Pregenerated sensors for SDCBP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028249Ensembl transcript IDs: ENSMUST00000029912.11, ENSMUST00000103008.12, ENSMUST00000108374.8, ENSMUST00000140830.8, ENSMUST00000153861.2, ENSMUST00000175769.8
Found 63 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TCAATACAAGTGTGTTGTGTCTTCAATAATAATAGGGTTTTACTATaGATTTATGCGCAGTGTGTTCAGCCCGGTGTTGACAGGCATGTT | + |
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Preference number: 1 (lower is better) Translates to: SIQVCCVFNNNRVLL*IYAQCVQPGVDRHV Trigger: AACATGCCTGTCAACACCGGGCTGAACACACTGCGCATAAATGCATAGTAAAACCCTATTATTATTGAAGACACAACACACTTGTATTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108374.8 |
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| 3UTR CCA 90 bp | CTACCAATGGGTCTAAACATATATTTAGAAGGCAGATTGGCAACTTaGATCTTCAGCAAAACAGCAATATTAGGCTTTCACCTAAGACCC | + |
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Preference number: 1 (lower is better) Translates to: LPMGLNIYLEGRLAT*IFSKTAILGFHLRP Trigger: GGGTCTTAGGTGAAAGCCTAATATTGCTGTTTTGCTGAAGATCCAAGTTGCCAATCTGCCTTCTAAATATATGTTTAGACCCATTGGTAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108374.8 |
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| 3UTR-3UTR TCA 90 bp | TTGAGTAACCCATCAGATGCCACACCCGGGAAGGAAAATGGCACCCCCACCCAATTCTCTGACCCAGGTTaGGGGCAGCACCTACCAATG | + |
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Preference number: 2 (lower is better) Translates to: LSNPSDATPGKENGTPTQFSDPG*GQHLPM Trigger: CATTGGTAGGTGCTGCCCTCAACCTGGGTCAGAGAA...TTGGGTGGGGGTGCCATTTTCCTTCCCGGGTGTGGCATCTGATGGGTTACTCAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000108374.8 |
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| 3UTR-3UTR GCA 90 bp | TCTCATGCAGGTAACCACAGCTGTTGTGAGTTCATGAGAGCCATAGCCACGTCACATTCACTGTTTCTGTaGTCCAGGATACCACAGGCC | + |
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Preference number: 2 (lower is better) Translates to: SHAGNHSCCEFMRAIATSHSLFL*SRIPQA Trigger: GGCCTGTGGTATCCTGGAGCACAGAAACAGTGAATG...TGACGTGGCTATGGCTCTCATGAACTCACAACAGCTGTGGTTACCTGCATGAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108374.8 |
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| 3UTR-3UTR CCA 90 bp | AAGCACATGACTAGCACTGTGCTTTGTTCTAGGAGAAAGCTGACCAGGTCTCAGGCAGCATATTCTCCCTaGCTCCGGGAAAGCTTCATG | + |
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Preference number: 2 (lower is better) Translates to: KHMTSTVLCSRRKLTRSQAAYSP*LRESFM Trigger: CATGAAGCTTTCCCGGAGCCAGGGAGAATATGCTGC...CTGAGACCTGGTCAGCTTTCTCCTAGAACAAAGCACAGTGCTAGTCATGTGCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029912.11 ENSMUST00000103008.12 |
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| 3UTR-3UTR CCA 90 bp | TCTCATGCAGGTAACCACAGCTGTTGTGAGTTCATGAGAGCCATAGCCACGTCAGGACTTCCCCACCTGTaGGCTTTTGACCAGGTTAAT | + |
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Preference number: 2 (lower is better) Translates to: SHAGNHSCCEFMRAIATSGLPHL*AFDQVN Trigger: ATTAACCTGGTCAAAAGCCCACAGGTGGGGAAGTCC...TGACGTGGCTATGGCTCTCATGAACTCACAACAGCTGTGGTTACCTGCATGAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108374.8 |
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| 3UTR-3UTR GCA 90 bp | AAGCACATGACTAGCACTGTGCTTTGTTCTAGGAGAAAGCTGACCAGGTCTCAGAGAGAAAGGTCTCCATaGAGCATATTCTCCCTGGCT | + |
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Preference number: 2 (lower is better) Translates to: KHMTSTVLCSRRKLTRSQRERSP*SIFSLA Trigger: AGCCAGGGAGAATATGCTGCATGGAGACCTTTCTCT...CTGAGACCTGGTCAGCTTTCTCCTAGAACAAAGCACAGTGCTAGTCATGTGCTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029912.11 ENSMUST00000103008.12 |
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| 3UTR-3UTR GCA 90 bp | ATTTCATTTCTTTTGGACCTATATTCAGAACCAAGTCCAGAAAGCAAGGTGGATAGAGAAAGGTCTCCATaGAGCATATTCTCCCTGGCT | + |
