RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SDF2L1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022769

Ensembl transcript IDs: ENSMUST00000023453.10

Found 60 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ATAAAGGCACTTGAGGGCCCCTACAAACAAAGTCTTACACAAGAGTaGCCCCGAGATTGCCACTCAGCCACCCTCCCATCACTCATCTGG +
Preference number: 1 (lower is better)
Translates to: IKALEGPYKQSLTQE*PRDCHSATLPSLIW
Trigger: CCAGATGAGTGATGGGAGGGTGGCTGAGTGGCAATCTCGGGGTCACTCTTGTGTAAGACTTTGTTTGTAGGGGCCCTCAAGTGCCTTTAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023453.10
3UTR-3UTR TCA 90 bp ATAAAAATGAGTTTATTGAACAGGTTGGGGCCAGTTGTGGTGGTGTACACCTTTAGGTGGATCTCTCTGTaGGTTCCAGGCCTGCCAAGG +
Preference number: 2 (lower is better)
Translates to: IKMSLLNRLGPVVVVYTFRWISL*VPGLPR
Trigger: CCTTGGCAGGCCTGGAACTCACAGAGAGATCCACCT...AAAGGTGTACACCACCACAACTGGCCCCAACCTGTTCAATAAACTCATTTTTAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023453.10
3UTR-3UTR GCA 90 bp AGTTTATTGAACAGGTTGGGGCCAGTTGTGGTGGTGTACACCTTTAATACCAGCAAAAATTTCAGCAGGTaGTTGAGACAGGTGAGATGG +
Preference number: 2 (lower is better)
Translates to: SLLNRLGPVVVVYTFNTSKNFSR*LRQVRW
Trigger: CCATCTCACCTGTCTCAAGCACCTGCTGAAATTTTT...GCTGGTATTAAAGGTGTACACCACCACAACTGGCCCCAACCTGTTCAATAAACT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023453.10
3UTR TCA 72 bp CTTGAGGGCCCCTACAAACAAAGTCTTACACAAGAGTaGCCCCGAGATTGCCACTCAGCCACCCTCCCATCA +
Preference number: 3 (lower is better)
Translates to: LEGPYKQSLTQE*PRDCHSATLPS
Trigger: TGATGGGAGGGTGGCTGAGTGGCAATCTCGGGGTCACTCTTGTGTAAGACTTTGTTTGTAGGGGCCCTCAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023453.10
3UTR-3UTR CAA 90 bp ATAAAAATGAGTTTATTGAACAGGTTGGGGCCAGTTGTGGTGGTGTACACCTTTAGAGTGACCCCGAGATaGCCACTCAGCCACCCTCCC +
Preference number: 3 (lower is better)
Translates to: IKMSLLNRLGPVVVVYTFRVTPR*PLSHPP
Trigger: GGGAGGGTGGCTGAGTGGCAATCTCGGGGTCACTCT...AAAGGTGTACACCACCACAACTGGCCCCAACCTGTTCAATAAACTCATTTTTAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000023453.10
CDS-3UTR CCA 90 bp GTCTTACACAAGAGTGACCCCGAGATTGCCACTCAGCCACCCTCCCATCACTCATCACTAGCCCGGCGCTaGCCTTGGACGCGCCCCCAC +
Preference number: 4 (lower is better)
Translates to: VLHKSDPEIATQPPSHHSSLARR*PWTRPH
Trigger: GTGGGGGCGCGTCCAAGGCCAGCGCCGGGCTAGTGA...TGAGTGATGGGAGGGTGGCTGAGTGGCAATCTCGGGGTCACTCTTGTGTAAGAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023453.10
CDS-3UTR CCA 90 bp GTCTTACACAAGAGTGACCCCGAGATTGCCACTCAGCCACCCTCCCATCACTCAGAGGTGCCCACGTGCTaGAAGCGGACACTGGCCTCT +
Preference number: 4 (lower is better)
Translates to: VLHKSDPEIATQPPSHHSEVPTC*KRTLAS
Trigger: AGAGGCCAGTGTCCGCTTCCAGCACGTGGGCACCTC...TGAGTGATGGGAGGGTGGCTGAGTGGCAATCTCGGGGTCACTCTTGTGTAAGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023453.10
