGCAGGAGGCAAGCAGATGGCAGTGGGAGGTGTGAGATGAAGGGCCCCCTGCCCTGCCCA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040636.9 |
||
| 3UTR GCA 90 bp | CAGGGCAGGGGGCCCTTCATCTCACACCTCCCACTGCCATCTGCTTaGCTCCTGCTAAAGAGCCTCTGTGTCCCACCATGCCTGATGAGA | + |
|
Preference number: 1 (lower is better) Translates to: QGRGPFISHLPLPSA*LLLKSLCVPPCLMR Trigger: TCTCATCAGGCATGGTGGGACACAGAGGCTCTTTAGCAGGAGGCAAGCAGATGGCAGTGGGAGGTGTGAGATGAAGGGCCCCCTGCCCTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040636.9 |
||
| 3UTR GCA 90 bp | CTGCCATCTGCTTGCCTCCTGCTAAAGAGCCTCTGTGTCCCACCATaGCTGATGAGACCAGAGCAGGGGACAATAACCAGGTCCCCAGCC | + |
|
Preference number: 1 (lower is better) Translates to: LPSACLLLKSLCVPP*LMRPEQGTITRSPA Trigger: GGCTGGGGACCTGGTTATTGTCCCCTGCTCTGGTCTCATCAGGCATGGTGGGACACAGAGGCTCTTTAGCAGGAGGCAAGCAGATGGCAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040636.9 |
||
| 3UTR CAA 90 bp | GCAGGGCAGGGGGCCCTTCATCTCACACCTCCCACTGCCATCTGCTaGCCTCCTGCTAAAGAGCCTCTGTGTCCCACCATGCCTGATGAG | + |
|
Preference number: 2 (lower is better) Translates to: AGQGALHLTPPTAIC*PPAKEPLCPTMPDE Trigger: CTCATCAGGCATGGTGGGACACAGAGGCTCTTTAGCAGGAGGCAAGCAGATGGCAGTGGGAGGTGTGAGATGAAGGGCCCCCTGCCCTGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040636.9 |
||
| 3UTR-3UTR GCA 90 bp | CTCCCACTGCCATCTGCTTGCCTCCTGCTAAAGAGCCTCTGTGTCCCACCATGCCTGTGGTCACTCAGCTaGAAAGCATGGAAGACAGGA | + |
|
Preference number: 2 (lower is better) Translates to: LPLPSACLLLKSLCVPPCLWSLS*KAWKTG Trigger: TCCTGTCTTCCATGCTTTGCAGCTGAGTGACCACAG...GCATGGTGGGACACAGAGGCTCTTTAGCAGGAGGCAAGCAGATGGCAGTGGGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040636.9 |
||
| 3UTR-3UTR CCA 90 bp | CGAGTGTGCTGCTGCTCAGCTAAGCCCAGACTGTGCTCAGAGCACCAGGAAGGCCTCAGCTGCAAAGCATaGAAGACAGGACTGGAAATC | + |
|
Preference number: 2 (lower is better) Translates to: RVCCCSAKPRLCSEHQEGLSCKA*KTGLEI Trigger: GATTTCCAGTCCTGTCTTCCATGCTTTGCAGCTGAG...GCCTTCCTGGTGCTCTGAGCACAGTCTGGGCTTAGCTGAGCAGCAGCACACTCG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040636.9 |
||
| 3UTR-3UTR CCA 90 bp | CCTCCCACTGCCATCTGCTTGCCTCCTGCTAAAGAGCCTCTGTGTCCCACCATGGACATCACTGACCTGTaGTCACTCAGCTGCAAAGCA | + |
|
Preference number: 2 (lower is better) Translates to: PPTAICLPPAKEPLCPTMDITDL*SLSCKA Trigger: TGCTTTGCAGCTGAGTGACCACAGGTCAGTGATGTC...CATGGTGGGACACAGAGGCTCTTTAGCAGGAGGCAAGCAGATGGCAGTGGGAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040636.9 |
||
| 3UTR-3UTR CCA 90 bp | TGCTGCTCAGCTAAGCCCAGACTGTGCTCAGAGCACCAGGAAGGCAGTAAGGTGCATGGAAGACAGGACTaGAAATCCACTGAGCATGTG | + |
|
Preference number: 2 (lower is better) Translates to: CCSAKPRLCSEHQEGSKVHGRQD*KSTEHV Trigger: CACATGCTCAGTGGATTTCCAGTCCTGTCTTCCATG...CACCTTACTGCCTTCCTGGTGCTCTGAGCACAGTCTGGGCTTAGCTGAGCAGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040636.9 |