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Preference number: 2 (lower is better) Translates to: ISFLLDLYSEPSPESKVDRERSP*SIFSLA Trigger: AGCCAGGGAGAATATGCTGCATGGAGACCTTTCTCT...ATCCACCTTGCTTTCTGGACTTGGTTCTGAATATAGGTCCAAAAGAAATGAAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029912.11 |
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| 3UTR-3UTR CCA 90 bp | ATTTCATTTCTTTTGGACCTATATTCAGAACCAAGTCCAGAAAGCAAGGTGGATGCCGAAGAGGAAAACTaGAAACATTCAGCCGTGATG | + |
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Preference number: 2 (lower is better) Translates to: ISFLLDLYSEPSPESKVDAEEEN*KHSAVM Trigger: CATCACGGCTGAATGTTTCCAGTTTTCCTCTTCGGC...ATCCACCTTGCTTTCTGGACTTGGTTCTGAATATAGGTCCAAAAGAAATGAAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029912.11 |
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| 3UTR CAA 90 bp | CCTACCAATGGGTCTAAACATATATTTAGAAGGCAGATTGGCAACTaGGATCTTCAGCAAAACAGCAATATTAGGCTTTCACCTAAGACC | + |
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Preference number: 2 (lower is better) Translates to: PTNGSKHIFRRQIGN*DLQQNSNIRLSPKT Trigger: GGTCTTAGGTGAAAGCCTAATATTGCTGTTTTGCTGAAGATCCAAGTTGCCAATCTGCCTTCTAAATATATGTTTAGACCCATTGGTAGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108374.8 |
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| 3UTR-3UTR TCA 90 bp | GCACCTACCAATGGGTCTAAACATATATTTAGAAGGCAGATTGGCAACTTGGATAGGTCGTTTCCAACTTaGTTTCCTATATCCTTCAAT | + |
|
Preference number: 2 (lower is better) Translates to: APTNGSKHIFRRQIGNLDRSFPT*FPISFN Trigger: ATTGAAGGATATAGGAAATCAAGTTGGAAACGACCT...ATCCAAGTTGCCAATCTGCCTTCTAAATATATGTTTAGACCCATTGGTAGGTGC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108374.8 |
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| 3UTR CCA 72 bp | CTGATGTCAGTGCGCAGGGTGAAGGTAACCACAGGCTaGCCAAGAGGGATGCCCAGCAAGTGTATTTCCAGG | + |
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Preference number: 3 (lower is better) Translates to: LMSVRRVKVTTG*PRGMPSKCISR Trigger: CCTGGAAATACACTTGCTGGGCATCCCTCTTGGCCAGCCTGTGGTTACCTTCACCCTGCGCACTGACATCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029912.11 |
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| 3UTR TCA 72 bp | GTTAGGACCTTTTTGTATGTCAGGAAACATCTTCTCTaGCCCAGGTTGAGGGCAGCACCTACCAATGGGTCT | + |
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Preference number: 3 (lower is better) Translates to: VRTFLYVRKHLL*PRLRAAPTNGS Trigger: AGACCCATTGGTAGGTGCTGCCCTCAACCTGGGTCAGAGAAGATGTTTCCTGACATACAAAAAGGTCCTAAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000108374.8 |
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| 3UTR GCA 72 bp | TTGATACAAGTAGGCAGCTCTGCTTTACCAGTGAGCTaGTCAGGGCTAGCACAGAACAGCTTAATAGAGAGC | + |
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Preference number: 3 (lower is better) Translates to: LIQVGSSALPVS*SGLAQNSLIES Trigger: GCTCTCTATTAAGCTGTTCTGTGCTAGCCCTGAGCAGCTCACTGGTAAAGCAGAGCTGCCTACTTGTATCAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029912.11 ENSMUST00000103008.12 |
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| 3UTR-3UTR CAA 90 bp | TCTCATGCAGGTAACCACAGCTGTTGTGAGTTCATGAGAGCCATAGCCACGTCACTAGTTGGAAAGCCATaGTTGTACAAAGGTCAGTCT | + |
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Preference number: 3 (lower is better) Translates to: SHAGNHSCCEFMRAIATSLVGKP*LYKGQS Trigger: AGACTGACCTTTGTACAACAATGGCTTTCCAACTAG...TGACGTGGCTATGGCTCTCATGAACTCACAACAGCTGTGGTTACCTGCATGAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108374.8 |
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| 3UTR TCA 72 bp | ACTATGCATTTATGCGCAGTGTGTTCAGCCCGGTGTTaGCAGGCATGTTGTTCAGAAACAGAATCTGAAGAG | + |
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Preference number: 3 (lower is better) Translates to: TMHLCAVCSARC*QACCSETESEE Trigger: CTCTTCAGATTCTGTTTCTGAACAACATGCCTGTCAACACCGGGCTGAACACACTGCGCATAAATGCATAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108374.8 |
