Pregenerated sensors for SDR16C6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000071019Ensembl transcript IDs: ENSMUST00000095151.12, ENSMUST00000108383.2
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AACTGTCTCCTGAGAAGACAAACTGCAAAACTGCATATTTCCCAATaGCTGGATGACCCTAGGTTATGCTGGCATGCTGCAACCATTACA | + |
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Preference number: 1 (lower is better) Translates to: NCLLRRQTAKLHISQ*LDDPRLCWHAATIT Trigger: TGTAATGGTTGCAGCATGCCAGCATAACCTAGGGTCATCCAGGCATTGGGAAATATGCAGTTTTGCAGTTTGTCTTCTCAGGAGACAGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095151.12 ENSMUST00000108383.2 |
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| 3UTR TCA 90 bp | GAGAGAGAAGAGATAAAGAGAAAGAGTCATGTGCAAACTGTCTCCTaGGAAGACAAACTGCAAAACTGCATATTTCCCAATGCCTGGATG | + |
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Preference number: 1 (lower is better) Translates to: EREEIKRKSHVQTVS*EDKLQNCIFPNAWM Trigger: CATCCAGGCATTGGGAAATATGCAGTTTTGCAGTTTGTCTTCTCAGGAGACAGTTTGCACATGACTCTTTCTCTTTATCTCTTCTCTCTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095151.12 ENSMUST00000108383.2 |
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| 3UTR TCA 90 bp | GATAAATGCATTCAAATCCAGCCCTTAAAGACTGAGGCAGGATTATaGAAGGCCAGTCTAGACAGTATATTGAGACCCTTTTTGAGAGAG | + |
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Preference number: 1 (lower is better) Translates to: DKCIQIQPLKTEAGL*KASLDSILRPFLRE Trigger: CTCTCTCAAAAAGGGTCTCAATATACTGTCTAGACTGGCCTTTCATAATCCTGCCTCAGTCTTTAAGGGCTGGATTTGAATGCATTTATC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000095151.12 ENSMUST00000108383.2 |
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| 3UTR-3UTR TCA 90 bp | ATTTACAAGCCCGCAGAGTATAGAAAGGCTAAATTGCTTATTTTCCTTATGAAGGTGCAAACTGTCTCCTaGGAAGACAAACTGCAAAAC | + |
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Preference number: 2 (lower is better) Translates to: IYKPAEYRKAKLLIFLMKVQTVS*EDKLQN Trigger: GTTTTGCAGTTTGTCTTCTCAGGAGACAGTTTGCAC...CTTCATAAGGAAAATAAGCAATTTAGCCTTTCTATACTCTGCGGGCTTGTAAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000095151.12 ENSMUST00000108383.2 |
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| 3UTR CCA 72 bp | CATATTTCCCAATGCCTGGATGACCCTAGGTTATGCTaGCATGCTGCAACCATTACAGGGATTCCCAACAGT | + |
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Preference number: 3 (lower is better) Translates to: HISQCLDDPRLC*HAATITGIPNS Trigger: ACTGTTGGGAATCCCTGTAATGGTTGCAGCATGCCAGCATAACCTAGGGTCATCCAGGCATTGGGAAATATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095151.12 ENSMUST00000108383.2 |
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| 3UTR GCA 72 bp | CTGAGAAGACAAACTGCAAAACTGCATATTTCCCAATaGCTGGATGACCCTAGGTTATGCTGGCATGCTGCA | + |
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Preference number: 3 (lower is better) Translates to: LRRQTAKLHISQ*LDDPRLCWHAA Trigger: TGCAGCATGCCAGCATAACCTAGGGTCATCCAGGCATTGGGAAATATGCAGTTTTGCAGTTTGTCTTCTCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095151.12 ENSMUST00000108383.2 |
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| 3UTR TCA 72 bp | GAGATAAAGAGAAAGAGTCATGTGCAAACTGTCTCCTaGGAAGACAAACTGCAAAACTGCATATTTCCCAAT | + |
