Pregenerated sensors for SDHA (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021577Ensembl transcript IDs: ENSMUST00000022062.8, ENSMUST00000221594.2
Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TCAATCCCTTACAGCAAGTACTACCAAGCTGTTGATCACAATCTATaGAGTGACTCCTTGTTCATGAGAGCAGAATTTTACCAAGACAAG | + |
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Preference number: 1 (lower is better) Translates to: SIPYSKYYQAVDHNL*SDSLFMRAEFYQDK Trigger: CTTGTCTTGGTAAAATTCTGCTCTCATGAACAAGGAGTCACTTCATAGATTGTGATCAACAGCTTGGTAGTACTTGCTGTAAGGGATTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022062.8 |
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| 3UTR TCA 90 bp | ATGAACTTGAAGAAACTAGTTACATTCACAGTGAGAAGTAGACAATaGATAACTGCATGCATGGGGAAGGCTCAGCTTGCTCTTATACAG | + |
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Preference number: 1 (lower is better) Translates to: MNLKKLVTFTVRSRQ*ITACMGKAQLALIQ Trigger: CTGTATAAGAGCAAGCTGAGCCTTCCCCATGCATGCAGTTATTCATTGTCTACTTCTCACTGTGAATGTAACTAGTTTCTTCAAGTTCAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022062.8 |
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| 3UTR-3UTR CCA 90 bp | TGCTGGTTAAAGTCCTTCATTTCAAGGAAGTCAGGGCATGAACTTGAAGAAACTTCAGAGACATGCCCATaGACCAAGCAAACAGAAGCA | + |
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Preference number: 2 (lower is better) Translates to: CWLKSFISRKSGHELEETSETCP*TKQTEA Trigger: TGCTTCTGTTTGCTTGGTCCATGGGCATGTCTCTGA...AGTTTCTTCAAGTTCATGCCCTGACTTCCTTGAAATGAAGGACTTTAACCAGCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022062.8 |
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| 3UTR-3UTR TCA 90 bp | AAGGGTTTATTTGGCTTACAATTGCTGGTTAAAGTCCTTCATTTCAAGGAAGTCTTACCAAGACAAGTATaGGGGGAAACGCAGGTAAGC | + |
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Preference number: 2 (lower is better) Translates to: KGLFGLQLLVKVLHFKEVLPRQV*GETQVS Trigger: GCTTACCTGCGTTTCCCCTCATACTTGTCTTGGTAA...GACTTCCTTGAAATGAAGGACTTTAACCAGCAATTGTAAGCCAAATAAACCCTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022062.8 |
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| 3UTR-3UTR TCA 90 bp | ATTTCAAGGAAGTCAGGGCATGAACTTGAAGAAACTAGTTACATTCACAGTGAGCTTTCCTTCAAATTATaGAGGACCTGCCCTACTTCA | + |
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Preference number: 2 (lower is better) Translates to: ISRKSGHELEETSYIHSELSFKL*RTCPTS Trigger: TGAAGTAGGGCAGGTCCTTCATAATTTGAAGGAAAG...CTCACTGTGAATGTAACTAGTTTCTTCAAGTTCATGCCCTGACTTCCTTGAAAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022062.8 |
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| 3UTR-3UTR GCA 90 bp | TGCTGGTTAAAGTCCTTCATTTCAAGGAAGTCAGGGCATGAACTTGAAGAAACTATAAACATGGACATATaGATATACCTCTACCCACCA | + |
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Preference number: 2 (lower is better) Translates to: CWLKSFISRKSGHELEETINMDI*IYLYPP Trigger: TGGTGGGTAGAGGTATATGCATATGTCCATGTTTAT...AGTTTCTTCAAGTTCATGCCCTGACTTCCTTGAAATGAAGGACTTTAACCAGCA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022062.8 |
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| 3UTR-3UTR TCA 90 bp | TTGAGAAAGGGTTTATTTGGCTTACAATTGCTGGTTAAAGTCCTTCATTTCAAGTCACAATCTATGAAGTaGCTCCTTGTTCATGAGAGC | + |