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| 3UTR CCA 72 bp | CTTGAGTTAGTTTTAAGTGTCACTAATACATGTGGATaGTCTCGGGATTCACTGGAGACGCAGCAGCCTTTC | + |
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Preference number: 3 (lower is better) Translates to: LELVLSVTNTCG*SRDSLETQQPF Trigger: GAAAGGCTGCTGCGTCTCCAGTGAATCCCGAGACCATCCACATGTATTAGTGACACTTAAAACTAACTCAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029912.11 |
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| 3UTR-3UTR CAA 90 bp | CCCCTCTTATTCATGATGGAATATTTTAGAAGTCTCATGCAGGTAACCACAGCTAGGCAGATTGGCAACTaGGATCTTCAGCAAAACAGC | + |
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Preference number: 3 (lower is better) Translates to: PLLFMMEYFRSLMQVTTARQIGN*DLQQNS Trigger: GCTGTTTTGCTGAAGATCCAAGTTGCCAATCTGCCT...AGCTGTGGTTACCTGCATGAGACTTCTAAAATATTCCATCATGAATAAGAGGGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000108374.8 |
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| 3UTR-3UTR CAA 90 bp | ATTTCATTTCTTTTGGACCTATATTCAGAACCAAGTCCAGAAAGCAAGGTGGATTGCGAAATAGACAAGTaGCCGAAGAGGAAAACTGGA | + |
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Preference number: 3 (lower is better) Translates to: ISFLLDLYSEPSPESKVDCEIDK*PKRKTG Trigger: TCCAGTTTTCCTCTTCGGCAACTTGTCTATTTCGCA...ATCCACCTTGCTTTCTGGACTTGGTTCTGAATATAGGTCCAAAAGAAATGAAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029912.11 |
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| 3UTR TCA 72 bp | TTAATCCTATCAGTGCAAGTGAAGTGGAAGAATCATTaGAAGATCAGTGCGTTTAGATGTGGAGCAAGCATC | + |
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Preference number: 3 (lower is better) Translates to: LILSVQVKWKNH*KISAFRCGASI Trigger: GATGCTTGCTCCACATCTAAACGCACTGATCTTTCAATGATTCTTCCACTTCACTTGCACTGATAGGATTAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108374.8 |
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| 3UTR TCA 72 bp | GCCAGCAAAGAAGAAATTTCTAGGTCGTTTCCAACTTaGTTTCCTATATCCTTCAATACAAGTGTGTTGTGT | + |
|
Preference number: 3 (lower is better) Translates to: ASKEEISRSFPT*FPISFNTSVLC Trigger: ACACAACACACTTGTATTGAAGGATATAGGAAATCAAGTTGGAAACGACCTAGAAATTTCTTCTTTGCTGGC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108374.8 |
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| 3UTR CCA 72 bp | GGTCTAAACATATATTTAGAAGGCAGATTGGCAACTTaGATCTTCAGCAAAACAGCAATATTAGGCTTTCAC | + |
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Preference number: 3 (lower is better) Translates to: GLNIYLEGRLAT*IFSKTAILGFH Trigger: GTGAAAGCCTAATATTGCTGTTTTGCTGAAGATCCAAGTTGCCAATCTGCCTTCTAAATATATGTTTAGACC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108374.8 |
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| 3UTR-3UTR CAA 90 bp | ATAGAAACTGCAATGATTTTCTTACATTCAGTCTCTGACCAGCAACTACAAGATGTGTCATTGCCATTTTaGTTTATAGGACAGAGTCAG | + |
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Preference number: 3 (lower is better) Translates to: IETAMIFLHSVSDQQLQDVSLPF*FIGQSQ Trigger: CTGACTCTGTCCTATAAACAAAAATGGCAATGACAC...ATCTTGTAGTTGCTGGTCAGAGACTGAATGTAAGAAAATCATTGCAGTTTCTAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029912.11 |
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| CDS-3UTR GCA 90 bp | ACCCATCAGATGCCACACCCGGGAAGGAAAATGGCACCCCCACCCAACAAGTTGATCCACCAGAACAAATaGTTGGCTGGCGGGATTGGC | + |
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Preference number: 4 (lower is better) Translates to: THQMPHPGRKMAPPPNKLIHQNK*LAGGIG Trigger: GCCAATCCCGCCAGCCAAGCATTTGTTCTGGTGGAT...CAACTTGTTGGGTGGGGGTGCCATTTTCCTTCCCGGGTGTGGCATCTGATGGGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000108374.8 |