CDS-3UTR CCA 90 bp GTCTTACACAAGAGTGACCCCGAGATTGCCACTCAGCCACCCTCCCATCACTCAAGCGGCGACGGGAAGTaGTGCGTGTGCAGGTTCTTG +
Preference number: 4 (lower is better)
Translates to: VLHKSDPEIATQPPSHHSSGDGK*CVCRFL
Trigger: CAAGAACCTGCACACGCACCACTTCCCGTCGCCGCT...TGAGTGATGGGAGGGTGGCTGAGTGGCAATCTCGGGGTCACTCTTGTGTAAGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023453.10
CDS-3UTR CCA 90 bp AGTTTATTGAACAGGTTGGGGCCAGTTGTGGTGGTGTACACCTTTAATACCAGCTTGCCCACAGCGCACTaGGAGTCCGCGCGGGCACCC +
Preference number: 4 (lower is better)
Translates to: SLLNRLGPVVVVYTFNTSLPTAH*ESARAP
Trigger: GGGTGCCCGCGCGGACTCCCAGTGCGCTGTGGGCAA...GCTGGTATTAAAGGTGTACACCACCACAACTGGCCCCAACCTGTTCAATAAACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023453.10
CDS-3UTR TCA 90 bp GTCTTACACAAGAGTGACCCCGAGATTGCCACTCAGCCACCCTCCCATCACTCATGCCAGATCCGTATTTaGTGTCGTGTGAGTGCAGCC +
Preference number: 4 (lower is better)
Translates to: VLHKSDPEIATQPPSHHSCQIRI*CRVSAA
Trigger: GGCTGCACTCACACGACATCAAATACGGATCTGGCA...TGAGTGATGGGAGGGTGGCTGAGTGGCAATCTCGGGGTCACTCTTGTGTAAGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023453.10
CDS-3UTR TCA 90 bp GTCTTACACAAGAGTGACCCCGAGATTGCCACTCAGCCACCCTCCCATCACTCACATACTGTTCACCAGTaGCCGACAGGAACACAGAGG +
Preference number: 4 (lower is better)
Translates to: VLHKSDPEIATQPPSHHSHTVHQ*PTGTQR
Trigger: CCTCTGTGTTCCTGTCGGTCACTGGTGAACAGTATG...TGAGTGATGGGAGGGTGGCTGAGTGGCAATCTCGGGGTCACTCTTGTGTAAGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023453.10
CDS-3UTR GCA 90 bp GTCTTACACAAGAGTGACCCCGAGATTGCCACTCAGCCACCCTCCCATCACTCAACCCGTGGAGAGATCTaGTCCAGGCTTGATGAAGAT +
Preference number: 4 (lower is better)
Translates to: VLHKSDPEIATQPPSHHSTRGEI*SRLDED
Trigger: ATCTTCATCAAGCCTGGAGCAGATCTCTCCACGGGT...TGAGTGATGGGAGGGTGGCTGAGTGGCAATCTCGGGGTCACTCTTGTGTAAGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023453.10
CDS-3UTR TCA 90 bp AGTTTATTGAACAGGTTGGGGCCAGTTGTGGTGGTGTACACCTTTAATACCAGCCTTTGTGGTGGGTGTTaGGCAGCTTCAGCACTGACC +
Preference number: 4 (lower is better)
Translates to: SLLNRLGPVVVVYTFNTSLCGGC*AASALT
Trigger: GGTCAGTGCTGAAGCTGCTCAACACCCACCACAAAG...GCTGGTATTAAAGGTGTACACCACCACAACTGGCCCCAACCTGTTCAATAAACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023453.10
CDS-3UTR GCA 90 bp ATAAAAATGAGTTTATTGAACAGGTTGGGGCCAGTTGTGGTGGTGTACACCTTTGGCGACGGGAAGTGGTaGGTGTGCAGGTTCTTGCCG +
Preference number: 4 (lower is better)
Translates to: IKMSLLNRLGPVVVVYTFGDGKW*VCRFLP
Trigger: CGGCAAGAACCTGCACACGCACCACTTCCCGTCGCC...AAAGGTGTACACCACCACAACTGGCCCCAACCTGTTCAATAAACTCATTTTTAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023453.10
