Pregenerated sensors for SEBOX (Mus musculus)
Ensembl gene IDs: ENSMUSG00000001103Ensembl transcript IDs: ENSMUST00000001130.8, ENSMUST00000125670.3
Found 57 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ATGGGGCCTAGGCAGGAGGTCTGTGGTGGGCATGCTGAAGTATACTaGGCTGAACTGGTAGGGTGCAGAGGATGGCTTGATGTTCCAGGG | + |
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Preference number: 1 (lower is better) Translates to: MGPRQEVCGGHAEVY*AELVGCRGWLDVPG Trigger: CCCTGGAACATCAAGCCATCCTCTGCACCCTACCAGTTCAGCTCAGTATACTTCAGCATGCCCACCACAGACCTCCTGCCTAGGCCCCAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000125670.3 |
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| 3UTR CCA 90 bp | CTGAACCTTGAAAATGTGGGTCCCAGCAGACCAGTACCCTGCCCCTaGCACATATGTGAGGTCCTGAAGGGCCCTCTTAGACTGGTGGCT | + |
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Preference number: 1 (lower is better) Translates to: LNLENVGPSRPVPCP*HICEVLKGPLRLVA Trigger: AGCCACCAGTCTAAGAGGGCCCTTCAGGACCTCACATATGTGCCAGGGGCAGGGTACTGGTCTGCTGGGACCCACATTTTCAAGGTTCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000001130.8 ENSMUST00000125670.3 |
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| 3UTR-3UTR CCA 90 bp | CAACTCTGCCCTGGACCCAAAATGGGGCCTAGGCAGGAGGTCTGTGGTGGGCATTTCTGGAACCACACCTaGATCTTGGCTTCAGGCAGG | + |
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Preference number: 2 (lower is better) Translates to: QLCPGPKMGPRQEVCGGHFWNHT*ILASGR Trigger: CCTGCCTGAAGCCAAGATCCAGGTGTGGTTCCAGAA...ATGCCCACCACAGACCTCCTGCCTAGGCCCCATTTTGGGTCCAGGGCAGAGTTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000125670.3 |
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| 3UTR-3UTR CCA 90 bp | CACATATGTGAGGTCCTGAAGGGCCCTCTTAGACTGGTGGCTGCCCCTTTAGAGGCCCTGGACCCAAAATaGGGCCTAGGCAGGAGGTCT | + |
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Preference number: 2 (lower is better) Translates to: HICEVLKGPLRLVAAPLEALDPK*GLGRRS Trigger: AGACCTCCTGCCTAGGCCCCATTTTGGGTCCAGGGC...CTCTAAAGGGGCAGCCACCAGTCTAAGAGGGCCCTTCAGGACCTCACATATGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000125670.3 |
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| 3UTR-3UTR TCA 90 bp | CCAAAAGGACCAGGATGCCGAGTTTTAGGAGGCAGGCTCCAGTCACAGGACCCCCTGGCTTTCTGTCCTTaGTTCTCTTGGCTCGCCGAT | + |
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Preference number: 2 (lower is better) Translates to: PKGPGCRVLGGRLQSQDPLAFCP*FSWLAD Trigger: ATCGGCGAGCCAAGAGAATCAAGGACAGAAAGCCAG...GGGGTCCTGTGACTGGAGCCTGCCTCCTAAAACTCGGCATCCTGGTCCTTTTGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000125670.3 |
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| 3UTR-3UTR TCA 90 bp | CACATATGTGAGGTCCTGAAGGGCCCTCTTAGACTGGTGGCTGCCCCTTTAGAGGTGCAGAGGATGGCTTaGTGTTCCAGGGTCCCAAGG | + |
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Preference number: 2 (lower is better) Translates to: HICEVLKGPLRLVAAPLEVQRMA*CSRVPR Trigger: CCTTGGGACCCTGGAACATCAAGCCATCCTCTGCAC...CTCTAAAGGGGCAGCCACCAGTCTAAGAGGGCCCTTCAGGACCTCACATATGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000125670.3 |
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| 3UTR-3UTR CCA 90 bp | CCAAAAGGACCAGGATGCCGAGTTTTAGGAGGCAGGCTCCAGTCACAGGACCCCATGTGCTCTGTCCTATaGGCTACAAGGCCAGAGCCA | + |
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Preference number: 2 (lower is better) Translates to: PKGPGCRVLGGRLQSQDPMCSVL*ATRPEP Trigger: TGGCTCTGGCCTTGTAGCCCATAGGACAGAGCACAT...GGGGTCCTGTGACTGGAGCCTGCCTCCTAAAACTCGGCATCCTGGTCCTTTTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000001130.8 ENSMUST00000125670.3 |
