Pregenerated sensors for SDC4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000017009Ensembl transcript IDs: ENSMUST00000017153.4
Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CCCCCAGGTACGCCACAGAGACTCTGCAGCGTGAGCAAGTTCTCATaGCAGACTCATCTCAAGGCGCAGAGGGTTCTGGCTCCTTGCCCC | + |
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Preference number: 1 (lower is better) Translates to: PPGTPQRLCSVSKFS*QTHLKAQRVLAPCP Trigger: GGGGCAAGGAGCCAGAACCCTCTGCGCCTTGAGATGAGTCTGCCATGAGAACTTGCTCACGCTGCAGAGTCTCTGTGGCGTACCTGGGGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017153.4 |
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| 3UTR GCA 90 bp | AGGAGTCCCTGGGGCCTCATCACCTTTCTCCTGGTCCCCTTCCCTTaGCCAGGGAGACAAGCAAAGCTGAGCAATGACCTGCTAAACCAG | + |
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Preference number: 1 (lower is better) Translates to: RSPWGLITFLLVPFP*PGRQAKLSNDLLNQ Trigger: CTGGTTTAGCAGGTCATTGCTCAGCTTTGCTTGTCTCCCTGGGCAAGGGAAGGGGACCAGGAGAAAGGTGATGAGGCCCCAGGGACTCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017153.4 |
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| 3UTR GCA 90 bp | AGAAAGGTGACTAGAGATGGAGATACTGACAAGTCAGCATTAAGGTaGCTGCTGCTCTCTGCCAACGCCCGCCACCCACAACCCTCCACT | + |
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Preference number: 1 (lower is better) Translates to: RKVTRDGDTDKSALR*LLLSANARHPQPST Trigger: AGTGGAGGGTTGTGGGTGGCGGGCGTTGGCAGAGAGCAGCAGGCACCTTAATGCTGACTTGTCAGTATCTCCATCTCTAGTCACCTTTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017153.4 |
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| 3UTR-3UTR GCA 90 bp | GAGCAAGTTCTCATGGCAGACTCATCTCAAGGCGCAGAGGGTTCTGGCTCCTTGGTGCCTGCTGCTCTCTaGCAACGCCCGCCACCCACA | + |
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Preference number: 2 (lower is better) Translates to: EQVLMADSSQGAEGSGSLVPAAL*QRPPPT Trigger: TGTGGGTGGCGGGCGTTGGCAGAGAGCAGCAGGCAC...CAAGGAGCCAGAACCCTCTGCGCCTTGAGATGAGTCTGCCATGAGAACTTGCTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017153.4 |
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| 3UTR-3UTR CCA 90 bp | CAGGAGCCCCTCCTCCCCGGCAGAAGGCACAGTGAGGGTTCGAGTCAGGGACCCCAAGGCAGTCATAGATaGGACATGTTTACTACAGGA | + |
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Preference number: 2 (lower is better) Translates to: QEPLLPGRRHSEGSSQGPQGSHR*DMFTTG Trigger: TCCTGTAGTAAACATGTCCCATCTATGACTGCCTTG...GGGTCCCTGACTCGAACCCTCACTGTGCCTTCTGCCGGGGAGGAGGGGCTCCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000017153.4 |
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| 3UTR-3UTR GCA 90 bp | GAGCAAGTTCTCATGGCAGACTCATCTCAAGGCGCAGAGGGTTCTGGCTCCTTGAAGTCAGCATTAAGGTaGCTGCTGCTCTCTGCCAAC | + |
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Preference number: 2 (lower is better) Translates to: EQVLMADSSQGAEGSGSLKSALR*LLLSAN Trigger: GTTGGCAGAGAGCAGCAGGCACCTTAATGCTGACTT...CAAGGAGCCAGAACCCTCTGCGCCTTGAGATGAGTCTGCCATGAGAACTTGCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017153.4 |
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| 3UTR-3UTR TCA 90 bp | GAGCAAGTTCTCATGGCAGACTCATCTCAAGGCGCAGAGGGTTCTGGCTCCTTGCTGACACCAGAAAGGTaGCTAGAGATGGAGATACTG | + |