CDS-3UTR GCA 90 bp AGTAATAAAAATGAGTTTATTGAACAGGTTGGGGCCAGTTGTGGTGGTGTACACACAGAGGTGCCCACGTaGTGGAAGCGGACACTGGCC +
Preference number: 4 (lower is better)
Translates to: SNKNEFIEQVGASCGGVHTEVPT*WKRTLA
Trigger: GGCCAGTGTCCGCTTCCAGCACGTGGGCACCTCTGT...GTGTACACCACCACAACTGGCCCCAACCTGTTCAATAAACTCATTTTTATTACT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023453.10
CDS-3UTR TCA 90 bp AGTAATAAAAATGAGTTTATTGAACAGGTTGGGGCCAGTTGTGGTGGTGTACACGCACTAGGCATGCCATaGACCTCATGCTGCCCACGG +
Preference number: 4 (lower is better)
Translates to: SNKNEFIEQVGASCGGVHALGMP*TSCCPR
Trigger: CCGTGGGCAGCATGAGGTTCATGGCATGCCTAGTGC...GTGTACACCACCACAACTGGCCCCAACCTGTTCAATAAACTCATTTTTATTACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023453.10
CDS-3UTR GCA 90 bp AGTAATAAAAATGAGTTTATTGAACAGGTTGGGGCCAGTTGTGGTGGTGTACACGGGAAGTGGTGCGTGTaGAGGTTCTTGCCGGTGAGC +
Preference number: 4 (lower is better)
Translates to: SNKNEFIEQVGASCGGVHGKWCV*RFLPVS
Trigger: GCTCACCGGCAAGAACCTGCACACGCACCACTTCCC...GTGTACACCACCACAACTGGCCCCAACCTGTTCAATAAACTCATTTTTATTACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023453.10
CDS-3UTR CCA 90 bp AGTAATAAAAATGAGTTTATTGAACAGGTTGGGGCCAGTTGTGGTGGTGTACACGCTGGAAGCGGACACTaGCCTCTCGCTCCCAGTGTT +
Preference number: 4 (lower is better)
Translates to: SNKNEFIEQVGASCGGVHAGSGH*PLAPSV
Trigger: AACACTGGGAGCGAGAGGCCAGTGTCCGCTTCCAGC...GTGTACACCACCACAACTGGCCCCAACCTGTTCAATAAACTCATTTTTATTACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023453.10
CDS-3UTR CCA 90 bp AGTTTATTGAACAGGTTGGGGCCAGTTGTGGTGGTGTACACCTTTAATACCAGCCATGCTGCCCACGGATaGGGTTACCATACTGTTCAC +
Preference number: 4 (lower is better)
Translates to: SLLNRLGPVVVVYTFNTSHAAHG*GYHTVH
Trigger: GTGAACAGTATGGTAACCCCATCCGTGGGCAGCATG...GCTGGTATTAAAGGTGTACACCACCACAACTGGCCCCAACCTGTTCAATAAACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023453.10
CDS-3UTR TCA 90 bp AGTTTATTGAACAGGTTGGGGCCAGTTGTGGTGGTGTACACCTTTAATACCAGCGTATTTGATGTCGTGTaGGTGCAGCCGCACTTTGTG +
Preference number: 4 (lower is better)
Translates to: SLLNRLGPVVVVYTFNTSVFDVV*VQPHFV
Trigger: CACAAAGTGCGGCTGCACTCACACGACATCAAATAC...GCTGGTATTAAAGGTGTACACCACCACAACTGGCCCCAACCTGTTCAATAAACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023453.10
CDS-3UTR GCA 90 bp AGTAATAAAAATGAGTTTATTGAACAGGTTGGGGCCAGTTGTGGTGGTGTACACACAGGAACACAGAGGTaGCCACGTGCTGGAAGCGGA +
Preference number: 4 (lower is better)
Translates to: SNKNEFIEQVGASCGGVHTGTQR*PRAGSG
Trigger: TCCGCTTCCAGCACGTGGGCACCTCTGTGTTCCTGT...GTGTACACCACCACAACTGGCCCCAACCTGTTCAATAAACTCATTTTTATTACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023453.10
CDS-3UTR TCA 90 bp ATAAAAATGAGTTTATTGAACAGGTTGGGGCCAGTTGTGGTGGTGTACACCTTTGCCTTCCACGTGTTGTaGGCATTGGCACTAGGCATG +
Preference number: 4 (lower is better)
