RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SDHC (Mus musculus)

Ensembl gene IDs: ENSMUSG00000058076

Ensembl transcript IDs: ENSMUST00000081560.5, ENSMUST00000111336.10

Found 65 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CTGACTCAGGTTCAGTGCTTGCCTAGCACGGATGGGACCCTGGGCTaGATTCCTGGCACCACCAGACCTCCCGGGGCCTGTCTAGAGGAG +
Preference number: 1 (lower is better)
Translates to: LTQVQCLPSTDGTLG*IPGTTRPPGACLEE
Trigger: CTCCTCTAGACAGGCCCCGGGAGGTCTGGTGGTGCCAGGAATTCAGCCCAGGGTCCCATCCGTGCTAGGCAAGCACTGAACCTGAGTCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111336.10
3UTR TCA 90 bp TCAGTTCGAGGCCTGTCTGGGCTGGGCTGGGTACTTGGCAAGGCCTaGCTCAGGTTCAGTGCTTGCCTAGCACGGATGGGACCCTGGGCT +
Preference number: 1 (lower is better)
Translates to: SVRGLSGLGWVLGKA*LRFSACLARMGPWA
Trigger: AGCCCAGGGTCCCATCCGTGCTAGGCAAGCACTGAACCTGAGTCAGGCCTTGCCAAGTACCCAGCCCAGCCCAGACAGGCCTCGAACTGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111336.10
3UTR CCA 90 bp GGGAGGCTGAAGCAGATGGGTGGTCAGTTCGAGGCCTGTCTGGGCTaGGCTGGGTACTTGGCAAGGCCTGACTCAGGTTCAGTGCTTGCC +
Preference number: 1 (lower is better)
Translates to: GRLKQMGGQFEACLG*AGYLARPDSGSVLA
Trigger: GGCAAGCACTGAACCTGAGTCAGGCCTTGCCAAGTACCCAGCCCAGCCCAGACAGGCCTCGAACTGACCACCCATCTGCTTCAGCCTCCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111336.10
3UTR CCA 90 bp AGATGGGTGGTCAGTTCGAGGCCTGTCTGGGCTGGGCTGGGTACTTaGCAAGGCCTGACTCAGGTTCAGTGCTTGCCTAGCACGGATGGG +
Preference number: 1 (lower is better)
Translates to: RWVVSSRPVWAGLGT*QGLTQVQCLPSTDG
Trigger: CCCATCCGTGCTAGGCAAGCACTGAACCTGAGTCAGGCCTTGCCAAGTACCCAGCCCAGCCCAGACAGGCCTCGAACTGACCACCCATCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111336.10
3UTR TCA 90 bp TCGCATGTGGTAGCATGGTCCTGTAATTCCAGCTACTTGGGAGGCTaGAGCAGATGGGTGGTCAGTTCGAGGCCTGTCTGGGCTGGGCTG +
Preference number: 1 (lower is better)
Translates to: SHVVAWSCNSSYLGG*SRWVVSSRPVWAGL
Trigger: CAGCCCAGCCCAGACAGGCCTCGAACTGACCACCCATCTGCTTCAGCCTCCCAAGTAGCTGGAATTACAGGACCATGCTACCACATGCGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111336.10
3UTR CCA 90 bp CATGGTCCTGTAATTCCAGCTACTTGGGAGGCTGAAGCAGATGGGTaGTCAGTTCGAGGCCTGTCTGGGCTGGGCTGGGTACTTGGCAAG +
Preference number: 1 (lower is better)
Translates to: HGPVIPATWEAEADG*SVRGLSGLGWVLGK
Trigger: CTTGCCAAGTACCCAGCCCAGCCCAGACAGGCCTCGAACTGACCACCCATCTGCTTCAGCCTCCCAAGTAGCTGGAATTACAGGACCATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111336.10
3UTR GCA 90 bp AAACAGCCCTCAACCCAACCTAACCTGGGCCCAGCCCACCTCTGCTaGCACGGATTTGAGTTCATGCTGTCTTCCTGTCTAACTGCCACC +
Preference number: 1 (lower is better)
Translates to: KQPSTQPNLGPAHLC*HGFEFMLSSCLTAT
Trigger: GGTGGCAGTTAGACAGGAAGACAGCATGAACTCAAATCCGTGGCAGCAGAGGTGGGCTGGGCCCAGGTTAGGTTGGGTTGAGGGCTGTTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111336.10
3UTR GCA 90 bp ATGAAACAGCCCTCAACCCAACCTAACCTGGGCCCAGCCCACCTCTaGTGCCACGGATTTGAGTTCATGCTGTCTTCCTGTCTAACTGCC +
Preference number: 1 (lower is better)
