RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SDHAF1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000074211

Ensembl transcript IDs: ENSMUST00000098586.5

Found 36 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GAGCTGTCTGTCAAGAGGTGCCACGGCCCCGATGGGAGGAGAAAGTaGGCCTGTGCTCTCTCTTTGACTTTGGGTTGGTGTATCACAGCA +
Preference number: 1 (lower is better)
Translates to: ELSVKRCHGPDGRRK*ACALSLTLGWCITA
Trigger: TGCTGTGATACACCAACCCAAAGTCAAAGAGAGAGCACAGGCGCACTTTCTCCTCCCATCGGGGCCGTGGCACCTCTTGACAGACAGCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098586.5
3UTR GCA 90 bp TGTCAAGAGGTGCCACGGCCCCGATGGGAGGAGAAAGTGCGCCTGTaGTCTCTCTTTGACTTTGGGTTGGTGTATCACAGCATGTCTTAT +
Preference number: 1 (lower is better)
Translates to: CQEVPRPRWEEKVRL*SLFDFGLVYHSMSY
Trigger: ATAAGACATGCTGTGATACACCAACCCAAAGTCAAAGAGAGAGCACAGGCGCACTTTCTCCTCCCATCGGGGCCGTGGCACCTCTTGACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098586.5
3UTR CAA 90 bp CGATGGGAGGAGAAAGTGCGCCTGTGCTCTCTCTTTGACTTTGGGTaGGTGTATCACAGCATGTCTTATGCAGTCCGCCAGTGCCACAGA +
Preference number: 2 (lower is better)
Translates to: RWEEKVRLCSLFDFG*VYHSMSYAVRQCHR
Trigger: TCTGTGGCACTGGCGGACTGCATAAGACATGCTGTGATACACCAACCCAAAGTCAAAGAGAGAGCACAGGCGCACTTTCTCCTCCCATCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098586.5
3UTR-3UTR GCA 90 bp CAACAAGGAAGTGAGCACACCTCACTTTTATTTCCTTTATGCAAGAATCCTGAGCACAACGAGTCAGACTaGCAAGTTTCTCACGGTTCA +
Preference number: 2 (lower is better)
Translates to: QQGSEHTSLLFPLCKNPEHNESD*QVSHGS
Trigger: TGAACCGTGAGAAACTTGGCAGTCTGACTCGTTGTG...CTCAGGATTCTTGCATAAAGGAAATAAAAGTGAGGTGTGCTCACTTCCTTGTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098586.5
3UTR-3UTR TCA 90 bp TTAAGACAACAAGGAAGTGAGCACACCTCACTTTTATTTCCTTTATGCAAGAATGCTCATCAGCTGAGATaGGCTAGTGTAATCTCCCTC +
Preference number: 2 (lower is better)
Translates to: LRQQGSEHTSLLFPLCKNAHQLR*ASVISL
Trigger: GAGGGAGATTACACTAGCTCATCTCAGCTGATGAGC...ATTCTTGCATAAAGGAAATAAAAGTGAGGTGTGCTCACTTCCTTGTTGTCTTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098586.5
3UTR-3UTR TCA 90 bp TTAAGACAACAAGGAAGTGAGCACACCTCACTTTTATTTCCTTTATGCAAGAATCCTGTGCTCTCTCTTTaGCTTTGGGTTGGTGTATCA +
Preference number: 2 (lower is better)
Translates to: LRQQGSEHTSLLFPLCKNPVLSL*LWVGVS
Trigger: TGATACACCAACCCAAAGTCAAAGAGAGAGCACAGG...ATTCTTGCATAAAGGAAATAAAAGTGAGGTGTGCTCACTTCCTTGTTGTCTTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098586.5
3UTR GCA 72 bp GTGCCACGGCCCCGATGGGAGGAGAAAGTGCGCCTGTaGTCTCTCTTTGACTTTGGGTTGGTGTATCACAGC +
Preference number: 3 (lower is better)
