Pregenerated sensors for SDF2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000002064Ensembl transcript IDs: ENSMUST00000002133.9
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GAACTGACTAAGCCTGGGAGAGCAACCAATTCAAGTGTGAAGGGCTaGAGGTCCCAAGGCAGCACGCTCAGAGGACCTGGAGCAGGGATC | + |
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Preference number: 1 (lower is better) Translates to: ELTKPGRATNSSVKG*RSQGSTLRGPGAGI Trigger: GATCCCTGCTCCAGGTCCTCTGAGCGTGCTGCCTTGGGACCTGCAGCCCTTCACACTTGAATTGGTTGCTCTCCCAGGCTTAGTCAGTTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002133.9 |
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| 3UTR CCA 90 bp | AAGTGTGAAGGGCTGCAGGTCCCAAGGCAGCACGCTCAGAGGACCTaGAGCAGGGATCCCGCAGTAAAGCAGCAGCAGATGTCTACAAAC | + |
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Preference number: 1 (lower is better) Translates to: KCEGLQVPRQHAQRT*SRDPAVKQQQMSTN Trigger: GTTTGTAGACATCTGCTGCTGCTTTACTGCGGGATCCCTGCTCCAGGTCCTCTGAGCGTGCTGCCTTGGGACCTGCAGCCCTTCACACTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002133.9 |
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| 3UTR-3UTR CCA 90 bp | AAATTAAGAATCCATGATGCCCAGTTCCTGCGGAGTTACACTTCCCAGCTAAGACACGCTCAGAGGACCTaGAGCAGGGATCCCGCAGTA | + |
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Preference number: 2 (lower is better) Translates to: KLRIHDAQFLRSYTSQLRHAQRT*SRDPAV Trigger: TACTGCGGGATCCCTGCTCCAGGTCCTCTGAGCGTG...TCTTAGCTGGGAAGTGTAACTCCGCAGGAACTGGGCATCATGGATTCTTAATTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002133.9 |
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| 3UTR-3UTR TCA 90 bp | AACAGGAGAAATCACAAATTAAGAATCCATGATGCCCAGTTCCTGCGGAGTTACCTTCTTTTACCAGCATaGAGAAAGCTATCTCCACCT | + |
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Preference number: 2 (lower is better) Translates to: NRRNHKLRIHDAQFLRSYLLLPA*RKLSPP Trigger: AGGTGGAGATAGCTTTCTTCATGCTGGTAAAAGAAG...GTAACTCCGCAGGAACTGGGCATCATGGATTCTTAATTTGTGATTTCTCCTGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002133.9 |
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| 3UTR CCA 72 bp | GGGCTGCAGGTCCCAAGGCAGCACGCTCAGAGGACCTaGAGCAGGGATCCCGCAGTAAAGCAGCAGCAGATG | + |
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Preference number: 3 (lower is better) Translates to: GLQVPRQHAQRT*SRDPAVKQQQM Trigger: CATCTGCTGCTGCTTTACTGCGGGATCCCTGCTCCAGGTCCTCTGAGCGTGCTGCCTTGGGACCTGCAGCCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002133.9 |
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| 3UTR GCA 72 bp | AAGCCTGGGAGAGCAACCAATTCAAGTGTGAAGGGCTaGAGGTCCCAAGGCAGCACGCTCAGAGGACCTGGA | + |
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Preference number: 3 (lower is better) Translates to: KPGRATNSSVKG*RSQGSTLRGPG Trigger: TCCAGGTCCTCTGAGCGTGCTGCCTTGGGACCTGCAGCCCTTCACACTTGAATTGGTTGCTCTCCCAGGCTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002133.9 |
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| CDS-3UTR CCA 90 bp | AGGGCTGCAGGTCCCAAGGCAGCACGCTCAGAGGACCTGGAGCAGGGATCCCGCCCCTTTCACACACTGTaGCTGTCTTCCCCCGTATCC | + |
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Preference number: 4 (lower is better) Translates to: RAAGPKAARSEDLEQGSRPFHTL*LSSPVS Trigger: GGATACGGGGGAAGACAGCCACAGTGTGTGAAAGGG...GCGGGATCCCTGCTCCAGGTCCTCTGAGCGTGCTGCCTTGGGACCTGCAGCCCT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000002133.9 |
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| CDS-3UTR TCA 90 bp | CTGCAGGTCCCAAGGCAGCACGCTCAGAGGACCTGGAGCAGGGATCCCGCAGTACATTGTGGCGTGTATTaGGTAGCTTCACCACGGAGC | + |