Translates to: MKQPSTQPNLGPAHL*CHGFEFMLSSCLTA
Trigger: GGCAGTTAGACAGGAAGACAGCATGAACTCAAATCCGTGGCAGCAGAGGTGGGCTGGGCCCAGGTTAGGTTGGGTTGAGGGCTGTTTCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111336.10
3UTR TCA 90 bp TACTACAACAGGTCTTTAAGCCGCTCTACTGCACTCCAAGGGGATTaGAAGCATGTGGCATCTAAACAAATCAGGAGAACCTGGGAGGCT +
Preference number: 1 (lower is better)
Translates to: YYNRSLSRSTALQGD*KHVASKQIRRTWEA
Trigger: AGCCTCCCAGGTTCTCCTGATTTGTTTAGATGCCACATGCTTTCAATCCCCTTGGAGTGCAGTAGAGCGGCTTAAAGACCTGTTGTAGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081560.5
ENSMUST00000111336.10
3UTR CCA 90 bp CCAGCCTGCCAATATGTTGACCTTTGCCCTGTCTATACATCTTTCTaGCACTGGTTGTTGAATTTAATGCCCTTGCCAAGTCTAAAGCAA +
Preference number: 1 (lower is better)
Translates to: PACQYVDLCPVYTSF*HWLLNLMPLPSLKQ
Trigger: TTGCTTTAGACTTGGCAAGGGCATTAAATTCAACAACCAGTGCCAGAAAGATGTATAGACAGGGCAAAGGTCAACATATTGGCAGGCTGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111336.10
3UTR CCA 90 bp TGCCAATATGTTGACCTTTGCCCTGTCTATACATCTTTCTGGCACTaGTTGTTGAATTTAATGCCCTTGCCAAGTCTAAAGCAAAAGTGT +
Preference number: 1 (lower is better)
Translates to: CQYVDLCPVYTSFWH*LLNLMPLPSLKQKC
Trigger: ACACTTTTGCTTTAGACTTGGCAAGGGCATTAAATTCAACAACCAGTGCCAGAAAGATGTATAGACAGGGCAAAGGTCAACATATTGGCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111336.10
3UTR-3UTR CCA 90 bp GACCTGGCTTTGACCCCTAGCACCACAAACAAAGCACCCTTGGTAAGGATCCAGGCAGCCCACAGGCAGTaGCACTCGGGGCGGTCACAG +
Preference number: 2 (lower is better)
Translates to: DLALTPSTTNKAPLVRIQAAHRQ*HSGRSQ
Trigger: CTGTGACCGCCCCGAGTGCCACTGCCTGTGGGCTGC...CTGGATCCTTACCAAGGGTGCTTTGTTTGTGGTGCTAGGGGTCAAAGCCAGGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111336.10
3UTR-3UTR GCA 90 bp CAGCAGCCCACAGGCAGTGGCACTCGGGGCGGTCACAGAACTGGCATTGTTTCCTTTAAGCCGCTCTACTaGACTCCAAGGGGATTGAAA +
Preference number: 2 (lower is better)
Translates to: QQPTGSGTRGGHRTGIVSFKPLY*TPRGLK
Trigger: TTTCAATCCCCTTGGAGTGCAGTAGAGCGGCTTAAA...GGAAACAATGCCAGTTCTGTGACCGCCCCGAGTGCCACTGCCTGTGGGCTGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000081560.5
ENSMUST00000111336.10
3UTR-3UTR CCA 90 bp GCCTACAGACCGGCTTACAAAGAGAAAAATAAAGAAGCCAGGCGACCTACTTCCCCTGGGCTGAATTCCTaGCACCACCAGACCTCCCGG +
Preference number: 2 (lower is better)
Translates to: AYRPAYKEKNKEARRPTSPGLNS*HHQTSR
Trigger: CCGGGAGGTCTGGTGGTGCCAGGAATTCAGCCCAGG...GGAAGTAGGTCGCCTGGCTTCTTTATTTTTCTCTTTGTAAGCCGGTCTGTAGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111336.10
3UTR-3UTR CCA 90 bp GCCTACAGACCGGCTTACAAAGAGAAAAATAAAGAAGCCAGGCGACCTACTTCCGAGGCCTGTCTGGGCTaGGCTGGGTACTTGGCAAGG +
Preference number: 2 (lower is better)
Translates to: AYRPAYKEKNKEARRPTSEACLG*AGYLAR
Trigger: CCTTGCCAAGTACCCAGCCCAGCCCAGACAGGCCTC...GGAAGTAGGTCGCCTGGCTTCTTTATTTTTCTCTTTGTAAGCCGGTCTGTAGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111336.10
3UTR CAA 90 bp TGGTGTAGTGGTACAGCGCTTGCTAACACGCACAAGGACCTGGCTTaGACCCCTAGCACCACAAACAAAGCACCCTTGGTAAGGATCCAG +
Preference number: 2 (lower is better)