Translates to: VPRPRWEEKVRL*SLFDFGLVYHS
Trigger: GCTGTGATACACCAACCCAAAGTCAAAGAGAGAGCACAGGCGCACTTTCTCCTCCCATCGGGGCCGTGGCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098586.5
3UTR GCA 72 bp GTCAAGAGGTGCCACGGCCCCGATGGGAGGAGAAAGTaGGCCTGTGCTCTCTCTTTGACTTTGGGTTGGTGT +
Preference number: 3 (lower is better)
Translates to: VKRCHGPDGRRK*ACALSLTLGWC
Trigger: ACACCAACCCAAAGTCAAAGAGAGAGCACAGGCGCACTTTCTCCTCCCATCGGGGCCGTGGCACCTCTTGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098586.5
3UTR CCA 72 bp AAGAGAGCTGTCTGTCAAGAGGTGCCACGGCCCCGATaGGAGGAGAAAGTGCGCCTGTGCTCTCTCTTTGAC +
Preference number: 3 (lower is better)
Translates to: KRAVCQEVPRPR*EEKVRLCSLFD
Trigger: GTCAAAGAGAGAGCACAGGCGCACTTTCTCCTCCCATCGGGGCCGTGGCACCTCTTGACAGACAGCTCTCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098586.5
3UTR TCA 72 bp GGGATTCTCCAAGAGTCTCAGGCTCATCAGCTGAGATaGGCTAGTGTAATCTCCCTCATGAACCCGGTTCTT +
Preference number: 3 (lower is better)
Translates to: GILQESQAHQLR*ASVISLMNPVL
Trigger: AAGAACCGGGTTCATGAGGGAGATTACACTAGCTCATCTCAGCTGATGAGCCTGAGACTCTTGGAGAATCCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098586.5
3UTR CCA 72 bp AGAAAGTGCGCCTGTGCTCTCTCTTTGACTTTGGGTTaGTGTATCACAGCATGTCTTATGCAGTCCGCCAGT +
Preference number: 3 (lower is better)
Translates to: RKCACALSLTLG*CITACLMQSAS
Trigger: ACTGGCGGACTGCATAAGACATGCTGTGATACACCAACCCAAAGTCAAAGAGAGAGCACAGGCGCACTTTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098586.5
3UTR TCA 72 bp CGGTTATCTCTCAAGACATCTCAGCTTCCATTTAGATaGGTTCACGATCCTCCCCAAACTGTCAGAAGGAAC +
Preference number: 3 (lower is better)
Translates to: RLSLKTSQLPFR*VHDPPQTVRRN
Trigger: GTTCCTTCTGACAGTTTGGGGAGGATCGTGAACTCATCTAAATGGAAGCTGAGATGTCTTGAGAGATAACCG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098586.5
3UTR TCA 72 bp GCACACCTCACTTTTATTTCCTTTATGCAAGAATCCTaGGGACTAACAGGAGTAGGGACTAGGGATTCTCCA +
Preference number: 3 (lower is better)
Translates to: AHLTFISFMQES*GLTGVGTRDSP
Trigger: TGGAGAATCCCTAGTCCCTACTCCTGTTAGTCCTCAGGATTCTTGCATAAAGGAAATAAAAGTGAGGTGTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098586.5
3UTR-3UTR CAA 90 bp TTAAGACAACAAGGAAGTGAGCACACCTCACTTTTATTTCCTTTATGCAAGAATGCCTGTGCTCTCTCTTaGACTTTGGGTTGGTGTATC +
Preference number: 3 (lower is better)
Translates to: LRQQGSEHTSLLFPLCKNACALS*TLGWCI
Trigger: GATACACCAACCCAAAGTCAAAGAGAGAGCACAGGC...ATTCTTGCATAAAGGAAATAAAAGTGAGGTGTGCTCACTTCCTTGTTGTCTTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098586.5
