Pregenerated sensors for SDHAF4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026154Ensembl transcript IDs: ENSMUST00000027338.4
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | TTCAAAGCTGTCACATGCATTTTAGGACATACGATGGAAATTACACACTTAAAGACCGAGTGGCAGCTTTaGCTTCTTAAGGGCTTGCTT | + |
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Preference number: 4 (lower is better) Translates to: FKAVTCILGHTMEITHLKTEWQL*LLKGLL Trigger: AAGCAAGCCCTTAAGAAGTCAAAGCTGCCACTCGGT...CTTTAAGTGTGTAATTTCCATCGTATGTCCTAAAATGCATGTGACAGCTTTGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027338.4 |
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| CDS-3UTR GCA 90 bp | CATTTGCTATTCAAAGCTGTCACATGCATTTTAGGACATACGATGGAAATTACAGACTTCTTAAGGGCTTaGTTCGCAGGCTCAGGCTTT | + |
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Preference number: 4 (lower is better) Translates to: HLLFKAVTCILGHTMEITDFLRA*FAGSGF Trigger: AAAGCCTGAGCCTGCGAAGCAAGCCCTTAAGAAGTC...TGTAATTTCCATCGTATGTCCTAAAATGCATGTGACAGCTTTGAATAGCAAATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027338.4 |
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| CDS-3UTR GCA 90 bp | GTCACATGCATTTTAGGACATACGATGGAAATTACACACTTAAAGGACACAGAAAAGAGATGGTCTTGCTaGTCTCCAGACGAAAGTCAT | + |
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Preference number: 4 (lower is better) Translates to: VTCILGHTMEITHLKDTEKRWSC*SPDESH Trigger: ATGACTTTCGTCTGGAGAGCAGCAAGACCATCTCTT...TTCTGTGTCCTTTAAGTGTGTAATTTCCATCGTATGTCCTAAAATGCATGTGAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027338.4 |
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| CDS-3UTR GCA 90 bp | TTCAAAGCTGTCACATGCATTTTAGGACATACGATGGAAATTACACACTTAAAGCAGAAGAGATGGTCTTaGTGCTCTCCAGACGAAAGT | + |
|
Preference number: 4 (lower is better) Translates to: FKAVTCILGHTMEITHLKQKRWS*CSPDES Trigger: ACTTTCGTCTGGAGAGCAGCAAGACCATCTCTTCTG...CTTTAAGTGTGTAATTTCCATCGTATGTCCTAAAATGCATGTGACAGCTTTGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027338.4 |
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| CDS-3UTR CCA 90 bp | GTCACATGCATTTTAGGACATACGATGGAAATTACACACTTAAAGGACACAGAAATGATTCAGAAGAGATaGTCTTGCTGCTCTCCAGAC | + |
|
Preference number: 4 (lower is better) Translates to: VTCILGHTMEITHLKDTEMIQKR*SCCSPD Trigger: GTCTGGAGAGCAGCAAGACCATCTCTTCTGAATCAT...TTCTGTGTCCTTTAAGTGTGTAATTTCCATCGTATGTCCTAAAATGCATGTGAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027338.4 |
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| CDS CCA 90 bp | TCGTGTAGGCTCCGGGCCCTTGGGTCCACCTTTTTCTTTGGTAACTaGATTTACATCATCCGGAAACTTCTGCAGTGGCTCTCTCTCTTC | + |
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Preference number: 5 (lower is better) Translates to: SCRLRALGSTFFFGN*IYIIRKLLQWLSLF Trigger: GAAGAGAGAGAGCCACTGCAGAAGTTTCCGGATGATGTAAATCCAGTTACCAAAGAAAAAGGTGGACCCAAGGGCCCGGAGCCTACACGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027338.4 |
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| CDS GCA 90 bp | CCACCTTTTTCTTTGGTAACTGGATTTACATCATCCGGAAACTTCTaGAGTGGCTCTCTCTCTTCGGGTGAATCCTCCAGTGAGTCAAAA | + |
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Preference number: 5 (lower is better) Translates to: PPFSLVTGFTSSGNF*SGSLSSGESSSESK Trigger: TTTTGACTCACTGGAGGATTCACCCGAAGAGAGAGAGCCACTGCAGAAGTTTCCGGATGATGTAAATCCAGTTACCAAAGAAAAAGGTGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027338.4 |
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| CDS-3UTR CAA 90 bp | TTCAAAGCTGTCACATGCATTTTAGGACATACGATGGAAATTACACACTTAAAGGTAGGCTCCGGGCCCTaGGGTCCACCTTTTTCTTTG | + |
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Preference number: 5 (lower is better) Translates to: FKAVTCILGHTMEITHLKVGSGP*GPPFSL Trigger: CAAAGAAAAAGGTGGACCCAAGGGCCCGGAGCCTAC...CTTTAAGTGTGTAATTTCCATCGTATGTCCTAAAATGCATGTGACAGCTTTGAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027338.4 |
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| CDS-3UTR CAA 90 bp | TTCAAAGCTGTCACATGCATTTTAGGACATACGATGGAAATTACACACTTAAAGTCAGAAGAGATGGTCTaGCTGCTCTCCAGACGAAAG | + |
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Preference number: 5 (lower is better) Translates to: FKAVTCILGHTMEITHLKSEEMV*LLSRRK Trigger: CTTTCGTCTGGAGAGCAGCAAGACCATCTCTTCTGA...CTTTAAGTGTGTAATTTCCATCGTATGTCCTAAAATGCATGTGACAGCTTTGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027338.4 |
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| CDS CAA 90 bp | CGTCCCTTCCGTTCCCAGTCTCCATATCGTGTAGGCTCCGGGCCCTaGGGTCCACCTTTTTCTTTGGTAACTGGATTTACATCATCCGGA | + |
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Preference number: 6 (lower is better) Translates to: RPFRSQSPYRVGSGP*GPPFSLVTGFTSSG Trigger: TCCGGATGATGTAAATCCAGTTACCAAAGAAAAAGGTGGACCCAAGGGCCCGGAGCCTACACGATATGGAGACTGGGAACGGAAGGGACG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027338.4 |
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| CDS CAA 72 bp | CGTTCCCAGTCTCCATATCGTGTAGGCTCCGGGCCCTaGGGTCCACCTTTTTCTTTGGTAACTGGATTTACA | + |
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Preference number: 6 (lower is better) Translates to: RSQSPYRVGSGP*GPPFSLVTGFT Trigger: TGTAAATCCAGTTACCAAAGAAAAAGGTGGACCCAAGGGCCCGGAGCCTACACGATATGGAGACTGGGAACG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027338.4 |
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