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Preference number: 2 (lower is better) Translates to: LRKGLFGLQLLVKVLHFKSQSMK*LLVHES Trigger: GCTCTCATGAACAAGGAGTCACTTCATAGATTGTGA...CTTGAAATGAAGGACTTTAACCAGCAATTGTAAGCCAAATAAACCCTTTCTCAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022062.8 |
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| 3UTR-3UTR GCA 90 bp | TCAAGGAAGTCAGGGCATGAACTTGAAGAAACTAGTTACATTCACAGTGAGAAGTGCCAGTTTTATCACTaGACAAGAATAAAGAGACAA | + |
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Preference number: 2 (lower is better) Translates to: SRKSGHELEETSYIHSEKCQFYH*TRIKRQ Trigger: TTGTCTCTTTATTCTTGTGCAGTGATAAAACTGGCA...CTTCTCACTGTGAATGTAACTAGTTTCTTCAAGTTCATGCCCTGACTTCCTTGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022062.8 |
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| 3UTR-3UTR TCA 90 bp | AAGGGTTTATTTGGCTTACAATTGCTGGTTAAAGTCCTTCATTTCAAGGAAGTCACTTCACACAGAGAATaGACAAAACAATACTTGTGC | + |
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Preference number: 2 (lower is better) Translates to: KGLFGLQLLVKVLHFKEVTSHRE*TKQYLC Trigger: GCACAAGTATTGTTTTGTTCATTCTCTGTGTGAAGT...GACTTCCTTGAAATGAAGGACTTTAACCAGCAATTGTAAGCCAAATAAACCCTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022062.8 |
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| 3UTR TCA 72 bp | TGGGGAAGGCTCAGCTTGCTCTTATACAGTCCAGACTaGTTTGACCAGAGAATGATGGTGCCCACAGTGGGC | + |
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Preference number: 3 (lower is better) Translates to: WGRLSLLLYSPD*FDQRMMVPTVG Trigger: GCCCACTGTGGGCACCATCATTCTCTGGTCAAATCAGTCTGGACTGTATAAGAGCAAGCTGAGCCTTCCCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022062.8 |
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| 3UTR TCA 72 bp | AAGGCTCAGCTTGCTCTTATACAGTCCAGACTGATTTaGCCAGAGAATGATGGTGCCCACAGTGGGCTGTCT | + |
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Preference number: 3 (lower is better) Translates to: KAQLALIQSRLI*PENDGAHSGLS Trigger: AGACAGCCCACTGTGGGCACCATCATTCTCTGGTCAAATCAGTCTGGACTGTATAAGAGCAAGCTGAGCCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022062.8 |
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| 3UTR TCA 72 bp | AAGAAACTAGTTACATTCACAGTGAGAAGTAGACAATaGATAACTGCATGCATGGGGAAGGCTCAGCTTGCT | + |
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Preference number: 3 (lower is better) Translates to: KKLVTFTVRSRQ*ITACMGKAQLA Trigger: AGCAAGCTGAGCCTTCCCCATGCATGCAGTTATTCATTGTCTACTTCTCACTGTGAATGTAACTAGTTTCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022062.8 |
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| 3UTR TCA 72 bp | CTGTTGATCACAATCTATGAAGTGACTCCTTGTTCATaGGAGCAGAATTTTACCAAGACAAGTATGAGGGGA | + |
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Preference number: 3 (lower is better) Translates to: LLITIYEVTPCS*EQNFTKTSMRG Trigger: TCCCCTCATACTTGTCTTGGTAAAATTCTGCTCTCATGAACAAGGAGTCACTTCATAGATTGTGATCAACAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022062.8 |
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| 3UTR TCA 72 bp | TACAGCAAGTACTACCAAGCTGTTGATCACAATCTATaGAGTGACTCCTTGTTCATGAGAGCAGAATTTTAC | + |