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| 3UTR-3UTR TCA 90 bp | TGTGAGGTCCTGAAGGGCCCTCTTAGACTGGTGGCTGCCCCTTTAGAGGAAGGATATTACACATGCCAGTaGTACCACACACCCCACCCC | + |
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Preference number: 2 (lower is better) Translates to: CEVLKGPLRLVAAPLEEGYYTCQ*YHTPHP Trigger: GGGGTGGGGTGTGTGGTATCACTGGCATGTGTAATA...TCCTTCCTCTAAAGGGGCAGCCACCAGTCTAAGAGGGCCCTTCAGGACCTCACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000001130.8 ENSMUST00000125670.3 |
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| 3UTR-3UTR TCA 90 bp | ACAGGACCCCAACTAAACTGGTGGAGACTAGGGATGGGGGTGGGAGTCCCTGAGCATGCTGAAGTATACTaGGCTGAACTGGTAGGGTGC | + |
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Preference number: 2 (lower is better) Translates to: TGPQLNWWRLGMGVGVPEHAEVY*AELVGC Trigger: GCACCCTACCAGTTCAGCTCAGTATACTTCAGCATG...CTCAGGGACTCCCACCCCCATCCCTAGTCTCCACCAGTTTAGTTGGGGTCCTGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000125670.3 |
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| 3UTR-3UTR CCA 90 bp | TGCAGAGGATGGCTTGATGTTCCAGGGTCCCAAGGTAGCTGGGGAGTGTCTGGAATGTGCTCTGTCCTATaGGCTACAAGGCCAGAGCCA | + |
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Preference number: 2 (lower is better) Translates to: CRGWLDVPGSQGSWGVSGMCSVL*ATRPEP Trigger: TGGCTCTGGCCTTGTAGCCCATAGGACAGAGCACAT...TCCAGACACTCCCCAGCTACCTTGGGACCCTGGAACATCAAGCCATCCTCTGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000125670.3 |
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| 3UTR-3UTR CCA 90 bp | CACATATGTGAGGTCCTGAAGGGCCCTCTTAGACTGGTGGCTGCCCCTTTAGAGAAGAGAACAGGAGTTTaGGGGAAGCTCCAGCCTGGA | + |
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Preference number: 2 (lower is better) Translates to: HICEVLKGPLRLVAAPLEKRTGV*GKLQPG Trigger: TCCAGGCTGGAGCTTCCCCCAAACTCCTGTTCTCTT...CTCTAAAGGGGCAGCCACCAGTCTAAGAGGGCCCTTCAGGACCTCACATATGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000125670.3 |
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| 3UTR-3UTR TCA 90 bp | ACAGGACCCCAACTAAACTGGTGGAGACTAGGGATGGGGGTGGGAGTCCCTGAGTTTAACAGTACCTCCTaGTGCTCATGTCCCCAAAAG | + |
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Preference number: 2 (lower is better) Translates to: TGPQLNWWRLGMGVGVPEFNSTS*CSCPQK Trigger: CTTTTGGGGACATGAGCATCAGGAGGTACTGTTAAA...CTCAGGGACTCCCACCCCCATCCCTAGTCTCCACCAGTTTAGTTGGGGTCCTGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000001130.8 ENSMUST00000125670.3 |
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| 3UTR-3UTR TCA 90 bp | AATGGGGCCCTGAACCTTGAAAATGTGGGTCCCAGCAGACCAGTACCCTGCCCCTTGCCCAGTGAAGTCTaGGGAACAATTTGCTCTAAA | + |
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Preference number: 2 (lower is better) Translates to: NGALNLENVGPSRPVPCPLPSEV*GTICSK Trigger: TTTAGAGCAAATTGTTCCTCAGACTTCACTGGGCAA...GGGGCAGGGTACTGGTCTGCTGGGACCCACATTTTCAAGGTTCAGGGCCCCATT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000125670.3 |
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| 3UTR-3UTR CCA 90 bp | TGTGAGGTCCTGAAGGGCCCTCTTAGACTGGTGGCTGCCCCTTTAGAGGAAGGAATTAATTTGTCCAGGTaGCAGGAAGTCAGGCAATGG | + |
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Preference number: 2 (lower is better) Translates to: CEVLKGPLRLVAAPLEEGINLSR*QEVRQW Trigger: CCATTGCCTGACTTCCTGCCACCTGGACAAATTAAT...TCCTTCCTCTAAAGGGGCAGCCACCAGTCTAAGAGGGCCCTTCAGGACCTCACA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000001130.8 ENSMUST00000125670.3 |
