Pregenerated sensors for SDC2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022261Ensembl transcript IDs: ENSMUST00000022871.7
Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGTGGCTGTGGTTGTCACTTACAGGGTTCTTCTGTAGGGGAGCTTTaGCAGGTAAGCAATTCTATAGGTCTGTTCCCCAGACACCTACTT | + |
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Preference number: 1 (lower is better) Translates to: SGCGCHLQGSSVGEL*QVSNSIGLFPRHLL Trigger: AAGTAGGTGTCTGGGGAACAGACCTATAGAATTGCTTACCTGTCAAAGCTCCCCTACAGAAGAACCCTGTAAGTGACAACCACAGCCACT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022871.7 |
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| 3UTR-3UTR TCA 90 bp | GGCAGAGCCCCCTACCTTCCCTCCTACCCCATGGAGTGGCTGTGGTTGTCACTTTCTGTAGGGGAGCTTTaGCAGGTAAGCAATTCTATA | + |
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Preference number: 2 (lower is better) Translates to: GRAPYLPSYPMEWLWLSLSVGEL*QVSNSI Trigger: TATAGAATTGCTTACCTGTCAAAGCTCCCCTACAGA...AAGTGACAACCACAGCCACTCCATGGGGTAGGAGGGAAGGTAGGGGGCTCTGCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000022871.7 |
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| 3UTR-3UTR GCA 90 bp | CCCCCTACCTTCCCTCCTACCCCATGGAGTGGCTGTGGTTGTCACTTACAGGGTCAGTCATCCTATTCCTaGACCCAAATACATGCAGAA | + |
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Preference number: 2 (lower is better) Translates to: PPTFPPTPWSGCGCHLQGQSSYS*TQIHAE Trigger: TTCTGCATGTATTTGGGTGCAGGAATAGGATGACTG...ACCCTGTAAGTGACAACCACAGCCACTCCATGGGGTAGGAGGGAAGGTAGGGGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022871.7 |
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| 3UTR-3UTR GCA 90 bp | CCCCCTACCTTCCCTCCTACCCCATGGAGTGGCTGTGGTTGTCACTTACAGGGTTTGCCTTTGCAAATCTaGCTGAAGCTACAAGTAATG | + |
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Preference number: 2 (lower is better) Translates to: PPTFPPTPWSGCGCHLQGLPLQI*LKLQVM Trigger: CATTACTTGTAGCTTCAGGCAGATTTGCAAAGGCAA...ACCCTGTAAGTGACAACCACAGCCACTCCATGGGGTAGGAGGGAAGGTAGGGGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022871.7 |
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| 3UTR-3UTR GCA 90 bp | GGCAGAGCCCCCTACCTTCCCTCCTACCCCATGGAGTGGCTGTGGTTGTCACTTATAATATTTTGCCACTaGTATTCACAGAACACTGCA | + |
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Preference number: 2 (lower is better) Translates to: GRAPYLPSYPMEWLWLSLIIFCH*YSQNTA Trigger: TGCAGTGTTCTGTGAATAGCAGTGGCAAAATATTAT...AAGTGACAACCACAGCCACTCCATGGGGTAGGAGGGAAGGTAGGGGGCTCTGCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000022871.7 |
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| 3UTR CAA 90 bp | GAGTGGCTGTGGTTGTCACTTACAGGGTTCTTCTGTAGGGGAGCTTaGACAGGTAAGCAATTCTATAGGTCTGTTCCCCAGACACCTACT | + |
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Preference number: 2 (lower is better) Translates to: EWLWLSLTGFFCRGA*TGKQFYRSVPQTPT Trigger: AGTAGGTGTCTGGGGAACAGACCTATAGAATTGCTTACCTGTCAAAGCTCCCCTACAGAAGAACCCTGTAAGTGACAACCACAGCCACTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022871.7 |
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| 3UTR-3UTR GCA 90 bp | TCCTCCTCTGGCATTACCTTTTCTAGAAACATCCATCTTAAGCAGCCAGGCTGTGTGGCCAGAGGAATCTaGAGCAACTTCTCAAAATAC | + |