Translates to: IKMSLLNRLGPVVVVYTFAFHVL*ALALGM
Trigger: CATGCCTAGTGCCAATGCTCACAACACGTGGAAGGC...AAAGGTGTACACCACCACAACTGGCCCCAACCTGTTCAATAAACTCATTTTTAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023453.10
CDS-3UTR CCA 90 bp ATAAAAATGAGTTTATTGAACAGGTTGGGGCCAGTTGTGGTGGTGTACACCTTTTCACCTCCTGGTTGTTaGATAGCGGCGACGGGAAGT +
Preference number: 4 (lower is better)
Translates to: IKMSLLNRLGPVVVVYTFSPPGC*IAATGS
Trigger: ACTTCCCGTCGCCGCTATCCAACAACCAGGAGGTGA...AAAGGTGTACACCACCACAACTGGCCCCAACCTGTTCAATAAACTCATTTTTAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000023453.10
CDS-3UTR GCA 90 bp ATAAAAATGAGTTTATTGAACAGGTTGGGGCCAGTTGTGGTGGTGTACACCTTTTTGATGTCGTGTGAGTaGAGCCGCACTTTGTGGTGG +
Preference number: 4 (lower is better)
Translates to: IKMSLLNRLGPVVVVYTFLMSCE*SRTLWW
Trigger: CCACCACAAAGTGCGGCTGCACTCACACGACATCAA...AAAGGTGTACACCACCACAACTGGCCCCAACCTGTTCAATAAACTCATTTTTAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000023453.10
CDS-3UTR GCA 90 bp TTAGTAATAAAAATGAGTTTATTGAACAGGTTGGGGCCAGTTGTGGTGGTGTACTCTCGCTCCCAGTGTTaGCCAGAACATCGGACTGTC +
Preference number: 4 (lower is better)
Translates to: LVIKMSLLNRLGPVVVVYSRSQC*PEHRTV
Trigger: GACAGTCCGATGTTCTGGGCAACACTGGGAGCGAGA...GTACACCACCACAACTGGCCCCAACCTGTTCAATAAACTCATTTTTATTACTAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023453.10
CDS-3UTR GCA 90 bp AGTAATAAAAATGAGTTTATTGAACAGGTTGGGGCCAGTTGTGGTGGTGTACACGAAGATTCCTTCCATTaGCTTCCACGTGTTGTGAGC +
Preference number: 4 (lower is better)
Translates to: SNKNEFIEQVGASCGGVHEDSFH*LPRVVS
Trigger: GCTCACAACACGTGGAAGGCAATGGAAGGAATCTTC...GTGTACACCACCACAACTGGCCCCAACCTGTTCAATAAACTCATTTTTATTACT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023453.10
CDS CCA 90 bp GCCGGTGAGCACGTGCGTGAGCCGCACTGCTTGCCCACAGCGCACTaGGAGTCCGCGCGGGCACCCACCCTCGGAGCCGCCGCGAATCCG +
Preference number: 5 (lower is better)
Translates to: AGEHVREPHCLPTAH*ESARAPTLGAAANP
Trigger: CGGATTCGCGGCGGCTCCGAGGGTGGGTGCCCGCGCGGACTCCCAGTGCGCTGTGGGCAAGCAGTGCGGCTCACGCACGTGCTCACCGGC
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023453.10
CDS GCA 90 bp GTGTGCAGGTTCTTGCCGGTGAGCACGTGCGTGAGCCGCACTGCTTaGCCACAGCGCACTGGGAGTCCGCGCGGGCACCCACCCTCGGAG +
Preference number: 5 (lower is better)
Translates to: VCRFLPVSTCVSRTA*PQRTGSPRGHPPSE
Trigger: CTCCGAGGGTGGGTGCCCGCGCGGACTCCCAGTGCGCTGTGGGCAAGCAGTGCGGCTCACGCACGTGCTCACCGGCAAGAACCTGCACAC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023453.10
CDS GCA 90 bp GTGCGTGTGCAGGTTCTTGCCGGTGAGCACGTGCGTGAGCCGCACTaGTTGCCCACAGCGCACTGGGAGTCCGCGCGGGCACCCACCCTC +
Preference number: 5 (lower is better)
Translates to: VRVQVLAGEHVREPH*LPTAHWESARAPTL
