Pregenerated sensors for SDHAF3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000042505Ensembl transcript IDs: ENSMUST00000040826.6
Found 88 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCTCCAGAGAAAGTTCACTGTGGAATTCAGATCCTAAGGGTGACCTaGTCTGTGTTGAGCCACCATGGTGAAAGACATCCTGTTCCAGGA | + |
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Preference number: 1 (lower is better) Translates to: PPEKVHCGIQILRVT*SVLSHHGERHPVPG Trigger: TCCTGGAACAGGATGTCTTTCACCATGGTGGCTCAACACAGATCAGGTCACCCTTAGGATCTGAATTCCACAGTGAACTTTCTCTGGAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
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| 3UTR TCA 90 bp | TCCAAACACTTTCTGAGAACTATAAAGGAGAAAGAAAGGAGGCAATaGGTTGGGCCACCAGGACTGTTCCAGGACTTGGCCTGTACTCAC | + |
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Preference number: 1 (lower is better) Translates to: SKHFLRTIKEKERRQ*VGPPGLFQDLACTH Trigger: GTGAGTACAGGCCAAGTCCTGGAACAGTCCTGGTGGCCCAACTCATTGCCTCCTTTCTTTCTCCTTTATAGTTCTCAGAAAGTGTTTGGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
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| 3UTR TCA 90 bp | ATGGTCTTAAGATTCAAAACCAGCAAGTCCAAAGCTCAGAAGACCTaGCCAGTGTGGACTCTCTCATCTACCCATACCTGGCTTACACTG | + |
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Preference number: 1 (lower is better) Translates to: MVLRFKTSKSKAQKT*PVWTLSSTHTWLTL Trigger: CAGTGTAAGCCAGGTATGGGTAGATGAGAGAGTCCACACTGGTCAGGTCTTCTGAGCTTTGGACTTGCTGGTTTTGAATCTTAAGACCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
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| 3UTR CCA 90 bp | AGACTTTCGTCTGGTCTGTGGTCCATGCTGTCACTAAAAACCATGTaGAAGTCCATGATCTGTGCTCCTGTTGACTGTAAAGGGCAAAGA | + |
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Preference number: 1 (lower is better) Translates to: RLSSGLWSMLSLKTM*KSMICAPVDCKGQR Trigger: TCTTTGCCCTTTACAGTCAACAGGAGCACAGATCATGGACTTCCACATGGTTTTTAGTGACAGCATGGACCACAGACCAGACGAAAGTCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
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| 3UTR GCA 90 bp | ATGTGGCAGCCAGGAAAGCAAGTTTCTAATGCAAGGGTGGAAATGTaGCAGGCTTTAAAGTCTGGACCATACATTGGGGTTTTTGGTTTG | + |
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Preference number: 1 (lower is better) Translates to: MWQPGKQVSNARVEM*QALKSGPYIGVFGL Trigger: CAAACCAAAAACCCCAATGTATGGTCCAGACTTTAAAGCCTGGCACATTTCCACCCTTGCATTAGAAACTTGCTTTCCTGGCTGCCACAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
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| 3UTR TCA 90 bp | GTGTACGGTTATAATGGTACTGGCTTCAAGGAAAAACGATTTCCTTaGGATCTTCCACTTCAGGTGGGCTCTGAGCTTTGTGTTTGGCAT | + |
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Preference number: 1 (lower is better) Translates to: VYGYNGTGFKEKRFP*DLPLQVGSELCVWH Trigger: ATGCCAAACACAAAGCTCAGAGCCCACCTGAAGTGGAAGATCTCAAGGAAATCGTTTTTCCTTGAAGCCAGTACCATTATAACCGTACAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
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| 3UTR GCA 90 bp | ACAACAGAAATGGCTATCAAGAGAGGCTGGGATCTAGGACTACTGTaGAATCTACCAGACGGTGTTATCAGAATTCATAATGAGGAGGAC | + |
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Preference number: 1 (lower is better) Translates to: TTEMAIKRGWDLGLL*NLPDGVIRIHNEED Trigger: GTCCTCCTCATTATGAATTCTGATAACACCGTCTGGTAGATTGCACAGTAGTCCTAGATCCCAGCCTCTCTTGATAGCCATTTCTGTTGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
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| 3UTR TCA 90 bp | ACAAGTGTCACAGGCAGTCAATCTATAGAGCCTATCTTTCCTCTCTaGTCTACTCCTTTCAAGACCAGATCTCCTACTGAACCTGACATT | + |
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Preference number: 1 (lower is better) Translates to: TSVTGSQSIEPIFPL*STPFKTRSPTEPDI Trigger: AATGTCAGGTTCAGTAGGAGATCTGGTCTTGAAAGGAGTAGATCAGAGAGGAAAGATAGGCTCTATAGATTGACTGCCTGTGACACTTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
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| 3UTR TCA 90 bp | CAAGGAAAAACGATTTCCTTGAGATCTTCCACTTCAGGTGGGCTCTaGGCTTTGTGTTTGGCATACACTGTGTTCAGGGACAATCAAAAT | + |
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Preference number: 1 (lower is better) Translates to: QGKTISLRSSTSGGL*ALCLAYTVFRDNQN Trigger: ATTTTGATTGTCCCTGAACACAGTGTATGCCAAACACAAAGCTCAGAGCCCACCTGAAGTGGAAGATCTCAAGGAAATCGTTTTTCCTTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
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| 3UTR TCA 90 bp | TTTGTTTTGTTTGAGCAAATCAAGTTCCAAGGCCAGCGAGATGGATaGGGGAGAGAGAAGTTACACACTTACTTACAACAGAAATGGCTA | + |