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| 3UTR-3UTR GCA 90 bp | ATAGGAGTTGGGGACCCAAACCTGTCAGTAAAGGTGGAAAATGTAGTCCCTCACCCAAAAGGACCAGGATaGCGAGTTTTAGGAGGCAGG | + |
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Preference number: 2 (lower is better) Translates to: IGVGDPNLSVKVENVVPHPKGPG*RVLGGR Trigger: CCTGCCTCCTAAAACTCGGCATCCTGGTCCTTTTGG...GTGAGGGACTACATTTTCCACCTTTACTGACAGGTTTGGGTCCCCAACTCCTAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000001130.8 ENSMUST00000125670.3 |
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| 3UTR-3UTR CCA 90 bp | CACTCTCTCTTCAGATCCACAGTTCTGATTAATTTGTCCAGGTGGCAGGAAGTCGTAGGGTGCAGAGGATaGCTTGATGTTCCAGGGTCC | + |
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Preference number: 2 (lower is better) Translates to: HSLFRSTVLINLSRWQEVVGCRG*LDVPGS Trigger: GGACCCTGGAACATCAAGCCATCCTCTGCACCCTAC...GACTTCCTGCCACCTGGACAAATTAATCAGAACTGTGGATCTGAAGAGAGAGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000125670.3 |
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| 3UTR-3UTR TCA 90 bp | CACTCTCTCTTCAGATCCACAGTTCTGATTAATTTGTCCAGGTGGCAGGAAGTCTATTACACATGCCAGTaGTACCACACACCCCACCCC | + |
|
Preference number: 2 (lower is better) Translates to: HSLFRSTVLINLSRWQEVYYTCQ*YHTPHP Trigger: GGGGTGGGGTGTGTGGTATCACTGGCATGTGTAATA...GACTTCCTGCCACCTGGACAAATTAATCAGAACTGTGGATCTGAAGAGAGAGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000001130.8 ENSMUST00000125670.3 |
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| 3UTR-3UTR GCA 90 bp | GCTGCCCCTTTAGAGGAAGGAGATCATTCTGCTAAGATAATAGGAGTTGGGGACAGGAGTTCTCTTATGTaGTCTGTCCTATGGGCTACA | + |
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Preference number: 2 (lower is better) Translates to: AAPLEEGDHSAKIIGVGDRSSLM*SVLWAT Trigger: TGTAGCCCATAGGACAGAGCACATAAGAGAACTCCT...GTCCCCAACTCCTATTATCTTAGCAGAATGATCTCCTTCCTCTAAAGGGGCAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000001130.8 ENSMUST00000125670.3 |
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| 3UTR-3UTR TCA 90 bp | CACTCTCTCTTCAGATCCACAGTTCTGATTAATTTGTCCAGGTGGCAGGAAGTCTTTAACAGTACCTCCTaGTGCTCATGTCCCCAAAAG | + |
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Preference number: 2 (lower is better) Translates to: HSLFRSTVLINLSRWQEVFNSTS*CSCPQK Trigger: CTTTTGGGGACATGAGCATCAGGAGGTACTGTTAAA...GACTTCCTGCCACCTGGACAAATTAATCAGAACTGTGGATCTGAAGAGAGAGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000001130.8 ENSMUST00000125670.3 |
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| 3UTR-3UTR GCA 90 bp | TCTGAGGAACAATTTGCTCTAAAGAAGAGTGAATCCCTGAAGCCCCACTTGTCCAGGAGTTCTCTTATGTaGTCTGTCCTATGGGCTACA | + |
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Preference number: 2 (lower is better) Translates to: SEEQFALKKSESLKPHLSRSSLM*SVLWAT Trigger: TGTAGCCCATAGGACAGAGCACATAAGAGAACTCCT...GGACAAGTGGGGCTTCAGGGATTCACTCTTCTTTAGAGCAAATTGTTCCTCAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000125670.3 |
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| 3UTR CCA 72 bp | AGGAGGCAGGCTCCAGTCACAGGACCCCAACTAAACTaGTGGAGACTAGGGATGGGGGTGGGAGTCCCTGAG | + |
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Preference number: 3 (lower is better) Translates to: RRQAPVTGPQLN*WRLGMGVGVPE Trigger: CTCAGGGACTCCCACCCCCATCCCTAGTCTCCACCAGTTTAGTTGGGGTCCTGTGACTGGAGCCTGCCTCCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000001130.8 ENSMUST00000125670.3 |