Trigger: GAGGGTGGGTGCCCGCGCGGACTCCCAGTGCGCTGTGGGCAAGCAGTGCGGCTCACGCACGTGCTCACCGGCAAGAACCTGCACACGCAC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023453.10
CDS CCA 90 bp GCGGGCACCCACCCTCGGAGCCGCCGCGAATCCGCCAGTAACTATTaGCATCGTCGGACTCCTCCACGCCGGTTACCGACTGTTGGCCGC +
Preference number: 5 (lower is better)
Translates to: AGTHPRSRRESASNY*HRRTPPRRLPTVGR
Trigger: GCGGCCAACAGTCGGTAACCGGCGTGGAGGAGTCCGACGATGCCAATAGTTACTGGCGGATTCGCGGCGGCTCCGAGGGTGGGTGCCCGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023453.10
CDS GCA 90 bp CTCACCTCCTGGTTGTTGGATAGCGGCGACGGGAAGTGGTGCGTGTaGAGGTTCTTGCCGGTGAGCACGTGCGTGAGCCGCACTGCTTGC +
Preference number: 5 (lower is better)
Translates to: LTSWLLDSGDGKWCV*RFLPVSTCVSRTAC
Trigger: GCAAGCAGTGCGGCTCACGCACGTGCTCACCGGCAAGAACCTGCACACGCACCACTTCCCGTCGCCGCTATCCAACAACCAGGAGGTGAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023453.10
CDS GCA 90 bp GTGCCCACGTGCTGGAAGCGGACACTGGCCTCTCGCTCCCAGTGTTaGCCAGAACATCGGACTGTCCACAGGTCCAGGTCATCACCCTCA +
Preference number: 5 (lower is better)
Translates to: VPTCWKRTLASRSQC*PEHRTVHRSRSSPS
Trigger: TGAGGGTGATGACCTGGACCTGTGGACAGTCCGATGTTCTGGGCAACACTGGGAGCGAGAGGCCAGTGTCCGCTTCCAGCACGTGGGCAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023453.10
CDS CCA 90 bp CCAAAAGCACTCACCTCCTGGTTGTTGGATAGCGGCGACGGGAAGTaGTGCGTGTGCAGGTTCTTGCCGGTGAGCACGTGCGTGAGCCGC +
Preference number: 5 (lower is better)
Translates to: PKALTSWLLDSGDGK*CVCRFLPVSTCVSR
Trigger: GCGGCTCACGCACGTGCTCACCGGCAAGAACCTGCACACGCACCACTTCCCGTCGCCGCTATCCAACAACCAGGAGGTGAGTGCTTTTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023453.10
CDS TCA 90 bp GAACCTCATGCTGCCCACGGATGGGGTTACCATACTGTTCACCAGTaGCCGACAGGAACACAGAGGTGCCCACGTGCTGGAAGCGGACAC +
Preference number: 5 (lower is better)
Translates to: EPHAAHGWGYHTVHQ*PTGTQRCPRAGSGH
Trigger: GTGTCCGCTTCCAGCACGTGGGCACCTCTGTGTTCCTGTCGGTCACTGGTGAACAGTATGGTAACCCCATCCGTGGGCAGCATGAGGTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023453.10
CDS-3UTR CAA 90 bp AGTTTATTGAACAGGTTGGGGCCAGTTGTGGTGGTGTACACCTTTAATACCAGCGCAGCCCCAGCAGCGTaGGCCCCGCTACCCTGCCCC +
Preference number: 5 (lower is better)
Translates to: SLLNRLGPVVVVYTFNTSAAPAA*APLPCP
Trigger: GGGGCAGGGTAGCGGGGCCAACGCTGCTGGGGCTGC...GCTGGTATTAAAGGTGTACACCACCACAACTGGCCCCAACCTGTTCAATAAACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000023453.10
CDS-3UTR CAA 90 bp GTCTTACACAAGAGTGACCCCGAGATTGCCACTCAGCCACCCTCCCATCACTCATGCGTGTGCAGGTTCTaGCCGGTGAGCACGTGCGTG +
Preference number: 5 (lower is better)
Translates to: VLHKSDPEIATQPPSHHSCVCRF*PVSTCV
Trigger: CACGCACGTGCTCACCGGCAAGAACCTGCACACGCA...TGAGTGATGGGAGGGTGGCTGAGTGGCAATCTCGGGGTCACTCTTGTGTAAGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023453.10
