Pregenerated sensors for SDR39U1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022223Ensembl transcript IDs: ENSMUST00000111325.5, ENSMUST00000226273.2, ENSMUST00000227032.2, ENSMUST00000227211.2, ENSMUST00000227387.2
Found 92 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CGATGGGGCCTCCTAGGCCCAGGCGGAAGGGCAGAAGCATGTGACTaGTGGCGCCACCTCCACGGCCCAGCACAACCCCTGAACGTACCA | + |
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Preference number: 1 (lower is better) Translates to: RWGLLGPGGRAEACD*WRHLHGPAQPLNVP Trigger: TGGTACGTTCAGGGGTTGTGCTGGGCCGTGGAGGTGGCGCCATCAGTCACATGCTTCTGCCCTTCCGCCTGGGCCTAGGAGGCCCCATCG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000227032.2 |
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| 3UTR TCA 90 bp | GAACCGATGGGGCCTCCTAGGCCCAGGCGGAAGGGCAGAAGCATGTaGCTGATGGCGCCACCTCCACGGCCCAGCACAACCCCTGAACGT | + |
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Preference number: 1 (lower is better) Translates to: EPMGPPRPRRKGRSM*LMAPPPRPSTTPER Trigger: ACGTTCAGGGGTTGTGCTGGGCCGTGGAGGTGGCGCCATCAGTCACATGCTTCTGCCCTTCCGCCTGGGCCTAGGAGGCCCCATCGGTTC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000227032.2 |
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| 3UTR CCA 90 bp | TTCAGAATTCCTGCCAGGTCACCAATGTGTATCCAGGGGAAGAATTaGCGACCTGAACCGATGGGGCCTCCTAGGCCCAGGCGGAAGGGC | + |
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Preference number: 1 (lower is better) Translates to: FRIPARSPMCIQGKN*RPEPMGPPRPRRKG Trigger: GCCCTTCCGCCTGGGCCTAGGAGGCCCCATCGGTTCAGGTCGCCAATTCTTCCCCTGGATACACATTGGTGACCTGGCAGGAATTCTGAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000227032.2 |
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| 3UTR GCA 90 bp | GGCAGCACCCAAGGCCTGGGCAAACTCAGCATTGGTAGTTGTAGATaGTGGAGCCACTCCATTCAGGACTCCTTGGACGTGGTTTGCTTC | + |
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Preference number: 1 (lower is better) Translates to: GSTQGLGKLSIGSCR*WSHSIQDSLDVVCF Trigger: GAAGCAAACCACGTCCAAGGAGTCCTGAATGGAGTGGCTCCAGCATCTACAACTACCAATGCTGAGTTTGCCCAGGCCTTGGGTGCTGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227032.2 |
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| 3UTR CCA 90 bp | AGCACCCAAGGCCTGGGCAAACTCAGCATTGGTAGTTGTAGATGCTaGAGCCACTCCATTCAGGACTCCTTGGACGTGGTTTGCTTCAAG | + |
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Preference number: 1 (lower is better) Translates to: STQGLGKLSIGSCRC*SHSIQDSLDVVCFK Trigger: CTTGAAGCAAACCACGTCCAAGGAGTCCTGAATGGAGTGGCTCCAGCATCTACAACTACCAATGCTGAGTTTGCCCAGGCCTTGGGTGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227032.2 |
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| 3UTR GCA 90 bp | TGTAGATGCTGGAGCCACTCCATTCAGGACTCCTTGGACGTGGTTTaGTTCAAGGGCATAGTTCAGAATTCCTGCCAGGTCACCAATGTG | + |
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Preference number: 1 (lower is better) Translates to: CRCWSHSIQDSLDVV*FKGIVQNSCQVTNV Trigger: CACATTGGTGACCTGGCAGGAATTCTGAACTATGCCCTTGAAGCAAACCACGTCCAAGGAGTCCTGAATGGAGTGGCTCCAGCATCTACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227032.2 |
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| 3UTR-3UTR TCA 90 bp | GCACGTTCTCCAAAGACCGCTCGTACCACAGTGCTGGGGACAGGTATGAAGGCTGCCCAGCACAACCCCTaGACGTACCACGACCTGGCG | + |
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Preference number: 2 (lower is better) Translates to: ARSPKTARTTVLGTGMKAAQHNP*TYHDLA Trigger: CGCCAGGTCGTGGTACGTTCAGGGGTTGTGCTGGGC...AGCCTTCATACCTGTCCCCAGCACTGTGGTACGAGCGGTCTTTGGAGAACGTGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000227032.2 |
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| 3UTR-3UTR CCA 90 bp | CCCTTCCAACAGCATGATGGCACGTTCTCCAAAGACCGCTCGTACCACAGTGCTGACAGGTATGAAGGCTaGGCGGCCCAGGGCAGCACC | + |
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Preference number: 2 (lower is better) Translates to: PFQQHDGTFSKDRSYHSADRYEG*AAQGST Trigger: GGTGCTGCCCTGGGCCGCCCAGCCTTCATACCTGTC...AGCACTGTGGTACGAGCGGTCTTTGGAGAACGTGCCATCATGCTGTTGGAAGGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227032.2 |
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| 3UTR CAA 90 bp | GGAGTACTGGTAGCCAGTAGCCAGTGTCCGCCGAGGGACCACTTTTaGCCCTTCCAACAGCATGATGGCACGTTCTCCAAAGACCGCTCG | + |
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Preference number: 2 (lower is better) Translates to: GVLVASSQCPPRDHF*PFQQHDGTFSKDRS Trigger: CGAGCGGTCTTTGGAGAACGTGCCATCATGCTGTTGGAAGGGCAAAAAGTGGTCCCTCGGCGGACACTGGCTACTGGCTACCAGTACTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227032.2 |
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| 3UTR-3UTR CCA 90 bp | CCCTTCCAACAGCATGATGGCACGTTCTCCAAAGACCGCTCGTACCACAGTGCTACTCTCCAGGAAGCCTaGCTGCTGCTTCCCATTTGG | + |
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Preference number: 2 (lower is better) Translates to: PFQQHDGTFSKDRSYHSATLQEA*LLLPIW Trigger: CCAAATGGGAAGCAGCAGCCAGGCTTCCTGGAGAGT...AGCACTGTGGTACGAGCGGTCTTTGGAGAACGTGCCATCATGCTGTTGGAAGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227032.2 |
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| 3UTR-3UTR CCA 90 bp | GGGGCTCCTTCTCTGCTCAGGCTACAACATCCTTCAAGGCAGCCCTCAGCTCTGCCATTCAGGACTCCTTaGACGTGGTTTGCTTCAAGG | + |