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Preference number: 4 (lower is better) Translates to: LQVPRQHAQRTWSRDPAVHCGVY*VASPRS Trigger: GCTCCGTGGTGAAGCTACTCAATACACGCCACAATG...TACTGCGGGATCCCTGCTCCAGGTCCTCTGAGCGTGCTGCCTTGGGACCTGCAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002133.9 |
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| CDS-3UTR CCA 90 bp | AGGGCTGCAGGTCCCAAGGCAGCACGCTCAGAGGACCTGGAGCAGGGATCCCGCTGCAGTCGGACATTGTaGCGTGTATTGAGTAGCTTC | + |
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Preference number: 4 (lower is better) Translates to: RAAGPKAARSEDLEQGSRCSRTL*RVLSSF Trigger: GAAGCTACTCAATACACGCCACAATGTCCGACTGCA...GCGGGATCCCTGCTCCAGGTCCTCTGAGCGTGCTGCCTTGGGACCTGCAGCCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002133.9 |
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| CDS-3UTR TCA 90 bp | CTGACTAAGCCTGGGAGAGCAACCAATTCAAGTGTGAAGGGCTGCAGGTCCCAACTGCTGCCCACTACCTaGCCCATAGCGCACGTCGTG | + |
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Preference number: 4 (lower is better) Translates to: LTKPGRATNSSVKGCRSQLLPTT*PIAHVV Trigger: CACGACGTGCGCTATGGGTCAGGTAGTGGGCAGCAG...TTGGGACCTGCAGCCCTTCACACTTGAATTGGTTGCTCTCCCAGGCTTAGTCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002133.9 |
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| CDS-3UTR TCA 90 bp | GTCCCAAGGCAGCACGCTCAGAGGACCTGGAGCAGGGATCCCGCAGTAAAGCAGGTTTCCAGAGAGAGGTaGAGTGAAATGGTGGCTGTG | + |
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Preference number: 4 (lower is better) Translates to: VPRQHAQRTWSRDPAVKQVSRER*SEMVAV Trigger: CACAGCCACCATTTCACTTCACCTCTCTCTGGAAAC...CTGCTTTACTGCGGGATCCCTGCTCCAGGTCCTCTGAGCGTGCTGCCTTGGGAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002133.9 |
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| CDS-3UTR CCA 90 bp | GGTCCCAAGGCAGCACGCTCAGAGGACCTGGAGCAGGGATCCCGCAGTAAAGCAGTAGTTGTTCTGACTTaGCTGGGCCATACCATGTAC | + |
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Preference number: 4 (lower is better) Translates to: GPKAARSEDLEQGSRSKAVVVLT*LGHTMY Trigger: GTACATGGTATGGCCCAGCCAAGTCAGAACAACTAC...TGCTTTACTGCGGGATCCCTGCTCCAGGTCCTCTGAGCGTGCTGCCTTGGGACC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002133.9 |
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| CDS-3UTR CCA 90 bp | GAACTGACTAAGCCTGGGAGAGCAACCAATTCAAGTGTGAAGGGCTGCAGGTCCGGTGAAGTGAAATGGTaGCTGTGCAGGTTTCGACCT | + |
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Preference number: 4 (lower is better) Translates to: ELTKPGRATNSSVKGCRSGEVKW*LCRFRP Trigger: AGGTCGAAACCTGCACAGCCACCATTTCACTTCACC...GGACCTGCAGCCCTTCACACTTGAATTGGTTGCTCTCCCAGGCTTAGTCAGTTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002133.9 |
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| CDS-3UTR TCA 90 bp | CTAAGACAGGCAAGCTCCTCAACTTCTTTTACCAGCATGAAGAAAGCTATCTCCCGTACTGTTCTCCTGTaGCAGACAGCAGTACGTCAG | + |
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Preference number: 4 (lower is better) Translates to: LRQASSSTSFTSMKKAISRTVLL*QTAVRQ Trigger: CTGACGTACTGCTGTCTGTCACAGGAGAACAGTACG...GGAGATAGCTTTCTTCATGCTGGTAAAAGAAGTTGAGGAGCTTGCCTGTCTTAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002133.9 |
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| CDS-3UTR CAA 90 bp | GGTCCCAAGGCAGCACGCTCAGAGGACCTGGAGCAGGGATCCCGCAGTAAAGCAAGGTTTCGACCTGTGTaGATGTGTGTCAGACGGATG | + |
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Preference number: 5 (lower is better) Translates to: GPKAARSEDLEQGSRSKARFRPV*MCVRRM Trigger: CATCCGTCTGACACACATCAACACAGGTCGAAACCT...TGCTTTACTGCGGGATCCCTGCTCCAGGTCCTCTGAGCGTGCTGCCTTGGGACC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002133.9 |