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| CDS-3UTR GCA 90 bp | ACCCATCAGATGCCACACCCGGGAAGGAAAATGGCACCCCCACCCAACAAGTTGTACCAACTGCCCTTGTaGTGGTGCTCCAGAGACCAT | + |
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Preference number: 4 (lower is better) Translates to: THQMPHPGRKMAPPPNKLYQLPL*WCSRDH Trigger: ATGGTCTCTGGAGCACCAGCACAAGGGCAGTTGGTA...CAACTTGTTGGGTGGGGGTGCCATTTTCCTTCCCGGGTGTGGCATCTGATGGGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000108374.8 |
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| CDS-3UTR GCA 90 bp | TGTGTTCAGCCCGGTGTTGACAGGCATGTTGTTCAGAAACAGAATCTGAAGAGACTGCCCTTGTGCTGGTaGTCCAGAGACCATGGGCAT | + |
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Preference number: 4 (lower is better) Translates to: CVQPGVDRHVVQKQNLKRLPLCW*SRDHGH Trigger: ATGCCCATGGTCTCTGGAGCACCAGCACAAGGGCAG...TCTCTTCAGATTCTGTTTCTGAACAACATGCCTGTCAACACCGGGCTGAACACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108374.8 |
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| CDS-3UTR TCA 90 bp | AAGCACATGACTAGCACTGTGCTTTGTTCTAGGAGAAAGCTGACCAGGTCTCAGCTCCAAACGCCTGCTTaGGCACCTTGTGTGCCTTAT | + |
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Preference number: 4 (lower is better) Translates to: KHMTSTVLCSRRKLTRSQLQTPA*APCVPY Trigger: ATAAGGCACACAAGGTGCTCAAGCAGGCGTTTGGAG...CTGAGACCTGGTCAGCTTTCTCCTAGAACAAAGCACAGTGCTAGTCATGTGCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029912.11 ENSMUST00000103008.12 |
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| CDS-3UTR TCA 90 bp | GTGCGAAATAGACAAGTTGCCGAAGAGGAAAACTGGAAACATTCAGCCGTGATGAGATGTGGTGATCAGTaGGGAGGCCGTTTCTGGCAG | + |
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Preference number: 4 (lower is better) Translates to: VRNRQVAEEENWKHSAVMRCGDQ*GGRFWQ Trigger: CTGCCAGAAACGGCCTCCTCACTGATCACCACATCT...CATCACGGCTGAATGTTTCCAGTTTTCCTCTTCGGCAACTTGTCTATTTCGCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029912.11 ENSMUST00000103008.12 |
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| CDS-3UTR GCA 90 bp | AAGCACATGACTAGCACTGTGCTTTGTTCTAGGAGAAAGCTGACCAGGTCTCAGATCCACCAGAACAAATaGTTGGCTGGCGGGATTGGC | + |
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Preference number: 4 (lower is better) Translates to: KHMTSTVLCSRRKLTRSQIHQNK*LAGGIG Trigger: GCCAATCCCGCCAGCCAAGCATTTGTTCTGGTGGAT...CTGAGACCTGGTCAGCTTTCTCCTAGAACAAAGCACAGTGCTAGTCATGTGCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029912.11 ENSMUST00000103008.12 |
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| CDS-3UTR GCA 90 bp | GTGCGAAATAGACAAGTTGCCGAAGAGGAAAACTGGAAACATTCAGCCGTGATGGGTCTTGCTACCAACTaGCCTTGTGCTGGTGCTCCA | + |
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Preference number: 4 (lower is better) Translates to: VRNRQVAEEENWKHSAVMGLATN*PCAGAP Trigger: TGGAGCACCAGCACAAGGGCAGTTGGTAGCAAGACC...CATCACGGCTGAATGTTTCCAGTTTTCCTCTTCGGCAACTTGTCTATTTCGCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029912.11 |
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| CDS-3UTR GCA 90 bp | TTAGATGTGGAGCAAGCATCCGTGCAGCATTCACTGTTTCTGTGCTCCAGGATACACACTGGATGGTCTTaGTACCAACTGCCCTTGTGC | + |
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Preference number: 4 (lower is better) Translates to: LDVEQASVQHSLFLCSRIHTGWS*YQLPLC Trigger: GCACAAGGGCAGTTGGTAGCAAGACCATCCAGTGTG...TATCCTGGAGCACAGAAACAGTGAATGCTGCACGGATGCTTGCTCCACATCTAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108374.8 |
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| 3UTR CAA 72 bp | TCACCTAAGACCCTGGACTTCCCCACCTGTGGGCTTTaGACCAGGTTAATAGGACAAGACATGAATTCCTCC | + |
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Preference number: 4 (lower is better) Translates to: SPKTLDFPTCGL*TRLIGQDMNSS Trigger: GGAGGAATTCATGTCTTGTCCTATTAACCTGGTCAAAAGCCCACAGGTGGGGAAGTCCAGGGTCTTAGGTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108374.8 |