Translates to: WCSGTALANTHKDLA*TPSTTNKAPLVRIQ
Trigger: CTGGATCCTTACCAAGGGTGCTTTGTTTGTGGTGCTAGGGGTCAAAGCCAGGTCCTTGTGCGTGTTAGCAAGCGCTGTACCACTACACCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111336.10
3UTR-3UTR TCA 90 bp GCCTACAGACCGGCTTACAAAGAGAAAAATAAAGAAGCCAGGCGACCTACTTCCCTTGGTGGTGGGGACTaGACCACAGGCCTTGGGCAT +
Preference number: 2 (lower is better)
Translates to: AYRPAYKEKNKEARRPTSLGGGD*TTGLGH
Trigger: ATGCCCAAGGCCTGTGGTTCAGTCCCCACCACCAAG...GGAAGTAGGTCGCCTGGCTTCTTTATTTTTCTCTTTGTAAGCCGGTCTGTAGGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111336.10
3UTR-3UTR CCA 90 bp CAGCAGCCCACAGGCAGTGGCACTCGGGGCGGTCACAGAACTGGCATTGTTTCCGGGATTGAAAGCATGTaGCATCTAAACAAATCAGGA +
Preference number: 2 (lower is better)
Translates to: QQPTGSGTRGGHRTGIVSGIESM*HLNKSG
Trigger: TCCTGATTTGTTTAGATGCCACATGCTTTCAATCCC...GGAAACAATGCCAGTTCTGTGACCGCCCCGAGTGCCACTGCCTGTGGGCTGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081560.5
ENSMUST00000111336.10
3UTR CAA 90 bp CACAAGGACCTGGCTTTGACCCCTAGCACCACAAACAAAGCACCCTaGGTAAGGATCCAGGGCCTCAGTAGGGGTAAAGAAGCAACGTTT +
Preference number: 2 (lower is better)
Translates to: HKDLALTPSTTNKAP*VRIQGLSRGKEATF
Trigger: AAACGTTGCTTCTTTACCCCTACTGAGGCCCTGGATCCTTACCAAGGGTGCTTTGTTTGTGGTGCTAGGGGTCAAAGCCAGGTCCTTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111336.10
3UTR-3UTR TCA 90 bp GCTTTGACCCCTAGCACCACAAACAAAGCACCCTTGGTAAGGATCCAGGGCCTCCCCCGCATGCTTAGCTaGCTTCTTATGTTCTTTCCT +
Preference number: 2 (lower is better)
Translates to: ALTPSTTNKAPLVRIQGLPRMLS*LLMFFP
Trigger: AGGAAAGAACATAAGAAGTCAGCTAAGCATGCGGGG...GAGGCCCTGGATCCTTACCAAGGGTGCTTTGTTTGTGGTGCTAGGGGTCAAAGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111336.10
3UTR-3UTR CCA 90 bp CAGCCCACAGGCAGTGGCACTCGGGGCGGTCACAGAACTGGCATTGTTTCCACTGGGATTGAAAGCATGTaGCATCTAAACAAATCAGGA +
Preference number: 2 (lower is better)
Translates to: QPTGSGTRGGHRTGIVSTGIESM*HLNKSG
Trigger: TCCTGATTTGTTTAGATGCCACATGCTTTCAATCCC...AGTGGAAACAATGCCAGTTCTGTGACCGCCCCGAGTGCCACTGCCTGTGGGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081560.5
ENSMUST00000111336.10
3UTR-3UTR TCA 90 bp AGGCAGAAGCAAGATCACACCAACTGGAAGGTAGTCTGGGTAAGACTTCCAGGCCATCTTCAAGAACTCTaGTGCCTCCAATCCTGCCCT +
Preference number: 2 (lower is better)
Translates to: RQKQDHTNWKVVWVRLPGHLQEL*CLQSCP
Trigger: AGGGCAGGATTGGAGGCATCAGAGTTCTTGAAGATG...GCCTGGAAGTCTTACCCAGACTACCTTCCAGTTGGTGTGATCTTGCTTCTGCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111336.10
3UTR-3UTR TCA 90 bp TACAAAGAGAAAAATAAAGAAGCCAGGCGACCTACTTCCCTCCAATCACTGGTTGATGGGACCCTGGGCTaGATTCCTGGCACCACCAGA +
Preference number: 2 (lower is better)
Translates to: YKEKNKEARRPTSLQSLVDGTLG*IPGTTR
Trigger: TCTGGTGGTGCCAGGAATTCAGCCCAGGGTCCCATC...AACCAGTGATTGGAGGGAAGTAGGTCGCCTGGCTTCTTTATTTTTCTCTTTGTA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111336.10
3UTR-3UTR CCA 90 bp TACAAAGAGAAAAATAAAGAAGCCAGGCGACCTACTTCCCTCCAATCACTGGTTTGTTTTTCTTGGTGGTaGGGACTGAACCACAGGCCT +