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Preference number: 1 (lower is better) Translates to: FVLFEQIKFQGQRDG*GREKLHTYLQQKWL Trigger: TAGCCATTTCTGTTGTAAGTAAGTGTGTAACTTCTCTCTCCCTCATCCATCTCGCTGGCCTTGGAACTTGATTTGCTCAAACAAAACAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
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| 3UTR TCA 90 bp | GGATACCGGCAACTCGAGTGTTTCTTTCTATTCCACCTAAAAGTTTaGGTTTCTAGTAGGAAAGGTGATTACCTGTATAGAGTCCACCAT | + |
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Preference number: 1 (lower is better) Translates to: GYRQLECFFLFHLKV*VSSRKGDYLYRVHH Trigger: ATGGTGGACTCTATACAGGTAATCACCTTTCCTACTAGAAACTCAAACTTTTAGGTGGAATAGAAAGAAACACTCGAGTTGCCGGTATCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
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| 3UTR GCA 90 bp | TTGTGTTTGGCATACACTGTGTTCAGGGACAATCAAAATCAAACCTaGAACACACTTGTGCAGAAGCTTCAGCTTTCTACTTGTAGAAGT | + |
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Preference number: 1 (lower is better) Translates to: LCLAYTVFRDNQNQT*NTLVQKLQLSTCRS Trigger: ACTTCTACAAGTAGAAAGCTGAAGCTTCTGCACAAGTGTGTTGCAGGTTTGATTTTGATTGTCCCTGAACACAGTGTATGCCAAACACAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
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| 3UTR GCA 90 bp | AAGAGGAGCCAGGCTGCTCTAAATGTATCCTTTTGTTTCAAGATTTaGATCACCAATAGATTCCAAACACTTTCTGAGAACTATAAAGGA | + |
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Preference number: 1 (lower is better) Translates to: KRSQAALNVSFCFKI*ITNRFQTLSENYKG Trigger: TCCTTTATAGTTCTCAGAAAGTGTTTGGAATCTATTGGTGATGCAAATCTTGAAACAAAAGGATACATTTAGAGCAGCCTGGCTCCTCTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
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| 3UTR TCA 90 bp | TGCAAATGTTTTGTTCTGTATTGCACATGTGTTAGTCCCAACACCTaGACTTCCTTGTGGTCTGTCTCAGTTATTTATGGGTTTAATTTA | + |
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Preference number: 1 (lower is better) Translates to: CKCFVLYCTCVSPNT*TSLWSVSVIYGFNL Trigger: TAAATTAAACCCATAAATAACTGAGACAGACCACAAGGAAGTTCAGGTGTTGGGACTAACACATGTGCAATACAGAACAAAACATTTGCA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
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| 3UTR CCA 90 bp | GTTGAGAAGTCAGGTAAAAGTGTGACTGGAAACTTTACTGCACATTaGTCATTATATCTGCTCACTGGATCTTTAATCACAATTTGTACT | + |
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Preference number: 1 (lower is better) Translates to: VEKSGKSVTGNFTAH*SLYLLTGSLITICT Trigger: AGTACAAATTGTGATTAAAGATCCAGTGAGCAGATATAATGACCAATGTGCAGTAAAGTTTCCAGTCACACTTTTACCTGACTTCTCAAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
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| 3UTR-3UTR GCA 90 bp | AGCTCAGAAGACCTGACCAGTGTGGACTCTCTCATCTACCCATACCTGGCTTACTGCCTTCTGGCAGCGTaGAGGTGGGGAAGGACTGTT | + |
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Preference number: 2 (lower is better) Translates to: SSEDLTSVDSLIYPYLAYCLLAA*RWGRTV Trigger: AACAGTCCTTCCCCACCTGCACGCTGCCAGAAGGCA...GTAAGCCAGGTATGGGTAGATGAGAGAGTCCACACTGGTCAGGTCTTCTGAGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
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| 3UTR-3UTR CCA 90 bp | CTCACGGGCATGGGTCCTCTGGTGGGTAGCCCATGTGGCAGCCAGGAAAGCAAGCCAGGCTTTAAAGTCTaGACCATACATTGGGGTTTT | + |
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Preference number: 2 (lower is better) Translates to: LTGMGPLVGSPCGSQESKPGFKV*TIHWGF Trigger: AAAACCCCAATGTATGGTCCAGACTTTAAAGCCTGG...CTTGCTTTCCTGGCTGCCACATGGGCTACCCACCAGAGGACCCATGCCCGTGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
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| 3UTR-3UTR CCA 90 bp | CTCACGGGCATGGGTCCTCTGGTGGGTAGCCCATGTGGCAGCCAGGAAAGCAAGCTACTAAAGGAGAAATaGTGGGACTTTCAGAATCAC | + |
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Preference number: 2 (lower is better) Translates to: LTGMGPLVGSPCGSQESKLLKEK*WDFQNH Trigger: GTGATTCTGAAAGTCCCACCATTTCTCCTTTAGTAG...CTTGCTTTCCTGGCTGCCACATGGGCTACCCACCAGAGGACCCATGCCCGTGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
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| 3UTR-3UTR CCA 90 bp | CTCACGGGCATGGGTCCTCTGGTGGGTAGCCCATGTGGCAGCCAGGAAAGCAAGCTAAAGGAGAAATGGTaGGACTTTCAGAATCACAAT | + |
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Preference number: 2 (lower is better) Translates to: LTGMGPLVGSPCGSQESKLKEKW*DFQNHN Trigger: ATTGTGATTCTGAAAGTCCCACCATTTCTCCTTTAG...CTTGCTTTCCTGGCTGCCACATGGGCTACCCACCAGAGGACCCATGCCCGTGAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