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Preference number: 2 (lower is better) Translates to: EQVLMADSSQGAEGSGSLLTPER*LEMEIL Trigger: CAGTATCTCCATCTCTAGTCACCTTTCTGGTGTCAG...CAAGGAGCCAGAACCCTCTGCGCCTTGAGATGAGTCTGCCATGAGAACTTGCTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017153.4 |
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| 3UTR-3UTR CCA 90 bp | GAGCAAGTTCTCATGGCAGACTCATCTCAAGGCGCAGAGGGTTCTGGCTCCTTGCTACAGGATCTAAACTaGTCCTATATTCTATTCTGG | + |
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Preference number: 2 (lower is better) Translates to: EQVLMADSSQGAEGSGSLLQDLN*SYILFW Trigger: CCAGAATAGAATATAGGACCAGTTTAGATCCTGTAG...CAAGGAGCCAGAACCCTCTGCGCCTTGAGATGAGTCTGCCATGAGAACTTGCTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017153.4 |
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| 3UTR TCA 72 bp | GAATGCCCCCAGGTACGCCACAGAGACTCTGCAGCGTaGGCAAGTTCTCATGGCAGACTCATCTCAAGGCGC | + |
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Preference number: 3 (lower is better) Translates to: ECPQVRHRDSAA*ASSHGRLISRR Trigger: GCGCCTTGAGATGAGTCTGCCATGAGAACTTGCTCACGCTGCAGAGTCTCTGTGGCGTACCTGGGGGCATTC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017153.4 |
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| 3UTR CCA 72 bp | TCTGTAAGAGGGAGAGTACCAGATGACAGGAGTCCCTaGGGCCTCATCACCTTTCTCCTGGTCCCCTTCCCT | + |
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Preference number: 3 (lower is better) Translates to: SVRGRVPDDRSP*GLITFLLVPFP Trigger: AGGGAAGGGGACCAGGAGAAAGGTGATGAGGCCCCAGGGACTCCTGTCATCTGGTACTCTCCCTCTTACAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017153.4 |
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| 3UTR GCA 72 bp | GGACTTAGAATGCCCCCAGGTACGCCACAGAGACTCTaGAGCGTGAGCAAGTTCTCATGGCAGACTCATCTC | + |
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Preference number: 3 (lower is better) Translates to: GLRMPPGTPQRL*SVSKFSWQTHL Trigger: GAGATGAGTCTGCCATGAGAACTTGCTCACGCTGCAGAGTCTCTGTGGCGTACCTGGGGGCATTCTAAGTCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017153.4 |
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| 3UTR CCA 72 bp | CTCGGTGCCCGGGGGATGGTGACTGAGCATTTTGTGTaGCTAGTGCAACCGAGGAATGACTTCCAATCACGT | + |
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Preference number: 3 (lower is better) Translates to: LGARGMVTEHFV*LVQPRNDFQSR Trigger: ACGTGATTGGAAGTCATTCCTCGGTTGCACTAGCCACACAAAATGCTCAGTCACCATCCCCCGGGCACCGAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017153.4 |
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| 3UTR TCA 72 bp | ACTAGCTCTCTCCTCTGTAAGAGGGAGAGTACCAGATaGCAGGAGTCCCTGGGGCCTCATCACCTTTCTCCT | + |
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Preference number: 3 (lower is better) Translates to: TSSLLCKRESTR*QESLGPHHLSP Trigger: AGGAGAAAGGTGATGAGGCCCCAGGGACTCCTGTCATCTGGTACTCTCCCTCTTACAGAGGAGAGAGCTAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017153.4 |
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| 3UTR GCA 72 bp | ACTAGAGATGGAGATACTGACAAGTCAGCATTAAGGTaGCTGCTGCTCTCTGCCAACGCCCGCCACCCACAA | + |