Preference number: 2 (lower is better)
Translates to: YKEKNKEARRPTSLQSLVCFSWW*GLNHRP
Trigger: AGGCCTGTGGTTCAGTCCCCACCACCAAGAAAAACA...AACCAGTGATTGGAGGGAAGTAGGTCGCCTGGCTTCTTTATTTTTCTCTTTGTA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000111336.10
3UTR CAA 90 bp GATCACACCAACTGGAAGGTAGTCTGGGTAAGACTTCCAGGCCATTaGGGGATAAATGGTGAATCCCTTTCTACAGATTTCAAGAGACTA +
Preference number: 2 (lower is better)
Translates to: DHTNWKVVWVRLPGH*GINGESLSTDFKRL
Trigger: TAGTCTCTTGAAATCTGTAGAAAGGGATTCACCATTTATCCCCAAATGGCCTGGAAGTCTTACCCAGACTACCTTCCAGTTGGTGTGATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111336.10
3UTR CAA 90 bp CCTGTCTATACATCTTTCTGGCACTGGTTGTTGAATTTAATGCCCTaGCCAAGTCTAAAGCAAAAGTGTTTCCCCATGAACTCTGACTCT +
Preference number: 2 (lower is better)
Translates to: PVYTSFWHWLLNLMP*PSLKQKCFPMNSDS
Trigger: AGAGTCAGAGTTCATGGGGAAACACTTTTGCTTTAGACTTGGCAAGGGCATTAAATTCAACAACCAGTGCCAGAAAGATGTATAGACAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111336.10
3UTR CAA 90 bp TATGTTGACCTTTGCCCTGTCTATACATCTTTCTGGCACTGGTTGTaGAATTTAATGCCCTTGCCAAGTCTAAAGCAAAAGTGTTTCCCC +
Preference number: 2 (lower is better)
Translates to: YVDLCPVYTSFWHWL*NLMPLPSLKQKCFP
Trigger: GGGGAAACACTTTTGCTTTAGACTTGGCAAGGGCATTAAATTCAACAACCAGTGCCAGAAAGATGTATAGACAGGGCAAAGGTCAACATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111336.10
3UTR TCA 72 bp GTTCAGTGCTTGCCTAGCACGGATGGGACCCTGGGCTaGATTCCTGGCACCACCAGACCTCCCGGGGCCTGT +
Preference number: 3 (lower is better)
Translates to: VQCLPSTDGTLG*IPGTTRPPGAC
Trigger: ACAGGCCCCGGGAGGTCTGGTGGTGCCAGGAATTCAGCCCAGGGTCCCATCCGTGCTAGGCAAGCACTGAAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111336.10
3UTR TCA 72 bp GGCCTGTCTGGGCTGGGCTGGGTACTTGGCAAGGCCTaGCTCAGGTTCAGTGCTTGCCTAGCACGGATGGGA +
Preference number: 3 (lower is better)
Translates to: GLSGLGWVLGKA*LRFSACLARMG
Trigger: TCCCATCCGTGCTAGGCAAGCACTGAACCTGAGTCAGGCCTTGCCAAGTACCCAGCCCAGCCCAGACAGGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111336.10
3UTR CCA 72 bp GTCAGTTCGAGGCCTGTCTGGGCTGGGCTGGGTACTTaGCAAGGCCTGACTCAGGTTCAGTGCTTGCCTAGC +
Preference number: 3 (lower is better)
Translates to: VSSRPVWAGLGT*QGLTQVQCLPS
Trigger: GCTAGGCAAGCACTGAACCTGAGTCAGGCCTTGCCAAGTACCCAGCCCAGCCCAGACAGGCCTCGAACTGAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111336.10
3UTR CCA 72 bp AAGCAGATGGGTGGTCAGTTCGAGGCCTGTCTGGGCTaGGCTGGGTACTTGGCAAGGCCTGACTCAGGTTCA +
Preference number: 3 (lower is better)
Translates to: KQMGGQFEACLG*AGYLARPDSGS
Trigger: TGAACCTGAGTCAGGCCTTGCCAAGTACCCAGCCCAGCCCAGACAGGCCTCGAACTGACCACCCATCTGCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111336.10
3UTR GCA 72 bp CCCTCAACCCAACCTAACCTGGGCCCAGCCCACCTCTaGTGCCACGGATTTGAGTTCATGCTGTCTTCCTGT +
Preference number: 3 (lower is better)
Translates to: PSTQPNLGPAHL*CHGFEFMLSSC
Trigger: ACAGGAAGACAGCATGAACTCAAATCCGTGGCAGCAGAGGTGGGCTGGGCCCAGGTTAGGTTGGGTTGAGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111336.10