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Preference number: 3 (lower is better) Translates to: EIKRKSHVQTVS*EDKLQNCIFPN Trigger: ATTGGGAAATATGCAGTTTTGCAGTTTGTCTTCTCAGGAGACAGTTTGCACATGACTCTTTCTCTTTATCTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095151.12 ENSMUST00000108383.2 |
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| CDS-3UTR TCA 90 bp | CAAAACTGCATATTTCCCAATGCCTGGATGACCCTAGGTTATGCTGGCATGCTGGAGTCCTGCTATGCTTaGAATACAGACCAGGTGACC | + |
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Preference number: 4 (lower is better) Translates to: QNCIFPNAWMTLGYAGMLESCYA*NTDQVT Trigger: GGTCACCTGGTCTGTATTTCAAGCATAGCAGGACTC...CAGCATGCCAGCATAACCTAGGGTCATCCAGGCATTGGGAAATATGCAGTTTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095151.12 ENSMUST00000108383.2 |
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| CDS-3UTR TCA 90 bp | CAAAACTGCATATTTCCCAATGCCTGGATGACCCTAGGTTATGCTGGCATGCTGCGGAGTATTGAGGAATaGCTTTCCTGTCACAACACC | + |
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Preference number: 4 (lower is better) Translates to: QNCIFPNAWMTLGYAGMLRSIEE*LSCHNT Trigger: GGTGTTGTGACAGGAAAGTCATTCCTCAATACTCCG...CAGCATGCCAGCATAACCTAGGGTCATCCAGGCATTGGGAAATATGCAGTTTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095151.12 ENSMUST00000108383.2 |
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| CDS-3UTR TCA 90 bp | GCAAACTGTCTCCTGAGAAGACAAACTGCAAAACTGCATATTTCCCAATGCCTGGAGTCCTGCTATGCTTaGAATACAGACCAGGTGACC | + |
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Preference number: 4 (lower is better) Translates to: ANCLLRRQTAKLHISQCLESCYA*NTDQVT Trigger: GGTCACCTGGTCTGTATTTCAAGCATAGCAGGACTC...CAGGCATTGGGAAATATGCAGTTTTGCAGTTTGTCTTCTCAGGAGACAGTTTGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095151.12 ENSMUST00000108383.2 |
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| CDS-3UTR GCA 90 bp | CAAAACTGCATATTTCCCAATGCCTGGATGACCCTAGGTTATGCTGGCATGCTGAGACCTCTATCCTGCTaGTGCAATCACACTTATAGG | + |
|
Preference number: 4 (lower is better) Translates to: QNCIFPNAWMTLGYAGMLRPLSC*CNHTYR Trigger: CCTATAAGTGTGATTGCAGCAGCAGGATAGAGGTCT...CAGCATGCCAGCATAACCTAGGGTCATCCAGGCATTGGGAAATATGCAGTTTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095151.12 ENSMUST00000108383.2 |
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| CDS-3UTR GCA 90 bp | CAAAACTGCATATTTCCCAATGCCTGGATGACCCTAGGTTATGCTGGCATGCTGCAACGAGTCCTGCTATaGTTGAAATACAGACCAGGT | + |
|
Preference number: 4 (lower is better) Translates to: QNCIFPNAWMTLGYAGMLQRVLL*LKYRPG Trigger: ACCTGGTCTGTATTTCAAGCATAGCAGGACTCGTTG...CAGCATGCCAGCATAACCTAGGGTCATCCAGGCATTGGGAAATATGCAGTTTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095151.12 ENSMUST00000108383.2 |
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| CDS-3UTR GCA 90 bp | CAAAACTGCATATTTCCCAATGCCTGGATGACCCTAGGTTATGCTGGCATGCTGTGTAGACCTCTATCCTaGTGCTGCAATCACACTTAT | + |
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Preference number: 4 (lower is better) Translates to: QNCIFPNAWMTLGYAGMLCRPLS*CCNHTY Trigger: ATAAGTGTGATTGCAGCAGCAGGATAGAGGTCTACA...CAGCATGCCAGCATAACCTAGGGTCATCCAGGCATTGGGAAATATGCAGTTTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095151.12 ENSMUST00000108383.2 |