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Preference number: 2 (lower is better) Translates to: GAPSLLRLQHPSRQPSALPFRTP*TWFASR Trigger: CCTTGAAGCAAACCACGTCCAAGGAGTCCTGAATGG...CAGAGCTGAGGGCTGCCTTGAAGGATGTTGTAGCCTGAGCAGAGAAGGAGCCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227032.2 |
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| 3UTR-3UTR GCA 90 bp | CCCTTCCAACAGCATGATGGCACGTTCTCCAAAGACCGCTCGTACCACAGTGCTAGGAAGCCTGGCTGCTaGTTCCCATTTGGTTACCAG | + |
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Preference number: 2 (lower is better) Translates to: PFQQHDGTFSKDRSYHSARKPGC*FPFGYQ Trigger: CTGGTAACCAAATGGGAAGCAGCAGCCAGGCTTCCT...AGCACTGTGGTACGAGCGGTCTTTGGAGAACGTGCCATCATGCTGTTGGAAGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227032.2 |
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| 3UTR-3UTR GCA 90 bp | TTGGTTACCAGGTTGGAGAAAAAGTCAAAATTCCCTCCTGGGCTGTCTTCATCAGCAGGCCCCAGCTTCTaGCTTGGGGCTCCTTCTCTG | + |
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Preference number: 2 (lower is better) Translates to: LVTRLEKKSKFPPGLSSSAGPSF*LGAPSL Trigger: CAGAGAAGGAGCCCCAAGGCAGAAGCTGGGGCCTGC...TGATGAAGACAGCCCAGGAGGGAATTTTGACTTTTTCTCCAACCTGGTAACCAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000227032.2 |
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| 3UTR-3UTR GCA 90 bp | TGCCCTTCCAACAGCATGATGGCACGTTCTCCAAAGACCGCTCGTACCACAGTGTCCTTGGACGTGGTTTaGTTCAAGGGCATAGTTCAG | + |
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Preference number: 2 (lower is better) Translates to: CPSNSMMARSPKTARTTVSLDVV*FKGIVQ Trigger: CTGAACTATGCCCTTGAAGCAAACCACGTCCAAGGA...CACTGTGGTACGAGCGGTCTTTGGAGAACGTGCCATCATGCTGTTGGAAGGGCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227032.2 |
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| 3UTR-3UTR CCA 90 bp | CCCTTCCAACAGCATGATGGCACGTTCTCCAAAGACCGCTCGTACCACAGTGCTGTCAAAATTCCCTCCTaGGCTGTCTTCATCATACTC | + |
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Preference number: 2 (lower is better) Translates to: PFQQHDGTFSKDRSYHSAVKIPS*AVFIIL Trigger: GAGTATGATGAAGACAGCCCAGGAGGGAATTTTGAC...AGCACTGTGGTACGAGCGGTCTTTGGAGAACGTGCCATCATGCTGTTGGAAGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227032.2 |
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| 3UTR CAA 90 bp | AGCATTGGTAGTTGTAGATGCTGGAGCCACTCCATTCAGGACTCCTaGGACGTGGTTTGCTTCAAGGGCATAGTTCAGAATTCCTGCCAG | + |
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Preference number: 2 (lower is better) Translates to: SIGSCRCWSHSIQDS*DVVCFKGIVQNSCQ Trigger: CTGGCAGGAATTCTGAACTATGCCCTTGAAGCAAACCACGTCCAAGGAGTCCTGAATGGAGTGGCTCCAGCATCTACAACTACCAATGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227032.2 |
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| 3UTR-3UTR GCA 90 bp | ACTGTAGAACATTGTCTACACAGCATATATGAGAACCAGGGCAACAATGTAACAGCAGGCCCCAGCTTCTaGCTTGGGGCTCCTTCTCTG | + |
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Preference number: 2 (lower is better) Translates to: TVEHCLHSIYENQGNNVTAGPSF*LGAPSL Trigger: CAGAGAAGGAGCCCCAAGGCAGAAGCTGGGGCCTGC...TGTTACATTGTTGCCCTGGTTCTCATATATGCTGTGTAGACAATGTTCTACAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111325.5 |
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| 3UTR-3UTR CCA 90 bp | TTGGTTACCAGGTTGGAGAAAAAGTCAAAATTCCCTCCTGGGCTGTCTTCATCAAATCCAAGCCTGAGGTaGGTGCGCAGTTTCGGTGAT | + |
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Preference number: 2 (lower is better) Translates to: LVTRLEKKSKFPPGLSSSNPSLR*VRSFGD Trigger: ATCACCGAAACTGCGCACCCACCTCAGGCTTGGATT...TGATGAAGACAGCCCAGGAGGGAATTTTGACTTTTTCTCCAACCTGGTAACCAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000226273.2 |
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| 3UTR-3UTR CCA 90 bp | AGCGATGTAATCTATCTTTATTGCCATAACTGTAGAACATTGTCTACACAGCATGTGGATCAACGAACATaGGAAGAGAGTGGGGTGAGG | + |
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Preference number: 2 (lower is better) Translates to: SDVIYLYCHNCRTLSTQHVDQRT*EESGVR Trigger: CCTCACCCCACTCTCTTCCCATGTTCGTTGATCCAC...ATGCTGTGTAGACAATGTTCTACAGTTATGGCAATAAAGATAGATTACATCGCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111325.5 |
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| 3UTR TCA 72 bp | CTCCTAGGCCCAGGCGGAAGGGCAGAAGCATGTGACTaGTGGCGCCACCTCCACGGCCCAGCACAACCCCTG | + |
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Preference number: 3 (lower is better) Translates to: LLGPGGRAEACD*WRHLHGPAQPL Trigger: CAGGGGTTGTGCTGGGCCGTGGAGGTGGCGCCATCAGTCACATGCTTCTGCCCTTCCGCCTGGGCCTAGGAG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227032.2 |
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| 3UTR CCA 72 bp | CCACGGCCCAGCACAACCCCTGAACGTACCACGACCTaGCGTGTAGACTCTCCAGGAAGCCTGGCTGCTGCT | + |
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Preference number: 3 (lower is better) Translates to: PRPSTTPERTTT*RVDSPGSLAAA Trigger: AGCAGCAGCCAGGCTTCCTGGAGAGTCTACACGCCAGGTCGTGGTACGTTCAGGGGTTGTGCTGGGCCGTGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227032.2 |
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| 3UTR GCA 72 bp | GAGCAGGCCCCAGCTTCTGCCTTGGGGCTCCTTCTCTaGTCAGGCTACAACATCCTTCAAGGCAGCCCTCAG | + |