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| 3UTR-3UTR CCA 90 bp | AGCTCAGAAGACCTGACCAGTGTGGACTCTCTCATCTACCCATACCTGGCTTACCTGGCAGCGTGCAGGTaGGGAAGGACTGTTTTCTTT | + |
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Preference number: 2 (lower is better) Translates to: SSEDLTSVDSLIYPYLAYLAACR*GRTVFF Trigger: AAAGAAAACAGTCCTTCCCCACCTGCACGCTGCCAG...GTAAGCCAGGTATGGGTAGATGAGAGAGTCCACACTGGTCAGGTCTTCTGAGCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
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| 3UTR-3UTR CCA 90 bp | TTGCAATGGCCTGCATCACTGCCCAAGTATTCAGAAGGTTTTCTTCTTCCTTACTGCTGCTGGCTGAGCTaGGTGGTCCAGTCTCCCTCA | + |
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Preference number: 2 (lower is better) Translates to: LQWPASLPKYSEGFLLPYCCWLS*VVQSPS Trigger: TGAGGGAGACTGGACCACCCAGCTCAGCCAGCAGCA...GTAAGGAAGAAGAAAACCTTCTGAATACTTGGGCAGTGATGCAGGCCATTGCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
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| 3UTR-3UTR GCA 90 bp | AGCTCAGAAGACCTGACCAGTGTGGACTCTCTCATCTACCCATACCTGGCTTACGAACTCCGGTCCTCATaGTCTCACAGCAAACACTTT | + |
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Preference number: 2 (lower is better) Translates to: SSEDLTSVDSLIYPYLAYELRSS*SHSKHF Trigger: AAAGTGTTTGCTGTGAGAGCATGAGGACCGGAGTTC...GTAAGCCAGGTATGGGTAGATGAGAGAGTCCACACTGGTCAGGTCTTCTGAGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
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| 3UTR-3UTR TCA 90 bp | GTCTTCCCAAATGGTTTACATTTCTCAAGTACTTATTGGAGACCACTTTACACAGGATCTGCTGCTGGCTaGGCTGGGTGGTCCAGTCTC | + |
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Preference number: 2 (lower is better) Translates to: VFPNGLHFSSTYWRPLYTGSAAG*AGWSSL Trigger: GAGACTGGACCACCCAGCTCAGCCAGCAGCAGATCC...TGTGTAAAGTGGTCTCCAATAAGTACTTGAGAAATGTAAACCATTTGGGAAGAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
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| 3UTR-3UTR GCA 90 bp | GTTCCAAGGCCAGCGAGATGGATGAGGGAGAGAGAAGTTACACACTTACTTACAGGATGTGCCTGTCTCTaGTTTCTCATTAAAGCCTGC | + |
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Preference number: 2 (lower is better) Translates to: VPRPARWMREREVTHLLTGCACL*FLIKAC Trigger: GCAGGCTTTAATGAGAAAGCAGAGACAGGCACATCC...TGTAAGTAAGTGTGTAACTTCTCTCTCCCTCATCCATCTCGCTGGCCTTGGAAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
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| 3UTR-3UTR CCA 90 bp | CTAAAAACCATGTGGAAGTCCATGATCTGTGCTCCTGTTGACTGTAAAGGGCAACCAAGGCCAGCGAGATaGATGAGGGAGAGAGAAGTT | + |
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Preference number: 2 (lower is better) Translates to: LKTMWKSMICAPVDCKGQPRPAR*MREREV Trigger: AACTTCTCTCTCCCTCATCCATCTCGCTGGCCTTGG...TTGCCCTTTACAGTCAACAGGAGCACAGATCATGGACTTCCACATGGTTTTTAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
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| 3UTR-3UTR TCA 90 bp | TTGCAATGGCCTGCATCACTGCCCAAGTATTCAGAAGGTTTTCTTCTTCCTTACACTTCAGGTGGGCTCTaGGCTTTGTGTTTGGCATAC | + |
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Preference number: 2 (lower is better) Translates to: LQWPASLPKYSEGFLLPYTSGGL*ALCLAY Trigger: GTATGCCAAACACAAAGCTCAGAGCCCACCTGAAGT...GTAAGGAAGAAGAAAACCTTCTGAATACTTGGGCAGTGATGCAGGCCATTGCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
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| 3UTR-3UTR GCA 90 bp | GACATTTGCAGTGGTATCAATGACTGCAGATGCATAGTTGAGAAGAGACATAGGTATTTATGGATCTGCTaGTGGCTGAGCTGGGTGGTC | + |
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Preference number: 2 (lower is better) Translates to: DICSGINDCRCIVEKRHRYLWIC*WLSWVV Trigger: GACCACCCAGCTCAGCCAGCAGCAGATCCATAAATA...CCTATGTCTCTTCTCAACTATGCATCTGCAGTCATTGATACCACTGCAAATGTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
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| 3UTR-3UTR GCA 90 bp | AGCTCAGAAGACCTGACCAGTGTGGACTCTCTCATCTACCCATACCTGGCTTACATCAATGACTGCAGATaGATAGTTGAGAAGAGACAT | + |
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Preference number: 2 (lower is better) Translates to: SSEDLTSVDSLIYPYLAYINDCR*IVEKRH Trigger: ATGTCTCTTCTCAACTATGCATCTGCAGTCATTGAT...GTAAGCCAGGTATGGGTAGATGAGAGAGTCCACACTGGTCAGGTCTTCTGAGCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
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| 3UTR-3UTR GCA 90 bp | TTGCAATGGCCTGCATCACTGCCCAAGTATTCAGAAGGTTTTCTTCTTCCTTACGATCTAGGACTACTGTaGAATCTACCAGACGGTGTT | + |