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| CDS-3UTR TCA 90 bp | CAAAACTGCATATTTCCCAATGCCTGGATGACCCTAGGTTATGCTGGCATGCTGTCCATATTGCCTTCTTaGTTAATGTCCCAGAGAACT | + |
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Preference number: 4 (lower is better) Translates to: QNCIFPNAWMTLGYAGMLSILPS*LMSQRT Trigger: AGTTCTCTGGGACATTAATCAAGAAGGCAATATGGA...CAGCATGCCAGCATAACCTAGGGTCATCCAGGCATTGGGAAATATGCAGTTTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095151.12 ENSMUST00000108383.2 |
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| CDS-3UTR TCA 90 bp | GCAAACTGTCTCCTGAGAAGACAAACTGCAAAACTGCATATTTCCCAATGCCTGGAAATACAGACCAGGTaGCCATGGTTAGCTTTAACC | + |
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Preference number: 4 (lower is better) Translates to: ANCLLRRQTAKLHISQCLEIQTR*PWLALT Trigger: GGTTAAAGCTAACCATGGTCACCTGGTCTGTATTTC...CAGGCATTGGGAAATATGCAGTTTTGCAGTTTGTCTTCTCAGGAGACAGTTTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095151.12 ENSMUST00000108383.2 |
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| CDS-3UTR TCA 90 bp | TGTGCAAACTGTCTCCTGAGAAGACAAACTGCAAAACTGCATATTTCCCAATGCGAAATACAGACCAGGTaGCCATGGTTAGCTTTAACC | + |
|
Preference number: 4 (lower is better) Translates to: CANCLLRRQTAKLHISQCEIQTR*PWLALT Trigger: GGTTAAAGCTAACCATGGTCACCTGGTCTGTATTTC...GCATTGGGAAATATGCAGTTTTGCAGTTTGTCTTCTCAGGAGACAGTTTGCACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095151.12 ENSMUST00000108383.2 |
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| CDS-3UTR GCA 90 bp | TGTGCAAACTGTCTCCTGAGAAGACAAACTGCAAAACTGCATATTTCCCAATGCAGACCTCTATCCTGCTaGTGCAATCACACTTATAGG | + |
|
Preference number: 4 (lower is better) Translates to: CANCLLRRQTAKLHISQCRPLSC*CNHTYR Trigger: CCTATAAGTGTGATTGCAGCAGCAGGATAGAGGTCT...GCATTGGGAAATATGCAGTTTTGCAGTTTGTCTTCTCAGGAGACAGTTTGCACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095151.12 ENSMUST00000108383.2 |
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| CDS-3UTR GCA 90 bp | GACAAACTGCAAAACTGCATATTTCCCAATGCCTGGATGACCCTAGGTTATGCTCTTTTTGTTTCCATCTaGAGCTCCTCTGCTTTGACT | + |
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Preference number: 4 (lower is better) Translates to: DKLQNCIFPNAWMTLGYALFVSI*SSSALT Trigger: AGTCAAAGCAGAGGAGCTGCAGATGGAAACAAAAAG...AGCATAACCTAGGGTCATCCAGGCATTGGGAAATATGCAGTTTTGCAGTTTGTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000095151.12 ENSMUST00000108383.2 |
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| CDS-3UTR TCA 90 bp | GCAAACTGTCTCCTGAGAAGACAAACTGCAAAACTGCATATTTCCCAATGCCTGGGCATTGACAAGAAATaGTTTTTCCACCAAGTGATC | + |
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Preference number: 4 (lower is better) Translates to: ANCLLRRQTAKLHISQCLGIDKK*FFHQVI Trigger: GATCACTTGGTGGAAAAATCATTTCTTGTCAATGCC...CAGGCATTGGGAAATATGCAGTTTTGCAGTTTGTCTTCTCAGGAGACAGTTTGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000095151.12 ENSMUST00000108383.2 |
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| CDS-3UTR TCA 90 bp | GCAAACTGTCTCCTGAGAAGACAAACTGCAAAACTGCATATTTCCCAATGCCTGTTACAAGTCCAGAAGTaGGAAATGGCATTGACAAGA | + |