CDS-3UTR GCA 90 bp TCAAGAGGTGCCACGGCCCCGATGGGAGGAGAAAGTGCGCCTGTGCTCTCTCTTCTCAGAACTTGCCTCTaGAACCGGCTGGGCCGGCTC +
Preference number: 4 (lower is better)
Translates to: SRGATAPMGGESAPVLSLLRTCL*NRLGRL
Trigger: GAGCCGGCCCAGCCGGTTGCAGAGGCAAGTTCTGAG...AAGAGAGAGCACAGGCGCACTTTCTCCTCCCATCGGGGCCGTGGCACCTCTTGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098586.5
3UTR CAA 72 bp GCAGTCCGCCAGTGCCACAGAATGCCCGGAACCTCCTaGGTGAGGGAGTGTCTGATCTCTCACTATGCATCG +
Preference number: 4 (lower is better)
Translates to: AVRQCHRMPGTS*VRECLISHYAS
Trigger: CGATGCATAGTGAGAGATCAGACACTCCCTCACCAAGGAGGTTCCGGGCATTCTGTGGCACTGGCGGACTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098586.5
CDS-3UTR GCA 90 bp TCACTATGCATCGGGAAAATTCGGTTATCTCTCAAGACATCTCAGCTTCCATTTGGAAGGCTGGCGTGCTaGCGGAACTCGGCCCGCACC +
Preference number: 4 (lower is better)
Translates to: SLCIGKIRLSLKTSQLPFGRLAC*RNSART
Trigger: GGTGCGGGCCGAGTTCCGGCAGCACGCCAGCCTTCC...AAATGGAAGCTGAGATGTCTTGAGAGATAACCGAATTTTCCCGATGCATAGTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098586.5
CDS-3UTR CCA 90 bp TCACTATGCATCGGGAAAATTCGGTTATCTCTCAAGACATCTCAGCTTCCATTTAGGTACCCATGGCCGTaGCGTGGCCCGAACGCAGCA +
Preference number: 4 (lower is better)
Translates to: SLCIGKIRLSLKTSQLPFRYPWP*RGPNAA
Trigger: TGCTGCGTTCGGGCCACGCCACGGCCATGGGTACCT...AAATGGAAGCTGAGATGTCTTGAGAGATAACCGAATTTTCCCGATGCATAGTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098586.5
CDS-3UTR CCA 90 bp CAACAAGGAAGTGAGCACACCTCACTTTTATTTCCTTTATGCAAGAATCCTGAGGCACGAAGGTACCCATaGCCGTGGCGTGGCCCGAAC +
Preference number: 4 (lower is better)
Translates to: QQGSEHTSLLFPLCKNPEARRYP*PWRGPN
Trigger: GTTCGGGCCACGCCACGGCCATGGGTACCTTCGTGC...CTCAGGATTCTTGCATAAAGGAAATAAAAGTGAGGTGTGCTCACTTCCTTGTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098586.5
3UTR CAA 72 bp GAGAAAGTGCGCCTGTGCTCTCTCTTTGACTTTGGGTaGGTGTATCACAGCATGTCTTATGCAGTCCGCCAG +
Preference number: 4 (lower is better)
Translates to: EKVRLCSLFDFG*VYHSMSYAVRQ
Trigger: CTGGCGGACTGCATAAGACATGCTGTGATACACCAACCCAAAGTCAAAGAGAGAGCACAGGCGCACTTTCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098586.5
CDS-3UTR CCA 90 bp TTAAGACAACAAGGAAGTGAGCACACCTCACTTTTATTTCCTTTATGCAAGAATCGGTTCGCGGAAGGCTaGCGTGCTGCCGGAACTCGG +
Preference number: 4 (lower is better)
Translates to: LRQQGSEHTSLLFPLCKNRFAEG*RAAGTR
Trigger: CCGAGTTCCGGCAGCACGCCAGCCTTCCGCGAACCG...ATTCTTGCATAAAGGAAATAAAAGTGAGGTGTGCTCACTTCCTTGTTGTCTTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098586.5
CDS-3UTR GCA 90 bp TCACTATGCATCGGGAAAATTCGGTTATCTCTCAAGACATCTCAGCTTCCATTTTACAGGCTCAGAACTTaGCTCTGCAACCGGCTGGGC +