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Preference number: 3 (lower is better) Translates to: YSKYYQAVDHNL*SDSLFMRAEFY Trigger: GTAAAATTCTGCTCTCATGAACAAGGAGTCACTTCATAGATTGTGATCAACAGCTTGGTAGTACTTGCTGTA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022062.8 |
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| 3UTR-3UTR CAA 90 bp | TTGAGAAAGGGTTTATTTGGCTTACAATTGCTGGTTAAAGTCCTTCATTTCAAGAGTCAGGGCATGAACTaGAAGAAACTAGTTACATTC | + |
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Preference number: 3 (lower is better) Translates to: LRKGLFGLQLLVKVLHFKSQGMN*KKLVTF Trigger: GAATGTAACTAGTTTCTTCAAGTTCATGCCCTGACT...CTTGAAATGAAGGACTTTAACCAGCAATTGTAAGCCAAATAAACCCTTTCTCAA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022062.8 |
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| CDS-3UTR GCA 90 bp | AATAACTGCATGCATGGGGAAGGCTCAGCTTGCTCTTATACAGTCCAGACTGATAGCCGGTTGGCACCATaGACTGAGGCGCAGGCAGCC | + |
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Preference number: 4 (lower is better) Translates to: NNCMHGEGSACSYTVQTDSRLAP*TEAQAA Trigger: GGCTGCCTGCGCCTCAGTGCATGGTGCCAACCGGCT...ATCAGTCTGGACTGTATAAGAGCAAGCTGAGCCTTCCCCATGCATGCAGTTATT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022062.8 |
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| CDS-3UTR CCA 90 bp | TTCACACAGAGAATGAACAAAACAATACTTGTGCTGCAGCTAGACAGCGGAAGATGCCGTCCCCTGTGCTaGTATGGGCAGATGTACAGC | + |
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Preference number: 4 (lower is better) Translates to: FTQRMNKTILVLQLDSGRCRPLC*YGQMYS Trigger: GCTGTACATCTGCCCATACCAGCACAGGGGACGGCA...TCTTCCGCTGTCTAGCTGCAGCACAAGTATTGTTTTGTTCATTCTCTGTGTGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022062.8 |
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| CDS-3UTR TCA 90 bp | AGGAACCTAAACAAGGCACTGGCTCGATACTTACCATATCCAAACTTTCCTTCATCCCCAGAGCAGCATTaGTACCTCCCTGTGCTGCAA | + |
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Preference number: 4 (lower is better) Translates to: RNLNKALARYLPYPNFPSSPEQH*YLPVLQ Trigger: TTGCAGCACAGGGAGGTATCAATGCTGCTCTGGGGA...TGAAGGAAAGTTTGGATATGGTAAGTATCGAGCCAGTGCCTTGTTTAGGTTCCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022062.8 |
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| CDS-3UTR CCA 90 bp | GACAAAGCTAGCCAGCACATACGCCCTCAAATAAACATGGACATATGCATATACCTTTGTAATCTTCCCTaGCATGGGCTCCCCGGGACT | + |
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Preference number: 4 (lower is better) Translates to: DKASQHIRPQINMDICIYLCNLP*HGLPGT Trigger: AGTCCCGGGGAGCCCATGCCAGGGAAGATTACAAAG...GTATATGCATATGTCCATGTTTATTTGAGGGCGTATGTGCTGGCTAGCTTTGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022062.8 |
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| CDS-3UTR CCA 90 bp | TTCACACAGAGAATGAACAAAACAATACTTGTGCTGCAGCTAGACAGCGGAAGATCCCCTGTGCTGGTATaGGCAGATGTACAGCTGAAG | + |
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Preference number: 4 (lower is better) Translates to: FTQRMNKTILVLQLDSGRSPVLV*ADVQLK Trigger: CTTCAGCTGTACATCTGCCCATACCAGCACAGGGGA...TCTTCCGCTGTCTAGCTGCAGCACAAGTATTGTTTTGTTCATTCTCTGTGTGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022062.8 |