3UTR CCA 72 bp GTAATTCCAGCTACTTGGGAGGCTGAAGCAGATGGGTaGTCAGTTCGAGGCCTGTCTGGGCTGGGCTGGGTA +
Preference number: 3 (lower is better)
Translates to: VIPATWEAEADG*SVRGLSGLGWV
Trigger: TACCCAGCCCAGCCCAGACAGGCCTCGAACTGACCACCCATCTGCTTCAGCCTCCCAAGTAGCTGGAATTAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111336.10
3UTR TCA 72 bp CTTGAGGCCAAACACTACTTGGGATCAGGAATAGGCTaGGGGCTGAGGGTGGTGGTAACATGCACCCGGGAG +
Preference number: 3 (lower is better)
Translates to: LEAKHYLGSGIG*GLRVVVTCTRE
Trigger: CTCCCGGGTGCATGTTACCACCACCCTCAGCCCTCAGCCTATTCCTGATCCCAAGTAGTGTTTGGCCTCAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111336.10
3UTR GCA 72 bp CCTCCACTGGTGCTAGGTGTCCATAACCAAATGGTCTaGTTAAGTACCAAGCTGGCCATCCACAGGCCTGGG +
Preference number: 3 (lower is better)
Translates to: PPLVLGVHNQMV*LSTKLAIHRPG
Trigger: CCCAGGCCTGTGGATGGCCAGCTTGGTACTTAAGCAGACCATTTGGTTATGGACACCTAGCACCAGTGGAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111336.10
3UTR TCA 72 bp ATCTCTTGGAGTAGTGTTTTTCTTGGTGGTGGGGACTaGACCACAGGCCTTGGGCATATGATCATGGAACCA +
Preference number: 3 (lower is better)
Translates to: ISWSSVFLGGGD*TTGLGHMIMEP
Trigger: TGGTTCCATGATCATATGCCCAAGGCCTGTGGTTCAGTCCCCACCACCAAGAAAAACACTACTCCAAGAGAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111336.10
3UTR CCA 72 bp TGTTTTTCTTGGTGGTGGGGACTGAACCACAGGCCTTaGGCATATGATCATGGAACCAAATCTCTAGTCCCA +
Preference number: 3 (lower is better)
Translates to: CFSWWWGLNHRP*AYDHGTKSLVP
Trigger: TGGGACTAGAGATTTGGTTCCATGATCATATGCCCAAGGCCTGTGGTTCAGTCCCCACCACCAAGAAAAACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111336.10
3UTR CCA 72 bp AGGCAGAAGCAAGATCACACCAACTGGAAGGTAGTCTaGGTAAGACTTCCAGGCCATTTGGGGATAAATGGT +
Preference number: 3 (lower is better)
Translates to: RQKQDHTNWKVV*VRLPGHLGING
Trigger: ACCATTTATCCCCAAATGGCCTGGAAGTCTTACCCAGACTACCTTCCAGTTGGTGTGATCTTGCTTCTGCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111336.10
3UTR TCA 72 bp TTCCCCATGAACTCTGACTCTACTCTAAGGACAACCTaGTTGACGCTGGATGAAATCTACAGGACATCCCAG +
Preference number: 3 (lower is better)
Translates to: FPMNSDSTLRTT*LTLDEIYRTSQ
Trigger: CTGGGATGTCCTGTAGATTTCATCCAGCGTCAATCAGGTTGTCCTTAGAGTAGAGTCAGAGTTCATGGGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111336.10
3UTR-3UTR CAA 90 bp GCCTACAGACCGGCTTACAAAGAGAAAAATAAAGAAGCCAGGCGACCTACTTCCAAATCTCTCCACTACTaGGTTGTGATTACCTCATTT +
Preference number: 3 (lower is better)
Translates to: AYRPAYKEKNKEARRPTSKSLHY*VVITSF
Trigger: AAATGAGGTAATCACAACCAAGTAGTGGAGAGATTT...GGAAGTAGGTCGCCTGGCTTCTTTATTTTTCTCTTTGTAAGCCGGTCTGTAGGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111336.10
3UTR-3UTR CAA 90 bp TACAAAGAGAAAAATAAAGAAGCCAGGCGACCTACTTCCCTCCAATCACTGGTTTTCTGGCACTGGTTGTaGAATTTAATGCCCTTGCCA +
Preference number: 3 (lower is better)
Translates to: YKEKNKEARRPTSLQSLVFWHWL*NLMPLP
Trigger: TGGCAAGGGCATTAAATTCAACAACCAGTGCCAGAA...AACCAGTGATTGGAGGGAAGTAGGTCGCCTGGCTTCTTTATTTTTCTCTTTGTA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111336.10
