Pregenerated sensors for SDHD (Mus musculus)
Ensembl gene IDs: ENSMUSG00000000171Ensembl transcript IDs: ENSMUST00000000175.6
Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AAGTCTAACTCAGGAGGGAACAGGCCTCCCTCCTGGCTGAAGAGATaGTCTTATCCTGACAGCAATCAGCTGGCTCTCCTTAAGAAATGG | + |
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Preference number: 1 (lower is better) Translates to: KSNSGGNRPPSWLKR*SYPDSNQLALLKKW Trigger: CCATTTCTTAAGGAGAGCCAGCTGATTGCTGTCAGGATAAGAGCATCTCTTCAGCCAGGAGGGAGGCCTGTTCCCTCCTGAGTTAGACTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000175.6 |
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| 3UTR CCA 90 bp | AACTCCCACGGTGGGAAGACAGTTTATCACTTAGTCTTATACTTTTaGACAGCTCACTTCTGCACAATTGAGATACATTTGAAGAGTAGT | + |
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Preference number: 1 (lower is better) Translates to: NSHGGKTVYHLVLYF*TAHFCTIEIHLKSS Trigger: ACTACTCTTCAAATGTATCTCAATTGTGCAGAAGTGAGCTGTCCAAAAGTATAAGACTAAGTGATAAACTGTCTTCCCACCGTGGGAGTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000175.6 |
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| 3UTR GCA 90 bp | AAGACAGTTTATCACTTAGTCTTATACTTTTGGACAGCTCACTTCTaGACAATTGAGATACATTTGAAGAGTAGTCTGTTTGCAATCTGT | + |
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Preference number: 1 (lower is better) Translates to: KTVYHLVLYFWTAHF*TIEIHLKSSLFAIC Trigger: ACAGATTGCAAACAGACTACTCTTCAAATGTATCTCAATTGTGCAGAAGTGAGCTGTCCAAAAGTATAAGACTAAGTGATAAACTGTCTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000175.6 |
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| 3UTR-3UTR CCA 90 bp | GCTAGTGCCCACACTCAGTGGAGTATGGAACACAGACTCACGAATGGTCGAACCCATTCTGCCCACCAATaGGCTTATCCTTCATCCCCC | + |
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Preference number: 2 (lower is better) Translates to: ASAHTQWSMEHRLTNGRTHSAHQ*AYPSSP Trigger: GGGGGATGAAGGATAAGCCCATTGGTGGGCAGAATG...GGTTCGACCATTCGTGAGTCTGTGTTCCATACTCCACTGAGTGTGGGCACTAGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000175.6 |
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| 3UTR-3UTR TCA 90 bp | GTGTCACCTGAACAAGAATGGGAGGTTCCAAAGGGAATACTTTCGAGCTTCATGGGCCTCCCTCCTGGCTaGAGAGATGCTCTTATCCTG | + |
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Preference number: 2 (lower is better) Translates to: VSPEQEWEVPKGILSSFMGLPPG*RDALIL Trigger: CAGGATAAGAGCATCTCTTCAGCCAGGAGGGAGGCC...CATGAAGCTCGAAAGTATTCCCTTTGGAACCTCCCATTCTTGTTCAGGTGACAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000175.6 |
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| 3UTR-3UTR TCA 90 bp | GAGCTGGTGTCACCTGAACAAGAATGGGAGGTTCCAAAGGGAATACTTTCGAGCTGGTCAAAGGCAACATaGGCTCATGAAATGTTCAGT | + |
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Preference number: 2 (lower is better) Translates to: ELVSPEQEWEVPKGILSSWSKAT*AHEMFS Trigger: ACTGAACATTTCATGAGCTCATGTTGCCTTTGACCA...GCTCGAAAGTATTCCCTTTGGAACCTCCCATTCTTGTTCAGGTGACACCAGCTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000175.6 |
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| 3UTR-3UTR CCA 90 bp | GGTGGGAAGACAGTTTATCACTTAGTCTTATACTTTTGGACAGCTCACTTCTGCACACTCAGTGGAGTATaGAACACAGACTCACGAATG | + |
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Preference number: 2 (lower is better) Translates to: GGKTVYHLVLYFWTAHFCTLSGV*NTDSRM Trigger: CATTCGTGAGTCTGTGTTCCATACTCCACTGAGTGT...GCAGAAGTGAGCTGTCCAAAAGTATAAGACTAAGTGATAAACTGTCTTCCCACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000175.6 |
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| 3UTR GCA 72 bp | TCAGGAGGGAACAGGCCTCCCTCCTGGCTGAAGAGATaGTCTTATCCTGACAGCAATCAGCTGGCTCTCCTT | + |
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Preference number: 3 (lower is better) Translates to: SGGNRPPSWLKR*SYPDSNQLALL Trigger: AAGGAGAGCCAGCTGATTGCTGTCAGGATAAGAGCATCTCTTCAGCCAGGAGGGAGGCCTGTTCCCTCCTGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000175.6 |
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| 3UTR CCA 72 bp | CCACACTCAGTGGAGTATGGAACACAGACTCACGAATaGTCGAACCTAACTCCTCAAACCTCTTCCTCAACA | + |