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| CDS-3UTR GCA 90 bp | GAACCTAAACAAGGCACTGGCTCGATACTTACCATATCCAAACTTTCCTTCAAATCCTGGCCATTCACATaGTTCAGCACCTGTCCCTTG | + |
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Preference number: 4 (lower is better) Translates to: EPKQGTGSILTISKLSFKSWPFT*FSTCPL Trigger: CAAGGGACAGGTGCTGAAGCATGTGAATGGCCAGGA...TTTGAAGGAAAGTTTGGATATGGTAAGTATCGAGCCAGTGCCTTGTTTAGGTTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022062.8 |
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| CDS-3UTR TCA 90 bp | GACAAAGCTAGCCAGCACATACGCCCTCAAATAAACATGGACATATGCATATACTCACCAACAGAGAAGTaGAAGCCGCAGGTCTGTTTT | + |
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Preference number: 4 (lower is better) Translates to: DKASQHIRPQINMDICIYSPTEK*KPQVCF Trigger: AAAACAGACCTGCGGCTTTCACTTCTCTGTTGGTGA...GTATATGCATATGTCCATGTTTATTTGAGGGCGTATGTGCTGGCTAGCTTTGTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022062.8 |
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| CDS-3UTR GCA 90 bp | GAATTATGCCAGTTTTATCACTGCACAAGAATAAAGAGACAAAGTCTGGCGCAATCAGGGCACAGGCTCTaGCAAAGACTACAAGGTCCA | + |
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Preference number: 4 (lower is better) Translates to: ELCQFYHCTRIKRQSLAQSGHRL*QRLQGP Trigger: TGGACCTTGTAGTCTTTGGCAGAGCCTGTGCCCTGA...TTGCGCCAGACTTTGTCTCTTTATTCTTGTGCAGTGATAAAACTGGCATAATTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022062.8 |
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| CDS-3UTR CCA 90 bp | ACAGAGAATGAACAAAACAATACTTGTGCTGCAGCTAGACAGCGGAAGAAAATTCTGTCATGTAATGGATaGCATCCTGATCCCCCAGCC | + |
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Preference number: 4 (lower is better) Translates to: TENEQNNTCAAARQRKKILSCNG*HPDPPA Trigger: GGCTGGGGGATCAGGATGCCATCCATTACATGACAG...AATTTTCTTCCGCTGTCTAGCTGCAGCACAAGTATTGTTTTGTTCATTCTCTGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000022062.8 |
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| CDS-3UTR CCA 90 bp | ACAGAGAATGAACAAAACAATACTTGTGCTGCAGCTAGACAGCGGAAGAAAATTTGTTGTAATGCACAGTaGGGAGGACTGGGATGGGCT | + |
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Preference number: 4 (lower is better) Translates to: TENEQNNTCAAARQRKKICCNAQ*GGLGWA Trigger: AGCCCATCCCAGTCCTCCCCACTGTGCATTACAACA...AATTTTCTTCCGCTGTCTAGCTGCAGCACAAGTATTGTTTTGTTCATTCTCTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022062.8 |
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| CDS-3UTR TCA 90 bp | AGGAACCTAAACAAGGCACTGGCTCGATACTTACCATATCCAAACTTTCCTTCAATGAACCTTTCACCTTaGCTGTTGATGAGAATCCCC | + |
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Preference number: 4 (lower is better) Translates to: RNLNKALARYLPYPNFPSMNLSP*LLMRIP Trigger: GGGGATTCTCATCAACAGTCAAGGTGAAAGGTTCAT...TGAAGGAAAGTTTGGATATGGTAAGTATCGAGCCAGTGCCTTGTTTAGGTTCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022062.8 |
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| CDS-3UTR CCA 90 bp | GAACCTAAACAAGGCACTGGCTCGATACTTACCATATCCAAACTTTCCTTCAAAGGATCTCAAGAGTCATaGATCGAGACACAACATCTC | + |