CDS-3UTR CAA 90 bp GTCTTACACAAGAGTGACCCCGAGATTGCCACTCAGCCACCCTCCCATCACTCAGAGTGCAGCCGCACTTaGTGGTGGGTGTTGAGCAGC +
Preference number: 5 (lower is better)
Translates to: VLHKSDPEIATQPPSHHSECSRT*WWVLSS
Trigger: GCTGCTCAACACCCACCACAAAGTGCGGCTGCACTC...TGAGTGATGGGAGGGTGGCTGAGTGGCAATCTCGGGGTCACTCTTGTGTAAGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023453.10
CDS TCA 90 bp GGTTACCGACTGTTGGCCGCTGCCAGATCCGTATTTGATGTCGTGTaGGTGCAGCCGCACTTTGTGGTGGGTGTTGAGCAGCTTCAGCAC +
Preference number: 5 (lower is better)
Translates to: GYRLLAAARSVFDVV*VQPHFVVGVEQLQH
Trigger: GTGCTGAAGCTGCTCAACACCCACCACAAAGTGCGGCTGCACTCACACGACATCAAATACGGATCTGGCAGCGGCCAACAGTCGGTAACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023453.10
CDS GCA 90 bp ACCCGTGGAGAGATCTGCTCCAGGCTTGATGAAGATTCCTTCCATTaGCTTCCACGTGTTGTGAGCATTGGCACTAGGCATGCCATGAAC +
Preference number: 5 (lower is better)
Translates to: TRGEICSRLDEDSFH*LPRVVSIGTRHAMN
Trigger: GTTCATGGCATGCCTAGTGCCAATGCTCACAACACGTGGAAGGCAATGGAAGGAATCTTCATCAAGCCTGGAGCAGATCTCTCCACGGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023453.10
CDS-3UTR CAA 90 bp AGTAATAAAAATGAGTTTATTGAACAGGTTGGGGCCAGTTGTGGTGGTGTACACGCACTCACCTCCTGGTaGTTGGATAGCGGCGACGGG +
Preference number: 5 (lower is better)
Translates to: SNKNEFIEQVGASCGGVHALTSW*LDSGDG
Trigger: CCCGTCGCCGCTATCCAACAACCAGGAGGTGAGTGC...GTGTACACCACCACAACTGGCCCCAACCTGTTCAATAAACTCATTTTTATTACT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023453.10
CDS-3UTR CAA 90 bp TTAGTAATAAAAATGAGTTTATTGAACAGGTTGGGGCCAGTTGTGGTGGTGTACCTCACCTCCTGGTTGTaGGATAGCGGCGACGGGAAG +
Preference number: 5 (lower is better)
Translates to: LVIKMSLLNRLGPVVVVYLTSWL*DSGDGK
Trigger: CTTCCCGTCGCCGCTATCCAACAACCAGGAGGTGAG...GTACACCACCACAACTGGCCCCAACCTGTTCAATAAACTCATTTTTATTACTAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023453.10
CDS-3UTR CAA 90 bp AGTAATAAAAATGAGTTTATTGAACAGGTTGGGGCCAGTTGTGGTGGTGTACACACTTTGTGGTGGGTGTaGAGCAGCTTCAGCACTGAC +
Preference number: 5 (lower is better)
Translates to: SNKNEFIEQVGASCGGVHTLWWV*SSFSTD
Trigger: GTCAGTGCTGAAGCTGCTCAACACCCACCACAAAGT...GTGTACACCACCACAACTGGCCCCAACCTGTTCAATAAACTCATTTTTATTACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023453.10
CDS-3UTR CAA 90 bp TTAGTAATAAAAATGAGTTTATTGAACAGGTTGGGGCCAGTTGTGGTGGTGTACAGATCTGCTCCAGGCTaGATGAAGATTCCTTCCATT +
Preference number: 5 (lower is better)
Translates to: LVIKMSLLNRLGPVVVVYRSAPG*MKIPSI
Trigger: AATGGAAGGAATCTTCATCAAGCCTGGAGCAGATCT...GTACACCACCACAACTGGCCCCAACCTGTTCAATAAACTCATTTTTATTACTAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023453.10
CDS CCA 72 bp CACGTGCGTGAGCCGCACTGCTTGCCCACAGCGCACTaGGAGTCCGCGCGGGCACCCACCCTCGGAGCCGCC +
Preference number: 6 (lower is better)
Translates to: HVREPHCLPTAH*ESARAPTLGAA