Preference number: 4 (lower is better)
Translates to: SLCIGKIRLSLKTSQLPFYRLRT*LCNRLG
Trigger: GCCCAGCCGGTTGCAGAGGCAAGTTCTGAGCCTGTA...AAATGGAAGCTGAGATGTCTTGAGAGATAACCGAATTTTCCCGATGCATAGTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098586.5
CDS CCA 90 bp GCTCTTCAGCCGGACCCCGCGGGCGCACGAAGGTACCCATGGCCGTaGCGTGGCCCGAACGCAGCAGCTGTAGCTGGCGCCGACCCCGGC +
Preference number: 5 (lower is better)
Translates to: ALQPDPAGARRYPWP*RGPNAAAVAGADPG
Trigger: GCCGGGGTCGGCGCCAGCTACAGCTGCTGCGTTCGGGCCACGCCACGGCCATGGGTACCTTCGTGCGCCCGCGGGGTCCGGCTGAAGAGC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098586.5
CDS CCA 90 bp CGCCGGGCTCTTCAGCCGGACCCCGCGGGCGCACGAAGGTACCCATaGCCGTGGCGTGGCCCGAACGCAGCAGCTGTAGCTGGCGCCGAC +
Preference number: 5 (lower is better)
Translates to: RRALQPDPAGARRYP*PWRGPNAAAVAGAD
Trigger: GTCGGCGCCAGCTACAGCTGCTGCGTTCGGGCCACGCCACGGCCATGGGTACCTTCGTGCGCCCGCGGGGTCCGGCTGAAGAGCCCGGCG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098586.5
CDS CCA 90 bp TCAGCCGGACCCCGCGGGCGCACGAAGGTACCCATGGCCGTGGCGTaGCCCGAACGCAGCAGCTGTAGCTGGCGCCGACCCCGGCGATAC +
Preference number: 5 (lower is better)
Translates to: SAGPRGRTKVPMAVA*PERSSCSWRRPRRY
Trigger: GTATCGCCGGGGTCGGCGCCAGCTACAGCTGCTGCGTTCGGGCCACGCCACGGCCATGGGTACCTTCGTGCGCCCGCGGGGTCCGGCTGA
73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098586.5
CDS CCA 90 bp GGCGATACAGATACTCGATACGCAGCACGTCGGTTCGCGGAAGGCTaGCGTGCTGCCGGAACTCGGCCCGCACCCGCGCCTCGGCGCCCG +
Preference number: 5 (lower is better)
Translates to: GDTDTRYAARRFAEG*RAAGTRPAPAPRRP
Trigger: CGGGCGCCGAGGCGCGGGTGCGGGCCGAGTTCCGGCAGCACGCCAGCCTTCCGCGAACCGACGTGCTGCGTATCGAGTATCTGTATCGCC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098586.5
CDS CCA 90 bp AAGGTACCCATGGCCGTGGCGTGGCCCGAACGCAGCAGCTGTAGCTaGCGCCGACCCCGGCGATACAGATACTCGATACGCAGCACGTCG +
Preference number: 5 (lower is better)
Translates to: KVPMAVAWPERSSCS*RRPRRYRYSIRSTS
Trigger: CGACGTGCTGCGTATCGAGTATCTGTATCGCCGGGGTCGGCGCCAGCTACAGCTGCTGCGTTCGGGCCACGCCACGGCCATGGGTACCTT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098586.5
CDS-3UTR CAA 90 bp GAGGTGCCACGGCCCCGATGGGAGGAGAAAGTGCGCCTGTGCTCTCTCTTTGACCTTCACAAGAATTCTTaGGGGCACCACCATCATCCA +
Preference number: 5 (lower is better)
Translates to: EVPRPRWEEKVRLCSLFDLHKNS*GHHHHP
Trigger: TGGATGATGGTGGTGCCCCAAAGAATTCTTGTGAAG...GTCAAAGAGAGAGCACAGGCGCACTTTCTCCTCCCATCGGGGCCGTGGCACCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098586.5
CDS-3UTR CAA 90 bp CAACAAGGAAGTGAGCACACCTCACTTTTATTTCCTTTATGCAAGAATCCTGAGGTACAGGCTCAGAACTaGCCTCTGCAACCGGCTGGG +