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Preference number: 3 (lower is better) Translates to: EQAPASALGLLL*SGYNILQGSPQ Trigger: CTGAGGGCTGCCTTGAAGGATGTTGTAGCCTGAGCAGAGAAGGAGCCCCAAGGCAGAAGCTGGGGCCTGCTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000227032.2 |
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| 3UTR CCA 72 bp | TGTGTATCCAGGGGAAGAATTGGCGACCTGAACCGATaGGGCCTCCTAGGCCCAGGCGGAAGGGCAGAAGCA | + |
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Preference number: 3 (lower is better) Translates to: CVSRGRIGDLNR*GLLGPGGRAEA Trigger: TGCTTCTGCCCTTCCGCCTGGGCCTAGGAGGCCCCATCGGTTCAGGTCGCCAATTCTTCCCCTGGATACACA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227032.2 |
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| 3UTR CCA 72 bp | CCTGCCAGGTCACCAATGTGTATCCAGGGGAAGAATTaGCGACCTGAACCGATGGGGCCTCCTAGGCCCAGG | + |
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Preference number: 3 (lower is better) Translates to: PARSPMCIQGKN*RPEPMGPPRPR Trigger: CCTGGGCCTAGGAGGCCCCATCGGTTCAGGTCGCCAATTCTTCCCCTGGATACACATTGGTGACCTGGCAGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000227032.2 |
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| 3UTR GCA 72 bp | CAAGGCCTGGGCAAACTCAGCATTGGTAGTTGTAGATaGTGGAGCCACTCCATTCAGGACTCCTTGGACGTG | + |
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Preference number: 3 (lower is better) Translates to: QGLGKLSIGSCR*WSHSIQDSLDV Trigger: CACGTCCAAGGAGTCCTGAATGGAGTGGCTCCAGCATCTACAACTACCAATGCTGAGTTTGCCCAGGCCTTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227032.2 |
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| 3UTR CCA 72 bp | GGCCTGGGCAAACTCAGCATTGGTAGTTGTAGATGCTaGAGCCACTCCATTCAGGACTCCTTGGACGTGGTT | + |
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Preference number: 3 (lower is better) Translates to: GLGKLSIGSCRC*SHSIQDSLDVV Trigger: AACCACGTCCAAGGAGTCCTGAATGGAGTGGCTCCAGCATCTACAACTACCAATGCTGAGTTTGCCCAGGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227032.2 |
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| 3UTR-3UTR CAA 90 bp | AACAGCATGATGGCACGTTCTCCAAAGACCGCTCGTACCACAGTGCTGGGGACACTCCTTGGACGTGGTTaGCTTCAAGGGCATAGTTCA | + |
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Preference number: 3 (lower is better) Translates to: NSMMARSPKTARTTVLGTLLGRG*LQGHSS Trigger: TGAACTATGCCCTTGAAGCAAACCACGTCCAAGGAG...TGTCCCCAGCACTGTGGTACGAGCGGTCTTTGGAGAACGTGCCATCATGCTGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227032.2 |
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| CDS-3UTR GCA 90 bp | AGTAGCCAGTGTCCGCCGAGGGACCACTTTTTGCCCTTCCAACAGCATGATGGCTGGCGGTCCCTGGCCTaGTGGGCCCTTTGTAGTGCA | + |
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Preference number: 4 (lower is better) Translates to: SSQCPPRDHFLPFQQHDGWRSLA*WALCSA Trigger: TGCACTACAAAGGGCCCAGCAGGCCAGGGACCGCCA...GCCATCATGCTGTTGGAAGGGCAAAAAGTGGTCCCTCGGCGGACACTGGCTACT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000227032.2 |
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| CDS-3UTR CCA 90 bp | CCTCCACGGCCCAGCACAACCCCTGAACGTACCACGACCTGGCGTGTAGACTCTAATCCAAGCCTGAGGTaGGTGCGCAGTTTCGGTGAT | + |
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Preference number: 4 (lower is better) Translates to: PPRPSTTPERTTTWRVDSNPSLR*VRSFGD Trigger: ATCACCGAAACTGCGCACCCACCTCAGGCTTGGATT...AGAGTCTACACGCCAGGTCGTGGTACGTTCAGGGGTTGTGCTGGGCCGTGGAGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227032.2 |
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| CDS-3UTR TCA 90 bp | GACCTGGCGTGTAGACTCTCCAGGAAGCCTGGCTGCTGCTTCCCATTTGGTTACTTACGGCTGTCCCAATaGATCCCGTCCCGCCACCTA | + |
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Preference number: 4 (lower is better) Translates to: DLACRLSRKPGCCFPFGYLRLSQ*IPSRHL Trigger: TAGGTGGCGGGACGGGATTCATTGGGACAGCCGTAA...GTAACCAAATGGGAAGCAGCAGCCAGGCTTCCTGGAGAGTCTACACGCCAGGTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227032.2 |
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| CDS-3UTR CCA 90 bp | GCATTGGTAGTTGTAGATGCTGGAGCCACTCCATTCAGGACTCCTTGGACGTGGTGCTCTGGCGGTCCCTaGCCTGCTGGGCCCTTTGTA | + |
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Preference number: 4 (lower is better) Translates to: ALVVVDAGATPFRTPWTWCSGGP*PAGPFV Trigger: TACAAAGGGCCCAGCAGGCCAGGGACCGCCAGAGCA...CCACGTCCAAGGAGTCCTGAATGGAGTGGCTCCAGCATCTACAACTACCAATGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227032.2 |
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| 3UTR CAA 72 bp | CCCAGGGCAGCACCCAAGGCCTGGGCAAACTCAGCATaGGTAGTTGTAGATGCTGGAGCCACTCCATTCAGG | + |
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Preference number: 4 (lower is better) Translates to: PRAAPKAWANSA*VVVDAGATPFR Trigger: CCTGAATGGAGTGGCTCCAGCATCTACAACTACCAATGCTGAGTTTGCCCAGGCCTTGGGTGCTGCCCTGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227032.2 |
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| CDS-3UTR TCA 90 bp | GCACGTTCTCCAAAGACCGCTCGTACCACAGTGCTGGGGACAGGTATGAAGGCTACTAGAATCCAAGCCTaGGGTGGGTGCGCAGTTTCG | + |
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Preference number: 4 (lower is better) Translates to: ARSPKTARTTVLGTGMKATRIQA*GGCAVS Trigger: CGAAACTGCGCACCCACCTCAGGCTTGGATTCTAGT...AGCCTTCATACCTGTCCCCAGCACTGTGGTACGAGCGGTCTTTGGAGAACGTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227032.2 |