||
| 3UTR-3UTR CCA 90 bp | GAGCAGAACCCCTCCACAGCCCCTGTATCAGCTCCTGCCTCCAGGTTCCTGCTGACGTGTTTACTGTCATaGTGTTTTATCAGAGCTGTA | + |
|
Preference number: 2 (lower is better) Translates to: EQNPSTAPVSAPASRFLLTCLLS*CFIRAV Trigger: TACAGCTCTGATAAAACACCATGACAGTAAACACGT...CAGCAGGAACCTGGAGGCAGGAGCTGATACAGGGGCTGTGGAGGGGTTCTGCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000040636.9 |
||
| 3UTR CAA 90 bp | GTCAGATTACTAGCCCTTCCTAGGGCTTTACAAAGTAAAAGCCATTaGTATCTTTGTTCAAGCAAGGCCAAGCAAACACGAAGCTGGGCA | + |
|
Preference number: 2 (lower is better) Translates to: VRLLALPRALQSKSH*YLCSSKAKQTRSWA Trigger: TGCCCAGCTTCGTGTTTGCTTGGCCTTGCTTGAACAAAGATACAAATGGCTTTTACTTTGTAAAGCCCTAGGAAGGGCTAGTAATCTGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040636.9 |
||
| 3UTR TCA 72 bp | GGCAGCAGGTTGAGCAAGGCACAGAGAGCAAGCCAGTaGGCAGAACCCCTCCACAGCCCCTGTATCAGCTCC | + |
|
Preference number: 3 (lower is better) Translates to: GSRLSKAQRASQ*AEPLHSPCISS Trigger: GGAGCTGATACAGGGGCTGTGGAGGGGTTCTGCTCACTGGCTTGCTCTCTGTGCCTTGCTCAACCTGCTGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040636.9 |
||
| 3UTR TCA 72 bp | CCTTCTACGCCCTTTGGGTGGCATGAGGCAGCAGGTTaGGCAAGGCACAGAGAGCAAGCCAGTGAGCAGAAC | + |
|
Preference number: 3 (lower is better) Translates to: PSTPFGWHEAAG*ARHREQASEQN Trigger: GTTCTGCTCACTGGCTTGCTCTCTGTGCCTTGCTCAACCTGCTGCCTCATGCCACCCAAAGGGCGTAGAAGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040636.9 |
||
| 3UTR TCA 72 bp | GCGAATGGTAGGCCTACAGTGGCTAGCAGTGGGCAATaGGAAGCTCAAAGCACCCGAGTGTGCTGCTGCTCA | + |
|
Preference number: 3 (lower is better) Translates to: ANGRPTVASSGQ*EAQSTRVCCCS Trigger: TGAGCAGCAGCACACTCGGGTGCTTTGAGCTTCTCATTGCCCACTGCTAGCCACTGTAGGCCTACCATTCGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040636.9 |
||
| 3UTR GCA 72 bp | ACCCGAGTGTGCTGCTGCTCAGCTAAGCCCAGACTGTaGTCAGAGCACCAGGAAGGCAGTAAGGTGACATCA | + |
|
Preference number: 3 (lower is better) Translates to: TRVCCCSAKPRL*SEHQEGSKVTS Trigger: TGATGTCACCTTACTGCCTTCCTGGTGCTCTGAGCACAGTCTGGGCTTAGCTGAGCAGCAGCACACTCGGGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040636.9 |
||
| 3UTR GCA 72 bp | GCTTGCCTCCTGCTAAAGAGCCTCTGTGTCCCACCATaGCTGATGAGACCAGAGCAGGGGACAATAACCAGG | + |
|
Preference number: 3 (lower is better) Translates to: ACLLLKSLCVPP*LMRPEQGTITR Trigger: CCTGGTTATTGTCCCCTGCTCTGGTCTCATCAGGCATGGTGGGACACAGAGGCTCTTTAGCAGGAGGCAAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040636.9 |
||
| 3UTR CCA 72 bp | TATCTTTGTTCAAGCAAGGCCAAGCAAACACGAAGCTaGGCAGGGCAGGGGGCCCTTCATCTCACACCTCCC | + |
|
Preference number: 3 (lower is better) Translates to: YLCSSKAKQTRS*AGQGALHLTPP Trigger: GGGAGGTGTGAGATGAAGGGCCCCCTGCCCTGCCCAGCTTCGTGTTTGCTTGGCCTTGCTTGAACAAAGATA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040636.9 |