Trigger: GGCGGCTCCGAGGGTGGGTGCCCGCGCGGACTCCCAGTGCGCTGTGGGCAAGCAGTGCGGCTCACGCACGTG
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023453.10
CDS CAA 72 bp GTTCTTGCCGGTGAGCACGTGCGTGAGCCGCACTGCTaGCCCACAGCGCACTGGGAGTCCGCGCGGGCACCC +
Preference number: 6 (lower is better)
Translates to: VLAGEHVREPHC*PTAHWESARAP
Trigger: GGGTGCCCGCGCGGACTCCCAGTGCGCTGTGGGCAAGCAGTGCGGCTCACGCACGTGCTCACCGGCAAGAAC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023453.10
CDS CAA 90 bp CGTGTGCAGGTTCTTGCCGGTGAGCACGTGCGTGAGCCGCACTGCTaGCCCACAGCGCACTGGGAGTCCGCGCGGGCACCCACCCTCGGA +
Preference number: 6 (lower is better)
Translates to: RVQVLAGEHVREPHC*PTAHWESARAPTLG
Trigger: TCCGAGGGTGGGTGCCCGCGCGGACTCCCAGTGCGCTGTGGGCAAGCAGTGCGGCTCACGCACGTGCTCACCGGCAAGAACCTGCACACG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023453.10
CDS GCA 72 bp TTCTTGCCGGTGAGCACGTGCGTGAGCCGCACTGCTTaGCCACAGCGCACTGGGAGTCCGCGCGGGCACCCA +
Preference number: 6 (lower is better)
Translates to: FLPVSTCVSRTA*PQRTGSPRGHP
Trigger: TGGGTGCCCGCGCGGACTCCCAGTGCGCTGTGGGCAAGCAGTGCGGCTCACGCACGTGCTCACCGGCAAGAA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023453.10
CDS GCA 72 bp CAGGTTCTTGCCGGTGAGCACGTGCGTGAGCCGCACTaGTTGCCCACAGCGCACTGGGAGTCCGCGCGGGCA +
Preference number: 6 (lower is better)
Translates to: QVLAGEHVREPH*LPTAHWESARA
Trigger: TGCCCGCGCGGACTCCCAGTGCGCTGTGGGCAAGCAGTGCGGCTCACGCACGTGCTCACCGGCAAGAACCTG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023453.10
CDS CAA 72 bp GATAGCGGCGACGGGAAGTGGTGCGTGTGCAGGTTCTaGCCGGTGAGCACGTGCGTGAGCCGCACTGCTTGC +
Preference number: 6 (lower is better)
Translates to: DSGDGKWCVCRF*PVSTCVSRTAC
Trigger: GCAAGCAGTGCGGCTCACGCACGTGCTCACCGGCAAGAACCTGCACACGCACCACTTCCCGTCGCCGCTATC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023453.10
CDS CAA 90 bp TGGTTGTTGGATAGCGGCGACGGGAAGTGGTGCGTGTGCAGGTTCTaGCCGGTGAGCACGTGCGTGAGCCGCACTGCTTGCCCACAGCGC +
Preference number: 6 (lower is better)
Translates to: WLLDSGDGKWCVCRF*PVSTCVSRTACPQR
Trigger: GCGCTGTGGGCAAGCAGTGCGGCTCACGCACGTGCTCACCGGCAAGAACCTGCACACGCACCACTTCCCGTCGCCGCTATCCAACAACCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023453.10
CDS CCA 72 bp CACCCTCGGAGCCGCCGCGAATCCGCCAGTAACTATTaGCATCGTCGGACTCCTCCACGCCGGTTACCGACT +
Preference number: 6 (lower is better)
Translates to: HPRSRRESASNY*HRRTPPRRLPT
Trigger: AGTCGGTAACCGGCGTGGAGGAGTCCGACGATGCCAATAGTTACTGGCGGATTCGCGGCGGCTCCGAGGGTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023453.10
CDS CCA 72 bp CCAGTGACCGACAGGAACACAGAGGTGCCCACGTGCTaGAAGCGGACACTGGCCTCTCGCTCCCAGTGTTGC +
Preference number: 6 (lower is better)
Translates to: PVTDRNTEVPTC*KRTLASRSQCC