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Preference number: 2 (lower is better) Translates to: SSSGITFSRNIHLKQPGCVARGI*SNFSKY Trigger: GTATTTTGAGAAGTTGCTGCAGATTCCTCTGGCCAC...ACAGCCTGGCTGCTTAAGATGGATGTTTCTAGAAAAGGTAATGCCAGAGGAGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022871.7 |
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| 3UTR CAA 90 bp | TCTCTCTCAATATTGTCAGTAGCTACACTACAAAGGCTGCAAACCTaGAAATCCCCTGGCAGTCATCCTATTCCTGCACCCAAATACATG | + |
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Preference number: 2 (lower is better) Translates to: SLSILSVATLQRLQT*KSPGSHPIPAPKYM Trigger: CATGTATTTGGGTGCAGGAATAGGATGACTGCCAGGGGATTTCAAGGTTTGCAGCCTTTGTAGTGTAGCTACTGACAATATTGAGAGAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022871.7 |
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| 3UTR-3UTR TCA 90 bp | TCCTCCTCTGGCATTACCTTTTCTAGAAACATCCATCTTAAGCAGCCAGGCTGTAGTAGCAGTCATCTTTaGACCAGAGGACAAACACAA | + |
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Preference number: 2 (lower is better) Translates to: SSSGITFSRNIHLKQPGCSSSHL*TRGQTQ Trigger: TTGTGTTTGTCCTCTGGTTCAAAGATGACTGCTACT...ACAGCCTGGCTGCTTAAGATGGATGTTTCTAGAAAAGGTAATGCCAGAGGAGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022871.7 |
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| 3UTR-3UTR TCA 90 bp | TCTGGCATTACCTTTTCTAGAAACATCCATCTTAAGCAGCCAGGCTGTCATTCAGGGGTTCTTTGGTCTTaGTTGACAGACACCATGAGA | + |
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Preference number: 2 (lower is better) Translates to: SGITFSRNIHLKQPGCHSGVLWS*LTDTMR Trigger: TCTCATGGTGTCTGTCAATCAAGACCAAAGAACCCC...TGAATGACAGCCTGGCTGCTTAAGATGGATGTTTCTAGAAAAGGTAATGCCAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022871.7 |
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| 3UTR-3UTR TCA 90 bp | AGGCCATTAAAGATTCAGACACAGCACTGTTTCAAGTGTTACTTTAGTTTTGTTAAAGGCTGCAAACCTTaGAATCCCCTGGCAGTCATC | + |
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Preference number: 2 (lower is better) Translates to: RPLKIQTQHCFKCYFSFVKGCKP*NPLAVI Trigger: GATGACTGCCAGGGGATTTCAAGGTTTGCAGCCTTT...AACAAAACTAAAGTAACACTTGAAACAGTGCTGTGTCTGAATCTTTAATGGCCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022871.7 |
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| 3UTR-3UTR TCA 90 bp | AGGCCATTAAAGATTCAGACACAGCACTGTTTCAAGTGTTACTTTAGTTTTGTTCATCTTTGGGTTTGCTaGGGCTTGTCCGTTATGTCA | + |
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Preference number: 2 (lower is better) Translates to: RPLKIQTQHCFKCYFSFVHLWVC*GLSVMS Trigger: TGACATAACGGACAAGCCTCAGCAAACCCAAAGATG...AACAAAACTAAAGTAACACTTGAAACAGTGCTGTGTCTGAATCTTTAATGGCCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022871.7 |
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| 3UTR-3UTR GCA 90 bp | AGGCCATTAAAGATTCAGACACAGCACTGTTTCAAGTGTTACTTTAGTTTTGTTTTATGCTGGAAAAGCTaGGGATCTTGCTGTCTTCTT | + |
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Preference number: 2 (lower is better) Translates to: RPLKIQTQHCFKCYFSFVLCWKS*GSCCLL Trigger: AAGAAGACAGCAAGATCCGCAGCTTTTCCAGCATAA...AACAAAACTAAAGTAACACTTGAAACAGTGCTGTGTCTGAATCTTTAATGGCCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000022871.7 |
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| 3UTR CCA 72 bp | GGCAGAGCCCCCTACCTTCCCTCCTACCCCATGGAGTaGCTGTGGTTGTCACTTACAGGGTTCTTCTGTAGG | + |