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Preference number: 4 (lower is better) Translates to: ANCLLRRQTAKLHISQCLLQVQK*EMALTR Trigger: TCTTGTCAATGCCATTTCTCACTTCTGGACTTGTAA...CAGGCATTGGGAAATATGCAGTTTTGCAGTTTGTCTTCTCAGGAGACAGTTTGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095151.12 ENSMUST00000108383.2 |
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| CDS-3UTR GCA 90 bp | GTCATGTGCAAACTGTCTCCTGAGAAGACAAACTGCAAAACTGCATATTTCCCACTTTTTGTTTCCATCTaGAGCTCCTCTGCTTTGACT | + |
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Preference number: 4 (lower is better) Translates to: VMCKLSPEKTNCKTAYFPLFVSI*SSSALT Trigger: AGTCAAAGCAGAGGAGCTGCAGATGGAAACAAAAAG...TGGGAAATATGCAGTTTTGCAGTTTGTCTTCTCAGGAGACAGTTTGCACATGAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000095151.12 ENSMUST00000108383.2 |
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| CDS-3UTR TCA 90 bp | GTCATGTGCAAACTGTCTCCTGAGAAGACAAACTGCAAAACTGCATATTTCCCATTACAAGTCCAGAAGTaGGAAATGGCATTGACAAGA | + |
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Preference number: 4 (lower is better) Translates to: VMCKLSPEKTNCKTAYFPLQVQK*EMALTR Trigger: TCTTGTCAATGCCATTTCTCACTTCTGGACTTGTAA...TGGGAAATATGCAGTTTTGCAGTTTGTCTTCTCAGGAGACAGTTTGCACATGAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095151.12 ENSMUST00000108383.2 |
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| CDS-3UTR TCA 90 bp | TCATGTGCAAACTGTCTCCTGAGAAGACAAACTGCAAAACTGCATATTTCCCAATCCATATTGCCTTCTTaGTTAATGTCCCAGAGAACT | + |
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Preference number: 4 (lower is better) Translates to: SCANCLLRRQTAKLHISQSILPS*LMSQRT Trigger: AGTTCTCTGGGACATTAATCAAGAAGGCAATATGGA...TTGGGAAATATGCAGTTTTGCAGTTTGTCTTCTCAGGAGACAGTTTGCACATGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095151.12 ENSMUST00000108383.2 |
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| CDS-3UTR TCA 90 bp | ATTTACAAGCCCGCAGAGTATAGAAAGGCTAAATTGCTTATTTTCCTTATGAAGCGGAGTATTGAGGAATaGCTTTCCTGTCACAACACC | + |
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Preference number: 4 (lower is better) Translates to: IYKPAEYRKAKLLIFLMKRSIEE*LSCHNT Trigger: GGTGTTGTGACAGGAAAGTCATTCCTCAATACTCCG...CTTCATAAGGAAAATAAGCAATTTAGCCTTTCTATACTCTGCGGGCTTGTAAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095151.12 ENSMUST00000108383.2 |
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| CDS-3UTR GCA 90 bp | ATTTACAAGCCCGCAGAGTATAGAAAGGCTAAATTGCTTATTTTCCTTATGAAGTGTAGACCTCTATCCTaGTGCTGCAATCACACTTAT | + |
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Preference number: 4 (lower is better) Translates to: IYKPAEYRKAKLLIFLMKCRPLS*CCNHTY Trigger: ATAAGTGTGATTGCAGCAGCAGGATAGAGGTCTACA...CTTCATAAGGAAAATAAGCAATTTAGCCTTTCTATACTCTGCGGGCTTGTAAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095151.12 ENSMUST00000108383.2 |
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| CDS-3UTR CAA 90 bp | CAAAACTGCATATTTCCCAATGCCTGGATGACCCTAGGTTATGCTGGCATGCTGCGAGTCCTGCTATGCTaGAAATACAGACCAGGTGAC | + |