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| CDS CCA 90 bp | AAGGCACTCACTTCCTGGTTTCCAGAGAGAGGTGAAGTGAAATGGTaGCTGTGCAGGTTTCGACCTGTGTTGATGTGTGTCAGACGGATG | + |
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Preference number: 5 (lower is better) Translates to: KALTSWFPERGEVKW*LCRFRPVLMCVRRM Trigger: CATCCGTCTGACACACATCAACACAGGTCGAAACCTGCACAGCCACCATTTCACTTCACCTCTCTCTGGAAACCAGGAAGTGAGTGCCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002133.9 |
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| CDS-3UTR CAA 90 bp | CTCCTCAACTTCTTTTACCAGCATGAAGAAAGCTATCTCCACCTTCACAGACGAGTAACGACAGCCATGTaGGACGCTCCCACAGCGCTC | + |
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Preference number: 5 (lower is better) Translates to: LLNFFYQHEESYLHLHRRVTTAM*DAPTAL Trigger: GAGCGCTGTGGGAGCGTCCAACATGGCTGTCGTTAC...TCGTCTGTGAAGGTGGAGATAGCTTTCTTCATGCTGGTAAAAGAAGTTGAGGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002133.9 |
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| CDS-3UTR CAA 90 bp | CTAAGACAGGCAAGCTCCTCAACTTCTTTTACCAGCATGAAGAAAGCTATCTCCACATTGTGGCGTGTATaGAGTAGCTTCACCACGGAG | + |
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Preference number: 5 (lower is better) Translates to: LRQASSSTSFTSMKKAISTLWRV*SSFTTE Trigger: CTCCGTGGTGAAGCTACTCAATACACGCCACAATGT...GGAGATAGCTTTCTTCATGCTGGTAAAAGAAGTTGAGGAGCTTGCCTGTCTTAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002133.9 |
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| CDS-3UTR CAA 90 bp | CTCCTCAACTTCTTTTACCAGCATGAAGAAAGCTATCTCCACCTTCACAGACGAGAATGCAGTCGGACATaGTGGCGTGTATTGAGTAGC | + |
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Preference number: 5 (lower is better) Translates to: LLNFFYQHEESYLHLHRRECSRT*WRVLSS Trigger: GCTACTCAATACACGCCACAATGTCCGACTGCATTC...TCGTCTGTGAAGGTGGAGATAGCTTTCTTCATGCTGGTAAAAGAAGTTGAGGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002133.9 |
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| CDS-3UTR CAA 90 bp | CTCCTCAACTTCTTTTACCAGCATGAAGAAAGCTATCTCCACCTTCACAGACGAAGTAGTTGTTCTGACTaGGCTGGGCCATACCATGTA | + |
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Preference number: 5 (lower is better) Translates to: LLNFFYQHEESYLHLHRRSSCSD*AGPYHV Trigger: TACATGGTATGGCCCAGCCAAGTCAGAACAACTACT...TCGTCTGTGAAGGTGGAGATAGCTTTCTTCATGCTGGTAAAAGAAGTTGAGGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002133.9 |
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| CDS GCA 72 bp | TGGTTTCCAGAGAGAGGTGAAGTGAAATGGTGGCTGTaGAGGTTTCGACCTGTGTTGATGTGTGTCAGACGG | + |
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Preference number: 6 (lower is better) Translates to: WFPERGEVKWWL*RFRPVLMCVRR Trigger: CCGTCTGACACACATCAACACAGGTCGAAACCTGCACAGCCACCATTTCACTTCACCTCTCTCTGGAAACCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002133.9 |
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| CDS CCA 72 bp | ACTTCCTGGTTTCCAGAGAGAGGTGAAGTGAAATGGTaGCTGTGCAGGTTTCGACCTGTGTTGATGTGTGTC | + |
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Preference number: 6 (lower is better) Translates to: TSWFPERGEVKW*LCRFRPVLMCV Trigger: GACACACATCAACACAGGTCGAAACCTGCACAGCCACCATTTCACTTCACCTCTCTCTGGAAACCAGGAAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002133.9 |
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| CDS CAA 72 bp | GTTCTGACTTGGCTGGGCCATACCATGTACCTCTTTTaGTCCACTTATGGGTCGTCCGTACTGTTCTCCTGT | + |
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Preference number: 6 (lower is better) Translates to: VLTWLGHTMYLF*STYGSSVLFSC Trigger: ACAGGAGAACAGTACGGACGACCCATAAGTGGACAAAAAGAGGTACATGGTATGGCCCAGCCAAGTCAGAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002133.9 |
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