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Preference number: 3 (lower is better) Translates to: TRDGDTDKSALR*LLLSANARHPQ Trigger: TTGTGGGTGGCGGGCGTTGGCAGAGAGCAGCAGGCACCTTAATGCTGACTTGTCAGTATCTCCATCTCTAGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017153.4 |
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| 3UTR-3UTR CAA 90 bp | CTTCGTAAGATAAAGCAACTTCAGGAAGGGCCAAGGTCAAAAACAAGGACACGGGAGGGTTCTGGCTCCTaGCCCCAGCTCCTGACAGAT | + |
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Preference number: 3 (lower is better) Translates to: LRKIKQLQEGPRSKTRTREGSGS*PQLLTD Trigger: ATCTGTCAGGAGCTGGGGCAAGGAGCCAGAACCCTC...CCGTGTCCTTGTTTTTGACCTTGGCCCTTCCTGAAGTTGCTTTATCTTACGAAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017153.4 |
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| 3UTR TCA 72 bp | CAACCGAGGAATGACTTCCAATCACGTAGTCTGAAGTaGACCGAGTTATACAGCCACACGAGGCCACTGTAT | + |
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Preference number: 3 (lower is better) Translates to: QPRNDFQSRSLK*TELYSHTRPLY Trigger: ATACAGTGGCCTCGTGTGGCTGTATAACTCGGTTCACTTCAGACTACGTGATTGGAAGTCATTCCTCGGTTG 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017153.4 |
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| 3UTR CCA 72 bp | GTAACCCCTTGCCTCTATAATCAAGGCAGTCATAGATaGGACATGTTTACTACAGGATCTAAACTGGTCCTA | + |
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Preference number: 3 (lower is better) Translates to: VTPCLYNQGSHR*DMFTTGSKLVL Trigger: TAGGACCAGTTTAGATCCTGTAGTAAACATGTCCCATCTATGACTGCCTTGATTATAGAGGCAAGGGGTTAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017153.4 |
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| 3UTR CCA 72 bp | GTCATAGATGGGACATGTTTACTACAGGATCTAAACTaGTCCTATATTCTATTCTGGAAATTTGGAACAATG | + |
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Preference number: 3 (lower is better) Translates to: VIDGTCLLQDLN*SYILFWKFGTM Trigger: CATTGTTCCAAATTTCCAGAATAGAATATAGGACCAGTTTAGATCCTGTAGTAAACATGTCCCATCTATGAC 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017153.4 |
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| CDS-3UTR CCA 90 bp | CAGGAGCCCCTCCTCCCCGGCAGAAGGCACAGTGAGGGTTCGAGTCAGGGACCCGCATTCTCAGGGATGTaGTTATCCAGTGGCACCAAG | + |
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Preference number: 4 (lower is better) Translates to: QEPLLPGRRHSEGSSQGPAFSGM*LSSGTK Trigger: CTTGGTGCCACTGGATAACCACATCCCTGAGAATGC...GGGTCCCTGACTCGAACCCTCACTGTGCCTTCTGCCGGGGAGGAGGGGCTCCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017153.4 |
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| CDS-3UTR GCA 90 bp | CACCGGGAACAGGGCAAGGTAAGAGGGCAGCAGCCTCTTCAGCCACACGAAAACACGGATGCCAGGCTGTaGATTCTCAGGGATGTGGTT | + |
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Preference number: 4 (lower is better) Translates to: HREQGKVRGQQPLQPHENTDARL*ILRDVV Trigger: AACCACATCCCTGAGAATGCACAGCCTGGCATCCGT...GTTTTCGTGTGGCTGAAGAGGCTGCTGCCCTCTTACCTTGCCCTGTTCCCGGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017153.4 |
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| CDS-3UTR GCA 90 bp | CACCGGGAACAGGGCAAGGTAAGAGGGCAGCAGCCTCTTCAGCCACACGAAAACCGTCCTTCTTCTTCATaGGGTACACCAGCAGCAGGA | + |