3UTR TCA 72 bp ACAACATGGTGGTTCACAACCATCTGTAATGAGATCTaGTGCCCTCTTCTGGGGTATCTGAAGACAACTATA +
Preference number: 3 (lower is better)
Translates to: TTWWFTTICNEI*CPLLGYLKTTI
Trigger: TATAGTTGTCTTCAGATACCCCAGAAGAGGGCATCAGATCTCATTACAGATGGTTGTGAACCACCATGTTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111336.10
3UTR CCA 72 bp CAATATGTTGACCTTTGCCCTGTCTATACATCTTTCTaGCACTGGTTGTTGAATTTAATGCCCTTGCCAAGT +
Preference number: 3 (lower is better)
Translates to: QYVDLCPVYTSF*HWLLNLMPLPS
Trigger: ACTTGGCAAGGGCATTAAATTCAACAACCAGTGCCAGAAAGATGTATAGACAGGGCAAAGGTCAACATATTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111336.10
3UTR-3UTR CAA 90 bp TACAAAGAGAAAAATAAAGAAGCCAGGCGACCTACTTCCCTCCAATCACTGGTTTCTTATGTTCTTTCCTaGACCAAAATCTCTCCACTA +
Preference number: 3 (lower is better)
Translates to: YKEKNKEARRPTSLQSLVSYVLS*TKISPL
Trigger: TAGTGGAGAGATTTTGGTCAAGGAAAGAACATAAGA...AACCAGTGATTGGAGGGAAGTAGGTCGCCTGGCTTCTTTATTTTTCTCTTTGTA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111336.10
3UTR CCA 72 bp GCATATGATCATGGAACCAAATCTCTAGTCCCAAGATaGAGCTTTTACTCCAGAGTTGGCAAAAATCTATCA +
Preference number: 3 (lower is better)
Translates to: AYDHGTKSLVPR*SFYSRVGKNLS
Trigger: TGATAGATTTTTGCCAACTCTGGAGTAAAAGCTCCATCTTGGGACTAGAGATTTGGTTCCATGATCATATGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111336.10
CDS-3UTR TCA 90 bp GACCCTCAGCACAAATCAGTCAAATGTGGAACCGGAGCAAGGGCTCCCAGGCCCTGGGCTCGGAGGCAGTaGCGGCTGACATGTCTCAGC +
Preference number: 4 (lower is better)
Translates to: DPQHKSVKCGTGARAPRPWARRQ*RLTCLS
Trigger: GCTGAGACATGTCAGCCGTCACTGCCTCCGAGCCCA...GGGCCTGGGAGCCCTTGCTCCGGTTCCACATTTGACTGATTTGTGCTGAGGGTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081560.5
ENSMUST00000111336.10
CDS-3UTR GCA 90 bp CAGCAGCCCACAGGCAGTGGCACTCGGGGCGGTCACAGAACTGGCATTGTTTCCCCCAGGAAGCAGCAGTaGCGACAGGCCAAAAAGAGA +
Preference number: 4 (lower is better)
Translates to: QQPTGSGTRGGHRTGIVSPRKQQ*RQAKKR
Trigger: TCTCTTTTTGGCCTGTCGGCACTGCTGCTTCCTGGG...GGAAACAATGCCAGTTCTGTGACCGCCCCGAGTGCCACTGCCTGTGGGCTGCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000081560.5
ENSMUST00000111336.10
CDS-3UTR TCA 90 bp CAGCCCACAGGCAGTGGCACTCGGGGCGGTCACAGAACTGGCATTGTTTCCACTTCGGATCCCATTCAGTaGGTGGTACATGAGCGGGAA +
Preference number: 4 (lower is better)
Translates to: QPTGSGTRGGHRTGIVSTSDPIQ*VVHERE
Trigger: TTCCCGCTCATGTACCACTCACTGAATGGGATCCGA...AGTGGAAACAATGCCAGTTCTGTGACCGCCCCGAGTGCCACTGCCTGTGGGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081560.5
ENSMUST00000111336.10
CDS-3UTR TCA 90 bp CTAGCTGAGCAGGACAATCCCTCCTCCTCCACCTCTCTCCTCTCAGTCACGCGGTCGGATCCCATTCAGTaGGTGGTACATGAGCGGGAA +
Preference number: 4 (lower is better)
Translates to: LAEQDNPSSSTSLLSVTRSDPIQ*VVHERE
Trigger: TTCCCGCTCATGTACCACTCACTGAATGGGATCCGA...CCGCGTGACTGAGAGGAGAGAGGTGGAGGAGGAGGGATTGTCCTGCTCAGCTAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111336.10