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Preference number: 2 (lower is better) Translates to: LQWPASLPKYSEGFLLPYDLGLL*NLPDGV Trigger: AACACCGTCTGGTAGATTGCACAGTAGTCCTAGATC...GTAAGGAAGAAGAAAACCTTCTGAATACTTGGGCAGTGATGCAGGCCATTGCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
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| 3UTR-3UTR TCA 90 bp | TCCCAAATGGTTTACATTTCTCAAGTACTTATTGGAGACCACTTTACACAAACTGGCCAGCGAGATGGATaGGGGAGAGAGAAGTTACAC | + |
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Preference number: 2 (lower is better) Translates to: SQMVYISQVLIGDHFTQTGQRDG*GREKLH Trigger: GTGTAACTTCTCTCTCCCTCATCCATCTCGCTGGCC...AGTTTGTGTAAAGTGGTCTCCAATAAGTACTTGAGAAATGTAAACCATTTGGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
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| 3UTR-3UTR GCA 90 bp | GTCTTCCCAAATGGTTTACATTTCTCAAGTACTTATTGGAGACCACTTTACACACTTCACAGGAAGGGATaGACAAGCTGTTCTCTGCCC | + |
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Preference number: 2 (lower is better) Translates to: VFPNGLHFSSTYWRPLYTLHRKG*TSCSLP Trigger: GGGCAGAGAACAGCTTGTGCATCCCTTCCTGTGAAG...TGTGTAAAGTGGTCTCCAATAAGTACTTGAGAAATGTAAACCATTTGGGAAGAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
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| 3UTR-3UTR CCA 90 bp | TTGCAATGGCCTGCATCACTGCCCAAGTATTCAGAAGGTTTTCTTCTTCCTTACTACTTACAACAGAAATaGCTATCAAGAGAGGCTGGG | + |
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Preference number: 2 (lower is better) Translates to: LQWPASLPKYSEGFLLPYYLQQK*LSREAG Trigger: CCCAGCCTCTCTTGATAGCCATTTCTGTTGTAAGTA...GTAAGGAAGAAGAAAACCTTCTGAATACTTGGGCAGTGATGCAGGCCATTGCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
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| 3UTR-3UTR CCA 90 bp | CTAAAAACCATGTGGAAGTCCATGATCTGTGCTCCTGTTGACTGTAAAGGGCAAGTCTGGACCATACATTaGGGTTTTTGGTTTGTTTGT | + |
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Preference number: 2 (lower is better) Translates to: LKTMWKSMICAPVDCKGQVWTIH*GFWFVC Trigger: ACAAACAAACCAAAAACCCCAATGTATGGTCCAGAC...TTGCCCTTTACAGTCAACAGGAGCACAGATCATGGACTTCCACATGGTTTTTAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
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| 3UTR-3UTR TCA 90 bp | ATTTCTCTGAGTTCTATTTTGGTCTTTCAAACGTGTGATGCTTTATTTCCGACACCTATCTTTCCTCTCTaGTCTACTCCTTTCAAGACC | + |
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Preference number: 2 (lower is better) Translates to: ISLSSILVFQTCDALFPTPIFPL*STPFKT Trigger: GGTCTTGAAAGGAGTAGATCAGAGAGGAAAGATAGG...TGTCGGAAATAAAGCATCACACGTTTGAAAGACCAAAATAGAACTCAGAGAAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
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| 3UTR-3UTR TCA 90 bp | GTCTTCCCAAATGGTTTACATTTCTCAAGTACTTATTGGAGACCACTTTACACAGAAAAACGATTTCCTTaGGATCTTCCACTTCAGGTG | + |
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Preference number: 2 (lower is better) Translates to: VFPNGLHFSSTYWRPLYTEKRFP*DLPLQV Trigger: CACCTGAAGTGGAAGATCTCAAGGAAATCGTTTTTC...TGTGTAAAGTGGTCTCCAATAAGTACTTGAGAAATGTAAACCATTTGGGAAGAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
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| 3UTR-3UTR CCA 90 bp | TCCCAAATGGTTTACATTTCTCAAGTACTTATTGGAGACCACTTTACACAAACTAGCACTAGGCAAATGTaGAACGTTAAACACACAGGG | + |
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Preference number: 2 (lower is better) Translates to: SQMVYISQVLIGDHFTQTSTRQM*NVKHTG Trigger: CCCTGTGTGTTTAACGTTCCACATTTGCCTAGTGCT...AGTTTGTGTAAAGTGGTCTCCAATAAGTACTTGAGAAATGTAAACCATTTGGGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
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| 3UTR-3UTR CCA 90 bp | ATTTCTCTGAGTTCTATTTTGGTCTTTCAAACGTGTGATGCTTTATTTCCGACACAAAGCATCTTTTCTTaGTTACTAGTAACACCAGAG | + |
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Preference number: 2 (lower is better) Translates to: ISLSSILVFQTCDALFPTQSIFS*LLVTPE Trigger: CTCTGGTGTTACTAGTAACCAAGAAAAGATGCTTTG...TGTCGGAAATAAAGCATCACACGTTTGAAAGACCAAAATAGAACTCAGAGAAAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
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| 3UTR CCA 72 bp | TGGCTGAGCTGGGTGGTCCAGTCTCCCTCACGGGCATaGGTCCTCTGGTGGGTAGCCCATGTGGCAGCCAGG | + |
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Preference number: 3 (lower is better) Translates to: WLSWVVQSPSRA*VLWWVAHVAAR Trigger: CCTGGCTGCCACATGGGCTACCCACCAGAGGACCCATGCCCGTGAGGGAGACTGGACCACCCAGCTCAGCCA 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