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| 3UTR-3UTR CAA 90 bp | TCTGCCCTGGACCCAAAATGGGGCCTAGGCAGGAGGTCTGTGGTGGGCATGCTGCCTGGCTTTCTGTCCTaGATTCTCTTGGCTCGCCGA | + |
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Preference number: 3 (lower is better) Translates to: SALDPKWGLGRRSVVGMLPGFLS*ILLARR Trigger: TCGGCGAGCCAAGAGAATCAAGGACAGAAAGCCAGG...CAGCATGCCCACCACAGACCTCCTGCCTAGGCCCCATTTTGGGTCCAGGGCAGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000125670.3 |
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| 3UTR TCA 72 bp | AGGTGGCAGGAAGTCAGGCAATGGGGCCCTGAACCTTaGAAATGTGGGTCCCAGCAGACCAGTACCCTGCCC | + |
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Preference number: 3 (lower is better) Translates to: RWQEVRQWGPEP*KCGSQQTSTLP Trigger: GGGCAGGGTACTGGTCTGCTGGGACCCACATTTTCAAGGTTCAGGGCCCCATTGCCTGACTTCCTGCCACCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000001130.8 ENSMUST00000125670.3 |
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| 3UTR CCA 72 bp | GAAAATGTGGGTCCCAGCAGACCAGTACCCTGCCCCTaGCACATATGTGAGGTCCTGAAGGGCCCTCTTAGA | + |
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Preference number: 3 (lower is better) Translates to: ENVGPSRPVPCP*HICEVLKGPLR Trigger: TCTAAGAGGGCCCTTCAGGACCTCACATATGTGCCAGGGGCAGGGTACTGGTCTGCTGGGACCCACATTTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000001130.8 ENSMUST00000125670.3 |
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| 3UTR TCA 72 bp | TTTGTCCAGGTGGCAGGAAGTCAGGCAATGGGGCCCTaGACCTTGAAAATGTGGGTCCCAGCAGACCAGTAC | + |
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Preference number: 3 (lower is better) Translates to: FVQVAGSQAMGP*TLKMWVPADQY Trigger: GTACTGGTCTGCTGGGACCCACATTTTCAAGGTTCAGGGCCCCATTGCCTGACTTCCTGCCACCTGGACAAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000001130.8 ENSMUST00000125670.3 |
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| 3UTR-3UTR CAA 90 bp | TCTCTCTTCAGATCCACAGTTCTGATTAATTTGTCCAGGTGGCAGGAAGTCAGGGAAGAGAACAGGAGTTaGGGGGAAGCTCCAGCCTGG | + |
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Preference number: 3 (lower is better) Translates to: SLFRSTVLINLSRWQEVREENRS*GEAPAW Trigger: CCAGGCTGGAGCTTCCCCCAAACTCCTGTTCTCTTC...CCTGACTTCCTGCCACCTGGACAAATTAATCAGAACTGTGGATCTGAAGAGAGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000125670.3 |
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| 3UTR-3UTR CAA 90 bp | TCTCTCTTCAGATCCACAGTTCTGATTAATTTGTCCAGGTGGCAGGAAGTCAGGGGTGCAGAGGATGGCTaGATGTTCCAGGGTCCCAAG | + |
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Preference number: 3 (lower is better) Translates to: SLFRSTVLINLSRWQEVRGAEDG*MFQGPK Trigger: CTTGGGACCCTGGAACATCAAGCCATCCTCTGCACC...CCTGACTTCCTGCCACCTGGACAAATTAATCAGAACTGTGGATCTGAAGAGAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000125670.3 |
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| 3UTR-3UTR CAA 90 bp | ATAGGAGTTGGGGACCCAAACCTGTCAGTAAAGGTGGAAAATGTAGTCCCTCACACAGTTCTGATTAATTaGTCCAGGTGGCAGGAAGTC | + |
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Preference number: 3 (lower is better) Translates to: IGVGDPNLSVKVENVVPHTVLIN*SRWQEV Trigger: GACTTCCTGCCACCTGGACAAATTAATCAGAACTGT...GTGAGGGACTACATTTTCCACCTTTACTGACAGGTTTGGGTCCCCAACTCCTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000001130.8 ENSMUST00000125670.3 |
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| 3UTR CCA 72 bp | AAAAGAGGCAGGAGTTCTCTTATGTGCTCTGTCCTATaGGCTACAAGGCCAGAGCCAAGACTTAAAAGCTCT | + |