CDS-3UTR GCA 90 bp GACCCTCAGCACAAATCAGTCAAATGTGGAACCGGAGCAAGGGCTCCCAGGCCCCCCAGGAAGCAGCAGTaGCGACAGGCCAAAAAGAGA +
Preference number: 4 (lower is better)
Translates to: DPQHKSVKCGTGARAPRPPRKQQ*RQAKKR
Trigger: TCTCTTTTTGGCCTGTCGGCACTGCTGCTTCCTGGG...GGGCCTGGGAGCCCTTGCTCCGGTTCCACATTTGACTGATTTGTGCTGAGGGTC
58% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 2 transcripts:
ENSMUST00000081560.5
ENSMUST00000111336.10
CDS-3UTR CCA 90 bp GCTTTGACCCCTAGCACCACAAACAAAGCACCCTTGGTAAGGATCCAGGGCCTCCCAGACAGCCAGACCTaGGGTATTGCCAGGCCTTTT +
Preference number: 4 (lower is better)
Translates to: ALTPSTTNKAPLVRIQGLPDSQT*GIARPF
Trigger: AAAAGGCCTGGCAATACCCCAGGTCTGGCTGTCTGG...GAGGCCCTGGATCCTTACCAAGGGTGCTTTGTTTGTGGTGCTAGGGGTCAAAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111336.10
CDS-3UTR TCA 90 bp GATGACCCTTTCTTACTACAACAGGTCTTTAAGCCGCTCTACTGCACTCCAAGGTGGGCTCGGAGGCAGTaGCGGCTGACATGTCTCAGC +
Preference number: 4 (lower is better)
Translates to: DDPFLLQQVFKPLYCTPRWARRQ*RLTCLS
Trigger: GCTGAGACATGTCAGCCGTCACTGCCTCCGAGCCCA...CCTTGGAGTGCAGTAGAGCGGCTTAAAGACCTGTTGTAGTAAGAAAGGGTCATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081560.5
ENSMUST00000111336.10
CDS-3UTR TCA 90 bp ACCCTCAGCACAAATCAGTCAAATGTGGAACCGGAGCAAGGGCTCCCAGGCCCATTTCTGATACAAAGCTaGGCATTCAGGTGGGCTCGG +
Preference number: 4 (lower is better)
Translates to: TLSTNQSNVEPEQGLPGPFLIQS*AFRWAR
Trigger: CCGAGCCCACCTGAATGCTCAGCTTTGTATCAGAAA...TGGGCCTGGGAGCCCTTGCTCCGGTTCCACATTTGACTGATTTGTGCTGAGGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081560.5
ENSMUST00000111336.10
CDS-3UTR TCA 90 bp GACCCTCAGCACAAATCAGTCAAATGTGGAACCGGAGCAAGGGCTCCCAGGCCCAGACAGAGGACGGTTTaGACTCGTGTTCTTCTTCCA +
Preference number: 4 (lower is better)
Translates to: DPQHKSVKCGTGARAPRPRQRTV*TRVLLP
Trigger: TGGAAGAAGAACACGAGTTCAAACCGTCCTCTGTCT...GGGCCTGGGAGCCCTTGCTCCGGTTCCACATTTGACTGATTTGTGCTGAGGGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111336.10
CDS-3UTR CCA 90 bp AGCGGAAAGCTGACCCTCAGCACAAATCAGTCAAATGTGGAACCGGAGCAAGGGCCAGACAGCCAGACCTaGGGTATTGCCAGGCCTTTT +
Preference number: 4 (lower is better)
Translates to: SGKLTLSTNQSNVEPEQGPDSQT*GIARPF
Trigger: AAAAGGCCTGGCAATACCCCAGGTCTGGCTGTCTGG...CCCTTGCTCCGGTTCCACATTTGACTGATTTGTGCTGAGGGTCAGCTTTCCGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081560.5
ENSMUST00000111336.10
3UTR CAA 72 bp GGTACAGCGCTTGCTAACACGCACAAGGACCTGGCTTaGACCCCTAGCACCACAAACAAAGCACCCTTGGTA +
Preference number: 4 (lower is better)
Translates to: GTALANTHKDLA*TPSTTNKAPLV
Trigger: TACCAAGGGTGCTTTGTTTGTGGTGCTAGGGGTCAAAGCCAGGTCCTTGTGCGTGTTAGCAAGCGCTGTACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111336.10
3UTR CAA 72 bp CTGGCTTTGACCCCTAGCACCACAAACAAAGCACCCTaGGTAAGGATCCAGGGCCTCAGTAGGGGTAAAGAA +
Preference number: 4 (lower is better)
Translates to: LALTPSTTNKAP*VRIQGLSRGKE
Trigger: TTCTTTACCCCTACTGAGGCCCTGGATCCTTACCAAGGGTGCTTTGTTTGTGGTGCTAGGGGTCAAAGCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111336.10