||
| 3UTR TCA 72 bp | GCCCCTGTATCAGCTCCTGCCTCCAGGTTCCTGCTGTaGTTTTCCTCAGTGAAGGGCTGTGATGTGGAAGTG | + |
|
Preference number: 3 (lower is better) Translates to: APVSAPASRFLL*FSSVKGCDVEV Trigger: CACTTCCACATCACAGCCCTTCACTGAGGAAAATCACAGCAGGAACCTGGAGGCAGGAGCTGATACAGGGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040636.9 |
||
| 3UTR CCA 72 bp | ACAGCACTCCAGATGCAGCGAATGGTAGGCCTACAGTaGCTAGCAGTGGGCAATGAGAAGCTCAAAGCACCC | + |
|
Preference number: 3 (lower is better) Translates to: TALQMQRMVGLQ*LAVGNEKLKAP Trigger: GGGTGCTTTGAGCTTCTCATTGCCCACTGCTAGCCACTGTAGGCCTACCATTCGCTGCATCTGGAGTGCTGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040636.9 |
||
| CDS-3UTR GCA 90 bp | GTGAGCAGAACCCCTCCACAGCCCCTGTATCAGCTCCTGCCTCCAGGTTCCTGCTGGCTCCCATTCACCTaGAGGCCACGCAGGAAGGCC | + |
|
Preference number: 4 (lower is better) Translates to: VSRTPPQPLYQLLPPGSCWLPFT*RPRRKA Trigger: GGCCTTCCTGCGTGGCCTGCAGGTGAATGGGAGCCA...GCAGGAACCTGGAGGCAGGAGCTGATACAGGGGCTGTGGAGGGGTTCTGCTCAC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040636.9 |
||
| CDS-3UTR CCA 90 bp | GTGAGCAGAACCCCTCCACAGCCCCTGTATCAGCTCCTGCCTCCAGGTTCCTGCCCGGGGCATGTGTCTTaGGGGGAAGACCACAAGGGA | + |
|
Preference number: 4 (lower is better) Translates to: VSRTPPQPLYQLLPPGSCPGHVS*GEDHKG Trigger: TCCCTTGTGGTCTTCCCCCCAAGACACATGCCCCGG...GCAGGAACCTGGAGGCAGGAGCTGATACAGGGGCTGTGGAGGGGTTCTGCTCAC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000040636.9 |
||
| CDS-3UTR GCA 90 bp | CTCAAAGCACCCGAGTGTGCTGCTGCTCAGCTAAGCCCAGACTGTGCTCAGAGCGCCATTGCCAGCAAATaGCACGTCCCCTCGGGAGGC | + |
|
Preference number: 4 (lower is better) Translates to: LKAPECAAAQLSPDCAQSAIASK*HVPSGG Trigger: GCCTCCCGAGGGGACGTGGCATTTGCTGGCAATGGC...GCTCTGAGCACAGTCTGGGCTTAGCTGAGCAGCAGCACACTCGGGTGCTTTGAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040636.9 |
||
| CDS-3UTR TCA 90 bp | ACTGCCATCTGCTTGCCTCCTGCTAAAGAGCCTCTGTGTCCCACCATGCCTGATCTTGGGGGCTCTGGCTaGGGCATGGCCAGAGCCTAC | + |
|
Preference number: 4 (lower is better) Translates to: TAICLPPAKEPLCPTMPDLGGSG*GMARAY Trigger: GTAGGCTCTGGCCATGCCTCAGCCAGAGCCCCCAAG...ATCAGGCATGGTGGGACACAGAGGCTCTTTAGCAGGAGGCAAGCAGATGGCAGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040636.9 |
||
| CDS-3UTR GCA 90 bp | AGCTGTAGAAACCCTAGCTACACACTGGCCTCCATGAGACAGCACTCCAGATGCCTGTCCCAGGTCAGCTaGGATGCCCACCCACTCGGG | + |
|
Preference number: 4 (lower is better) Translates to: SCRNPSYTLASMRQHSRCLSQVS*DAHPLG Trigger: CCCGAGTGGGTGGGCATCGCAGCTGACCTGGGACAG...GCATCTGGAGTGCTGTCTCATGGAGGCCAGTGTGTAGCTAGGGTTTCTACAGCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040636.9 |
||
| CDS-3UTR CCA 90 bp | GAGCAGAACCCCTCCACAGCCCCTGTATCAGCTCCTGCCTCCAGGTTCCTGCTGCCAGTGCAAACAGCGTaGCATATTCGCCCATCTGGT | + |
|