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| 3UTR CAA 72 bp | GTAGCCAGTAGCCAGTGTCCGCCGAGGGACCACTTTTaGCCCTTCCAACAGCATGATGGCACGTTCTCCAAA | + |
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Preference number: 4 (lower is better) Translates to: VASSQCPPRDHF*PFQQHDGTFSK Trigger: TTTGGAGAACGTGCCATCATGCTGTTGGAAGGGCAAAAAGTGGTCCCTCGGCGGACACTGGCTACTGGCTAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227032.2 |
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| CDS-3UTR CCA 90 bp | TCAGCATTGGTAGTTGTAGATGCTGGAGCCACTCCATTCAGGACTCCTTGGACGCTGCCTCTCAGCAGCTaGGTTACGGCTGTCCCAATG | + |
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Preference number: 4 (lower is better) Translates to: SALVVVDAGATPFRTPWTLPLSS*VTAVPM Trigger: CATTGGGACAGCCGTAACCCAGCTGCTGAGAGGCAG...CGTCCAAGGAGTCCTGAATGGAGTGGCTCCAGCATCTACAACTACCAATGCTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227032.2 |
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| 3UTR CAA 72 bp | CTGGAGCCACTCCATTCAGGACTCCTTGGACGTGGTTaGCTTCAAGGGCATAGTTCAGAATTCCTGCCAGGT | + |
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Preference number: 4 (lower is better) Translates to: LEPLHSGLLGRG*LQGHSSEFLPG Trigger: ACCTGGCAGGAATTCTGAACTATGCCCTTGAAGCAAACCACGTCCAAGGAGTCCTGAATGGAGTGGCTCCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227032.2 |
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| CDS-3UTR TCA 90 bp | AAGACCCTGATGGATTCTGATCTCAATCAAGTGCAGGGATCATCACCTGACCCATTACGGCTGTCCCAATaGATCCCGTCCCGCCACCTA | + |
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Preference number: 4 (lower is better) Translates to: KTLMDSDLNQVQGSSPDPLRLSQ*IPSRHL Trigger: TAGGTGGCGGGACGGGATTCATTGGGACAGCCGTAA...TGGGTCAGGTGATGATCCCTGCACTTGATTGAGATCAGAATCCATCAGGGTCTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111325.5 |
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| CDS-3UTR CCA 90 bp | CTGATGGATTCTGATCTCAATCAAGTGCAGGGATCATCACCTGACCCACTTCTCCTGCCTCTCAGCAGCTaGGTTACGGCTGTCCCAATG | + |
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Preference number: 4 (lower is better) Translates to: LMDSDLNQVQGSSPDPLLLPLSS*VTAVPM Trigger: CATTGGGACAGCCGTAACCCAGCTGCTGAGAGGCAG...GAGAAGTGGGTCAGGTGATGATCCCTGCACTTGATTGAGATCAGAATCCATCAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111325.5 |
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| CDS-3UTR CCA 90 bp | GGCAGCCCTCAGCTCTGGGAAGGAGTACTGGTAGCCAGTAGCCAGTGTCCGCCGGTAAGAACCTCTTTTTaGAAGGTTTCATTCCATCTT | + |
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Preference number: 4 (lower is better) Translates to: GSPQLWEGVLVASSQCPPVRTSF*KVSFHL Trigger: AAGATGGAATGAAACCTTCCAAAAAGAGGTTCTTAC...CGGCGGACACTGGCTACTGGCTACCAGTACTCCTTCCCAGAGCTGAGGGCTGCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000227032.2 |
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| CDS-3UTR TCA 90 bp | GGTTACCAGGTTGGAGAAAAAGTCAAAATTCCCTCCTGGGCTGTCTTCATCATATTACGGCTGTCCCAATaGATCCCGTCCCGCCACCTA | + |
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Preference number: 4 (lower is better) Translates to: GYQVGEKVKIPSWAVFIILRLSQ*IPSRHL Trigger: TAGGTGGCGGGACGGGATTCATTGGGACAGCCGTAA...TATGATGAAGACAGCCCAGGAGGGAATTTTGACTTTTTCTCCAACCTGGTAACC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000226273.2 ENSMUST00000227032.2 |
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| CDS-3UTR CCA 90 bp | TTGGTTACCAGGTTGGAGAAAAAGTCAAAATTCCCTCCTGGGCTGTCTTCATCACTGCCTCTCAGCAGCTaGGTTACGGCTGTCCCAATG | + |
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Preference number: 4 (lower is better) Translates to: LVTRLEKKSKFPPGLSSSLPLSS*VTAVPM Trigger: CATTGGGACAGCCGTAACCCAGCTGCTGAGAGGCAG...TGATGAAGACAGCCCAGGAGGGAATTTTGACTTTTTCTCCAACCTGGTAACCAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000226273.2 ENSMUST00000227032.2 |
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| CDS-3UTR CCA 90 bp | CTGATGGATTCTGATCTCAATCAAGTGCAGGGATCATCACCTGACCCACTTCTCAATCCAAGCCTGAGGTaGGTGCGCAGTTTCGGTGAT | + |
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Preference number: 4 (lower is better) Translates to: LMDSDLNQVQGSSPDPLLNPSLR*VRSFGD Trigger: ATCACCGAAACTGCGCACCCACCTCAGGCTTGGATT...GAGAAGTGGGTCAGGTGATGATCCCTGCACTTGATTGAGATCAGAATCCATCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111325.5 |
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| CDS-3UTR TCA 90 bp | ATAACTGTAGAACATTGTCTACACAGCATATATGAGAACCAGGGCAACAATGTAGCCCAGCACAACCCCTaGACGTACCACGACCTGGCG | + |
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Preference number: 4 (lower is better) Translates to: ITVEHCLHSIYENQGNNVAQHNP*TYHDLA Trigger: CGCCAGGTCGTGGTACGTTCAGGGGTTGTGCTGGGC...TACATTGTTGCCCTGGTTCTCATATATGCTGTGTAGACAATGTTCTACAGTTAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111325.5 |
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| CDS-3UTR CCA 90 bp | ATAACTGTAGAACATTGTCTACACAGCATATATGAGAACCAGGGCAACAATGTAGACAGGTATGAAGGCTaGGCGGCCCAGGGCAGCACC | + |
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Preference number: 4 (lower is better) Translates to: ITVEHCLHSIYENQGNNVDRYEG*AAQGST Trigger: GGTGCTGCCCTGGGCCGCCCAGCCTTCATACCTGTC...TACATTGTTGCCCTGGTTCTCATATATGCTGTGTAGACAATGTTCTACAGTTAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111325.5 |