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Preference number: 4 (lower is better) Translates to: EPKQGTGSILTISKLSFKGSQES*IETQHL Trigger: GAGATGTTGTGTCTCGATCCATGACTCTTGAGATCC...TTTGAAGGAAAGTTTGGATATGGTAAGTATCGAGCCAGTGCCTTGTTTAGGTTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022062.8 |
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| CDS-3UTR GCA 90 bp | TTCCTTCAAATTATGAAGGACCTGCCCTACTTCACACAGAGAATGAACAAAACAGAGCTTTGTAAGGCATaGAGTATTAAACCCTGCCTC | + |
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Preference number: 4 (lower is better) Translates to: FLQIMKDLPYFTQRMNKTELCKA*SIKPCL Trigger: GAGGCAGGGTTTAATACTGCATGCCTTACAAAGCTC...TGTTTTGTTCATTCTCTGTGTGAAGTAGGGCAGGTCCTTCATAATTTGAAGGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022062.8 |
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| CDS-3UTR CCA 90 bp | TTGAGAAAGGGTTTATTTGGCTTACAATTGCTGGTTAAAGTCCTTCATTTCAAGTTGATGCCAGGTCCTTaGCAACAGGTGCGTATCTCT | + |
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Preference number: 4 (lower is better) Translates to: LRKGLFGLQLLVKVLHFKLMPGP*QQVRIS Trigger: AGAGATACGCACCTGTTGCCAAGGACCTGGCATCAA...CTTGAAATGAAGGACTTTAACCAGCAATTGTAAGCCAAATAAACCCTTTCTCAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022062.8 |
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| CDS-3UTR CCA 90 bp | AAGGGTTTATTTGGCTTACAATTGCTGGTTAAAGTCCTTCATTTCAAGGAAGTCACAAATTCTAAGTCCTaGCAAGGCAAACCAGCCCTA | + |
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Preference number: 4 (lower is better) Translates to: KGLFGLQLLVKVLHFKEVTNSKS*QGKPAL Trigger: TAGGGCTGGTTTGCCTTGCCAGGACTTAGAATTTGT...GACTTCCTTGAAATGAAGGACTTTAACCAGCAATTGTAAGCCAAATAAACCCTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022062.8 |
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| CDS-3UTR CCA 90 bp | GAAAGGGTTTATTTGGCTTACAATTGCTGGTTAAAGTCCTTCATTTCAAGGAAGCACCGTATATACCTGTaGGGTGGAACTGAACAAATT | + |
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Preference number: 4 (lower is better) Translates to: ERVYLAYNCWLKSFISRKHRIYL*GGTEQI Trigger: AATTTGTTCAGTTCCACCCCACAGGTATATACGGTG...CTTCCTTGAAATGAAGGACTTTAACCAGCAATTGTAAGCCAAATAAACCCTTTC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022062.8 |
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| CDS-3UTR CAA 90 bp | TTGAGAAAGGGTTTATTTGGCTTACAATTGCTGGTTAAAGTCCTTCATTTCAAGGCCGCAGGTCTGTTTTaGGAGTGTTCCTGGCCACGC | + |
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Preference number: 5 (lower is better) Translates to: LRKGLFGLQLLVKVLHFKAAGLF*ECSWPR Trigger: GCGTGGCCAGGAACACTCCAAAAACAGACCTGCGGC...CTTGAAATGAAGGACTTTAACCAGCAATTGTAAGCCAAATAAACCCTTTCTCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022062.8 |
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| CDS-3UTR CAA 90 bp | AATAACTGCATGCATGGGGAAGGCTCAGCTTGCTCTTATACAGTCCAGACTGATTACTCCAAAGTAACCTaGCCAGTCTTGATGTCCACA | + |
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Preference number: 5 (lower is better) Translates to: NNCMHGEGSACSYTVQTDYSKVT*PVLMST Trigger: TGTGGACATCAAGACTGGCAAGGTTACTTTGGAGTA...ATCAGTCTGGACTGTATAAGAGCAAGCTGAGCCTTCCCCATGCATGCAGTTATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022062.8 |