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| 3UTR TCA 72 bp | GAACCTGACATTCACTGCTTCAGCTACACTGGCTGGTaGGCCACGGGGATGTGCCTGTCTCTGCTTTCTCAT | + |
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Preference number: 3 (lower is better) Translates to: EPDIHCFSYTGW*ATGMCLSLLSH Trigger: ATGAGAAAGCAGAGACAGGCACATCCCCGTGGCTCACCAGCCAGTGTAGCTGAAGCAGTGAATGTCAGGTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
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| 3UTR GCA 72 bp | ACACTGGCTGGTGAGCCACGGGGATGTGCCTGTCTCTaGTTTCTCATTAAAGCCTGCATCTCCATGTCTGCT | + |
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Preference number: 3 (lower is better) Translates to: TLAGEPRGCACL*FLIKACISMSA Trigger: AGCAGACATGGAGATGCAGGCTTTAATGAGAAAGCAGAGACAGGCACATCCCCGTGGCTCACCAGCCAGTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
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| 3UTR TCA 72 bp | AATTTCAGTAGTCTTATTTATGGATCTGCTGCTGGCTaGGCTGGGTGGTCCAGTCTCCCTCACGGGCATGGG | + |
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Preference number: 3 (lower is better) Translates to: NFSSLIYGSAAG*AGWSSLPHGHG Trigger: CCCATGCCCGTGAGGGAGACTGGACCACCCAGCTCAGCCAGCAGCAGATCCATAAATAAGACTACTGAAATT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
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| 3UTR TCA 72 bp | CCTAAGGGTGACCTGATCTGTGTTGAGCCACCATGGTaGAAGACATCCTGTTCCAGGAGGGATAGAAAGAGG | + |
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Preference number: 3 (lower is better) Translates to: PKGDLICVEPPW*KTSCSRRDRKR Trigger: CCTCTTTCTATCCCTCCTGGAACAGGATGTCTTTCACCATGGTGGCTCAACACAGATCAGGTCACCCTTAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
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| 3UTR GCA 72 bp | GTTAAACACACAGGGTTGCTCCTTCACAGGAAGGGATaGACAAGCTGTTCTCTGCCCAGCAGGTTAATAGCC | + |
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Preference number: 3 (lower is better) Translates to: VKHTGLLLHRKG*TSCSLPSRLIA Trigger: GGCTATTAACCTGCTGGGCAGAGAACAGCTTGTGCATCCCTTCCTGTGAAGGAGCAACCCTGTGTGTTTAAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
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| 3UTR GCA 72 bp | GCACTAGGCAAATGTGGAACGTTAAACACACAGGGTTaGTCCTTCACAGGAAGGGATGCACAAGCTGTTCTC | + |
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Preference number: 3 (lower is better) Translates to: ALGKCGTLNTQG*SFTGRDAQAVL Trigger: GAGAACAGCTTGTGCATCCCTTCCTGTGAAGGAGCAACCCTGTGTGTTTAACGTTCCACATTTGCCTAGTGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
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| 3UTR TCA 72 bp | ACGATTTCCTTGAGATCTTCCACTTCAGGTGGGCTCTaGGCTTTGTGTTTGGCATACACTGTGTTCAGGGAC | + |
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Preference number: 3 (lower is better) Translates to: TISLRSSTSGGL*ALCLAYTVFRD Trigger: GTCCCTGAACACAGTGTATGCCAAACACAAAGCTCAGAGCCCACCTGAAGTGGAAGATCTCAAGGAAATCGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
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| 3UTR TCA 72 bp | TTTCTGAGAACTATAAAGGAGAAAGAAAGGAGGCAATaGGTTGGGCCACCAGGACTGTTCCAGGACTTGGCC | + |
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Preference number: 3 (lower is better) Translates to: FLRTIKEKERRQ*VGPPGLFQDLA Trigger: GGCCAAGTCCTGGAACAGTCCTGGTGGCCCAACTCATTGCCTCCTTTCTTTCTCCTTTATAGTTCTCAGAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
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| 3UTR TCA 72 bp | AGATTCAAAACCAGCAAGTCCAAAGCTCAGAAGACCTaGCCAGTGTGGACTCTCTCATCTACCCATACCTGG | + |
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Preference number: 3 (lower is better) Translates to: RFKTSKSKAQKT*PVWTLSSTHTW Trigger: CCAGGTATGGGTAGATGAGAGAGTCCACACTGGTCAGGTCTTCTGAGCTTTGGACTTGCTGGTTTTGAATCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
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| 3UTR GCA 72 bp | CCAGGAAAGCAAGTTTCTAATGCAAGGGTGGAAATGTaGCAGGCTTTAAAGTCTGGACCATACATTGGGGTT | + |
|
Preference number: 3 (lower is better) Translates to: PGKQVSNARVEM*QALKSGPYIGV Trigger: AACCCCAATGTATGGTCCAGACTTTAAAGCCTGGCACATTTCCACCCTTGCATTAGAAACTTGCTTTCCTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
||
| 3UTR CCA 72 bp | TCTGGTCTGTGGTCCATGCTGTCACTAAAAACCATGTaGAAGTCCATGATCTGTGCTCCTGTTGACTGTAAA | + |
|
Preference number: 3 (lower is better) Translates to: SGLWSMLSLKTM*KSMICAPVDCK Trigger: TTTACAGTCAACAGGAGCACAGATCATGGACTTCCACATGGTTTTTAGTGACAGCATGGACCACAGACCAGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
||
| 3UTR TCA 72 bp | TTTGAGCAAATCAAGTTCCAAGGCCAGCGAGATGGATaGGGGAGAGAGAAGTTACACACTTACTTACAACAG | + |