Preference number: 5 (lower is better)
Translates to: QQGSEHTSLLFPLCKNPEVQAQN*PLQPAG
Trigger: CCCAGCCGGTTGCAGAGGCAAGTTCTGAGCCTGTAC...CTCAGGATTCTTGCATAAAGGAAATAAAAGTGAGGTGTGCTCACTTCCTTGTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098586.5
CDS GCA 72 bp ATACGCAGCACGTCGGTTCGCGGAAGGCTGGCGTGCTaGCGGAACTCGGCCCGCACCCGCGCCTCGGCGCCC +
Preference number: 6 (lower is better)
Translates to: IRSTSVRGRLAC*RNSARTRASAP
Trigger: GGGCGCCGAGGCGCGGGTGCGGGCCGAGTTCCGGCAGCACGCCAGCCTTCCGCGAACCGACGTGCTGCGTAT
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098586.5
CDS CCA 72 bp CCCCGCGGGCGCACGAAGGTACCCATGGCCGTGGCGTaGCCCGAACGCAGCAGCTGTAGCTGGCGCCGACCC +
Preference number: 6 (lower is better)
Translates to: PRGRTKVPMAVA*PERSSCSWRRP
Trigger: GGGTCGGCGCCAGCTACAGCTGCTGCGTTCGGGCCACGCCACGGCCATGGGTACCTTCGTGCGCCCGCGGGG
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098586.5
CDS CCA 72 bp CCGGACCCCGCGGGCGCACGAAGGTACCCATGGCCGTaGCGTGGCCCGAACGCAGCAGCTGTAGCTGGCGCC +
Preference number: 6 (lower is better)
Translates to: PDPAGARRYPWP*RGPNAAAVAGA
Trigger: GGCGCCAGCTACAGCTGCTGCGTTCGGGCCACGCCACGGCCATGGGTACCTTCGTGCGCCCGCGGGGTCCGG
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098586.5
CDS GCA 72 bp TCGATACGCAGCACGTCGGTTCGCGGAAGGCTGGCGTaGTGCCGGAACTCGGCCCGCACCCGCGCCTCGGCG +
Preference number: 6 (lower is better)
Translates to: SIRSTSVRGRLA*CRNSARTRASA
Trigger: CGCCGAGGCGCGGGTGCGGGCCGAGTTCCGGCAGCACGCCAGCCTTCCGCGAACCGACGTGCTGCGTATCGA
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098586.5
CDS CCA 72 bp CTTCAGCCGGACCCCGCGGGCGCACGAAGGTACCCATaGCCGTGGCGTGGCCCGAACGCAGCAGCTGTAGCT +
Preference number: 6 (lower is better)
Translates to: LQPDPAGARRYP*PWRGPNAAAVA
Trigger: AGCTACAGCTGCTGCGTTCGGGCCACGCCACGGCCATGGGTACCTTCGTGCGCCCGCGGGGTCCGGCTGAAG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098586.5
CDS CCA 72 bp GATACTCGATACGCAGCACGTCGGTTCGCGGAAGGCTaGCGTGCTGCCGGAACTCGGCCCGCACCCGCGCCT +
Preference number: 6 (lower is better)
Translates to: DTRYAARRFAEG*RAAGTRPAPAP
Trigger: AGGCGCGGGTGCGGGCCGAGTTCCGGCAGCACGCCAGCCTTCCGCGAACCGACGTGCTGCGTATCGAGTATC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098586.5
CDS CCA 72 bp ATGGCCGTGGCGTGGCCCGAACGCAGCAGCTGTAGCTaGCGCCGACCCCGGCGATACAGATACTCGATACGC +
Preference number: 6 (lower is better)
Translates to: MAVAWPERSSCS*RRPRRYRYSIR
Trigger: GCGTATCGAGTATCTGTATCGCCGGGGTCGGCGCCAGCTACAGCTGCTGCGTTCGGGCCACGCCACGGCCAT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098586.5