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Preference number: 4 (lower is better) Translates to: HREQGKVRGQQPLQPHENRPSSS*GTPAAG Trigger: TCCTGCTGCTGGTGTACCGCATGAAGAAGAAGGACG...GTTTTCGTGTGGCTGAAGAGGCTGCTGCCCTCTTACCTTGCCCTGTTCCCGGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017153.4 |
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| CDS-3UTR CCA 90 bp | GAGCAAGTTCTCATGGCAGACTCATCTCAAGGCGCAGAGGGTTCTGGCTCCTTGTCTCTTCCAGTTCCTTaGGCTCTGAGGGGACACGGA | + |
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Preference number: 4 (lower is better) Translates to: EQVLMADSSQGAEGSGSLSLPVP*ALRGHG Trigger: TCCGTGTCCCCTCAGAGCCCAAGGAACTGGAAGAGA...CAAGGAGCCAGAACCCTCTGCGCCTTGAGATGAGTCTGCCATGAGAACTTGCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017153.4 |
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| CDS-3UTR GCA 90 bp | CCCTTCCCTTGCCCAGGGAGACAAGCAAAGCTGAGCAATGACCTGCTAAACCAGTGCTGCCCTGGGCAGTaGTGGACATGGATACTTTGT | + |
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Preference number: 4 (lower is better) Translates to: PFPCPGRQAKLSNDLLNQCCPGQ*WTWILC Trigger: ACAAAGTATCCATGTCCAGCACTGCCCAGGGCAGCA...CTGGTTTAGCAGGTCATTGCTCAGCTTTGCTTGTCTCCCTGGGCAAGGGAAGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017153.4 |
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| CDS-3UTR CCA 90 bp | GAGCAAGTTCTCATGGCAGACTCATCTCAAGGCGCAGAGGGTTCTGGCTCCTTGGATGTGGTTATCCAGTaGCACCAAGGGCTCAATCAC | + |
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Preference number: 4 (lower is better) Translates to: EQVLMADSSQGAEGSGSLDVVIQ*HQGLNH Trigger: GTGATTGAGCCCTTGGTGCCACTGGATAACCACATC...CAAGGAGCCAGAACCCTCTGCGCCTTGAGATGAGTCTGCCATGAGAACTTGCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017153.4 |
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| CDS-3UTR GCA 90 bp | CTTCGTAAGATAAAGCAACTTCAGGAAGGGCCAAGGTCAAAAACAAGGACACGGCTGAGGGGACACGGATaGCAGGCTGTGCATTCTCAG | + |
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Preference number: 4 (lower is better) Translates to: LRKIKQLQEGPRSKTRTRLRGHG*QAVHSQ Trigger: CTGAGAATGCACAGCCTGGCATCCGTGTCCCCTCAG...CCGTGTCCTTGTTTTTGACCTTGGCCCTTCCTGAAGTTGCTTTATCTTACGAAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017153.4 |
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| CDS-3UTR CCA 90 bp | TCTGACACCAGAAAGGTGACTAGAGATGGAGATACTGACAAGTCAGCATTAAGGCTTCAGGGAAGGGCCTaGGCTCCTCCGTGTCATCCA | + |
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Preference number: 4 (lower is better) Translates to: SDTRKVTRDGDTDKSALRLQGRA*APPCHP Trigger: TGGATGACACGGAGGAGCCCAGGCCCTTCCCTGAAG...CCTTAATGCTGACTTGTCAGTATCTCCATCTCTAGTCACCTTTCTGGTGTCAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017153.4 |
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| CDS-3UTR CCA 90 bp | TCACGCAACCATCCAGCCAACATGGGACCTGTAATATCATTCTATAGCCTAAAACCTTCCAGGAGGTCCTaGGGGTCGATGACCTCTGTC | + |
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Preference number: 4 (lower is better) Translates to: SRNHPANMGPVISFYSLKPSRRS*GSMTSV Trigger: GACAGAGGTCATCGACCCCCAGGACCTCCTGGAAGG...TTTTAGGCTATAGAATGATATTACAGGTCCCATGTTGGCTGGATGGTTGCGTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017153.4 |