|
Preference number: 3 (lower is better) Translates to: FEQIKFQGQRDG*GREKLHTYLQQ Trigger: CTGTTGTAAGTAAGTGTGTAACTTCTCTCTCCCTCATCCATCTCGCTGGCCTTGGAACTTGATTTGCTCAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
||
| 3UTR CCA 72 bp | AGGAAAAACGATTTCCTTGAGATCTTCCACTTCAGGTaGGCTCTGAGCTTTGTGTTTGGCATACACTGTGTT | + |
|
Preference number: 3 (lower is better) Translates to: RKNDFLEIFHFR*ALSFVFGIHCV Trigger: AACACAGTGTATGCCAAACACAAAGCTCAGAGCCCACCTGAAGTGGAAGATCTCAAGGAAATCGTTTTTCCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
||
| 3UTR-3UTR CAA 90 bp | TTGCAATGGCCTGCATCACTGCCCAAGTATTCAGAAGGTTTTCTTCTTCCTTACAGTCTGGACCATACATaGGGGTTTTTGGTTTGTTTG | + |
|
Preference number: 3 (lower is better) Translates to: LQWPASLPKYSEGFLLPYSLDHT*GFLVCL Trigger: CAAACAAACCAAAAACCCCAATGTATGGTCCAGACT...GTAAGGAAGAAGAAAACCTTCTGAATACTTGGGCAGTGATGCAGGCCATTGCAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
||
| 3UTR-3UTR CAA 90 bp | TTGCAATGGCCTGCATCACTGCCCAAGTATTCAGAAGGTTTTCTTCTTCCTTACGGAAAAACGATTTCCTaGAGATCTTCCACTTCAGGT | + |
|
Preference number: 3 (lower is better) Translates to: LQWPASLPKYSEGFLLPYGKTIS*RSSTSG Trigger: ACCTGAAGTGGAAGATCTCAAGGAAATCGTTTTTCC...GTAAGGAAGAAGAAAACCTTCTGAATACTTGGGCAGTGATGCAGGCCATTGCAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
||
| 3UTR TCA 72 bp | ACAGGCAGTCAATCTATAGAGCCTATCTTTCCTCTCTaGTCTACTCCTTTCAAGACCAGATCTCCTACTGAA | + |
|
Preference number: 3 (lower is better) Translates to: TGSQSIEPIFPL*STPFKTRSPTE Trigger: TTCAGTAGGAGATCTGGTCTTGAAAGGAGTAGATCAGAGAGGAAAGATAGGCTCTATAGATTGACTGCCTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
||
| 3UTR TCA 72 bp | TATAATGGTACTGGCTTCAAGGAAAAACGATTTCCTTaGGATCTTCCACTTCAGGTGGGCTCTGAGCTTTGT | + |
|
Preference number: 3 (lower is better) Translates to: YNGTGFKEKRFP*DLPLQVGSELC Trigger: ACAAAGCTCAGAGCCCACCTGAAGTGGAAGATCTCAAGGAAATCGTTTTTCCTTGAAGCCAGTACCATTATA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
||
| 3UTR GCA 72 bp | ATGGCTATCAAGAGAGGCTGGGATCTAGGACTACTGTaGAATCTACCAGACGGTGTTATCAGAATTCATAAT | + |
|
Preference number: 3 (lower is better) Translates to: MAIKRGWDLGLL*NLPDGVIRIHN Trigger: ATTATGAATTCTGATAACACCGTCTGGTAGATTGCACAGTAGTCCTAGATCCCAGCCTCTCTTGATAGCCAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
||
| 3UTR TCA 72 bp | TTTGTTCTGTATTGCACATGTGTTAGTCCCAACACCTaGACTTCCTTGTGGTCTGTCTCAGTTATTTATGGG | + |
|
Preference number: 3 (lower is better) Translates to: FVLYCTCVSPNT*TSLWSVSVIYG Trigger: CCCATAAATAACTGAGACAGACCACAAGGAAGTTCAGGTGTTGGGACTAACACATGTGCAATACAGAACAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
||
| 3UTR GCA 72 bp | GGGCAAAGAAGTGACATTTGCAGTGGTATCAATGACTaGAGATGCATAGTTGAGAAGAGACATAGGTTTTTG | + |
|
Preference number: 3 (lower is better) Translates to: GQRSDICSGIND*RCIVEKRHRFL Trigger: CAAAAACCTATGTCTCTTCTCAACTATGCATCTGCAGTCATTGATACCACTGCAAATGTCACTTCTTTGCCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
||
| 3UTR-3UTR CAA 90 bp | CTAAAAACCATGTGGAAGTCCATGATCTGTGCTCCTGTTGACTGTAAAGGGCAATCTCTGAGTTCTATTTaGGTCTTTCAAACGTGTGAT | + |
|
Preference number: 3 (lower is better) Translates to: LKTMWKSMICAPVDCKGQSLSSI*VFQTCD Trigger: ATCACACGTTTGAAAGACCAAAATAGAACTCAGAGA...TTGCCCTTTACAGTCAACAGGAGCACAGATCATGGACTTCCACATGGTTTTTAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
||
| 3UTR GCA 72 bp | CAGGCTGCTCTAAATGTATCCTTTTGTTTCAAGATTTaGATCACCAATAGATTCCAAACACTTTCTGAGAAC | + |
|
Preference number: 3 (lower is better) Translates to: QAALNVSFCFKI*ITNRFQTLSEN Trigger: GTTCTCAGAAAGTGTTTGGAATCTATTGGTGATGCAAATCTTGAAACAAAAGGATACATTTAGAGCAGCCTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
||
| 3UTR-3UTR CAA 90 bp | TCCCAAATGGTTTACATTTCTCAAGTACTTATTGGAGACCACTTTACACAAACTTCAAAGCATCTTTTCTaGGTTACTAGTAACACCAGA | + |
|
Preference number: 3 (lower is better) Translates to: SQMVYISQVLIGDHFTQTSKHLF*VTSNTR Trigger: TCTGGTGTTACTAGTAACCAAGAAAAGATGCTTTGA...AGTTTGTGTAAAGTGGTCTCCAATAAGTACTTGAGAAATGTAAACCATTTGGGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
||
| 3UTR TCA 72 bp | CAACTCGAGTGTTTCTTTCTATTCCACCTAAAAGTTTaGGTTTCTAGTAGGAAAGGTGATTACCTGTATAGA | + |
|
Preference number: 3 (lower is better) Translates to: QLECFFLFHLKV*VSSRKGDYLYR Trigger: TCTATACAGGTAATCACCTTTCCTACTAGAAACTCAAACTTTTAGGTGGAATAGAAAGAAACACTCGAGTTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
||
| 3UTR TCA 72 bp | TATTTCTCTGAGTTCTATTTTGGTCTTTCAAACGTGTaGTGCTTTATTTCCGACAGACAGTTTAACTACCTC | + |
|