CDS-3UTR GCA 90 bp AGCGGAAAGCTGACCCTCAGCACAAATCAGTCAAATGTGGAACCGGAGCAAGGGGTGGCAAACGGACAGTaGCATAGGAAGAGACCATTT +
Preference number: 4 (lower is better)
Translates to: SGKLTLSTNQSNVEPEQGVANGQ*HRKRPF
Trigger: AAATGGTCTCTTCCTATGGCACTGTCCGTTTGCCAC...CCCTTGCTCCGGTTCCACATTTGACTGATTTGTGCTGAGGGTCAGCTTTCCGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081560.5
ENSMUST00000111336.10
CDS-3UTR TCA 90 bp ACCCTCAGCACAAATCAGTCAAATGTGGAACCGGAGCAAGGGCTCCCAGGCCCACACAAACATCAAATATaGCTCAAAGTTCCCAGGAAG +
Preference number: 4 (lower is better)
Translates to: TLSTNQSNVEPEQGLPGPHKHQI*LKVPRK
Trigger: CTTCCTGGGAACTTTGAGTCATATTTGATGTTTGTG...TGGGCCTGGGAGCCCTTGCTCCGGTTCCACATTTGACTGATTTGTGCTGAGGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081560.5
ENSMUST00000111336.10
CDS-3UTR TCA 90 bp ATCTTCCTCATACATCAAAAGCTGTATCTGTTCCCAGGCTCGAGCTCCAAGCTCTTTCTGATACAAAGCTaGGCATTCAGGTGGGCTCGG +
Preference number: 4 (lower is better)
Translates to: IFLIHQKLYLFPGSSSKLFLIQS*AFRWAR
Trigger: CCGAGCCCACCTGAATGCTCAGCTTTGTATCAGAAA...GAGCTTGGAGCTCGAGCCTGGGAACAGATACAGCTTTTGATGTATGAGGAAGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111336.10
CDS-3UTR GCA 90 bp TTTGATCTTCCTCATACATCAAAAGCTGTATCTGTTCCCAGGCTCGAGCTCCAAGTGGCAAACGGACAGTaGCATAGGAAGAGACCATTT +
Preference number: 4 (lower is better)
Translates to: FDLPHTSKAVSVPRLELQVANGQ*HRKRPF
Trigger: AAATGGTCTCTTCCTATGGCACTGTCCGTTTGCCAC...TTGGAGCTCGAGCCTGGGAACAGATACAGCTTTTGATGTATGAGGAAGATCAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111336.10
CDS-3UTR TCA 90 bp GAGAAAAATAAAGAAGCCAGGCGACCTACTTCCCTCCAATCACTGGTTAAGAAGAAGGAGCAGCATTTCTaGTACAAAGCTGAGCATTCA +
Preference number: 4 (lower is better)
Translates to: EKNKEARRPTSLQSLVKKKEQHF*YKAEHS
Trigger: TGAATGCTCAGCTTTGTATCAGAAATGCTGCTCCTT...CTTCTTAACCAGTGATTGGAGGGAAGTAGGTCGCCTGGCTTCTTTATTTTTCTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111336.10
3UTR CAA 72 bp ACATCTTTCTGGCACTGGTTGTTGAATTTAATGCCCTaGCCAAGTCTAAAGCAAAAGTGTTTCCCCATGAAC +
Preference number: 4 (lower is better)
Translates to: TSFWHWLLNLMP*PSLKQKCFPMN
Trigger: GTTCATGGGGAAACACTTTTGCTTTAGACTTGGCAAGGGCATTAAATTCAACAACCAGTGCCAGAAAGATGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111336.10
3UTR CAA 72 bp AAAATGTCCACATTAATTTCCCAGCCTGCCAATATGTaGACCTTTGCCCTGTCTATACATCTTTCTGGCACT +
Preference number: 4 (lower is better)
Translates to: KMSTLISQPANM*TFALSIHLSGT
Trigger: AGTGCCAGAAAGATGTATAGACAGGGCAAAGGTCAACATATTGGCAGGCTGGGAAATTAATGTGGACATTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111336.10
CDS-3UTR CAA 90 bp GGCCCAGCCCACCTCTGCTGCCACGGATTTGAGTTCATGCTGTCTTCCTGTCTAGAGACAGAGGACGGTTaGAACTCGTGTTCTTCTTCC +
Preference number: 5 (lower is better)
Translates to: GPAHLCCHGFEFMLSSCLETEDG*NSCSSS
Trigger: GGAAGAAGAACACGAGTTCAAACCGTCCTCTGTCTC...TAGACAGGAAGACAGCATGAACTCAAATCCGTGGCAGCAGAGGTGGGCTGGGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111336.10