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Preference number: 5 (lower is better) Translates to: QNCIFPNAWMTLGYAGMLRVLLC*KYRPGD Trigger: GTCACCTGGTCTGTATTTCAAGCATAGCAGGACTCG...CAGCATGCCAGCATAACCTAGGGTCATCCAGGCATTGGGAAATATGCAGTTTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095151.12 ENSMUST00000108383.2 |
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| CDS-3UTR CAA 90 bp | GCAAACTGTCTCCTGAGAAGACAAACTGCAAAACTGCATATTTCCCAATGCCTGCGAGTCCTGCTATGCTaGAAATACAGACCAGGTGAC | + |
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Preference number: 5 (lower is better) Translates to: ANCLLRRQTAKLHISQCLRVLLC*KYRPGD Trigger: GTCACCTGGTCTGTATTTCAAGCATAGCAGGACTCG...CAGGCATTGGGAAATATGCAGTTTTGCAGTTTGTCTTCTCAGGAGACAGTTTGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095151.12 ENSMUST00000108383.2 |
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| CDS TCA 90 bp | CCATTAATACCAACGAGTCCTGCTATGCTTGAAATACAGACCAGGTaGCCATGGTTAGCTTTAACCATGGCAGGAAGGAAGGCCTTACAA | + |
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Preference number: 5 (lower is better) Translates to: PLIPTSPAMLEIQTR*PWLALTMAGRKALQ Trigger: TTGTAAGGCCTTCCTTCCTGCCATGGTTAAAGCTAACCATGGTCACCTGGTCTGTATTTCAAGCATAGCAGGACTCGTTGGTATTAATGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095151.12 ENSMUST00000108383.2 |
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| CDS TCA 90 bp | TCACCTTTTTGTTTGACCAGTCTACAGGTTTCCATATTGCCTTCTTaGTTAATGTCCCAGAGAACTAAAGTGGCCCCGTGGCTGGCAAAA | + |
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Preference number: 5 (lower is better) Translates to: SPFCLTSLQVSILPS*LMSQRTKVAPWLAK Trigger: TTTTGCCAGCCACGGGGCCACTTTAGTTCTCTGGGACATTAATCAAGAAGGCAATATGGAAACCTGTAGACTGGTCAAACAAAAAGGTGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000095151.12 ENSMUST00000108383.2 |
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| CDS-3UTR CAA 90 bp | GCAAACTGTCTCCTGAGAAGACAAACTGCAAAACTGCATATTTCCCAATGCCTGACATCACCTTTTTGTTaGACCAGTCTACAGGTTTCC | + |
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Preference number: 5 (lower is better) Translates to: ANCLLRRQTAKLHISQCLTSPFC*TSLQVS Trigger: GGAAACCTGTAGACTGGTCAAACAAAAAGGTGATGT...CAGGCATTGGGAAATATGCAGTTTTGCAGTTTGTCTTCTCAGGAGACAGTTTGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000095151.12 ENSMUST00000108383.2 |
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| CDS-3UTR CAA 90 bp | GACAAACTGCAAAACTGCATATTTCCCAATGCCTGGATGACCCTAGGTTATGCTACATCACCTTTTTGTTaGACCAGTCTACAGGTTTCC | + |
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Preference number: 5 (lower is better) Translates to: DKLQNCIFPNAWMTLGYATSPFC*TSLQVS Trigger: GGAAACCTGTAGACTGGTCAAACAAAAAGGTGATGT...AGCATAACCTAGGGTCATCCAGGCATTGGGAAATATGCAGTTTTGCAGTTTGTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000095151.12 ENSMUST00000108383.2 |
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| CDS-3UTR CAA 90 bp | GCAAACTGTCTCCTGAGAAGACAAACTGCAAAACTGCATATTTCCCAATGCCTGGAAGTGGATACTTGGTaGTACAGCCTTCAAACATTC | + |
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Preference number: 5 (lower is better) Translates to: ANCLLRRQTAKLHISQCLEVDTW*YSLQTF Trigger: GAATGTTTGAAGGCTGTACAACCAAGTATCCACTTC...CAGGCATTGGGAAATATGCAGTTTTGCAGTTTGTCTTCTCAGGAGACAGTTTGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095151.12 ENSMUST00000108383.2 |