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Preference number: 3 (lower is better) Translates to: KRGRSSLMCSVL*ATRPEPRLKSS Trigger: AGAGCTTTTAAGTCTTGGCTCTGGCCTTGTAGCCCATAGGACAGAGCACATAAGAGAACTCCTGCCTCTTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000001130.8 ENSMUST00000125670.3 |
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| 3UTR-3UTR CAA 90 bp | TTCAGATCCACAGTTCTGATTAATTTGTCCAGGTGGCAGGAAGTCAGGCAATGGACAGTTCTGATTAATTaGTCCAGGTGGCAGGAAGTC | + |
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Preference number: 3 (lower is better) Translates to: FRSTVLINLSRWQEVRQWTVLIN*SRWQEV Trigger: GACTTCCTGCCACCTGGACAAATTAATCAGAACTGT...CCATTGCCTGACTTCCTGCCACCTGGACAAATTAATCAGAACTGTGGATCTGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000001130.8 ENSMUST00000125670.3 |
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| CDS-3UTR CCA 90 bp | AATGGGGCCCTGAACCTTGAAAATGTGGGTCCCAGCAGACCAGTACCCTGCCCCGGGGACCCAACCCACTaGCACAGCCTGGAGATGCCT | + |
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Preference number: 4 (lower is better) Translates to: NGALNLENVGPSRPVPCPGDPTH*HSLEMP Trigger: AGGCATCTCCAGGCTGTGCCAGTGGGTTGGGTCCCC...GGGGCAGGGTACTGGTCTGCTGGGACCCACATTTTCAAGGTTCAGGGCCCCATT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000001130.8 |
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| CDS-3UTR TCA 90 bp | ACAGGACCCCAACTAAACTGGTGGAGACTAGGGATGGGGGTGGGAGTCCCTGAGCCAACTGCCCGACACTaGAAGTGGTCCTCTTCCTCC | + |
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Preference number: 4 (lower is better) Translates to: TGPQLNWWRLGMGVGVPEPTARH*KWSSSS Trigger: GGAGGAAGAGGACCACTTTCAGTGTCGGGCAGTTGG...CTCAGGGACTCCCACCCCCATCCCTAGTCTCCACCAGTTTAGTTGGGGTCCTGT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000001130.8 ENSMUST00000125670.3 |
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| CDS-3UTR TCA 90 bp | AATGGGGCCCTGAACCTTGAAAATGTGGGTCCCAGCAGACCAGTACCCTGCCCCGTGCAGAGGATGGCTTaGTGTTCCAGGGTCCCAAGG | + |
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Preference number: 4 (lower is better) Translates to: NGALNLENVGPSRPVPCPVQRMA*CSRVPR Trigger: CCTTGGGACCCTGGAACATCAAGCCATCCTCTGCAC...GGGGCAGGGTACTGGTCTGCTGGGACCCACATTTTCAAGGTTCAGGGCCCCATT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000001130.8 |
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| CDS-3UTR CCA 90 bp | CCCAAAAGGACCAGGATGCCGAGTTTTAGGAGGCAGGCTCCAGTCACAGGACCCCACAGCCAGGTCACCTaGAGATGCCTCCACAGGACT | + |
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Preference number: 4 (lower is better) Translates to: PKRTRMPSFRRQAPVTGPHSQVT*RCLHRT Trigger: AGTCCTGTGGAGGCATCTCCAGGTGACCTGGCTGTG...GGGTCCTGTGACTGGAGCCTGCCTCCTAAAACTCGGCATCCTGGTCCTTTTGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000125670.3 |
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| CDS-3UTR TCA 90 bp | GGCAGGAAGTCAGGCAATGGGGCCCTGAACCTTGAAAATGTGGGTCCCAGCAGACCAACTGCCCGACACTaGAAGTGGTCCTCTTCCTCC | + |
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Preference number: 4 (lower is better) Translates to: GRKSGNGALNLENVGPSRPTARH*KWSSSS Trigger: GGAGGAAGAGGACCACTTTCAGTGTCGGGCAGTTGG...TCTGCTGGGACCCACATTTTCAAGGTTCAGGGCCCCATTGCCTGACTTCCTGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000001130.8 ENSMUST00000125670.3 |
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| CDS-3UTR CCA 90 bp | CCAAAAGGACCAGGATGCCGAGTTTTAGGAGGCAGGCTCCAGTCACAGGACCCCGTAGGGTGCAGAGGATaGCTTGATGTTCCAGGGTCC | + |