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Preference number: 3 (lower is better) Translates to: GRAPYLPSYPME*LWLSLTGFFCR Trigger: CCTACAGAAGAACCCTGTAAGTGACAACCACAGCCACTCCATGGGGTAGGAGGGAAGGTAGGGGGCTCTGCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022871.7 |
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| 3UTR-3UTR CAA 90 bp | GGCAGAGCCCCCTACCTTCCCTCCTACCCCATGGAGTGGCTGTGGTTGTCACTTCACATTAATTTGCCTTaGCAAATCTGCCTGAAGCTA | + |
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Preference number: 3 (lower is better) Translates to: GRAPYLPSYPMEWLWLSLHINLP*QICLKL Trigger: TAGCTTCAGGCAGATTTGCAAAGGCAAATTAATGTG...AAGTGACAACCACAGCCACTCCATGGGGTAGGAGGGAAGGTAGGGGGCTCTGCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022871.7 |
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| 3UTR-3UTR CAA 90 bp | CCCCCTACCTTCCCTCCTACCCCATGGAGTGGCTGTGGTTGTCACTTACAGGGTGCATCTCTCTCAATATaGTCAGTAGCTACACTACAA | + |
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Preference number: 3 (lower is better) Translates to: PPTFPPTPWSGCGCHLQGASLSI*SVATLQ Trigger: TTGTAGTGTAGCTACTGACAATATTGAGAGAGATGC...ACCCTGTAAGTGACAACCACAGCCACTCCATGGGGTAGGAGGGAAGGTAGGGGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022871.7 |
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| 3UTR-3UTR CAA 90 bp | ACCCATATAGTCACTGAGAGCAGACGGTCAGTCACAGCAAGGGGAGATGTACATTTAGCATCTTTGGGTTaGCTGAGGCTTGTCCGTTAT | + |
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Preference number: 3 (lower is better) Translates to: THIVTESRRSVTARGDVHLASLG*LRLVRY Trigger: ATAACGGACAAGCCTCAGCAAACCCAAAGATGCTAA...ATGTACATCTCCCCTTGCTGTGACTGACCGTCTGCTCTCAGTGACTATATGGGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022871.7 |
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| 3UTR CCA 72 bp | AGCTACACTACAAAGGCTGCAAACCTTGAAATCCCCTaGCAGTCATCCTATTCCTGCACCCAAATACATGCA | + |
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Preference number: 3 (lower is better) Translates to: SYTTKAANLEIP*QSSYSCTQIHA Trigger: TGCATGTATTTGGGTGCAGGAATAGGATGACTGCCAGGGGATTTCAAGGTTTGCAGCCTTTGTAGTGTAGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022871.7 |
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| 3UTR-3UTR CAA 90 bp | TCCTCCTCTGGCATTACCTTTTCTAGAAACATCCATCTTAAGCAGCCAGGCTGTATACTGTTAGCATCTTaGGGTTTGCTGAGGCTTGTC | + |
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Preference number: 3 (lower is better) Translates to: SSSGITFSRNIHLKQPGCILLAS*GLLRLV Trigger: GACAAGCCTCAGCAAACCCAAAGATGCTAACAGTAT...ACAGCCTGGCTGCTTAAGATGGATGTTTCTAGAAAAGGTAATGCCAGAGGAGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022871.7 |
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| 3UTR-3UTR CAA 90 bp | GCAAACCTTGAAATCCCCTGGCAGTCATCCTATTCCTGCACCCAAATACATGCATCATTCAAAGACAAATaGCACCATGACAGCTACAAA | + |
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Preference number: 3 (lower is better) Translates to: ANLEIPWQSSYSCTQIHASFKDK*HHDSYK Trigger: TTTGTAGCTGTCATGGTGCAATTTGTCTTTGAATGA...TGCATGTATTTGGGTGCAGGAATAGGATGACTGCCAGGGGATTTCAAGGTTTGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022871.7 |
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| 3UTR TCA 72 bp | AGCTTTGGAAGGGCCCATCATTTCCTTTTAACATGGTaGATTACAGCTGTAATTGGACAGAAAGGTATGAAT | + |