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| CDS-3UTR GCA 90 bp | CTGATGGATTCTGATCTCAATCAAGTGCAGGGATCATCACCTGACCCACTTCTCTCCTTGGACGTGGTTTaGTTCAAGGGCATAGTTCAG | + |
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Preference number: 4 (lower is better) Translates to: LMDSDLNQVQGSSPDPLLSLDVV*FKGIVQ Trigger: CTGAACTATGCCCTTGAAGCAAACCACGTCCAAGGA...GAGAAGTGGGTCAGGTGATGATCCCTGCACTTGATTGAGATCAGAATCCATCAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111325.5 |
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| CDS-3UTR CCA 90 bp | GGTTACCAGGTTGGAGAAAAAGTCAAAATTCCCTCCTGGGCTGTCTTCATCATAACCAATTTAACTTCGTaGCCCCTGCCTCTCAGCAGC | + |
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Preference number: 4 (lower is better) Translates to: GYQVGEKVKIPSWAVFIITNLTS*PLPLSS Trigger: GCTGCTGAGAGGCAGGGGCCACGAAGTTAAATTGGT...TATGATGAAGACAGCCCAGGAGGGAATTTTGACTTTTTCTCCAACCTGGTAACC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000226273.2 ENSMUST00000227032.2 |
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| CDS-3UTR TCA 90 bp | GTAGAACATTGTCTACACAGCATATATGAGAACCAGGGCAACAATGTAACACAGACTAGAATCCAAGCCTaGGGTGGGTGCGCAGTTTCG | + |
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Preference number: 4 (lower is better) Translates to: VEHCLHSIYENQGNNVTQTRIQA*GGCAVS Trigger: CGAAACTGCGCACCCACCTCAGGCTTGGATTCTAGT...CTGTGTTACATTGTTGCCCTGGTTCTCATATATGCTGTGTAGACAATGTTCTAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111325.5 ENSMUST00000227211.2 |
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| CDS-3UTR CCA 90 bp | CTGATGGATTCTGATCTCAATCAAGTGCAGGGATCATCACCTGACCCACTTCTCGTCAAAATTCCCTCCTaGGCTGTCTTCATCATACTC | + |
|
Preference number: 4 (lower is better) Translates to: LMDSDLNQVQGSSPDPLLVKIPS*AVFIIL Trigger: GAGTATGATGAAGACAGCCCAGGAGGGAATTTTGAC...GAGAAGTGGGTCAGGTGATGATCCCTGCACTTGATTGAGATCAGAATCCATCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111325.5 |
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| CDS-3UTR CCA 90 bp | GTAGAACATTGTCTACACAGCATATATGAGAACCAGGGCAACAATGTAACACAGACTCTCCAGGAAGCCTaGCTGCTGCTTCCCATTTGG | + |
|
Preference number: 4 (lower is better) Translates to: VEHCLHSIYENQGNNVTQTLQEA*LLLPIW Trigger: CCAAATGGGAAGCAGCAGCCAGGCTTCCTGGAGAGT...CTGTGTTACATTGTTGCCCTGGTTCTCATATATGCTGTGTAGACAATGTTCTAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111325.5 ENSMUST00000227211.2 |
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| CDS-3UTR GCA 90 bp | GTAGAACATTGTCTACACAGCATATATGAGAACCAGGGCAACAATGTAACACAGAGGAAGCCTGGCTGCTaGTTCCCATTTGGTTACCAG | + |
|
Preference number: 4 (lower is better) Translates to: VEHCLHSIYENQGNNVTQRKPGC*FPFGYQ Trigger: CTGGTAACCAAATGGGAAGCAGCAGCCAGGCTTCCT...CTGTGTTACATTGTTGCCCTGGTTCTCATATATGCTGTGTAGACAATGTTCTAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111325.5 ENSMUST00000227211.2 |
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| CDS-3UTR CCA 90 bp | ACTGTAGAACATTGTCTACACAGCATATATGAGAACCAGGGCAACAATGTAACAATCCAGGGGAAGAATTaGCGACCTGAACCGATGGGG | + |
|
Preference number: 4 (lower is better) Translates to: TVEHCLHSIYENQGNNVTIQGKN*RPEPMG Trigger: CCCCATCGGTTCAGGTCGCCAATTCTTCCCCTGGAT...TGTTACATTGTTGCCCTGGTTCTCATATATGCTGTGTAGACAATGTTCTACAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111325.5 |
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| CDS-3UTR CCA 90 bp | GTAGAACATTGTCTACACAGCATATATGAGAACCAGGGCAACAATGTAACACAGGGTAGTTGTAGATGCTaGAGCCACTCCATTCAGGAC | + |
|
Preference number: 4 (lower is better) Translates to: VEHCLHSIYENQGNNVTQGSCRC*SHSIQD Trigger: GTCCTGAATGGAGTGGCTCCAGCATCTACAACTACC...CTGTGTTACATTGTTGCCCTGGTTCTCATATATGCTGTGTAGACAATGTTCTAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111325.5 |
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| CDS-3UTR CCA 90 bp | AGCGATGTAATCTATCTTTATTGCCATAACTGTAGAACATTGTCTACACAGCATACTCTCCAGGAAGCCTaGCTGCTGCTTCCCATTTGG | + |
|
Preference number: 4 (lower is better) Translates to: SDVIYLYCHNCRTLSTQHTLQEA*LLLPIW Trigger: CCAAATGGGAAGCAGCAGCCAGGCTTCCTGGAGAGT...ATGCTGTGTAGACAATGTTCTACAGTTATGGCAATAAAGATAGATTACATCGCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111325.5 ENSMUST00000227211.2 |
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| CDS-3UTR CCA 90 bp | ACTGTAGAACATTGTCTACACAGCATATATGAGAACCAGGGCAACAATGTAACACCATTCAGGACTCCTTaGACGTGGTTTGCTTCAAGG | + |
|
Preference number: 4 (lower is better) Translates to: TVEHCLHSIYENQGNNVTPFRTP*TWFASR Trigger: CCTTGAAGCAAACCACGTCCAAGGAGTCCTGAATGG...TGTTACATTGTTGCCCTGGTTCTCATATATGCTGTGTAGACAATGTTCTACAGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111325.5 |
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| CDS-3UTR CCA 90 bp | AGCGATGTAATCTATCTTTATTGCCATAACTGTAGAACATTGTCTACACAGCATGCAGCACCCAAGGCCTaGGCAAACTCAGCATTGGTA | + |
|
Preference number: 4 (lower is better) Translates to: SDVIYLYCHNCRTLSTQHAAPKA*ANSALV Trigger: TACCAATGCTGAGTTTGCCCAGGCCTTGGGTGCTGC...ATGCTGTGTAGACAATGTTCTACAGTTATGGCAATAAAGATAGATTACATCGCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111325.5 |
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| CDS-3UTR GCA 90 bp | ATCTTTATTGCCATAACTGTAGAACATTGTCTACACAGCATATATGAGAACCAGAGGAAGCCTGGCTGCTaGTTCCCATTTGGTTACCAG | + |