Preference number: 4 (lower is better) Translates to: EQNPSTAPVSAPASRFLLPVQTA*HIRPSG Trigger: ACCAGATGGGCGAATATGCCACGCTGTTTGCACTGG...CAGCAGGAACCTGGAGGCAGGAGCTGATACAGGGGCTGTGGAGGGGTTCTGCTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040636.9 |
||
| CDS-3UTR CCA 90 bp | ACCAGGTCCCCAGCCAGGGCTGAGGTAGCTCAGAGGTTTTGTGCTCTAGGCGAGTCCCCTCGGCGCACATaGACACCCACAAAGGTACTT | + |
|
Preference number: 4 (lower is better) Translates to: TRSPARAEVAQRFCALGESPRRT*TPTKVL Trigger: AAGTACCTTTGTGGGTGTCCATGTGCGCCGAGGGGA...CTCGCCTAGAGCACAAAACCTCTGAGCTACCTCAGCCCTGGCTGGGGACCTGGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000040636.9 |
||
| CDS-3UTR TCA 90 bp | GTCACTCAGCTGCAAAGCATGGAAGACAGGACTGGAAATCCACTGAGCATGTGCCAGTGTCCCCACCCGTaGGGTAGGCAGCCCAGATCC | + |
|
Preference number: 4 (lower is better) Translates to: VTQLQSMEDRTGNPLSMCQCPHP*GRQPRS Trigger: GGATCTGGGCTGCCTACCTCACGGGTGGGGACACTG...GCACATGCTCAGTGGATTTCCAGTCCTGTCTTCCATGCTTTGCAGCTGAGTGAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040636.9 |
||
| CDS-3UTR TCA 90 bp | CTCCCACTGCCATCTGCTTGCCTCCTGCTAAAGAGCCTCTGTGTCCCACCATGCAAGCTGCTTCTGGCTTaGAAACCGTGTGGAAGGGGG | + |
|
Preference number: 4 (lower is better) Translates to: LPLPSACLLLKSLCVPPCKLLLA*KPCGRG Trigger: CCCCCTTCCACACGGTTTTCAAGCCAGAAGCAGCTT...GCATGGTGGGACACAGAGGCTCTTTAGCAGGAGGCAAGCAGATGGCAGTGGGAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040636.9 |
||
| CDS-3UTR CCA 90 bp | GTCACTCAGCTGCAAAGCATGGAAGACAGGACTGGAAATCCACTGAGCATGTGCGAAGACCACAAGGGATaGCGAGGCCCAGGGGCCAGG | + |
|
Preference number: 4 (lower is better) Translates to: VTQLQSMEDRTGNPLSMCEDHKG*RGPGAR Trigger: CCTGGCCCCTGGGCCTCGCCATCCCTTGTGGTCTTC...GCACATGCTCAGTGGATTTCCAGTCCTGTCTTCCATGCTTTGCAGCTGAGTGAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040636.9 |
||
| CDS-3UTR TCA 90 bp | CTCAAAGCACCCGAGTGTGCTGCTGCTCAGCTAAGCCCAGACTGTGCTCAGAGCCCATGTCATCACTGGTaGCCACGAAGACTGGAGATG | + |
|
Preference number: 4 (lower is better) Translates to: LKAPECAAAQLSPDCAQSPCHHW*PRRLEM Trigger: CATCTCCAGTCTTCGTGGTCACCAGTGATGACATGG...GCTCTGAGCACAGTCTGGGCTTAGCTGAGCAGCAGCACACTCGGGTGCTTTGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040636.9 |
||
| CDS-3UTR CCA 90 bp | CCACAGCCCCTGTATCAGCTCCTGCCTCCAGGTTCCTGCTGTGATTTTCCTCAGAGAAGAGGTAGAAGGTaGAGAGGGGTGGGCAGATGG | + |
|
Preference number: 4 (lower is better) Translates to: PQPLYQLLPPGSCCDFPQRRGRR*RGVGRW Trigger: CCATCTGCCCACCCCTCTCCACCTTCTACCTCTTCT...CTGAGGAAAATCACAGCAGGAACCTGGAGGCAGGAGCTGATACAGGGGCTGTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000040636.9 |
||
| CDS-3UTR CCA 90 bp | GTGGGCAATGAGAAGCTCAAAGCACCCGAGTGTGCTGCTGCTCAGCTAAGCCCAAGAGCCTACTGTGTTTaGCTGTCCCAGGTCAGCTGC | + |
|