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Preference number: 3 (lower is better) Translates to: SFGRAHHFLLTW*ITAVIGQKGMN Trigger: ATTCATACCTTTCTGTCCAATTACAGCTGTAATTCACCATGTTAAAAGGAAATGATGGGCCCTTCCAAAGCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022871.7 |
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| 3UTR TCA 72 bp | ACCACACTAAGCAGAGAGTATACAGAAAATTGGATGTaGGTCTATACAATGAGTTACTTTCGGCATGACAGA | + |
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Preference number: 3 (lower is better) Translates to: TTLSREYTENWM*VYTMSYFRHDR Trigger: TCTGTCATGCCGAAAGTAACTCATTGTATAGACTCACATCCAATTTTCTGTATACTCTCTGCTTAGTGTGGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022871.7 |
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| 3UTR GCA 72 bp | CTGTTCCCCAGACACCTACTTCTAGAAAGGTCGCTTTaGTTCTTTGGAATTTATACTTTTAAGAGTAAATTG | + |
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Preference number: 3 (lower is better) Translates to: LFPRHLLLERSL*FFGIYTFKSKL Trigger: CAATTTACTCTTAAAAGTATAAATTCCAAAGAAGCAAAGCGACCTTTCTAGAAGTAGGTGTCTGGGGAACAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022871.7 |
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| CDS-3UTR TCA 90 bp | CCCCCTACCTTCCCTCCTACCCCATGGAGTGGCTGTGGTTGTCACTTACAGGGTCCATCAAGCCCAAGGTaGGCAGGATCCACGCGCGCT | + |
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Preference number: 4 (lower is better) Translates to: PPTFPPTPWSGCGCHLQGPSSPR*AGSTRA Trigger: AGCGCGCGTGGATCCTGCTCACCTTGGGCTTGATGG...ACCCTGTAAGTGACAACCACAGCCACTCCATGGGGTAGGAGGGAAGGTAGGGGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022871.7 |
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| CDS-3UTR GCA 90 bp | GGCAGAGCCCCCTACCTTCCCTCCTACCCCATGGAGTGGCTGTGGTTGTCACTTCTCTGTTCTCGTCTCTaGGGACACACAGGCCATCAA | + |
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Preference number: 4 (lower is better) Translates to: GRAPYLPSYPMEWLWLSLLCSRL*GHTGHQ Trigger: TTGATGGCCTGTGTGTCCGCAGAGACGAGAACAGAG...AAGTGACAACCACAGCCACTCCATGGGGTAGGAGGGAAGGTAGGGGGCTCTGCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022871.7 |
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| CDS-3UTR GCA 90 bp | GGCAGAGCCCCCTACCTTCCCTCCTACCCCATGGAGTGGCTGTGGTTGTCACTTTGCCTTCTGGTAAGCTaGGCTGGATGGTTTGCGTTC | + |
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Preference number: 4 (lower is better) Translates to: GRAPYLPSYPMEWLWLSLCLLVS*AGWFAF Trigger: GAACGCAAACCATCCAGCGCAGCTTACCAGAAGGCA...AAGTGACAACCACAGCCACTCCATGGGGTAGGAGGGAAGGTAGGGGGCTCTGCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022871.7 |
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| CDS-3UTR GCA 90 bp | GGCAGAGCCCCCTACCTTCCCTCCTACCCCATGGAGTGGCTGTGGTTGTCACTTAAACTCCTTAGTGGGTaGCTTCTGGTAAGCTGCGCT | + |
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Preference number: 4 (lower is better) Translates to: GRAPYLPSYPMEWLWLSLKLLSG*LLVSCA Trigger: AGCGCAGCTTACCAGAAGGCACCCACTAAGGAGTTT...AAGTGACAACCACAGCCACTCCATGGGGTAGGAGGGAAGGTAGGGGGCTCTGCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022871.7 |
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| CDS-3UTR TCA 90 bp | CCCCCTACCTTCCCTCCTACCCCATGGAGTGGCTGTGGTTGTCACTTACAGGGTGTCAGTTTCTTCAGGTaGCTCAGTCTGAGCAGGTGT | + |
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Preference number: 4 (lower is better) Translates to: PPTFPPTPWSGCGCHLQGVSFFR*LSLSRC Trigger: ACACCTGCTCAGACTGAGTCACCTGAAGAAACTGAC...ACCCTGTAAGTGACAACCACAGCCACTCCATGGGGTAGGAGGGAAGGTAGGGGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022871.7 |