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| CDS-3UTR TCA 90 bp | CTTCATGTGCGAAATAGACAAGTTGCCGAAGAGGAAAACTGGAAACATTCAGCCCTCCAAACGCCTGCTTaGGCACCTTGTGTGCCTTAT | + |
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Preference number: 4 (lower is better) Translates to: LHVRNRQVAEEENWKHSALQTPA*APCVPY Trigger: ATAAGGCACACAAGGTGCTCAAGCAGGCGTTTGGAG...GGCTGAATGTTTCCAGTTTTCCTCTTCGGCAACTTGTCTATTTCGCACATGAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029912.11 ENSMUST00000103008.12 |
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| CDS-3UTR GCA 90 bp | CTTCATGTGCGAAATAGACAAGTTGCCGAAGAGGAAAACTGGAAACATTCAGCCCACACTGGATGGTCTTaGTACCAACTGCCCTTGTGC | + |
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Preference number: 4 (lower is better) Translates to: LHVRNRQVAEEENWKHSAHTGWS*YQLPLC Trigger: GCACAAGGGCAGTTGGTAGCAAGACCATCCAGTGTG...GGCTGAATGTTTCCAGTTTTCCTCTTCGGCAACTTGTCTATTTCGCACATGAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029912.11 |
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| CDS-3UTR GCA 90 bp | AATGCCACAGAATTGAAGCACATGACTAGCACTGTGCTTTGTTCTAGGAGAAAGCAACCCTTGTGCTGGTaGTCCAGAGACCATGGGCAT | + |
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Preference number: 4 (lower is better) Translates to: NATELKHMTSTVLCSRRKQPLCW*SRDHGH Trigger: ATGCCCATGGTCTCTGGAGCACCAGCACAAGGGTTG...CTTTCTCCTAGAACAAAGCACAGTGCTAGTCATGTGCTTCAATTCTGTGGCATT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103008.12 |
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| CDS-3UTR CCA 90 bp | GTGCGAAATAGACAAGTTGCCGAAGAGGAAAACTGGAAACATTCAGCCGTGATGACCAGAACAAATGCTTaGCTGGCGGGATTGGCAGAA | + |
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Preference number: 4 (lower is better) Translates to: VRNRQVAEEENWKHSAVMTRTNA*LAGLAE Trigger: TTCTGCCAATCCCGCCAGCCAAGCATTTGTTCTGGT...CATCACGGCTGAATGTTTCCAGTTTTCCTCTTCGGCAACTTGTCTATTTCGCAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029912.11 ENSMUST00000103008.12 |
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| CDS-3UTR TCA 90 bp | GTTAGCCTCACAGTAAGGACTGATGCAGGCACAGACAGACGGAAATTTCACATTCACAGTCCCAGCTGTTaGCAGTATATCTGCAATCTG | + |
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Preference number: 4 (lower is better) Translates to: VSLTVRTDAGTDRRKFHIHSPSC*QYICNL Trigger: CAGATTGCAGATATACTGTCAACAGCTGGGACTGTG...AATGTGAAATTTCCGTCTGTCTGTGCCTGCATCAGTCCTTACTGTGAGGCTAAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029912.11 |
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| CDS-3UTR TCA 90 bp | GTGCGAAATAGACAAGTTGCCGAAGAGGAAAACTGGAAACATTCAGCCGTGATGCACAGTCCCAGCTGTTaGCAGTATATCTGCAATCTG | + |
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Preference number: 4 (lower is better) Translates to: VRNRQVAEEENWKHSAVMHSPSC*QYICNL Trigger: CAGATTGCAGATATACTGTCAACAGCTGGGACTGTG...CATCACGGCTGAATGTTTCCAGTTTTCCTCTTCGGCAACTTGTCTATTTCGCAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029912.11 ENSMUST00000103008.12 |
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| CDS-3UTR GCA 90 bp | AAGCACATGACTAGCACTGTGCTTTGTTCTAGGAGAAAGCTGACCAGGTCTCAGCAGAGACCATGGGCATaGTCTCACATATTTCAGCTT | + |
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Preference number: 4 (lower is better) Translates to: KHMTSTVLCSRRKLTRSQQRPWA*SHIFQL Trigger: AAGCTGAAATATGTGAGAGCATGCCCATGGTCTCTG...CTGAGACCTGGTCAGCTTTCTCCTAGAACAAAGCACAGTGCTAGTCATGTGCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029912.11 ENSMUST00000103008.12 |
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| CDS-3UTR GCA 90 bp | GACAGGCATGTTGTTCAGAAACAGAATCTGAAGAGAATCTTGTTTGATGACTGGGGTCTTGCTACCAACTaGCCTTGTGCTGGTGCTCCA | + |
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Preference number: 4 (lower is better) Translates to: DRHVVQKQNLKRILFDDWGLATN*PCAGAP Trigger: TGGAGCACCAGCACAAGGGCAGTTGGTAGCAAGACC...CCAGTCATCAAACAAGATTCTCTTCAGATTCTGTTTCTGAACAACATGCCTGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108374.8 |