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Preference number: 4 (lower is better) Translates to: PKGPGCRVLGGRLQSQDPVGCRG*LDVPGS Trigger: GGACCCTGGAACATCAAGCCATCCTCTGCACCCTAC...GGGGTCCTGTGACTGGAGCCTGCCTCCTAAAACTCGGCATCCTGGTCCTTTTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000001130.8 |
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| CDS-3UTR GCA 90 bp | GGCAGGAAGTCAGGCAATGGGGCCCTGAACCTTGAAAATGTGGGTCCCAGCAGATCCAGCTCCACCAACTaGCCGACACTGAAAGTGGTC | + |
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Preference number: 4 (lower is better) Translates to: GRKSGNGALNLENVGPSRSSSTN*PTLKVV Trigger: GACCACTTTCAGTGTCGGGCAGTTGGTGGAGCTGGA...TCTGCTGGGACCCACATTTTCAAGGTTCAGGGCCCCATTGCCTGACTTCCTGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000001130.8 ENSMUST00000125670.3 |
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| CDS-3UTR GCA 90 bp | TGTGAGGTCCTGAAGGGCCCTCTTAGACTGGTGGCTGCCCCTTTAGAGGAAGGATCCAGCTCCACCAACTaGCCGACACTGAAAGTGGTC | + |
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Preference number: 4 (lower is better) Translates to: CEVLKGPLRLVAAPLEEGSSSTN*PTLKVV Trigger: GACCACTTTCAGTGTCGGGCAGTTGGTGGAGCTGGA...TCCTTCCTCTAAAGGGGCAGCCACCAGTCTAAGAGGGCCCTTCAGGACCTCACA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000001130.8 ENSMUST00000125670.3 |
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| CDS-3UTR CCA 90 bp | GGCAGGAAGTCAGGCAATGGGGCCCTGAACCTTGAAAATGTGGGTCCCAGCAGAGGGTCCCAAGGTAGCTaGGGAGTGTCTGGAAGAGAA | + |
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Preference number: 4 (lower is better) Translates to: GRKSGNGALNLENVGPSRGSQGS*GVSGRE Trigger: TTCTCTTCCAGACACTCCCCAGCTACCTTGGGACCC...TCTGCTGGGACCCACATTTTCAAGGTTCAGGGCCCCATTGCCTGACTTCCTGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001130.8 |
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| CDS-3UTR TCA 90 bp | CCCAAAAGGACCAGGATGCCGAGTTTTAGGAGGCAGGCTCCAGTCACAGGACCCCATGCTGAAGTATACTaGGCTGAACTGGTAGGGTGC | + |
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Preference number: 4 (lower is better) Translates to: PKRTRMPSFRRQAPVTGPHAEVY*AELVGC Trigger: GCACCCTACCAGTTCAGCTCAGTATACTTCAGCATG...GGGTCCTGTGACTGGAGCCTGCCTCCTAAAACTCGGCATCCTGGTCCTTTTGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000001130.8 |
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| CDS-3UTR CCA 90 bp | GGCAGGAAGTCAGGCAATGGGGCCCTGAACCTTGAAAATGTGGGTCCCAGCAGAAAGAGAACAGGAGTTTaGGGGAAGCTCCAGCCTGGA | + |
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Preference number: 4 (lower is better) Translates to: GRKSGNGALNLENVGPSRKRTGV*GKLQPG Trigger: TCCAGGCTGGAGCTTCCCCCAAACTCCTGTTCTCTT...TCTGCTGGGACCCACATTTTCAAGGTTCAGGGCCCCATTGCCTGACTTCCTGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000001130.8 |
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| CDS-3UTR CCA 90 bp | TCCCTCACTTTAACAGTACCTCCTGATGCTCATGTCCCCAAAAGGACCAGGATGCCCACTGGCACAGCCTaGAGATGCCTCCACAGGACT | + |
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Preference number: 4 (lower is better) Translates to: SLTLTVPPDAHVPKRTRMPTGTA*RCLHRT Trigger: AGTCCTGTGGAGGCATCTCCAGGCTGTGCCAGTGGG...CATCCTGGTCCTTTTGGGGACATGAGCATCAGGAGGTACTGTTAAAGTGAGGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001130.8 |
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| CDS-3UTR TCA 90 bp | ATAGGAGTTGGGGACCCAAACCTGTCAGTAAAGGTGGAAAATGTAGTCCCTCACTGCCACTTTAGCCCCTaGCCAACTCTGCCCTGGACC | + |