Preference number: 4 (lower is better) Translates to: VGNEKLKAPECAAAQLSPRAYCV*LSQVSC Trigger: GCAGCTGACCTGGGACAGCCAAACACAGTAGGCTCT...TGGGCTTAGCTGAGCAGCAGCACACTCGGGTGCTTTGAGCTTCTCATTGCCCAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040636.9 |
||
| CDS-3UTR CCA 90 bp | ACTGCCATCTGCTTGCCTCCTGCTAAAGAGCCTCTGTGTCCCACCATGCCTGATATGGCCCTGAGTCGCTaGAGCACTGCTTGGATCCTT | + |
|
Preference number: 4 (lower is better) Translates to: TAICLPPAKEPLCPTMPDMALSR*STAWIL Trigger: AAGGATCCAAGCAGTGCTCCAGCGACTCAGGGCCAT...ATCAGGCATGGTGGGACACAGAGGCTCTTTAGCAGGAGGCAAGCAGATGGCAGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040636.9 |
||
| CDS-3UTR CCA 90 bp | GTGTTTTATCAGAGCTGTAGAAACCCTAGCTACACACTGGCCTCCATGAGACAGCCACGCAGGAAGGCCTaGGCCTCCTCACGCACATGG | + |
|
Preference number: 4 (lower is better) Translates to: VFYQSCRNPSYTLASMRQPRRKA*ASSRTW Trigger: CCATGTGCGTGAGGAGGCCCAGGCCTTCCTGCGTGG...CTGTCTCATGGAGGCCAGTGTGTAGCTAGGGTTTCTACAGCTCTGATAAAACAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040636.9 |
||
| CDS-3UTR GCA 90 bp | CTCCATGAGACAGCACTCCAGATGCAGCGAATGGTAGGCCTACAGTGGCTAGCAGCACTGCATGAGCAATaGAATGTCCTTGGCAGGCGA | + |
|
Preference number: 4 (lower is better) Translates to: LHETALQMQRMVGLQWLAALHEQ*NVLGRR Trigger: TCGCCTGCCAAGGACATTGCATTGCTCATGCAGTGC...TGCTAGCCACTGTAGGCCTACCATTCGCTGCATCTGGAGTGCTGTCTCATGGAG 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040636.9 |
||
| CDS-3UTR CCA 90 bp | ATGGTAGGCCTACAGTGGCTAGCAGTGGGCAATGAGAAGCTCAAAGCACCCGAGACAAAGGTACTTGGCTaGCTCCCATTCACCTGCAGG | + |
|
Preference number: 4 (lower is better) Translates to: MVGLQWLAVGNEKLKAPETKVLG*LPFTCR Trigger: CCTGCAGGTGAATGGGAGCCAGCCAAGTACCTTTGT...CTCGGGTGCTTTGAGCTTCTCATTGCCCACTGCTAGCCACTGTAGGCCTACCAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040636.9 |
||
| CDS-3UTR CCA 90 bp | ATGGTAGGCCTACAGTGGCTAGCAGTGGGCAATGAGAAGCTCAAAGCACCCGAGCAGGTAAGCTGCTTCTaGCTTGAAAACCGTGTGGAA | + |
|
Preference number: 4 (lower is better) Translates to: MVGLQWLAVGNEKLKAPEQVSCF*LENRVE Trigger: TTCCACACGGTTTTCAAGCCAGAAGCAGCTTACCTG...CTCGGGTGCTTTGAGCTTCTCATTGCCCACTGCTAGCCACTGTAGGCCTACCAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040636.9 |
||
| CDS-3UTR CCA 90 bp | ACCATTGTCAGATTACTAGCCCTTCCTAGGGCTTTACAAAGTAAAAGCCATTTGAAGCTTCAAGCCTGCTaGGGGCGACAGTGCTCCTGT | + |
|
Preference number: 4 (lower is better) Translates to: TIVRLLALPRALQSKSHLKLQAC*GRQCSC Trigger: ACAGGAGCACTGTCGCCCCCAGCAGGCTTGAAGCTT...CAAATGGCTTTTACTTTGTAAAGCCCTAGGAAGGGCTAGTAATCTGACAATGGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040636.9 |
||
| CDS-3UTR TCA 90 bp | CTAGGGCTTTACAAAGTAAAAGCCATTTGTATCTTTGTTCAAGCAAGGCCAAGCTTGGCAGGCGATCCCTaGAGGCCATTGCCAGCAAAT | + |
|
Preference number: 4 (lower is better) Translates to: LGLYKVKAICIFVQARPSLAGDP*RPLPAN Trigger: ATTTGCTGGCAATGGCCTTCAGGGATCGCCTGCCAA...GCTTGGCCTTGCTTGAACAAAGATACAAATGGCTTTTACTTTGTAAAGCCCTAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040636.9 |