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| CDS-3UTR CCA 90 bp | GTTAGCCTCACAGTAAGGACTGATGCAGGCACAGACAGACGGAAATTTCACATTATACAGATTTCCATCTaGAGGGAGAGCAGCAGAAGC | + |
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Preference number: 4 (lower is better) Translates to: VSLTVRTDAGTDRRKFHIIQISI*RESSRS Trigger: GCTTCTGCTGCTCTCCCTCCAGATGGAAATCTGTAT...AATGTGAAATTTCCGTCTGTCTGTGCCTGCATCAGTCCTTACTGTGAGGCTAAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029912.11 |
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| CDS-3UTR TCA 90 bp | GCACCTACCAATGGGTCTAAACATATATTTAGAAGGCAGATTGGCAACTTGGATCTCCAAACGCCTGCTTaGGCACCTTGTGTGCCTTAT | + |
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Preference number: 4 (lower is better) Translates to: APTNGSKHIFRRQIGNLDLQTPA*APCVPY Trigger: ATAAGGCACACAAGGTGCTCAAGCAGGCGTTTGGAG...ATCCAAGTTGCCAATCTGCCTTCTAAATATATGTTTAGACCCATTGGTAGGTGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108374.8 |
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| CDS-3UTR GCA 90 bp | AAATATATAGCAATTTGTTTCTCAGAAAGCAATACGGCAACTCTTAGGCGTTTCCTGCCCTTGTGCTGGTaGTCCAGAGACCATGGGCAT | + |
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Preference number: 4 (lower is better) Translates to: KYIAICFSESNTATLRRFLPLCW*SRDHGH Trigger: ATGCCCATGGTCTCTGGAGCACCAGCACAAGGGCAG...GAAACGCCTAAGAGTTGCCGTATTGCTTTCTGAGAAACAAATTGCTATATATTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029912.11 |
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| CDS-3UTR GCA 90 bp | GTGCGAAATAGACAAGTTGCCGAAGAGGAAAACTGGAAACATTCAGCCGTGATGGTTACCTGTCACAGGTaGTACCATATAGTTCACACT | + |
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Preference number: 4 (lower is better) Translates to: VRNRQVAEEENWKHSAVMVTCHR*YHIVHT Trigger: AGTGTGAACTATATGGTAGCACCTGTGACAGGTAAC...CATCACGGCTGAATGTTTCCAGTTTTCCTCTTCGGCAACTTGTCTATTTCGCAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029912.11 ENSMUST00000103008.12 |
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| CDS-3UTR CCA 90 bp | AATGCCACAGAATTGAAGCACATGACTAGCACTGTGCTTTGTTCTAGGAGAAAGATACAGATTTCCATCTaGAGGGAGAGCAGCAGAAGC | + |
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Preference number: 4 (lower is better) Translates to: NATELKHMTSTVLCSRRKIQISI*RESSRS Trigger: GCTTCTGCTGCTCTCCCTCCAGATGGAAATCTGTAT...CTTTCTCCTAGAACAAAGCACAGTGCTAGTCATGTGCTTCAATTCTGTGGCATT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029912.11 ENSMUST00000103008.12 |
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| CDS-3UTR TCA 90 bp | ATAGAAACTGCAATGATTTTCTTACATTCAGTCTCTGACCAGCAACTACAAGATAGATGTGGTGATCAGTaGGGAGGCCGTTTCTGGCAG | + |
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Preference number: 4 (lower is better) Translates to: IETAMIFLHSVSDQQLQDRCGDQ*GGRFWQ Trigger: CTGCCAGAAACGGCCTCCTCACTGATCACCACATCT...ATCTTGTAGTTGCTGGTCAGAGACTGAATGTAAGAAAATCATTGCAGTTTCTAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029912.11 |
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| CDS-3UTR GCA 90 bp | AATGCCACAGAATTGAAGCACATGACTAGCACTGTGCTTTGTTCTAGGAGAAAGCAGAGACCATGGGCATaGTCTCACATATTTCAGCTT | + |
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Preference number: 4 (lower is better) Translates to: NATELKHMTSTVLCSRRKQRPWA*SHIFQL Trigger: AAGCTGAAATATGTGAGAGCATGCCCATGGTCTCTG...CTTTCTCCTAGAACAAAGCACAGTGCTAGTCATGTGCTTCAATTCTGTGGCATT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029912.11 ENSMUST00000103008.12 |
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| 3UTR CAA 72 bp | TATGCTGACGTACTAAAGTCCAAGAATGCCACAGAATaGAAGCACATGACTAGCACTGTGCTTTGTTCTAGG | + |