|
Preference number: 4 (lower is better) Translates to: IFIAITVEHCLHSIYENQRKPGC*FPFGYQ Trigger: CTGGTAACCAAATGGGAAGCAGCAGCCAGGCTTCCT...CTGGTTCTCATATATGCTGTGTAGACAATGTTCTACAGTTATGGCAATAAAGAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111325.5 ENSMUST00000227211.2 |
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| CDS-3UTR GCA 90 bp | GTAGAACATTGTCTACACAGCATATATGAGAACCAGGGCAACAATGTAACACAGATTGGTAGTTGTAGATaGTGGAGCCACTCCATTCAG | + |
|
Preference number: 4 (lower is better) Translates to: VEHCLHSIYENQGNNVTQIGSCR*WSHSIQ Trigger: CTGAATGGAGTGGCTCCAGCATCTACAACTACCAAT...CTGTGTTACATTGTTGCCCTGGTTCTCATATATGCTGTGTAGACAATGTTCTAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111325.5 |
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| CDS-3UTR CCA 90 bp | AGCGATGTAATCTATCTTTATTGCCATAACTGTAGAACATTGTCTACACAGCATACCAATTTAACTTCGTaGCCCCTGCCTCTCAGCAGC | + |
|
Preference number: 4 (lower is better) Translates to: SDVIYLYCHNCRTLSTQHTNLTS*PLPLSS Trigger: GCTGCTGAGAGGCAGGGGCCACGAAGTTAAATTGGT...ATGCTGTGTAGACAATGTTCTACAGTTATGGCAATAAAGATAGATTACATCGCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111325.5 |
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| CDS-3UTR CCA 90 bp | CTGATGGATTCTGATCTCAATCAAGTGCAGGGATCATCACCTGACCCACTTCTCGTAAGAACCTCTTTTTaGAAGGTTTCATTCCATCTT | + |
|
Preference number: 4 (lower is better) Translates to: LMDSDLNQVQGSSPDPLLVRTSF*KVSFHL Trigger: AAGATGGAATGAAACCTTCCAAAAAGAGGTTCTTAC...GAGAAGTGGGTCAGGTGATGATCCCTGCACTTGATTGAGATCAGAATCCATCAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000111325.5 |
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| CDS-3UTR CCA 90 bp | AGCGATGTAATCTATCTTTATTGCCATAACTGTAGAACATTGTCTACACAGCATAATCCAAGCCTGAGGTaGGTGCGCAGTTTCGGTGAT | + |
|
Preference number: 4 (lower is better) Translates to: SDVIYLYCHNCRTLSTQHNPSLR*VRSFGD Trigger: ATCACCGAAACTGCGCACCCACCTCAGGCTTGGATT...ATGCTGTGTAGACAATGTTCTACAGTTATGGCAATAAAGATAGATTACATCGCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111325.5 ENSMUST00000227211.2 |
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| CDS-3UTR CCA 90 bp | GTAGAACATTGTCTACACAGCATATATGAGAACCAGGGCAACAATGTAACACAGGTCAAAATTCCCTCCTaGGCTGTCTTCATCATACTC | + |
|
Preference number: 4 (lower is better) Translates to: VEHCLHSIYENQGNNVTQVKIPS*AVFIIL Trigger: GAGTATGATGAAGACAGCCCAGGAGGGAATTTTGAC...CTGTGTTACATTGTTGCCCTGGTTCTCATATATGCTGTGTAGACAATGTTCTAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111325.5 ENSMUST00000227211.2 |
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| CDS-3UTR CCA 90 bp | ACTGTAGAACATTGTCTACACAGCATATATGAGAACCAGGGCAACAATGTAACAGTAAGAACCTCTTTTTaGAAGGTTTCATTCCATCTT | + |
|
Preference number: 4 (lower is better) Translates to: TVEHCLHSIYENQGNNVTVRTSF*KVSFHL Trigger: AAGATGGAATGAAACCTTCCAAAAAGAGGTTCTTAC...TGTTACATTGTTGCCCTGGTTCTCATATATGCTGTGTAGACAATGTTCTACAGT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000111325.5 ENSMUST00000227211.2 |
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| CDS TCA 90 bp | GAACCGATGGGGCCTCCTAGGCCCAGGCGGAAGGGCAGAAGCATGTaGCTGATGGCGCCACCTCCACGGCCCAGCACAACCCCTACACCT | + |
|
Preference number: 5 (lower is better) Translates to: EPMGPPRPRRKGRSM*LMAPPPRPSTTPTP Trigger: AGGTGTAGGGGTTGTGCTGGGCCGTGGAGGTGGCGCCATCAGTCACATGCTTCTGCCCTTCCGCCTGGGCCTAGGAGGCCCCATCGGTTC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000227387.2 |
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| CDS-3UTR CAA 90 bp | GGCTCCTTCTCTGCTCAGGCTACAACATCCTTCAAGGCAGCCCTCAGCTCTGGGTGGAAGAGCGTTTGTTaGCTCTGGCGGTCCCTGGCC | + |
|
Preference number: 5 (lower is better) Translates to: GSFSAQATTSFKAALSSGWKSVC*LWRSLA Trigger: GGCCAGGGACCGCCAGAGCAAACAAACGCTCTTCCA...CCCAGAGCTGAGGGCTGCCTTGAAGGATGTTGTAGCCTGAGCAGAGAAGGAGCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227032.2 |
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| CDS TCA 90 bp | CCACGGCCCAGCACAACCCCTACACCTGTGACTAGAATCCAAGCCTaGGGTGGGTGCGCAGTTTCGGTGATGGCTTTGGCTAGCAAGTGG | + |
|
Preference number: 5 (lower is better) Translates to: PRPSTTPTPVTRIQA*GGCAVSVMALASKW Trigger: CCACTTGCTAGCCAAAGCCATCACCGAAACTGCGCACCCACCTCAGGCTTGGATTCTAGTCACAGGTGTAGGGGTTGTGCTGGGCCGTGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227387.2 |
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| CDS CCA 90 bp | CTGTCATGGAAGAGCGTTTGTTTGCTCTGGCGGTCCCTGGCCTGCTaGGCCCTTTGTAGTGCAAGGCTCCTTAGCCTCAGTCTCCTCTGC | + |
|
Preference number: 5 (lower is better) Translates to: LSWKSVCLLWRSLAC*ALCSARLLSLSLLC Trigger: GCAGAGGAGACTGAGGCTAAGGAGCCTTGCACTACAAAGGGCCCAGCAGGCCAGGGACCGCCAGAGCAAACAAACGCTCTTCCATGACAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227032.2 |
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| CDS GCA 90 bp | AAGCTGTCATGGAAGAGCGTTTGTTTGCTCTGGCGGTCCCTGGCCTaGTGGGCCCTTTGTAGTGCAAGGCTCCTTAGCCTCAGTCTCCTC | + |
|
Preference number: 5 (lower is better) Translates to: KLSWKSVCLLWRSLA*WALCSARLLSLSLL Trigger: GAGGAGACTGAGGCTAAGGAGCCTTGCACTACAAAGGGCCCAGCAGGCCAGGGACCGCCAGAGCAAACAAACGCTCTTCCATGACAGCTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227032.2 |
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| CDS GCA 90 bp | AGTCAGGCTTGGCTGGTAGTAAGCTGTCATGGAAGAGCGTTTGTTTaGTCTGGCGGTCCCTGGCCTGCTGGGCCCTTTGTAGTGCAAGGC | + |