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| CDS-3UTR GCA 90 bp | TCTGACACCAGAAAGGTGACTAGAGATGGAGATACTGACAAGTCAGCATTAAGGCTCCAGAGAAGTATCTaGCTTCCAGGAGGTCCTGGG | + |
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Preference number: 4 (lower is better) Translates to: SDTRKVTRDGDTDKSALRLQRSI*LPGGPG Trigger: CCCAGGACCTCCTGGAAGGCAGATACTTCTCTGGAG...CCTTAATGCTGACTTGTCAGTATCTCCATCTCTAGTCACCTTTCTGGTGTCAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017153.4 |
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| CDS-3UTR CCA 90 bp | CTTCGTAAGATAAAGCAACTTCAGGAAGGGCCAAGGTCAAAAACAAGGACACGGTGCCCTGGGCAGTGCTaGACATGGATACTTTGTTGG | + |
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Preference number: 4 (lower is better) Translates to: LRKIKQLQEGPRSKTRTRCPGQC*TWILCW Trigger: CCAACAAAGTATCCATGTCCAGCACTGCCCAGGGCA...CCGTGTCCTTGTTTTTGACCTTGGCCCTTCCTGAAGTTGCTTTATCTTACGAAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017153.4 |
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| CDS-3UTR TCA 90 bp | AACACAAACAAAAATATCCCGCTATCCCCCTACATTATATTCTGGAAACTGCTAGGTCCTGGGGGTCGATaGCCTCTGTCTCTCGAATCG | + |
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Preference number: 4 (lower is better) Translates to: NTNKNIPLSPYIIFWKLLGPGGR*PLSLES Trigger: CGATTCGAGAGACAGAGGTCATCGACCCCCAGGACC...TAGCAGTTTCCAGAATATAATGTAGGGGGATAGCGGGATATTTTTGTTTGTGTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000017153.4 |
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| CDS-3UTR GCA 90 bp | TCACGCAACCATCCAGCCAACATGGGACCTGTAATATCATTCTATAGCCTAAAATGTAGATGGGTTTCTTaGCCAAGTCGTAACTGCCTT | + |
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Preference number: 4 (lower is better) Translates to: SRNHPANMGPVISFYSLKCRWVS*PSRNCL Trigger: AAGGCAGTTACGACTTGGGCAAGAAACCCATCTACA...TTTTAGGCTATAGAATGATATTACAGGTCCCATGTTGGCTGGATGGTTGCGTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017153.4 |
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| CDS-3UTR CCA 90 bp | ATAATCAAGGCAGTCATAGATGGGACATGTTTACTACAGGATCTAAACTGGTCCACATGGATACTTTGTTaGACATGTCATCCCCCACGT | + |
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Preference number: 4 (lower is better) Translates to: IIKAVIDGTCLLQDLNWSTWILC*TCHPPR Trigger: ACGTGGGGGATGACATGTCCAACAAAGTATCCATGT...GGACCAGTTTAGATCCTGTAGTAAACATGTCCCATCTATGACTGCCTTGATTAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017153.4 |
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| CDS-3UTR CCA 90 bp | AACACAAACAAAAATATCCCGCTATCCCCCTACATTATATTCTGGAAACTGCTAGGGCAGTGCTGGACATaGATACTTTGTTGGACATGT | + |
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Preference number: 4 (lower is better) Translates to: NTNKNIPLSPYIIFWKLLGQCWT*ILCWTC Trigger: ACATGTCCAACAAAGTATCCATGTCCAGCACTGCCC...TAGCAGTTTCCAGAATATAATGTAGGGGGATAGCGGGATATTTTTGTTTGTGTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000017153.4 |
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| CDS CCA 90 bp | GGCTCTGAGGGGACACGGATGCCAGGCTGTGCATTCTCAGGGATGTaGTTATCCAGTGGCACCAAGGGCTCAATCACTTCAGGGAAGGGC | + |