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| 3UTR CAA 72 bp | CCCTACCTTCCCTCCTACCCCATGGAGTGGCTGTGGTaGTCACTTACAGGGTTCTTCTGTAGGGGAGCTTTG | + |
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Preference number: 4 (lower is better) Translates to: PYLPSYPMEWLW*SLTGFFCRGAL Trigger: CAAAGCTCCCCTACAGAAGAACCCTGTAAGTGACAACCACAGCCACTCCATGGGGTAGGAGGGAAGGTAGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022871.7 |
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| CDS-3UTR GCA 90 bp | GCAAACCTTGAAATCCCCTGGCAGTCATCCTATTCCTGCACCCAAATACATGCACTGCGCTGGATGGTTTaGGTTCTCCAAGGTCGTAGC | + |
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Preference number: 4 (lower is better) Translates to: ANLEIPWQSSYSCTQIHALRWMV*VLQGRS Trigger: GCTACGACCTTGGAGAACGCAAACCATCCAGCGCAG...TGCATGTATTTGGGTGCAGGAATAGGATGACTGCCAGGGGATTTCAAGGTTTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022871.7 |
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| CDS-3UTR CCA 90 bp | TCCTCCTCTGGCATTACCTTTTCTAGAAACATCCATCTTAAGCAGCCAGGCTGTGTAAGCTGCGCTGGATaGTTTGCGTTCTCCAAGGTC | + |
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Preference number: 4 (lower is better) Translates to: SSSGITFSRNIHLKQPGCVSCAG*FAFSKV Trigger: GACCTTGGAGAACGCAAACCATCCAGCGCAGCTTAC...ACAGCCTGGCTGCTTAAGATGGATGTTTCTAGAAAAGGTAATGCCAGAGGAGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022871.7 |
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| CDS-3UTR CCA 90 bp | GCAAACCTTGAAATCCCCTGGCAGTCATCCTATTCCTGCACCCAAATACATGCATCTGGTAAGCTGCGCTaGATGGTTTGCGTTCTCCAA | + |
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Preference number: 4 (lower is better) Translates to: ANLEIPWQSSYSCTQIHASGKLR*MVCVLQ Trigger: TTGGAGAACGCAAACCATCCAGCGCAGCTTACCAGA...TGCATGTATTTGGGTGCAGGAATAGGATGACTGCCAGGGGATTTCAAGGTTTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022871.7 |
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| CDS-3UTR CCA 90 bp | ACCCATATAGTCACTGAGAGCAGACGGTCAGTCACAGCAAGGGGAGATGTACATGGATGTTGTCAGAACTaGACTCTCTATGTCTTCATC | + |
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Preference number: 4 (lower is better) Translates to: THIVTESRRSVTARGDVHGCCQN*TLYVFI Trigger: GATGAAGACATAGAGAGTCCAGTTCTGACAACATCC...ATGTACATCTCCCCTTGCTGTGACTGACCGTCTGCTCTCAGTGACTATATGGGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022871.7 |
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| CDS-3UTR CCA 90 bp | TCCTCCTCTGGCATTACCTTTTCTAGAAACATCCATCTTAAGCAGCCAGGCTGTGTGTCTTCAACGTCATaGTTTCCACTTTGGGGGAAG | + |
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Preference number: 4 (lower is better) Translates to: SSSGITFSRNIHLKQPGCVSSTS*FPLWGK Trigger: CTTCCCCCAAAGTGGAAACCATGACGTTGAAGACAC...ACAGCCTGGCTGCTTAAGATGGATGTTTCTAGAAAAGGTAATGCCAGAGGAGGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022871.7 |
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| 3UTR CAA 72 bp | ATATTGTCAGTAGCTACACTACAAAGGCTGCAAACCTaGAAATCCCCTGGCAGTCATCCTATTCCTGCACCC | + |
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Preference number: 4 (lower is better) Translates to: ILSVATLQRLQT*KSPGSHPIPAP Trigger: GGGTGCAGGAATAGGATGACTGCCAGGGGATTTCAAGGTTTGCAGCCTTTGTAGTGTAGCTACTGACAATAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022871.7 |