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| CDS-3UTR CAA 90 bp | GACAAACTGCAAAACTGCATATTTCCCAATGCCTGGATGACCCTAGGTTATGCTAAGAGAAGTGGATACTaGGTTGTACAGCCTTCAAAC | + |
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Preference number: 5 (lower is better) Translates to: DKLQNCIFPNAWMTLGYAKRSGY*VVQPSN Trigger: GTTTGAAGGCTGTACAACCAAGTATCCACTTCTCTT...AGCATAACCTAGGGTCATCCAGGCATTGGGAAATATGCAGTTTTGCAGTTTGTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095151.12 ENSMUST00000108383.2 |
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| CDS-3UTR CAA 90 bp | TCATGTGCAAACTGTCTCCTGAGAAGACAAACTGCAAAACTGCATATTTCCCAAAGCATTGAAAATTTTTaGAGCCACATACTCCTGCTC | + |
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Preference number: 5 (lower is better) Translates to: SCANCLLRRQTAKLHISQSIENF*SHILLL Trigger: GAGCAGGAGTATGTGGCTCAAAAAATTTTCAATGCT...TTGGGAAATATGCAGTTTTGCAGTTTGTCTTCTCAGGAGACAGTTTGCACATGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000095151.12 ENSMUST00000108383.2 |
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| CDS CCA 90 bp | ACATGTGTCCACACCAAGGTACTCGCCCAGGGCAATCATCATTTTTaGAGATATTATTTGTTTGAGAAACAATGCAACATATGCAAACTT | + |
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Preference number: 5 (lower is better) Translates to: TCVHTKVLAQGNHHF*RYYLFEKQCNICKL Trigger: AAGTTTGCATATGTTGCATTGTTTCTCAAACAAATAATATCTCCAAAAATGATGATTGCCCTGGGCGAGTACCTTGGTGTGGACACATGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000095151.12 ENSMUST00000108383.2 |
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| CDS-3UTR CAA 90 bp | ATTTACAAGCCCGCAGAGTATAGAAAGGCTAAATTGCTTATTTTCCTTATGAAGAAGAGAAGTGGATACTaGGTTGTACAGCCTTCAAAC | + |
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Preference number: 5 (lower is better) Translates to: IYKPAEYRKAKLLIFLMKKRSGY*VVQPSN Trigger: GTTTGAAGGCTGTACAACCAAGTATCCACTTCTCTT...CTTCATAAGGAAAATAAGCAATTTAGCCTTTCTATACTCTGCGGGCTTGTAAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095151.12 ENSMUST00000108383.2 |
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| CDS-3UTR CAA 90 bp | ATTTACAAGCCCGCAGAGTATAGAAAGGCTAAATTGCTTATTTTCCTTATGAAGAGCATTGAAAATTTTTaGAGCCACATACTCCTGCTC | + |
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Preference number: 5 (lower is better) Translates to: IYKPAEYRKAKLLIFLMKSIENF*SHILLL Trigger: GAGCAGGAGTATGTGGCTCAAAAAATTTTCAATGCT...CTTCATAAGGAAAATAAGCAATTTAGCCTTTCTATACTCTGCGGGCTTGTAAAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000095151.12 ENSMUST00000108383.2 |
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| CDS TCA 72 bp | TGTTTGACCAGTCTACAGGTTTCCATATTGCCTTCTTaGTTAATGTCCCAGAGAACTAAAGTGGCCCCGTGG | + |
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Preference number: 6 (lower is better) Translates to: CLTSLQVSILPS*LMSQRTKVAPW Trigger: CCACGGGGCCACTTTAGTTCTCTGGGACATTAATCAAGAAGGCAATATGGAAACCTGTAGACTGGTCAAACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095151.12 ENSMUST00000108383.2 |
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| CDS GCA 72 bp | CCTGATCAGCAACTCTGTAGACCTCTATCCTGCTGCTaGAATCACACTTATAGGCAAAGACTTTCACATCAC | + |