||
| CDS-3UTR TCA 90 bp | AATGTGGAATTTATTACCATTGTCAGATTACTAGCCCTTCCTAGGGCTTTACAATCCACACCTTGGGCATaGCACGCACATAGTCCCCTC | + |
|
Preference number: 4 (lower is better) Translates to: NVEFITIVRLLALPRALQSTPWA*HAHSPL Trigger: GAGGGGACTATGTGCGTGTCATGCCCAAGGTGTGGA...TTGTAAAGCCCTAGGAAGGGCTAGTAATCTGACAATGGTAATAAATTCCACATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040636.9 |
||
| CDS-3UTR GCA 90 bp | CTAGGGCTTTACAAAGTAAAAGCCATTTGTATCTTTGTTCAAGCAAGGCCAAGCACGGTGTGGTTGCACTaGATGAGCAATGCAATGTCC | + |
|
Preference number: 4 (lower is better) Translates to: LGLYKVKAICIFVQARPSTVWLH*MSNAMS Trigger: GGACATTGCATTGCTCATGCAGTGCAACCACACCGT...GCTTGGCCTTGCTTGAACAAAGATACAAATGGCTTTTACTTTGTAAAGCCCTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040636.9 |
||
| CDS GCA 90 bp | TGCAATGTCCTTGGCAGGCGATCCCTGAAGGCCATTGCCAGCAAATaGCACGTCCCCTCGGGAGGCAGTGATGCTCTTCCGGCACCAGGC | + |
|
Preference number: 5 (lower is better) Translates to: CNVLGRRSLKAIASK*HVPSGGSDALPAPG Trigger: GCCTGGTGCCGGAAGAGCATCACTGCCTCCCGAGGGGACGTGGCATTTGCTGGCAATGGCCTTCAGGGATCGCCTGCCAAGGACATTGCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040636.9 |
||
| CDS CCA 90 bp | CTGAGTCGCTGGAGCACTGCTTGGATCCTTCTAGGCCGGCTTGTTTaGGGCCACCAAGCTTCAAGCCTGCTGGGGGCGACAGTGCTCCTG | + |
|
Preference number: 5 (lower is better) Translates to: LSRWSTAWILLGRLV*GHQASSLLGATVLL Trigger: CAGGAGCACTGTCGCCCCCAGCAGGCTTGAAGCTTGGTGGCCCCAAACAAGCCGGCCTAGAAGGATCCAAGCAGTGCTCCAGCGACTCAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040636.9 |
||
| CDS-3UTR CAA 90 bp | ACCAGGTCCCCAGCCAGGGCTGAGGTAGCTCAGAGGTTTTGTGCTCTAGGCGAGGTGATGACGGTGTGGTaGCACTGCATGAGCAATGCA | + |
|
Preference number: 5 (lower is better) Translates to: TRSPARAEVAQRFCALGEVMTVW*HCMSNA Trigger: TGCATTGCTCATGCAGTGCAACCACACCGTCATCAC...CTCGCCTAGAGCACAAAACCTCTGAGCTACCTCAGCCCTGGCTGGGGACCTGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040636.9 |
||
| CDS-3UTR CAA 90 bp | ATGGTAGGCCTACAGTGGCTAGCAGTGGGCAATGAGAAGCTCAAAGCACCCGAGCAGAGCCTACTGTGTTaGGCTGTCCCAGGTCAGCTG | + |
|
Preference number: 5 (lower is better) Translates to: MVGLQWLAVGNEKLKAPEQSLLC*AVPGQL Trigger: CAGCTGACCTGGGACAGCCAAACACAGTAGGCTCTG...CTCGGGTGCTTTGAGCTTCTCATTGCCCACTGCTAGCCACTGTAGGCCTACCAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040636.9 |
||
| CDS GCA 90 bp | AAAGGTCCCCAGCGTGATGACGGTGTGGTTGCACTGCATGAGCAATaGAATGTCCTTGGCAGGCGATCCCTGAAGGCCATTGCCAGCAAA | + |
|
Preference number: 5 (lower is better) Translates to: KGPQRDDGVVALHEQ*NVLGRRSLKAIASK Trigger: TTTGCTGGCAATGGCCTTCAGGGATCGCCTGCCAAGGACATTGCATTGCTCATGCAGTGCAACCACACCGTCATCACGCTGGGGACCTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040636.9 |