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Preference number: 4 (lower is better) Translates to: YADVLKSKNATE*KHMTSTVLCSR Trigger: CCTAGAACAAAGCACAGTGCTAGTCATGTGCTTCAATTCTGTGGCATTCTTGGACTTTAGTACGTCAGCATA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029912.11 ENSMUST00000103008.12 |
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| CDS-3UTR GCA 90 bp | ATAGAAACTGCAATGATTTTCTTACATTCAGTCTCTGACCAGCAACTACAAGATATCCACCAGAACAAATaGTTGGCTGGCGGGATTGGC | + |
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Preference number: 4 (lower is better) Translates to: IETAMIFLHSVSDQQLQDIHQNK*LAGGIG Trigger: GCCAATCCCGCCAGCCAAGCATTTGTTCTGGTGGAT...ATCTTGTAGTTGCTGGTCAGAGACTGAATGTAAGAAAATCATTGCAGTTTCTAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029912.11 |
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| CDS-3UTR GCA 90 bp | ATAGAAACTGCAATGATTTTCTTACATTCAGTCTCTGACCAGCAACTACAAGATTACCAACTGCCCTTGTaGTGGTGCTCCAGAGACCAT | + |
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Preference number: 4 (lower is better) Translates to: IETAMIFLHSVSDQQLQDYQLPL*WCSRDH Trigger: ATGGTCTCTGGAGCACCAGCACAAGGGCAGTTGGTA...ATCTTGTAGTTGCTGGTCAGAGACTGAATGTAAGAAAATCATTGCAGTTTCTAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029912.11 |
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| CDS-3UTR GCA 90 bp | AAATATATAGCAATTTGTTTCTCAGAAAGCAATACGGCAACTCTTAGGCGTTTCCACACTGGATGGTCTTaGTACCAACCCTTGTGCTGG | + |
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Preference number: 4 (lower is better) Translates to: KYIAICFSESNTATLRRFHTGWS*YQPLCW Trigger: CCAGCACAAGGGTTGGTAGCAAGACCATCCAGTGTG...GAAACGCCTAAGAGTTGCCGTATTGCTTTCTGAGAAACAAATTGCTATATATTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103008.12 |
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| CDS-3UTR CCA 90 bp | ATTTCATTTCTTTTGGACCTATATTCAGAACCAAGTCCAGAAAGCAAGGTGGATACCAGAACAAATGCTTaGCTGGCGGGATTGGCAGAA | + |
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Preference number: 4 (lower is better) Translates to: ISFLLDLYSEPSPESKVDTRTNA*LAGLAE Trigger: TTCTGCCAATCCCGCCAGCCAAGCATTTGTTCTGGT...ATCCACCTTGCTTTCTGGACTTGGTTCTGAATATAGGTCCAAAAGAAATGAAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029912.11 |
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| CDS-3UTR CCA 90 bp | GAACTACTAGTTGATCAGTTAATCCTATCAGTGCAAGTGAAGTGGAAGAATCATACCAGAACAAATGCTTaGCTGGCGGGATTGGCAGAA | + |
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Preference number: 4 (lower is better) Translates to: ELLVDQLILSVQVKWKNHTRTNA*LAGLAE Trigger: TTCTGCCAATCCCGCCAGCCAAGCATTTGTTCTGGT...ATGATTCTTCCACTTCACTTGCACTGATAGGATTAACTGATCAACTAGTAGTTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108374.8 |
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| CDS-3UTR GCA 90 bp | GGTCGTTTCCAACTTGATTTCCTATATCCTTCAATACAAGTGTGTTGTGTCTTCGTTACCTGTCACAGGTaGTACCATATAGTTCACACT | + |
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Preference number: 4 (lower is better) Translates to: GRFQLDFLYPSIQVCCVFVTCHR*YHIVHT Trigger: AGTGTGAACTATATGGTAGCACCTGTGACAGGTAAC...GAAGACACAACACACTTGTATTGAAGGATATAGGAAATCAAGTTGGAAACGACC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108374.8 |
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| CDS-3UTR GCA 90 bp | AAATATATAGCAATTTGTTTCTCAGAAAGCAATACGGCAACTCTTAGGCGTTTCGTTACCTGTCACAGGTaGTACCATATAGTTCACACT | + |
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Preference number: 4 (lower is better) Translates to: KYIAICFSESNTATLRRFVTCHR*YHIVHT Trigger: AGTGTGAACTATATGGTAGCACCTGTGACAGGTAAC...GAAACGCCTAAGAGTTGCCGTATTGCTTTCTGAGAAACAAATTGCTATATATTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029912.11 ENSMUST00000103008.12 |
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| 3UTR CAA 72 bp | AAGGTAGTTAAGATTAGTGACAATCATTACAGTCTCTaGCAACCTACACACAACTGTGTAATGCTTTTGTGG | + |