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Preference number: 5 (lower is better) Translates to: GSEGTRMPGCAFSGM*LSSGTKGSITSGKG Trigger: GCCCTTCCCTGAAGTGATTGAGCCCTTGGTGCCACTGGATAACCACATCCCTGAGAATGCACAGCCTGGCATCCGTGTCCCCTCAGAGCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017153.4 |
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| CDS-3UTR CAA 90 bp | CACCGGGAACAGGGCAAGGTAAGAGGGCAGCAGCCTCTTCAGCCACACGAAAACGACATGGATACTTTGTaGGACATGTCATCCCCCACG | + |
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Preference number: 5 (lower is better) Translates to: HREQGKVRGQQPLQPHENDMDTL*DMSSPT Trigger: CGTGGGGGATGACATGTCCAACAAAGTATCCATGTC...GTTTTCGTGTGGCTGAAGAGGCTGCTGCCCTCTTACCTTGCCCTGTTCCCGGTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017153.4 |
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| CDS-3UTR CAA 90 bp | CTTCGTAAGATAAAGCAACTTCAGGAAGGGCCAAGGTCAAAAACAAGGACACGGTTCTCTTCCAGTTCCTaGGGCTCTGAGGGGACACGG | + |
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Preference number: 5 (lower is better) Translates to: LRKIKQLQEGPRSKTRTRFSSSS*GSEGTR Trigger: CCGTGTCCCCTCAGAGCCCAAGGAACTGGAAGAGAA...CCGTGTCCTTGTTTTTGACCTTGGCCCTTCCTGAAGTTGCTTTATCTTACGAAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017153.4 |
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| CDS-3UTR CAA 90 bp | ATAATCAAGGCAGTCATAGATGGGACATGTTTACTACAGGATCTAAACTGGTCCCTGGACATGGATACTTaGTTGGACATGTCATCCCCC | + |
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Preference number: 5 (lower is better) Translates to: IIKAVIDGTCLLQDLNWSLDMDT*LDMSSP Trigger: GGGGGATGACATGTCCAACAAAGTATCCATGTCCAG...GGACCAGTTTAGATCCTGTAGTAAACATGTCCCATCTATGACTGCCTTGATTAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017153.4 |
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| CDS GCA 72 bp | TCTCTTCCAGTTCCTTGGGCTCTGAGGGGACACGGATaGCAGGCTGTGCATTCTCAGGGATGTGGTTATCCA | + |
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Preference number: 6 (lower is better) Translates to: SLPVPWALRGHG*QAVHSQGCGYP Trigger: TGGATAACCACATCCCTGAGAATGCACAGCCTGGCATCCGTGTCCCCTCAGAGCCCAAGGAACTGGAAGAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017153.4 |
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| CDS CCA 72 bp | GGGACACGGATGCCAGGCTGTGCATTCTCAGGGATGTaGTTATCCAGTGGCACCAAGGGCTCAATCACTTCA | + |
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Preference number: 6 (lower is better) Translates to: GTRMPGCAFSGM*LSSGTKGSITS Trigger: TGAAGTGATTGAGCCCTTGGTGCCACTGGATAACCACATCCCTGAGAATGCACAGCCTGGCATCCGTGTCCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017153.4 |
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| CDS CAA 72 bp | GCCCTTTTAGGAATGACCTCATTCTCTTCCAGTTCCTaGGGCTCTGAGGGGACACGGATGCCAGGCTGTGCA | + |
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Preference number: 6 (lower is better) Translates to: ALLGMTSFSSSS*GSEGTRMPGCA Trigger: TGCACAGCCTGGCATCCGTGTCCCCTCAGAGCCCAAGGAACTGGAAGAGAATGAGGTCATTCCTAAAAGGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017153.4 |
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