||
| CDS CCA 90 bp | AGACACCACGAAAATCACGAAGAAGAGGTAGAAGGTGGAGAGGGGTaGGCAGATGGCCCTGAGTCGCTGGAGCACTGCTTGGATCCTTCT | + |
|
Preference number: 5 (lower is better) Translates to: RHHENHEEEVEGGEG*ADGPESLEHCLDPS Trigger: AGAAGGATCCAAGCAGTGCTCCAGCGACTCAGGGCCATCTGCCCACCCCTCTCCACCTTCTACCTCTTCTTCGTGATTTTCGTGGTGTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040636.9 |
||
| CDS-3UTR CAA 90 bp | ACCATTGTCAGATTACTAGCCCTTCCTAGGGCTTTACAAAGTAAAAGCCATTTGGTGTGGAAGGGGGAGTaGGGCTGGGTAAAGTTAGCC | + |
|
Preference number: 5 (lower is better) Translates to: TIVRLLALPRALQSKSHLVWKGE*GWVKLA Trigger: GGCTAACTTTACCCAGCCCAACTCCCCCTTCCACAC...CAAATGGCTTTTACTTTGTAAAGCCCTAGGAAGGGCTAGTAATCTGACAATGGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040636.9 |
||
| CDS-3UTR CAA 90 bp | AATGTGGAATTTATTACCATTGTCAGATTACTAGCCCTTCCTAGGGCTTTACAATTCCCCAGGCGGCCTTaGACTCTGATGGTGAACATG | + |
|
Preference number: 5 (lower is better) Translates to: NVEFITIVRLLALPRALQFPRRP*TLMVNM Trigger: CATGTTCACCATCAGAGTCAAAGGCCGCCTGGGGAA...TTGTAAAGCCCTAGGAAGGGCTAGTAATCTGACAATGGTAATAAATTCCACATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040636.9 |
||
| CDS CCA 72 bp | TCTGATGGTGAACATGCCCTCCCGGGGCATGTGTCTTaGGGGGAAGACCACAAGGGATGGCGAGGCCCAGGG | + |
|
Preference number: 6 (lower is better) Translates to: SDGEHALPGHVS*GEDHKGWRGPG Trigger: CCCTGGGCCTCGCCATCCCTTGTGGTCTTCCCCCCAAGACACATGCCCCGGGAGGGCATGTTCACCATCAGA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040636.9 |
||
| CDS CCA 72 bp | CCTCGGCGCACATGGACACCCACAAAGGTACTTGGCTaGCTCCCATTCACCTGCAGGCCACGCAGGAAGGCC | + |
|
Preference number: 6 (lower is better) Translates to: PRRTWTPTKVLG*LPFTCRPRRKA Trigger: GGCCTTCCTGCGTGGCCTGCAGGTGAATGGGAGCCAGCCAAGTACCTTTGTGGGTGTCCATGTGCGCCGAGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040636.9 |
||
| CDS CAA 90 bp | CCTGAGTCGCTGGAGCACTGCTTGGATCCTTCTAGGCCGGCTTGTTaGGGGCCACCAAGCTTCAAGCCTGCTGGGGGCGACAGTGCTCCT | + |
|
Preference number: 6 (lower is better) Translates to: PESLEHCLDPSRPAC*GPPSFKPAGGDSAP Trigger: AGGAGCACTGTCGCCCCCAGCAGGCTTGAAGCTTGGTGGCCCCAAACAAGCCGGCCTAGAAGGATCCAAGCAGTGCTCCAGCGACTCAGG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040636.9 |
||
| CDS GCA 72 bp | CTTGGCAGGCGATCCCTGAAGGCCATTGCCAGCAAATaGCACGTCCCCTCGGGAGGCAGTGATGCTCTTCCG | + |
|
Preference number: 6 (lower is better) Translates to: LGRRSLKAIASK*HVPSGGSDALP Trigger: CGGAAGAGCATCACTGCCTCCCGAGGGGACGTGGCATTTGCTGGCAATGGCCTTCAGGGATCGCCTGCCAAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040636.9 |
||
| CDS CCA 72 bp | GTCCCCTCGGCGCACATGGACACCCACAAAGGTACTTaGCTGGCTCCCATTCACCTGCAGGCCACGCAGGAA | + |
|
Preference number: 6 (lower is better) Translates to: VPSAHMDTHKGT*LAPIHLQATQE Trigger: TTCCTGCGTGGCCTGCAGGTGAATGGGAGCCAGCCAAGTACCTTTGTGGGTGTCCATGTGCGCCGAGGGGAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040636.9 |