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Preference number: 6 (lower is better) Translates to: PDQQLCRPLSCC*NHTYRQRLSHH Trigger: GTGATGTGAAAGTCTTTGCCTATAAGTGTGATTGCAGCAGCAGGATAGAGGTCTACAGAGTTGCTGATCAGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095151.12 ENSMUST00000108383.2 |
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| CDS GCA 72 bp | TTGCTCTTTCCTTTTTGTTTCCATCTGCAGCTCCTCTaGTTTGACTCTCCCTGTGAACGAAGTCATACATGT | + |
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Preference number: 6 (lower is better) Translates to: LLFPFCFHLQLL*FDSPCERSHTC Trigger: ACATGTATGACTTCGTTCACAGGGAGAGTCAAAGCAGAGGAGCTGCAGATGGAAACAAAAAGGAAAGAGCAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000095151.12 ENSMUST00000108383.2 |
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| CDS TCA 72 bp | CAAGAAATGATTTTTCCACCAAGTGATCCGGAGTATTaGGGAATGACTTTCCTGTCACAACACCTGCATTAT | + |
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Preference number: 6 (lower is better) Translates to: QEMIFPPSDPEY*GMTFLSQHLHY Trigger: ATAATGCAGGTGTTGTGACAGGAAAGTCATTCCTCAATACTCCGGATCACTTGGTGGAAAAATCATTTCTTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000095151.12 ENSMUST00000108383.2 |
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| CDS TCA 72 bp | GAAATGGCATTGACAAGAAATGATTTTTCCACCAAGTaGTCCGGAGTATTGAGGAATGACTTTCCTGTCACA | + |
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Preference number: 6 (lower is better) Translates to: EMALTRNDFSTK*SGVLRNDFPVT Trigger: TGTGACAGGAAAGTCATTCCTCAATACTCCGGATCACTTGGTGGAAAAATCATTTCTTGTCAATGCCATTTC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000095151.12 ENSMUST00000108383.2 |
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| CDS CAA 90 bp | GCTGCTGCAATCACACTTATAGGCAAAGACTTTCACATCACCTTTTaGTTTGACCAGTCTACAGGTTTCCATATTGCCTTCTTGATTAAT | + |
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Preference number: 6 (lower is better) Translates to: AAAITLIGKDFHITF*FDQSTGFHIAFLIN Trigger: ATTAATCAAGAAGGCAATATGGAAACCTGTAGACTGGTCAAACAAAAAGGTGATGTGAAAGTCTTTGCCTATAAGTGTGATTGCAGCAGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095151.12 ENSMUST00000108383.2 |
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| CDS CAA 90 bp | ACCAAGGTACTCGCCCAGGGCAATCATCATTTTTGGAGATATTATTaGTTTGAGAAACAATGCAACATATGCAAACTTGGGTATGATGAG | + |
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Preference number: 6 (lower is better) Translates to: TKVLAQGNHHFWRYY*FEKQCNICKLGYDE Trigger: CTCATCATACCCAAGTTTGCATATGTTGCATTGTTTCTCAAACAAATAATATCTCCAAAAATGATGATTGCCCTGGGCGAGTACCTTGGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000095151.12 ENSMUST00000108383.2 |
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| CDS TCA 72 bp | ACTTATAGGCAAAGACTTTCACATCACCTTTTTGTTTaGCCAGTCTACAGGTTTCCATATTGCCTTCTTGAT | + |
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Preference number: 6 (lower is better) Translates to: TYRQRLSHHLFV*PVYRFPYCLLD Trigger: ATCAAGAAGGCAATATGGAAACCTGTAGACTGGTCAAACAAAAAGGTGATGTGAAAGTCTTTGCCTATAAGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000095151.12 ENSMUST00000108383.2 |
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