|
Preference number: 5 (lower is better) Translates to: SQAWLVVSCHGRAFV*SGGPWPAGPFVVQG Trigger: GCCTTGCACTACAAAGGGCCCAGCAGGCCAGGGACCGCCAGAGCAAACAAACGCTCTTCCATGACAGCTTACTACCAGCCAAGCCTGACT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227032.2 |
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| CDS CCA 90 bp | TGTCTGGAGACCAATTTAACTTCGTGGCCCCTGCCTCTCAGCAGCTaGGTTACGGCTGTCCCAATGAATCCCGTCCCGCCACCTACAAGC | + |
|
Preference number: 5 (lower is better) Translates to: CLETNLTSWPLPLSS*VTAVPMNPVPPPTS Trigger: GCTTGTAGGTGGCGGGACGGGATTCATTGGGACAGCCGTAACCCAGCTGCTGAGAGGCAGGGGCCACGAAGTTAAATTGGTCTCCAGACA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000111325.5 ENSMUST00000226273.2 ENSMUST00000227032.2 |
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| CDS CCA 90 bp | GTGATTCGACCCGGGCCAGGCTGTCTGGAGACCAATTTAACTTCGTaGCCCCTGCCTCTCAGCAGCTGGGTTACGGCTGTCCCAATGAAT | + |
|
Preference number: 5 (lower is better) Translates to: VIRPGPGCLETNLTS*PLPLSSWVTAVPMN Trigger: ATTCATTGGGACAGCCGTAACCCAGCTGCTGAGAGGCAGGGGCCACGAAGTTAAATTGGTCTCCAGACAGCCTGGCCCGGGTCGAATCAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000111325.5 ENSMUST00000226273.2 ENSMUST00000227032.2 ENSMUST00000227387.2 |
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| CDS CCA 90 bp | GGCTTGGCTGGTAGTAAGCTGTCATGGAAGAGCGTTTGTTTGCTCTaGCGGTCCCTGGCCTGCTGGGCCCTTTGTAGTGCAAGGCTCCTT | + |
|
Preference number: 5 (lower is better) Translates to: GLAGSKLSWKSVCLL*RSLACWALCSARLL Trigger: AAGGAGCCTTGCACTACAAAGGGCCCAGCAGGCCAGGGACCGCCAGAGCAAACAAACGCTCTTCCATGACAGCTTACTACCAGCCAAGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227032.2 |
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| CDS CCA 90 bp | GTAGTAAGCTGTCATGGAAGAGCGTTTGTTTGCTCTGGCGGTCCCTaGCCTGCTGGGCCCTTTGTAGTGCAAGGCTCCTTAGCCTCAGTC | + |
|
Preference number: 5 (lower is better) Translates to: VVSCHGRAFVCSGGP*PAGPFVVQGSLASV Trigger: GACTGAGGCTAAGGAGCCTTGCACTACAAAGGGCCCAGCAGGCCAGGGACCGCCAGAGCAAACAAACGCTCTTCCATGACAGCTTACTAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227032.2 |
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| CDS-3UTR CAA 90 bp | CTTGGACGTGGTTTGCTTCAAGGGCATAGTTCAGAATTCCTGCCAGGTCACCAATTCTCTCCAGCCAGGTaGATGACAACATCGCAGAGG | + |
|
Preference number: 5 (lower is better) Translates to: LGRGLLQGHSSEFLPGHQFSPAR*MTTSQR Trigger: CCTCTGCGATGTTGTCATCAACCTGGCTGGAGAGAA...TTGGTGACCTGGCAGGAATTCTGAACTATGCCCTTGAAGCAAACCACGTCCAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227032.2 |
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| CDS-3UTR CAA 90 bp | GTAGAACATTGTCTACACAGCATATATGAGAACCAGGGCAACAATGTAACACAGTTCTCTCCAGCCAGGTaGATGACAACATCGCAGAGG | + |
|
Preference number: 5 (lower is better) Translates to: VEHCLHSIYENQGNNVTQFSPAR*MTTSQR Trigger: CCTCTGCGATGTTGTCATCAACCTGGCTGGAGAGAA...CTGTGTTACATTGTTGCCCTGGTTCTCATATATGCTGTGTAGACAATGTTCTAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111325.5 ENSMUST00000227211.2 |
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| CDS-3UTR CAA 90 bp | GTAGAACATTGTCTACACAGCATATATGAGAACCAGGGCAACAATGTAACACAGCTCCTTGGACGTGGTTaGCTTCAAGGGCATAGTTCA | + |
|
Preference number: 5 (lower is better) Translates to: VEHCLHSIYENQGNNVTQLLGRG*LQGHSS Trigger: TGAACTATGCCCTTGAAGCAAACCACGTCCAAGGAG...CTGTGTTACATTGTTGCCCTGGTTCTCATATATGCTGTGTAGACAATGTTCTAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111325.5 |
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| CDS-3UTR CAA 90 bp | TTGGTTACCAGGTTGGAGAAAAAGTCAAAATTCCCTCCTGGGCTGTCTTCATCAGAAGGTTTCATTCCATaGAGTTCACTCCACGTGATT | + |
|
Preference number: 5 (lower is better) Translates to: LVTRLEKKSKFPPGLSSSEGFIP*SSLHVI Trigger: AATCACGTGGAGTGAACTCAATGGAATGAAACCTTC...TGATGAAGACAGCCCAGGAGGGAATTTTGACTTTTTCTCCAACCTGGTAACCAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000226273.2 |
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| CDS-3UTR CAA 90 bp | AGCGATGTAATCTATCTTTATTGCCATAACTGTAGAACATTGTCTACACAGCATTTCTCTCCAGCCAGGTaGATGACAACATCGCAGAGG | + |
|
Preference number: 5 (lower is better) Translates to: SDVIYLYCHNCRTLSTQHFSPAR*MTTSQR Trigger: CCTCTGCGATGTTGTCATCAACCTGGCTGGAGAGAA...ATGCTGTGTAGACAATGTTCTACAGTTATGGCAATAAAGATAGATTACATCGCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111325.5 ENSMUST00000227211.2 |
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| CDS-3UTR CAA 90 bp | AGCGATGTAATCTATCTTTATTGCCATAACTGTAGAACATTGTCTACACAGCATCCGAGGGACCACTTTTaGCCCTTCCAACAGCATGAT | + |
|
Preference number: 5 (lower is better) Translates to: SDVIYLYCHNCRTLSTQHPRDHF*PFQQHD Trigger: ATCATGCTGTTGGAAGGGCAAAAAGTGGTCCCTCGG...ATGCTGTGTAGACAATGTTCTACAGTTATGGCAATAAAGATAGATTACATCGCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111325.5 |
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| CDS TCA 72 bp | CTCCTAGGCCCAGGCGGAAGGGCAGAAGCATGTGACTaGTGGCGCCACCTCCACGGCCCAGCACAACCCCTA | + |
|
Preference number: 6 (lower is better) Translates to: LLGPGGRAEACD*WRHLHGPAQPL Trigger: TAGGGGTTGTGCTGGGCCGTGGAGGTGGCGCCATCAGTCACATGCTTCTGCCCTTCCGCCTGGGCCTAGGAG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227387.2 |
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| CDS TCA 72 bp | CGCCACCTCCACGGCCCAGCACAACCCCTACACCTGTaGCTAGAATCCAAGCCTGAGGTGGGTGCGCAGTTT | + |