||
| CDS CAA 72 bp | CTGGAGCACTGCTTGGATCCTTCTAGGCCGGCTTGTTaGGGGCCACCAAGCTTCAAGCCTGCTGGGGGCGAC | + |
|
Preference number: 6 (lower is better) Translates to: LEHCLDPSRPAC*GPPSFKPAGGD Trigger: GTCGCCCCCAGCAGGCTTGAAGCTTGGTGGCCCCAAACAAGCCGGCCTAGAAGGATCCAAGCAGTGCTCCAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040636.9 |
||
| CDS CAA 72 bp | AGTCCCCTCGGCGCACATGGACACCCACAAAGGTACTaGGCTGGCTCCCATTCACCTGCAGGCCACGCAGGA | + |
|
Preference number: 6 (lower is better) Translates to: SPLGAHGHPQRY*AGSHSPAGHAG Trigger: TCCTGCGTGGCCTGCAGGTGAATGGGAGCCAGCCAAGTACCTTTGTGGGTGTCCATGTGCGCCGAGGGGACT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040636.9 |
||
| CDS GCA 72 bp | AGCCTACTGTGTTTGGCTGTCCCAGGTCAGCTGCGATaGCCACCCACTCGGGCAGGTAAGCTGCTTCTGGCT | + |
|
Preference number: 6 (lower is better) Translates to: SLLCLAVPGQLR*PPTRAGKLLLA Trigger: AGCCAGAAGCAGCTTACCTGCCCGAGTGGGTGGGCATCGCAGCTGACCTGGGACAGCCAAACACAGTAGGCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040636.9 |
||
| CDS CCA 72 bp | TGGAGCACTGCTTGGATCCTTCTAGGCCGGCTTGTTTaGGGCCACCAAGCTTCAAGCCTGCTGGGGGCGACA | + |
|
Preference number: 6 (lower is better) Translates to: WSTAWILLGRLV*GHQASSLLGAT Trigger: TGTCGCCCCCAGCAGGCTTGAAGCTTGGTGGCCCCAAACAAGCCGGCCTAGAAGGATCCAAGCAGTGCTCCA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040636.9 |
||
| CDS CCA 72 bp | AAGGTGGAGAGGGGTGGGCAGATGGCCCTGAGTCGCTaGAGCACTGCTTGGATCCTTCTAGGCCGGCTTGTT | + |
|
Preference number: 6 (lower is better) Translates to: KVERGGQMALSR*STAWILLGRLV Trigger: AACAAGCCGGCCTAGAAGGATCCAAGCAGTGCTCCAGCGACTCAGGGCCATCTGCCCACCCCTCTCCACCTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040636.9 |
||
| CDS CCA 72 bp | CAGGGGCCAGGCACCAGACTCAGGCGCCGGTGGCAGTaGAAGATGGTAGACACCACGAAAATCACGAAGAAG | + |
|
Preference number: 6 (lower is better) Translates to: QGPGTRLRRRWQ*KMVDTTKITKK Trigger: CTTCTTCGTGATTTTCGTGGTGTCTACCATCTTCCACTGCCACCGGCGCCTGAGTCTGGTGCCTGGCCCCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040636.9 |
||
| CDS CCA 72 bp | GCCCAGATCCCAAAGGTCCCCAGCGTGATGACGGTGTaGTTGCACTGCATGAGCAATGCAATGTCCTTGGCA | + |
|
Preference number: 6 (lower is better) Translates to: AQIPKVPSVMTV*LHCMSNAMSLA Trigger: TGCCAAGGACATTGCATTGCTCATGCAGTGCAACCACACCGTCATCACGCTGGGGACCTTTGGGATCTGGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040636.9 |
||
| CDS GCA 72 bp | CAGCGTGATGACGGTGTGGTTGCACTGCATGAGCAATaGAATGTCCTTGGCAGGCGATCCCTGAAGGCCATT | + |
|
Preference number: 6 (lower is better) Translates to: QRDDGVVALHEQ*NVLGRRSLKAI Trigger: AATGGCCTTCAGGGATCGCCTGCCAAGGACATTGCATTGCTCATGCAGTGCAACCACACCGTCATCACGCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040636.9 |
||