Pregenerated sensors for SCX (Mus musculus)
Ensembl gene IDs: ENSMUSG00000034161Ensembl transcript IDs: ENSMUST00000043089.9
Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ATCACCCGCCTGTCCATCTCTCTGTTCATAGGCCCTGCTCATAGCTaGGGCAGGTCTGGCCTGGTGAGCGTGCTCTTGGGGACCTGCGCT | + |
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Preference number: 1 (lower is better) Translates to: ITRLSISLFIGPAHS*GRSGLVSVLLGTCA Trigger: AGCGCAGGTCCCCAAGAGCACGCTCACCAGGCCAGACCTGCCCCAGCTATGAGCAGGGCCTATGAACAGAGAGATGGACAGGCGGGTGAT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043089.9 |
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| 3UTR CCA 90 bp | CACTTGGCCCAGGTAGAGAGCCAGCATGGAAAGTCCCAGTGGGCCTaGGTCAGTGTTCGGCTGCTTAGAGTCAAGCCATCACCCGCCTGT | + |
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Preference number: 1 (lower is better) Translates to: HLAQVESQHGKSQWA*VSVRLLRVKPSPAC Trigger: ACAGGCGGGTGATGGCTTGACTCTAAGCAGCCGAACACTGACCCAGGCCCACTGGGACTTTCCATGCTGGCTCTCTACCTGGGCCAAGTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043089.9 |
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| 3UTR CCA 90 bp | TGCCAACACTTGGCCCAGGTAGAGAGCCAGCATGGAAAGTCCCAGTaGGCCTGGGTCAGTGTTCGGCTGCTTAGAGTCAAGCCATCACCC | + |
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Preference number: 1 (lower is better) Translates to: CQHLAQVESQHGKSQ*AWVSVRLLRVKPSP Trigger: GGGTGATGGCTTGACTCTAAGCAGCCGAACACTGACCCAGGCCCACTGGGACTTTCCATGCTGGCTCTCTACCTGGGCCAAGTGTTGGCA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043089.9 |
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| 3UTR-3UTR CCA 90 bp | TGCCAACACTTGGCCCAGGTAGAGAGCCAGCATGGAAAGTCCCAGTGGGCCTGGGGCCCTGCTCATAGCTaGGGCAGGTCTGGCCTGGTG | + |
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Preference number: 2 (lower is better) Translates to: CQHLAQVESQHGKSQWAWGPAHS*GRSGLV Trigger: CACCAGGCCAGACCTGCCCCAGCTATGAGCAGGGCC...CCAGGCCCACTGGGACTTTCCATGCTGGCTCTCTACCTGGGCCAAGTGTTGGCA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043089.9 |
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| 3UTR-3UTR GCA 90 bp | TTGGCCCAGGTAGAGAGCCAGCATGGAAAGTCCCAGTGGGCCTGGGTCAGTGTTGTGCTCTTGGGGACCTaGGCTCAGATCAGGTCCAAA | + |
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Preference number: 2 (lower is better) Translates to: LAQVESQHGKSQWAWVSVVLLGT*AQIRSK Trigger: TTTGGACCTGATCTGAGCGCAGGTCCCCAAGAGCAC...AACACTGACCCAGGCCCACTGGGACTTTCCATGCTGGCTCTCTACCTGGGCCAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043089.9 |
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| 3UTR-3UTR CCA 90 bp | TATCATATTAAAGACACAAGATGCCAACACTTGGCCCAGGTAGAGAGCCAGCATAGTGGCATCACCTCTTaGCTGCTGTGGACCCTCCTC | + |
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Preference number: 2 (lower is better) Translates to: YHIKDTRCQHLAQVESQHSGITS*LLWTLL Trigger: GAGGAGGGTCCACAGCAGCCAAGAGGTGATGCCACT...ATGCTGGCTCTCTACCTGGGCCAAGTGTTGGCATCTTGTGTCTTTAATATGATA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043089.9 |
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| 3UTR-3UTR CCA 90 bp | TATCATATTAAAGACACAAGATGCCAACACTTGGCCCAGGTAGAGAGCCAGCATTCCGTGACTCTTCAGTaGCATCCACCTTCACTAGTG | + |
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Preference number: 2 (lower is better) Translates to: YHIKDTRCQHLAQVESQHSVTLQ*HPPSLV Trigger: CACTAGTGAAGGTGGATGCCACTGAAGAGTCACGGA...ATGCTGGCTCTCTACCTGGGCCAAGTGTTGGCATCTTGTGTCTTTAATATGATA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043089.9 |
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| 3UTR-3UTR CCA 90 bp | TTATATTATCATATTAAAGACACAAGATGCCAACACTTGGCCCAGGTAGAGAGCCATGGAAAGTCCCAGTaGGCCTGGGTCAGTGTTCGG | + |
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Preference number: 2 (lower is better) Translates to: LYYHIKDTRCQHLAQVESHGKSQ*AWVSVR Trigger: CCGAACACTGACCCAGGCCCACTGGGACTTTCCATG...GCTCTCTACCTGGGCCAAGTGTTGGCATCTTGTGTCTTTAATATGATAATATAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043089.9 |
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| 3UTR GCA 72 bp | GGCAGGTCTGGCCTGGTGAGCGTGCTCTTGGGGACCTaGGCTCAGATCAGGTCCAAAGTGGGGCTCTCCGTG | + |