Preference number: 3 (lower is better) Translates to: YFSEFYFGLSNV*CFISDRQFNYL Trigger: GAGGTAGTTAAACTGTCTGTCGGAAATAAAGCATCACACGTTTGAAAGACCAAAATAGAACTCAGAGAAATA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
||
| CDS-3UTR GCA 90 bp | CTGGCTGGTGAGCCACGGGGATGTGCCTGTCTCTGCTTTCTCATTAAAGCCTGCCTGTCCTCAGCTTGTTaGCACAGCACTGCTGCGTAC | + |
|
Preference number: 4 (lower is better) Translates to: LAGEPRGCACLCFLIKACLSSAC*HSTAAY Trigger: GTACGCAGCAGTGCTGTGGCAACAAGCTGAGGACAG...GCAGGCTTTAATGAGAAAGCAGAGACAGGCACATCCCCGTGGCTCACCAGCCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
||
| CDS-3UTR GCA 90 bp | CTGGCTGGTGAGCCACGGGGATGTGCCTGTCTCTGCTTTCTCATTAAAGCCTGCTCAGTGATACTAAACTaGCTATTGGGTTTAGTAGCC | + |
|
Preference number: 4 (lower is better) Translates to: LAGEPRGCACLCFLIKACSVILN*LLGLVA Trigger: GGCTACTAAACCCAATAGGCAGTTTAGTATCACTGA...GCAGGCTTTAATGAGAAAGCAGAGACAGGCACATCCCCGTGGCTCACCAGCCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
||
| CDS-3UTR CCA 90 bp | TGGCCTGCATCACTGCCCAAGTATTCAGAAGGTTTTCTTCTTCCTTACTCTAACTCGTCCTTCACGTACTaGTCACCCAGGGCTTTGAGG | + |
|
Preference number: 4 (lower is better) Translates to: WPASLPKYSEGFLLPYSNSSFTY*SPRALR Trigger: CCTCAAAGCCCTGGGTGACCAGTACGTGAAGGACGA...GTTAGAGTAAGGAAGAAGAAAACCTTCTGAATACTTGGGCAGTGATGCAGGCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
||
| 3UTR CAA 72 bp | AGCACTAGGCAAATGTGGAACGTTAAACACACAGGGTaGCTCCTTCACAGGAAGGGATGCACAAGCTGTTCT | + |
|
Preference number: 4 (lower is better) Translates to: STRQMWNVKHTG*LLHRKGCTSCS Trigger: AGAACAGCTTGTGCATCCCTTCCTGTGAAGGAGCAACCCTGTGTGTTTAACGTTCCACATTTGCCTAGTGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
||
| CDS-3UTR GCA 90 bp | CTAAAAACCATGTGGAAGTCCATGATCTGTGCTCCTGTTGACTGTAAAGGGCAACTTCTGGGAGAGAGGTaGCAAAACACGCTTTTCCAG | + |
|
Preference number: 4 (lower is better) Translates to: LKTMWKSMICAPVDCKGQLLGER*QNTLFQ Trigger: CTGGAAAAGCGTGTTTTGGCACCTCTCTCCCAGAAG...TTGCCCTTTACAGTCAACAGGAGCACAGATCATGGACTTCCACATGGTTTTTAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
||
| CDS-3UTR GCA 90 bp | CAAGTTTCTAATGCAAGGGTGGAAATGTGCCAGGCTTTAAAGTCTGGACCATACTCTTGCATCAGCTCTTaGAACTGTCCAATTTGCTCA | + |
|
Preference number: 4 (lower is better) Translates to: QVSNARVEMCQALKSGPYSCISS*NCPICS Trigger: TGAGCAAATTGGACAGTTGCAAGAGCTGATGCAAGA...GTATGGTCCAGACTTTAAAGCCTGGCACATTTCCACCCTTGCATTAGAAACTTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
||
| 3UTR CAA 72 bp | AGGACTGTTTTCTTTAAGGGACTGGCCACTGGGAGTTaGATCATGTACCAGTATGTGGGCAAAATAAATTGG | + |
|
Preference number: 4 (lower is better) Translates to: RTVFFKGLATGS*IMYQYVGKINW Trigger: CCAATTTATTTTGCCCACATACTGGTACATGATCAAACTCCCAGTGGCCAGTCCCTTAAAGAAAACAGTCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
||
| CDS-3UTR GCA 90 bp | CTAAAAACCATGTGGAAGTCCATGATCTGTGCTCCTGTTGACTGTAAAGGGCAATGCAACTGTCCAATTTaGTCATCACGAAAGTCATTG | + |
|
Preference number: 4 (lower is better) Translates to: LKTMWKSMICAPVDCKGQCNCPI*SSRKSL Trigger: CAATGACTTTCGTGATGAGCAAATTGGACAGTTGCA...TTGCCCTTTACAGTCAACAGGAGCACAGATCATGGACTTCCACATGGTTTTTAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
||
| CDS-3UTR TCA 90 bp | ATTTCTCTGAGTTCTATTTTGGTCTTTCAAACGTGTGATGCTTTATTTCCGACAACACGCTTTTCCAGTTaGGCTTTGTCTGCTGTCCTC | + |
|
Preference number: 4 (lower is better) Translates to: ISLSSILVFQTCDALFPTTRFSS*ALSAVL Trigger: GAGGACAGCAGACAAAGCTCAACTGGAAAAGCGTGT...TGTCGGAAATAAAGCATCACACGTTTGAAAGACCAAAATAGAACTCAGAGAAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
||
| CDS-3UTR GCA 90 bp | ATTTCTCTGAGTTCTATTTTGGTCTTTCAAACGTGTGATGCTTTATTTCCGACAGGTTTAGTAGCCTCTTaGATCAGCTCTTGCAACTGT | + |
|
Preference number: 4 (lower is better) Translates to: ISLSSILVFQTCDALFPTGLVAS*ISSCNC Trigger: ACAGTTGCAAGAGCTGATGCAAGAGGCTACTAAACC...TGTCGGAAATAAAGCATCACACGTTTGAAAGACCAAAATAGAACTCAGAGAAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
||
| CDS-3UTR CAA 90 bp | CTCACGGGCATGGGTCCTCTGGTGGGTAGCCCATGTGGCAGCCAGGAAAGCAAGGCTGTCCTCAGCTTGTaGCCACAGCACTGCTGCGTA | + |
|
Preference number: 5 (lower is better) Translates to: LTGMGPLVGSPCGSQESKAVLSL*PQHCCV Trigger: TACGCAGCAGTGCTGTGGCAACAAGCTGAGGACAGC...CTTGCTTTCCTGGCTGCCACATGGGCTACCCACCAGAGGACCCATGCCCGTGAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
||
| CDS-3UTR CAA 90 bp | CTCACGGGCATGGGTCCTCTGGTGGGTAGCCCATGTGGCAGCCAGGAAAGCAAGTTGCAACTGTCCAATTaGCTCATCACGAAAGTCATT | + |
|
Preference number: 5 (lower is better) Translates to: LTGMGPLVGSPCGSQESKLQLSN*LITKVI Trigger: AATGACTTTCGTGATGAGCAAATTGGACAGTTGCAA...CTTGCTTTCCTGGCTGCCACATGGGCTACCCACCAGAGGACCCATGCCCGTGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
||