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| CDS-3UTR CCA 90 bp | TCTGGCATTACCTTTTCTAGAAACATCCATCTTAAGCAGCCAGGCTGTCATTCACTGAAGCTTCCTCAATaGAGCTATTGTCAAGGTACA | + |
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Preference number: 4 (lower is better) Translates to: SGITFSRNIHLKQPGCHSLKLPQ*SYCQGT Trigger: TGTACCTTGACAATAGCTCCATTGAGGAAGCTTCAG...TGAATGACAGCCTGGCTGCTTAAGATGGATGTTTCTAGAAAAGGTAATGCCAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022871.7 |
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| CDS-3UTR TCA 90 bp | AGGCCATTAAAGATTCAGACACAGCACTGTTTCAAGTGTTACTTTAGTTTTGTTTCAGGTGACTCAGTCTaGGCAGGTGTAATGCTTTGT | + |
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Preference number: 4 (lower is better) Translates to: RPLKIQTQHCFKCYFSFVSGDSV*AGVMLC Trigger: ACAAAGCATTACACCTGCTCAGACTGAGTCACCTGA...AACAAAACTAAAGTAACACTTGAAACAGTGCTGTGTCTGAATCTTTAATGGCCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022871.7 |
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| CDS-3UTR TCA 90 bp | AGGCCATTAAAGATTCAGACACAGCACTGTTTCAAGTGTTACTTTAGTTTTGTTACACCAATAGCAGGATaGGGAAAATGGCAAAGAGAA | + |
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Preference number: 4 (lower is better) Translates to: RPLKIQTQHCFKCYFSFVTPIAG*GKWQRE Trigger: TTCTCTTTGCCATTTTCCTCATCCTGCTATTGGTGT...AACAAAACTAAAGTAACACTTGAAACAGTGCTGTGTCTGAATCTTTAATGGCCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022871.7 |
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| 3UTR CAA 72 bp | TTTTTAAACCACACTAAGCAGAGAGTATACAGAAAATaGGATGTGAGTCTATACAATGAGTTACTTTCGGCA | + |
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Preference number: 4 (lower is better) Translates to: FLNHTKQRVYRK*DVSLYNELLSA Trigger: TGCCGAAAGTAACTCATTGTATAGACTCACATCCAATTTTCTGTATACTCTCTGCTTAGTGTGGTTTAAAAA 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022871.7 |
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| CDS-3UTR CAA 90 bp | GGCAGAGCCCCCTACCTTCCCTCCTACCCCATGGAGTGGCTGTGGTTGTCACTTGTCCGTTTAAACAGATaGTCTGAATGTTTCTCCGTG | + |
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Preference number: 5 (lower is better) Translates to: GRAPYLPSYPMEWLWLSLVRLNR*SECFSV Trigger: CACGGAGAAACATTCAGACAATCTGTTTAAACGGAC...AAGTGACAACCACAGCCACTCCATGGGGTAGGAGGGAAGGTAGGGGGCTCTGCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022871.7 |
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| CDS CCA 90 bp | TGCATAAAACTCCTTAGTGGGTGCCTTCTGGTAAGCTGCGCTGGATaGTTTGCGTTCTCCAAGGTCGTAGCTTCCTTCATCTTTCTTCCG | + |
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Preference number: 5 (lower is better) Translates to: CIKLLSGCLLVSCAG*FAFSKVVASFIFLP Trigger: CGGAAGAAAGATGAAGGAAGCTACGACCTTGGAGAACGCAAACCATCCAGCGCAGCTTACCAGAAGGCACCCACTAAGGAGTTTTATGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022871.7 |
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| CDS-3UTR CAA 90 bp | ACCCATATAGTCACTGAGAGCAGACGGTCAGTCACAGCAAGGGGAGATGTACATTCCTCAATGGAGCTATaGTCAAGGTACATATCCTTA | + |
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Preference number: 5 (lower is better) Translates to: THIVTESRRSVTARGDVHSSMEL*SRYISL Trigger: TAAGGATATGTACCTTGACAATAGCTCCATTGAGGA...ATGTACATCTCCCCTTGCTGTGACTGACCGTCTGCTCTCAGTGACTATATGGGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022871.7 |