|
Preference number: 6 (lower is better) Translates to: RHLHGPAQPLHL*LESKPEVGAQF Trigger: AAACTGCGCACCCACCTCAGGCTTGGATTCTAGTCACAGGTGTAGGGGTTGTGCTGGGCCGTGGAGGTGGCG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227387.2 |
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| CDS GCA 72 bp | TGGAAGAGCGTTTGTTTGCTCTGGCGGTCCCTGGCCTaGTGGGCCCTTTGTAGTGCAAGGCTCCTTAGCCTC | + |
|
Preference number: 6 (lower is better) Translates to: WKSVCLLWRSLA*WALCSARLLSL Trigger: GAGGCTAAGGAGCCTTGCACTACAAAGGGCCCAGCAGGCCAGGGACCGCCAGAGCAAACAAACGCTCTTCCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227032.2 |
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| CDS CCA 72 bp | ACCAATTTAACTTCGTGGCCCCTGCCTCTCAGCAGCTaGGTTACGGCTGTCCCAATGAATCCCGTCCCGCCA | + |
|
Preference number: 6 (lower is better) Translates to: TNLTSWPLPLSS*VTAVPMNPVPP Trigger: TGGCGGGACGGGATTCATTGGGACAGCCGTAACCCAGCTGCTGAGAGGCAGGGGCCACGAAGTTAAATTGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000111325.5 ENSMUST00000226273.2 ENSMUST00000227032.2 |
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| CDS CCA 72 bp | AAGAGCGTTTGTTTGCTCTGGCGGTCCCTGGCCTGCTaGGCCCTTTGTAGTGCAAGGCTCCTTAGCCTCAGT | + |
|
Preference number: 6 (lower is better) Translates to: KSVCLLWRSLAC*ALCSARLLSLS Trigger: ACTGAGGCTAAGGAGCCTTGCACTACAAAGGGCCCAGCAGGCCAGGGACCGCCAGAGCAAACAAACGCTCTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227032.2 |
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| CDS TCA 72 bp | CTCCTCTGCCCTACACCTGTGACTAGAATCCAAGCCTaGGGTGGGTGCGCAGTTTCGGTGATGGCTTTGGCT | + |
|
Preference number: 6 (lower is better) Translates to: LLCPTPVTRIQA*GGCAVSVMALA Trigger: AGCCAAAGCCATCACCGAAACTGCGCACCCACCTCAGGCTTGGATTCTAGTCACAGGTGTAGGGCAGAGGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227032.2 |
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| CDS TCA 72 bp | GGCTCCTTAGCCTCAGTCTCCTCTGCCCTACACCTGTaGCTAGAATCCAAGCCTGAGGTGGGTGCGCAGTTT | + |
|
Preference number: 6 (lower is better) Translates to: GSLASVSSALHL*LESKPEVGAQF Trigger: AAACTGCGCACCCACCTCAGGCTTGGATTCTAGTCACAGGTGTAGGGCAGAGGAGACTGAGGCTAAGGAGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227032.2 |
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| CDS CCA 72 bp | TGTCATGGAAGAGCGTTTGTTTGCTCTGGCGGTCCCTaGCCTGCTGGGCCCTTTGTAGTGCAAGGCTCCTTA | + |
|
Preference number: 6 (lower is better) Translates to: CHGRAFVCSGGP*PAGPFVVQGSL Trigger: TAAGGAGCCTTGCACTACAAAGGGCCCAGCAGGCCAGGGACCGCCAGAGCAAACAAACGCTCTTCCATGACA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227032.2 |
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| CDS TCA 72 bp | AGCACAACCCCTACACCTGTGACTAGAATCCAAGCCTaGGGTGGGTGCGCAGTTTCGGTGATGGCTTTGGCT | + |
|
Preference number: 6 (lower is better) Translates to: STTPTPVTRIQA*GGCAVSVMALA Trigger: AGCCAAAGCCATCACCGAAACTGCGCACCCACCTCAGGCTTGGATTCTAGTCACAGGTGTAGGGGTTGTGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227387.2 |
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| CDS CCA 72 bp | ATTCTTGAGGCTGGAGTTTCTGAACGTACCACGACCTaGCGTGTAGACTCTCCAGGAAGCCTGGCTGCTGCT | + |
|
Preference number: 6 (lower is better) Translates to: ILEAGVSERTTT*RVDSPGSLAAA Trigger: AGCAGCAGCCAGGCTTCCTGGAGAGTCTACACGCCAGGTCGTGGTACGTTCAGAAACTCCAGCCTCAAGAAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227211.2 |
||
| CDS CCA 72 bp | GGGTGCGCAGTTTCGGTGATGGCTTTGGCTAGCAAGTaGGTAGTATCCAAGCGGCTCGTAAGAACCTCTTTT | + |
|
Preference number: 6 (lower is better) Translates to: GCAVSVMALASK*VVSKRLVRTSF Trigger: AAAAGAGGTTCTTACGAGCCGCTTGGATACTACCCACTTGCTAGCCAAAGCCATCACCGAAACTGCGCACCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000111325.5 ENSMUST00000227032.2 ENSMUST00000227211.2 ENSMUST00000227387.2 |
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| CDS CCA 72 bp | TGGGTAGTATCCAAGCGGCTCGTAAGAACCTCTTTTTaGAAGGTTTCATTCCATCTTCGCAGAGGGTTGAGG | + |
|
Preference number: 6 (lower is better) Translates to: WVVSKRLVRTSF*KVSFHLRRGLR Trigger: CCTCAACCCTCTGCGAAGATGGAATGAAACCTTCCAAAAAGAGGTTCTTACGAGCCGCTTGGATACTACCCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000111325.5 ENSMUST00000227032.2 ENSMUST00000227211.2 ENSMUST00000227387.2 |
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| CDS CAA 90 bp | GTAAGAACCTCTTTTTGGAAGGTTTCATTCCATCTTCGCAGAGGGTaGAGGATATTCTCTCCAGCCAGGTTGATGACAACATCGCAGAGG | + |
|
Preference number: 6 (lower is better) Translates to: VRTSFWKVSFHLRRG*RIFSPARLMTTSQR Trigger: CCTCTGCGATGTTGTCATCAACCTGGCTGGAGAGAATATCCTCAACCCTCTGCGAAGATGGAATGAAACCTTCCAAAAAGAGGTTCTTAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000111325.5 ENSMUST00000227032.2 ENSMUST00000227211.2 ENSMUST00000227387.2 |
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| CDS CAA 72 bp | TCTTTTTGGAAGGTTTCATTCCATCTTCGCAGAGGGTaGAGGATATTCTCTCCAGCCAGGTTGATGACAACA | + |
|
Preference number: 6 (lower is better) Translates to: SFWKVSFHLRRG*RIFSPARLMTT Trigger: TGTTGTCATCAACCTGGCTGGAGAGAATATCCTCAACCCTCTGCGAAGATGGAATGAAACCTTCCAAAAAGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000111325.5 ENSMUST00000227032.2 ENSMUST00000227211.2 ENSMUST00000227387.2 |
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