| CDS GCA 90 bp | AAACACGCTTTTCCAGTTGAGCTTTGTCTGCTGTCCTCAGCTTGTTaGCACAGCACTGCTGCGTACGTCTCCCATTCCTTCAAGAATCGC | + |
|
Preference number: 5 (lower is better) Translates to: KHAFPVELCLLSSAC*HSTAAYVSHSFKNR Trigger: GCGATTCTTGAAGGAATGGGAGACGTACGCAGCAGTGCTGTGGCAACAAGCTGAGGACAGCAGACAAAGCTCAACTGGAAAAGCGTGTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
||
| CDS-3UTR CAA 90 bp | AAAGCCTGCATCTCCATGTCTGCTTTTTATGTGGGTACTAGAAATCTGAACTCCTCTGCTGTCCTCAGCTaGTTGCCACAGCACTGCTGC | + |
|
Preference number: 5 (lower is better) Translates to: KACISMSAFYVGTRNLNSSAVLS*LPQHCC Trigger: GCAGCAGTGCTGTGGCAACAAGCTGAGGACAGCAGA...GGAGTTCAGATTTCTAGTACCCACATAAAAAGCAGACATGGAGATGCAGGCTTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
||
| CDS-3UTR CAA 90 bp | CTAAAAACCATGTGGAAGTCCATGATCTGTGCTCCTGTTGACTGTAAAGGGCAACTCTTGCATCAGCTCTaGCAACTGTCCAATTTGCTC | + |
|
Preference number: 5 (lower is better) Translates to: LKTMWKSMICAPVDCKGQLLHQL*QLSNLL Trigger: GAGCAAATTGGACAGTTGCAAGAGCTGATGCAAGAG...TTGCCCTTTACAGTCAACAGGAGCACAGATCATGGACTTCCACATGGTTTTTAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
||
| CDS GCA 90 bp | GTAGACTCAGTGATACTAAACTGCCTATTGGGTTTAGTAGCCTCTTaGATCAGCTCTTGCAACTGTCCAATTTGCTCATCACGAAAGTCA | + |
|
Preference number: 5 (lower is better) Translates to: VDSVILNCLLGLVAS*ISSCNCPICSSRKS Trigger: TGACTTTCGTGATGAGCAAATTGGACAGTTGCAAGAGCTGATGCAAGAGGCTACTAAACCCAATAGGCAGTTTAGTATCACTGAGTCTAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
||
| CDS GCA 90 bp | ATACTAAACTGCCTATTGGGTTTAGTAGCCTCTTGCATCAGCTCTTaGAACTGTCCAATTTGCTCATCACGAAAGTCATTGAGTTTTTCT | + |
|
Preference number: 5 (lower is better) Translates to: ILNCLLGLVASCISS*NCPICSSRKSLSFS Trigger: AGAAAAACTCAATGACTTTCGTGATGAGCAAATTGGACAGTTGCAAGAGCTGATGCAAGAGGCTACTAAACCCAATAGGCAGTTTAGTAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
||
| CDS-3UTR CAA 90 bp | ATTTCTCTGAGTTCTATTTTGGTCTTTCAAACGTGTGATGCTTTATTTCCGACAAACACGCTTTTCCAGTaGAGCTTTGTCTGCTGTCCT | + |
|
Preference number: 5 (lower is better) Translates to: ISLSSILVFQTCDALFPTNTLFQ*SFVCCP Trigger: AGGACAGCAGACAAAGCTCAACTGGAAAAGCGTGTT...TGTCGGAAATAAAGCATCACACGTTTGAAAGACCAAAATAGAACTCAGAGAAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
||
| CDS CAA 72 bp | CTAAATTCGTCCTTCACGTACTGGTCACCCAGGGCTTaGAGGTCCGGGGGCAGAGCCCGATGTAGCAGCAAG | + |
|
Preference number: 6 (lower is better) Translates to: LNSSFTYWSPRA*RSGGRARCSSK Trigger: CTTGCTGCTACATCGGGCTCTGCCCCCGGACCTCAAAGCCCTGGGTGACCAGTACGTGAAGGACGAATTTAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
||
| CDS GCA 72 bp | TTGTCTGCTGTCCTCAGCTTGTTGCCACAGCACTGCTaGGTACGTCTCCCATTCCTTCAAGAATCGCTGGGC | + |
|
Preference number: 6 (lower is better) Translates to: LSAVLSLLPQHC*VRLPFLQESLG Trigger: GCCCAGCGATTCTTGAAGGAATGGGAGACGTACGCAGCAGTGCTGTGGCAACAAGCTGAGGACAGCAGACAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
||
| CDS GCA 72 bp | GCTTTGTCTGCTGTCCTCAGCTTGTTGCCACAGCACTaGTGCGTACGTCTCCCATTCCTTCAAGAATCGCTG | + |
|
Preference number: 6 (lower is better) Translates to: ALSAVLSLLPQH*CVRLPFLQESL Trigger: CAGCGATTCTTGAAGGAATGGGAGACGTACGCAGCAGTGCTGTGGCAACAAGCTGAGGACAGCAGACAAAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
||
| CDS GCA 72 bp | TGCCTATTGGGTTTAGTAGCCTCTTGCATCAGCTCTTaGAACTGTCCAATTTGCTCATCACGAAAGTCATTG | + |
|
Preference number: 6 (lower is better) Translates to: CLLGLVASCISS*NCPICSSRKSL Trigger: CAATGACTTTCGTGATGAGCAAATTGGACAGTTGCAAGAGCTGATGCAAGAGGCTACTAAACCCAATAGGCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
||
| CDS CAA 72 bp | CTGCCTATTGGGTTTAGTAGCCTCTTGCATCAGCTCTaGCAACTGTCCAATTTGCTCATCACGAAAGTCATT | + |
|
Preference number: 6 (lower is better) Translates to: LPIGFSSLLHQL*QLSNLLITKVI Trigger: AATGACTTTCGTGATGAGCAAATTGGACAGTTGCAAGAGCTGATGCAAGAGGCTACTAAACCCAATAGGCAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
||
| CDS GCA 72 bp | GTGATACTAAACTGCCTATTGGGTTTAGTAGCCTCTTaGATCAGCTCTTGCAACTGTCCAATTTGCTCATCA | + |
|
Preference number: 6 (lower is better) Translates to: VILNCLLGLVAS*ISSCNCPICSS Trigger: TGATGAGCAAATTGGACAGTTGCAAGAGCTGATGCAAGAGGCTACTAAACCCAATAGGCAGTTTAGTATCAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
||
| CDS CAA 90 bp | GATACTAAACTGCCTATTGGGTTTAGTAGCCTCTTGCATCAGCTCTaGCAACTGTCCAATTTGCTCATCACGAAAGTCATTGAGTTTTTC | + |
|
Preference number: 6 (lower is better) Translates to: DTKLPIGFSSLLHQL*QLSNLLITKVIEFF Trigger: GAAAAACTCAATGACTTTCGTGATGAGCAAATTGGACAGTTGCAAGAGCTGATGCAAGAGGCTACTAAACCCAATAGGCAGTTTAGTATC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040826.6 |
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