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| CDS-3UTR CAA 90 bp | TCCTCCTCTGGCATTACCTTTTCTAGAAACATCCATCTTAAGCAGCCAGGCTGTGAATCAGTTGGGATGTaGTCAGAACTGGACTCTCTA | + |
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Preference number: 5 (lower is better) Translates to: SSSGITFSRNIHLKQPGCESVGM*SELDSL Trigger: TAGAGAGTCCAGTTCTGACAACATCCCAACTGATTC...ACAGCCTGGCTGCTTAAGATGGATGTTTCTAGAAAAGGTAATGCCAGAGGAGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022871.7 |
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| CDS TCA 90 bp | TTCTGCCTCAGAAATGTCAACTTCCTCCTTGTCAGTTTCTTCAGGTaGCTCAGTCTGAGCAGGTGTAATGCTTTGTGTCTTCAACGTCAT | + |
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Preference number: 5 (lower is better) Translates to: FCLRNVNFLLVSFFR*LSLSRCNALCLQRH Trigger: ATGACGTTGAAGACACAAAGCATTACACCTGCTCAGACTGAGTCACCTGAAGAAACTGACAAGGAGGAAGTTGACATTTCTGAGGCAGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022871.7 |
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| CDS CCA 72 bp | CTCCTTAGTGGGTGCCTTCTGGTAAGCTGCGCTGGATaGTTTGCGTTCTCCAAGGTCGTAGCTTCCTTCATC | + |
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Preference number: 6 (lower is better) Translates to: LLSGCLLVSCAG*FAFSKVVASFI Trigger: GATGAAGGAAGCTACGACCTTGGAGAACGCAAACCATCCAGCGCAGCTTACCAGAAGGCACCCACTAAGGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022871.7 |
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| CDS CAA 72 bp | GGAAGCAGCACTAGTGAGTGGGATTCTTGGAATCAGTaGGGATGTTGTCAGAACTGGACTCTCTATGTCTTC | + |
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Preference number: 6 (lower is better) Translates to: GSSTSEWDSWNQ*GCCQNWTLYVF Trigger: GAAGACATAGAGAGTCCAGTTCTGACAACATCCCAACTGATTCCAAGAATCCCACTCACTAGTGCTGCTTCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022871.7 |
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| CDS CAA 90 bp | CCACCAGCAATGACGGCTGCTAGAACTTCTGTCCGTTTAAACAGATaGTCTGAATGTTTCTCCGTGTACACATCTGTGCTTTTTATAGCA | + |
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Preference number: 6 (lower is better) Translates to: PPAMTAARTSVRLNR*SECFSVYTSVLFIA Trigger: TGCTATAAAAAGCACAGATGTGTACACGGAGAAACATTCAGACAATCTGTTTAAACGGACAGAAGTTCTAGCAGCCGTCATTGCTGGTGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022871.7 |
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| CDS CAA 72 bp | ATGACGGCTGCTAGAACTTCTGTCCGTTTAAACAGATaGTCTGAATGTTTCTCCGTGTACACATCTGTGCTT | + |
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Preference number: 6 (lower is better) Translates to: MTAARTSVRLNR*SECFSVYTSVL Trigger: AAGCACAGATGTGTACACGGAGAAACATTCAGACAATCTGTTTAAACGGACAGAAGTTCTAGCAGCCGTCAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022871.7 |
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| CDS CAA 90 bp | TCATCATCAATAGGATATACTCCTGAAGCTTCCTCAATGGAGCTATaGTCAAGGTACATATCCTTATCGGATGTCAGCTCTGTTCTCGTC | + |
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Preference number: 6 (lower is better) Translates to: SSSIGYTPEASSMEL*SRYISLSDVSSVLV Trigger: GACGAGAACAGAGCTGACATCCGATAAGGATATGTACCTTGACAATAGCTCCATTGAGGAAGCTTCAGGAGTATATCCTATTGATGATGA 42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022871.7 |
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