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| CDS-3UTR CAA 90 bp | ATTTCAAGGAAGTCAGGGCATGAACTTGAAGAAACTAGTTACATTCACAGTGAGGTAACCTTGCCAGTCTaGATGTCCACATATGAGAGG | + |
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Preference number: 5 (lower is better) Translates to: ISRKSGHELEETSYIHSEVTLPV*MSTYER Trigger: CCTCTCATATGTGGACATCAAGACTGGCAAGGTTAC...CTCACTGTGAATGTAACTAGTTTCTTCAAGTTCATGCCCTGACTTCCTTGAAAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022062.8 |
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| CDS-3UTR CAA 90 bp | ACAGAGAATGAACAAAACAATACTTGTGCTGCAGCTAGACAGCGGAAGAAAATTCATGAACCTTTCACCTaGACTGTTGATGAGAATCCC | + |
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Preference number: 5 (lower is better) Translates to: TENEQNNTCAAARQRKKIHEPFT*TVDENP Trigger: GGGATTCTCATCAACAGTCAAGGTGAAAGGTTCATG...AATTTTCTTCCGCTGTCTAGCTGCAGCACAAGTATTGTTTTGTTCATTCTCTGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022062.8 |
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| CDS CCA 72 bp | CTACAAGGTCCAAGAGAGAATTTGCTCCAAGCCGGTTaGCACCATGCACTGAGGCGCAGGCAGCCTCCCCAC | + |
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Preference number: 6 (lower is better) Translates to: LQGPRENLLQAG*HHALRRRQPPH Trigger: GTGGGGAGGCTGCCTGCGCCTCAGTGCATGGTGCCAACCGGCTTGGAGCAAATTCTCTCTTGGACCTTGTAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022062.8 |
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| CDS CAA 72 bp | ACTACAAGGTCCAAGAGAGAATTTGCTCCAAGCCGGTaGGCACCATGCACTGAGGCGCAGGCAGCCTCCCCA | + |
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Preference number: 6 (lower is better) Translates to: TTRSKREFAPSR*APCTEAQAASP Trigger: TGGGGAGGCTGCCTGCGCCTCAGTGCATGGTGCCAACCGGCTTGGAGCAAATTCTCTCTTGGACCTTGTAGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022062.8 |
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| CDS CCA 72 bp | GGCCACAGCCTCTTCCTTCACGGATCTCAAGAGTCATaGATCGAGACACAACATCTCTTGATGCCAGGTCCT | + |
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Preference number: 6 (lower is better) Translates to: GHSLFLHGSQES*IETQHLLMPGP Trigger: AGGACCTGGCATCAAGAGATGTTGTGTCTCGATCCATGACTCTTGAGATCCGTGAAGGAAGAGGCTGTGGCC 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022062.8 |
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| CDS TCA 72 bp | TTAGCTGATGCCTTCTTGTTCTCACCAACAGAGAAGTaGAAGCCGCAGGTCTGTTTTTGGAGTGTTCCTGGC | + |
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Preference number: 6 (lower is better) Translates to: LADAFLFSPTEK*KPQVCFWSVPG Trigger: GCCAGGAACACTCCAAAAACAGACCTGCGGCTTTCACTTCTCTGTTGGTGAGAACAAGAAGGCATCAGCTAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000022062.8 ENSMUST00000221594.2 |
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| CDS CAA 72 bp | GTCTTGTCGATAACAGGTCTGTACTCCAAAGTAACCTaGCCAGTCTTGATGTCCACATATGAGAGGGTGTGC | + |
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Preference number: 6 (lower is better) Translates to: VLSITGLYSKVT*PVLMSTYERVC Trigger: GCACACCCTCTCATATGTGGACATCAAGACTGGCAAGGTTACTTTGGAGTACAGACCTGTTATCGACAAGAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022062.8 |
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