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Preference number: 4 (lower is better) Translates to: KVVKISDNHYSL*QPTHNCVMLLW Trigger: CCACAAAAGCATTACACAGTTGTGTGTAGGTTGCAAGAGACTGTAATGATTGTCACTAATCTTAACTACCTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029912.11 ENSMUST00000103008.12 |
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| CDS-3UTR CAA 90 bp | TCTCATGCAGGTAACCACAGCTGTTGTGAGTTCATGAGAGCCATAGCCACGTCACACCAGAACAAATGCTaGGCTGGCGGGATTGGCAGA | + |
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Preference number: 5 (lower is better) Translates to: SHAGNHSCCEFMRAIATSHQNKC*AGGIGR Trigger: TCTGCCAATCCCGCCAGCCAAGCATTTGTTCTGGTG...TGACGTGGCTATGGCTCTCATGAACTCACAACAGCTGTGGTTACCTGCATGAGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108374.8 |
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| CDS-3UTR CAA 90 bp | CTTCATGTGCGAAATAGACAAGTTGCCGAAGAGGAAAACTGGAAACATTCAGCCCACCAGAACAAATGCTaGGCTGGCGGGATTGGCAGA | + |
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Preference number: 5 (lower is better) Translates to: LHVRNRQVAEEENWKHSAHQNKC*AGGIGR Trigger: TCTGCCAATCCCGCCAGCCAAGCATTTGTTCTGGTG...GGCTGAATGTTTCCAGTTTTCCTCTTCGGCAACTTGTCTATTTCGCACATGAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029912.11 ENSMUST00000103008.12 |
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| CDS-3UTR CAA 90 bp | AATGCCACAGAATTGAAGCACATGACTAGCACTGTGCTTTGTTCTAGGAGAAAGCACCAGAACAAATGCTaGGCTGGCGGGATTGGCAGA | + |
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Preference number: 5 (lower is better) Translates to: NATELKHMTSTVLCSRRKHQNKC*AGGIGR Trigger: TCTGCCAATCCCGCCAGCCAAGCATTTGTTCTGGTG...CTTTCTCCTAGAACAAAGCACAGTGCTAGTCATGTGCTTCAATTCTGTGGCATT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029912.11 ENSMUST00000103008.12 |
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| CDS-3UTR CAA 90 bp | AATGCCACAGAATTGAAGCACATGACTAGCACTGTGCTTTGTTCTAGGAGAAAGCCACAGTCCCAGCTGTaGACAGTATATCTGCAATCT | + |
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Preference number: 5 (lower is better) Translates to: NATELKHMTSTVLCSRRKPQSQL*TVYLQS Trigger: AGATTGCAGATATACTGTCAACAGCTGGGACTGTGG...CTTTCTCCTAGAACAAAGCACAGTGCTAGTCATGTGCTTCAATTCTGTGGCATT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029912.11 ENSMUST00000103008.12 |
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| CDS-3UTR CAA 90 bp | ATTTCATTTCTTTTGGACCTATATTCAGAACCAAGTCCAGAAAGCAAGGTGGATCCACAGTCCCAGCTGTaGACAGTATATCTGCAATCT | + |
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Preference number: 5 (lower is better) Translates to: ISFLLDLYSEPSPESKVDPQSQL*TVYLQS Trigger: AGATTGCAGATATACTGTCAACAGCTGGGACTGTGG...ATCCACCTTGCTTTCTGGACTTGGTTCTGAATATAGGTCCAAAAGAAATGAAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029912.11 |
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| CDS GCA 72 bp | TGGAGGGAGAGCAGCAGAAGCATCCACCAGAACAAATaGTTGGCTGGCGGGATTGGCAGAATAAGCAGTTTG | + |
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Preference number: 6 (lower is better) Translates to: WRESSRSIHQNK*LAGGIGRISSL Trigger: CAAACTGCTTATTCTGCCAATCCCGCCAGCCAAGCATTTGTTCTGGTGGATGCTTCTGCTGCTCTCCCTCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000029912.11 ENSMUST00000103008.12 ENSMUST00000108374.8 ENSMUST00000140830.8 ENSMUST00000153861.2 ENSMUST00000175769.8 |
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| CDS CCA 72 bp | TTGCTACCAACCCTTGTGCTGGTGCTCCAGAGACCATaGGCATGCTCTCACATATTTCAGCTTCATTTAAAG | + |
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Preference number: 6 (lower is better) Translates to: LLPTLVLVLQRP*ACSHIFQLHLK Trigger: CTTTAAATGAAGCTGAAATATGTGAGAGCATGCCCATGGTCTCTGGAGCACCAGCACAAGGGTTGGTAGCAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103008.12 ENSMUST00000153861.2 |
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