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Preference number: 4 (lower is better) Translates to: IGVGDPNLSVKVENVVPHCHFSP*PTLPWT Trigger: GGTCCAGGGCAGAGTTGGTCAGGGGCTAAAGTGGCA...GTGAGGGACTACATTTTCCACCTTTACTGACAGGTTTGGGTCCCCAACTCCTAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000001130.8 |
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| CDS-3UTR GCA 90 bp | TTCAGATCCACAGTTCTGATTAATTTGTCCAGGTGGCAGGAAGTCAGGCAATGGGCCCCTGACCAACTCTaGCCTGGACCCAAAATGGGG | + |
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Preference number: 4 (lower is better) Translates to: FRSTVLINLSRWQEVRQWAPDQL*PGPKMG Trigger: CCCCATTTTGGGTCCAGGGCAGAGTTGGTCAGGGGC...CCATTGCCTGACTTCCTGCCACCTGGACAAATTAATCAGAACTGTGGATCTGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001130.8 |
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| CDS-3UTR CCA 90 bp | GCCCCTTTAGAGGAAGGAGATCATTCTGCTAAGATAATAGGAGTTGGGGACCCATTCTGGAACCACACCTaGATCTTGGCTTCAGGCAGG | + |
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Preference number: 4 (lower is better) Translates to: APLEEGDHSAKIIGVGDPFWNHT*ILASGR Trigger: CCTGCCTGAAGCCAAGATCCAGGTGTGGTTCCAGAA...TGGGTCCCCAACTCCTATTATCTTAGCAGAATGATCTCCTTCCTCTAAAGGGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001130.8 |
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| CDS-3UTR TCA 90 bp | CCTTTAGAGGAAGGAGATCATTCTGCTAAGATAATAGGAGTTGGGGACCCAAACCTGGCTTTCTGTCCTTaGTTCTCTTGGCTCGCCGAT | + |
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Preference number: 4 (lower is better) Translates to: PLEEGDHSAKIIGVGDPNLAFCP*FSWLAD Trigger: ATCGGCGAGCCAAGAGAATCAAGGACAGAAAGCCAG...GTTTGGGTCCCCAACTCCTATTATCTTAGCAGAATGATCTCCTTCCTCTAAAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001130.8 |
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| CDS-3UTR TCA 90 bp | CCTTTAGAGGAAGGAGATCATTCTGCTAAGATAATAGGAGTTGGGGACCCAAACTGCTCTAAAGAAGAGTaGATCCCTGAAGCCCCACTT | + |
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Preference number: 4 (lower is better) Translates to: PLEEGDHSAKIIGVGDPNCSKEE*IPEAPL Trigger: AAGTGGGGCTTCAGGGATTCACTCTTCTTTAGAGCA...GTTTGGGTCCCCAACTCCTATTATCTTAGCAGAATGATCTCCTTCCTCTAAAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001130.8 |
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| CDS-3UTR TCA 90 bp | GCTGCCCCTTTAGAGGAAGGAGATCATTCTGCTAAGATAATAGGAGTTGGGGACTTGCCCAGTGAAGTCTaGGGAACAATTTGCTCTAAA | + |
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Preference number: 4 (lower is better) Translates to: AAPLEEGDHSAKIIGVGDLPSEV*GTICSK Trigger: TTTAGAGCAAATTGTTCCTCAGACTTCACTGGGCAA...GTCCCCAACTCCTATTATCTTAGCAGAATGATCTCCTTCCTCTAAAGGGGCAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001130.8 |
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| CDS GCA 90 bp | CTGAGCCAGGTGCTCACGGGTGCTGATGTCAGGATAGGGCCTAGCTaGAAATACCCGCTCCAGCTCCACCAACTGCCCGACACTGAAAGT | + |
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Preference number: 5 (lower is better) Translates to: LSQVLTGADVRIGPS*KYPLQLHQLPDTES Trigger: ACTTTCAGTGTCGGGCAGTTGGTGGAGCTGGAGCGGGTATTTGCAGCTAGGCCCTATCCTGACATCAGCACCCGTGAGCACCTGGCTCAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000001130.8 ENSMUST00000125670.3 |
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| CDS-3UTR CAA 90 bp | CCCAAAAGGACCAGGATGCCGAGTTTTAGGAGGCAGGCTCCAGTCACAGGACCCGGTGCAGAGGATGGCTaGATGTTCCAGGGTCCCAAG | + |