Trigger: GCAACACTGGGAGCGAGAGGCCAGTGTCCGCTTCCAGCACGTGGGCACCTCTGTGTTCCTGTCGGTCACTGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023453.10
CDS CAA 90 bp GGTGCCCACGTGCTGGAAGCGGACACTGGCCTCTCGCTCCCAGTGTaGCCCAGAACATCGGACTGTCCACAGGTCCAGGTCATCACCCTC +
Preference number: 6 (lower is better)
Translates to: GAHVLEADTGLSLPV*PRTSDCPQVQVITL
Trigger: GAGGGTGATGACCTGGACCTGTGGACAGTCCGATGTTCTGGGCAACACTGGGAGCGAGAGGCCAGTGTCCGCTTCCAGCACGTGGGCACC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023453.10
CDS CCA 72 bp CTCACCTCCTGGTTGTTGGATAGCGGCGACGGGAAGTaGTGCGTGTGCAGGTTCTTGCCGGTGAGCACGTGC +
Preference number: 6 (lower is better)
Translates to: LTSWLLDSGDGK*CVCRFLPVSTC
Trigger: GCACGTGCTCACCGGCAAGAACCTGCACACGCACCACTTCCCGTCGCCGCTATCCAACAACCAGGAGGTGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023453.10
CDS CAA 72 bp GTGCTGGAAGCGGACACTGGCCTCTCGCTCCCAGTGTaGCCCAGAACATCGGACTGTCCACAGGTCCAGGTC +
Preference number: 6 (lower is better)
Translates to: VLEADTGLSLPV*PRTSDCPQVQV
Trigger: GACCTGGACCTGTGGACAGTCCGATGTTCTGGGCAACACTGGGAGCGAGAGGCCAGTGTCCGCTTCCAGCAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023453.10
CDS GCA 72 bp TGCTGGAAGCGGACACTGGCCTCTCGCTCCCAGTGTTaGCCAGAACATCGGACTGTCCACAGGTCCAGGTCA +
Preference number: 6 (lower is better)
Translates to: CWKRTLASRSQC*PEHRTVHRSRS
Trigger: TGACCTGGACCTGTGGACAGTCCGATGTTCTGGGCAACACTGGGAGCGAGAGGCCAGTGTCCGCTTCCAGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023453.10
CDS TCA 72 bp GCTGCCCACGGATGGGGTTACCATACTGTTCACCAGTaGCCGACAGGAACACAGAGGTGCCCACGTGCTGGA +
Preference number: 6 (lower is better)
Translates to: AAHGWGYHTVHQ*PTGTQRCPRAG
Trigger: TCCAGCACGTGGGCACCTCTGTGTTCCTGTCGGTCACTGGTGAACAGTATGGTAACCCCATCCGTGGGCAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023453.10
CDS CCA 72 bp GCATCGTCGGACTCCTCCACGCCGGTTACCGACTGTTaGCCGCTGCCAGATCCGTATTTGATGTCGTGTGAG +
Preference number: 6 (lower is better)
Translates to: ASSDSSTPVTDC*PLPDPYLMSCE
Trigger: CTCACACGACATCAAATACGGATCTGGCAGCGGCCAACAGTCGGTAACCGGCGTGGAGGAGTCCGACGATGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023453.10
CDS TCA 72 bp CTGTTGGCCGCTGCCAGATCCGTATTTGATGTCGTGTaGGTGCAGCCGCACTTTGTGGTGGGTGTTGAGCAG +
Preference number: 6 (lower is better)
Translates to: LLAAARSVFDVV*VQPHFVVGVEQ
Trigger: CTGCTCAACACCCACCACAAAGTGCGGCTGCACTCACACGACATCAAATACGGATCTGGCAGCGGCCAACAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023453.10
CDS GCA 72 bp GAGATCTGCTCCAGGCTTGATGAAGATTCCTTCCATTaGCTTCCACGTGTTGTGAGCATTGGCACTAGGCAT +
Preference number: 6 (lower is better)
Translates to: EICSRLDEDSFH*LPRVVSIGTRH
Trigger: ATGCCTAGTGCCAATGCTCACAACACGTGGAAGGCAATGGAAGGAATCTTCATCAAGCCTGGAGCAGATCTC
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023453.10