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Preference number: 3 (lower is better) Translates to: PHSVEYGTQTHE*SNLTPQTSSST Trigger: TGTTGAGGAAGAGGTTTGAGGAGTTAGGTTCGACCATTCGTGAGTCTGTGTTCCATACTCCACTGAGTGTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000175.6 |
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| 3UTR-3UTR CAA 90 bp | GGTGGGAAGACAGTTTATCACTTAGTCTTATACTTTTGGACAGCTCACTTCTGCGGAGAACTCCCTAAATaGAACTTGTCTAAATCCAGC | + |
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Preference number: 3 (lower is better) Translates to: GGKTVYHLVLYFWTAHFCGELPK*NLSKSS Trigger: GCTGGATTTAGACAAGTTCAATTTAGGGAGTTCTCC...GCAGAAGTGAGCTGTCCAAAAGTATAAGACTAAGTGATAAACTGTCTTCCCACC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000175.6 |
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| 3UTR TCA 72 bp | TCAACCTCCTTCCTAAGACTTAGACAAATTAGTCATTaGGAGCATCTCCTGATTAAATGTTCCCTAGAAGCA | + |
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Preference number: 3 (lower is better) Translates to: STSFLRLRQISH*EHLLIKCSLEA Trigger: TGCTTCTAGGGAACATTTAATCAGGAGATGCTCTCAATGACTAATTTGTCTAAGTCTTAGGAAGGAGGTTGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000175.6 |
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| CDS-3UTR GCA 90 bp | ACACTCAGTGGAGTATGGAACACAGACTCACGAATGGTCGAACCTAACTCCTCAGAGTGCCAAGAGGCCTaGCCTGGCAGCCTTCGGCAG | + |
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Preference number: 4 (lower is better) Translates to: TLSGVWNTDSRMVEPNSSECQEA*PGSLRQ Trigger: CTGCCGAAGGCTGCCAGGGCAGGCCTCTTGGCACTC...TGAGGAGTTAGGTTCGACCATTCGTGAGTCTGTGTTCCATACTCCACTGAGTGT 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000175.6 |
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| CDS-3UTR CCA 90 bp | ATACTTTCGAGCTTCATGCAAAGTCTAACTCAGGAGGGAACAGGCCTCCCTCCTAGAGCTCGAGCTCCTTaGCCACTGCAGAGAACGCCC | + |
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Preference number: 4 (lower is better) Translates to: ILSSFMQSLTQEGTGLPPRARAP*PLQRTP Trigger: GGGCGTTCTCTGCAGTGGCCAAGGAGCTCGAGCTCT...AGGAGGGAGGCCTGTTCCCTCCTGAGTTAGACTTTGCATGAAGCTCGAAAGTAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000175.6 |
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| CDS-3UTR GCA 90 bp | GCAGAGCCATCAACAGAGCTGGTGTCACCTGAACAAGAATGGGAGGTTCCAAAGGAGCTCCTTGGCCACTaGAGAGAACGCCCAGCTTTA | + |
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Preference number: 4 (lower is better) Translates to: AEPSTELVSPEQEWEVPKELLGH*RERPAL Trigger: TAAAGCTGGGCGTTCTCTGCAGTGGCCAAGGAGCTC...CTTTGGAACCTCCCATTCTTGTTCAGGTGACACCAGCTCTGTTGATGGCTCTGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000175.6 |
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| CDS-3UTR TCA 90 bp | TGCCCACACTCAGTGGAGTATGGAACACAGACTCACGAATGGTCGAACCTAACTCCAAGAGCAGAACACTaGCAACCCTCTCACTGGTCC | + |
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Preference number: 4 (lower is better) Translates to: CPHSVEYGTQTHEWSNLTPRAEH*QPSHWS Trigger: GGACCAGTGAGAGGGTTGTCAGTGTTCTGCTCTTGG...AGTTAGGTTCGACCATTCGTGAGTCTGTGTTCCATACTCCACTGAGTGTGGGCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000175.6 |
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| CDS-3UTR GCA 90 bp | GGTGGGAAGACAGTTTATCACTTAGTCTTATACTTTTGGACAGCTCACTTCTGCGTGCAGGGTGAGGGCTaGAGCCAGAGAGTAGTCCAC | + |
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Preference number: 4 (lower is better) Translates to: GGKTVYHLVLYFWTAHFCVQGEG*SQRVVH Trigger: GTGGACTACTCTCTGGCTGCAGCCCTCACCCTGCAC...GCAGAAGTGAGCTGTCCAAAAGTATAAGACTAAGTGATAAACTGTCTTCCCACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000175.6 |
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| CDS-3UTR CAA 90 bp | GCTAGTGCCCACACTCAGTGGAGTATGGAACACAGACTCACGAATGGTCGAACCGAGAGCTCGAGCTCCTaGGCCACTGCAGAGAACGCC | + |
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Preference number: 5 (lower is better) Translates to: ASAHTQWSMEHRLTNGRTESSSS*ATAENA Trigger: GGCGTTCTCTGCAGTGGCCAAGGAGCTCGAGCTCTC...GGTTCGACCATTCGTGAGTCTGTGTTCCATACTCCACTGAGTGTGGGCACTAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000175.6 |
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