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Preference number: 5 (lower is better) Translates to: PKRTRMPSFRRQAPVTGPGAEDG*MFQGPK Trigger: CTTGGGACCCTGGAACATCAAGCCATCCTCTGCACC...GGGTCCTGTGACTGGAGCCTGCCTCCTAAAACTCGGCATCCTGGTCCTTTTGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001130.8 |
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| CDS-3UTR CAA 90 bp | CACATATGTGAGGTCCTGAAGGGCCCTCTTAGACTGGTGGCTGCCCCTTTAGAGCCTGGCTTTCTGTCCTaGATTCTCTTGGCTCGCCGA | + |
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Preference number: 5 (lower is better) Translates to: HICEVLKGPLRLVAAPLEPGFLS*ILLARR Trigger: TCGGCGAGCCAAGAGAATCAAGGACAGAAAGCCAGG...CTCTAAAGGGGCAGCCACCAGTCTAAGAGGGCCCTTCAGGACCTCACATATGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001130.8 |
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| CDS-3UTR CAA 90 bp | TTCAGATCCACAGTTCTGATTAATTTGTCCAGGTGGCAGGAAGTCAGGCAATGGGAAGAGAACAGGAGTTaGGGGGAAGCTCCAGCCTGG | + |
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Preference number: 5 (lower is better) Translates to: FRSTVLINLSRWQEVRQWEENRS*GEAPAW Trigger: CCAGGCTGGAGCTTCCCCCAAACTCCTGTTCTCTTC...CCATTGCCTGACTTCCTGCCACCTGGACAAATTAATCAGAACTGTGGATCTGAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001130.8 |
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| CDS CCA 72 bp | AAGTGGTCCTCTTCCTCCGATGGGGACCCAACCCACTaGCACAGCCTGGAGATGCCTCCACAGGACTGGCCA | + |
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Preference number: 6 (lower is better) Translates to: KWSSSSDGDPTH*HSLEMPPQDWP Trigger: TGGCCAGTCCTGTGGAGGCATCTCCAGGCTGTGCCAGTGGGTTGGGTCCCCATCGGAGGAAGAGGACCACTT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001130.8 |
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| CDS GCA 72 bp | GTGCTCACGGGTGCTGATGTCAGGATAGGGCCTAGCTaGAAATACCCGCTCCAGCTCCACCAACTGCCCGAC | + |
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Preference number: 6 (lower is better) Translates to: VLTGADVRIGPS*KYPLQLHQLPD Trigger: GTCGGGCAGTTGGTGGAGCTGGAGCGGGTATTTGCAGCTAGGCCCTATCCTGACATCAGCACCCGTGAGCAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000001130.8 ENSMUST00000125670.3 |
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| CDS CCA 72 bp | AACTGCCCGACACTGAAAGTGGTCCTCTTCCTCCGATaGGGACCCAACCCACTGGCACAGCCAGGTCACCTG | + |
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Preference number: 6 (lower is better) Translates to: NCPTLKVVLFLR*GPNPLAQPGHL Trigger: CAGGTGACCTGGCTGTGCCAGTGGGTTGGGTCCCCATCGGAGGAAGAGGACCACTTTCAGTGTCGGGCAGTT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000125670.3 |
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| CDS TCA 72 bp | CAAATACCCGCTCCAGCTCCACCAACTGCCCGACACTaGAAGTGGTCCTCTTCCTCCGATGGGGACCCAACC | + |
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Preference number: 6 (lower is better) Translates to: QIPAPAPPTARH*KWSSSSDGDPT Trigger: GGTTGGGTCCCCATCGGAGGAAGAGGACCACTTTCAGTGTCGGGCAGTTGGTGGAGCTGGAGCGGGTATTTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000001130.8 ENSMUST00000125670.3 |
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| CDS GCA 72 bp | GGCCTAGCTGCAAATACCCGCTCCAGCTCCACCAACTaGCCGACACTGAAAGTGGTCCTCTTCCTCCGATGG | + |
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Preference number: 6 (lower is better) Translates to: GLAANTRSSSTN*PTLKVVLFLRW Trigger: CCATCGGAGGAAGAGGACCACTTTCAGTGTCGGGCAGTTGGTGGAGCTGGAGCGGGTATTTGCAGCTAGGCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000001130.8 ENSMUST00000125670.3 |
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