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Preference number: 3 (lower is better) Translates to: GRSGLVSVLLGT*AQIRSKVGLSV Trigger: CACGGAGAGCCCCACTTTGGACCTGATCTGAGCGCAGGTCCCCAAGAGCACGCTCACCAGGCCAGACCTGCC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043089.9 |
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| 3UTR CCA 72 bp | CTGTCCATCTCTCTGTTCATAGGCCCTGCTCATAGCTaGGGCAGGTCTGGCCTGGTGAGCGTGCTCTTGGGG | + |
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Preference number: 3 (lower is better) Translates to: LSISLFIGPAHS*GRSGLVSVLLG Trigger: CCCCAAGAGCACGCTCACCAGGCCAGACCTGCCCCAGCTATGAGCAGGGCCTATGAACAGAGAGATGGACAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043089.9 |
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| 3UTR CCA 72 bp | TTGGCCCAGGTAGAGAGCCAGCATGGAAAGTCCCAGTaGGCCTGGGTCAGTGTTCGGCTGCTTAGAGTCAAG | + |
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Preference number: 3 (lower is better) Translates to: LAQVESQHGKSQ*AWVSVRLLRVK Trigger: CTTGACTCTAAGCAGCCGAACACTGACCCAGGCCCACTGGGACTTTCCATGCTGGCTCTCTACCTGGGCCAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043089.9 |
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| 3UTR CCA 72 bp | AAGATGCCAACACTTGGCCCAGGTAGAGAGCCAGCATaGAAAGTCCCAGTGGGCCTGGGTCAGTGTTCGGCT | + |
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Preference number: 3 (lower is better) Translates to: KMPTLGPGREPA*KVPVGLGQCSA Trigger: AGCCGAACACTGACCCAGGCCCACTGGGACTTTCCATGCTGGCTCTCTACCTGGGCCAAGTGTTGGCATCTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043089.9 |
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| 3UTR CCA 72 bp | CAGGTAGAGAGCCAGCATGGAAAGTCCCAGTGGGCCTaGGTCAGTGTTCGGCTGCTTAGAGTCAAGCCATCA | + |
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Preference number: 3 (lower is better) Translates to: QVESQHGKSQWA*VSVRLLRVKPS Trigger: TGATGGCTTGACTCTAAGCAGCCGAACACTGACCCAGGCCCACTGGGACTTTCCATGCTGGCTCTCTACCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043089.9 |
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| CDS-3UTR GCA 90 bp | TTGGCCCAGGTAGAGAGCCAGCATGGAAAGTCCCAGTGGGCCTGGGTCAGTGTTCGCGCATTCGCTGTGTaGCGCTGCCGGGGCTCGCGG | + |
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Preference number: 4 (lower is better) Translates to: LAQVESQHGKSQWAWVSVRAFAV*RCRGSR Trigger: CCGCGAGCCCCGGCAGCGGCACACAGCGAATGCGCG...AACACTGACCCAGGCCCACTGGGACTTTCCATGCTGGCTCTCTACCTGGGCCAA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043089.9 |
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| CDS-3UTR CCA 90 bp | GCCAGCATGGAAAGTCCCAGTGGGCCTGGGTCAGTGTTCGGCTGCTTAGAGTCAGTCTCTGGCCAGTGGTaGTGGCGGCGGCGGCGGTGG | + |
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Preference number: 4 (lower is better) Translates to: ASMESPSGPGSVFGCLESVSGQW*WRRRRW Trigger: CCACCGCCGCCGCCGCCACCACCACTGGCCAGAGAC...TGACTCTAAGCAGCCGAACACTGACCCAGGCCCACTGGGACTTTCCATGCTGGC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043089.9 |
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| 3UTR CAA 72 bp | CATAGCTGGGGCAGGTCTGGCCTGGTGAGCGTGCTCTaGGGGACCTGCGCTCAGATCAGGTCCAAAGTGGGG | + |
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Preference number: 4 (lower is better) Translates to: HSWGRSGLVSVL*GTCAQIRSKVG Trigger: CCCCACTTTGGACCTGATCTGAGCGCAGGTCCCCAAGAGCACGCTCACCAGGCCAGACCTGCCCCAGCTATG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043089.9 |
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| CDS-3UTR GCA 90 bp | CCAGGTAGAGAGCCAGCATGGAAAGTCCCAGTGGGCCTGGGTCAGTGTTCGGCTTGTTCACGCTGTTGGTaGGGTCCCGCTCGCGCGCAT | + |
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Preference number: 4 (lower is better) Translates to: PGREPAWKVPVGLGQCSACSRCW*GPARAH Trigger: ATGCGCGCGAGCGGGACCGCACCAACAGCGTGAACA...AGCCGAACACTGACCCAGGCCCACTGGGACTTTCCATGCTGGCTCTCTACCTGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043089.9 |
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| CDS-3UTR CCA 90 bp | CTGCGCTCAGATCAGGTCCAAAGTGGGGCTCTCCGTGACTCTTCAGTGGCATCCCAGATCTGTTTGGGCTaGGTGTTCTCGCCGCCGTCT | + |
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Preference number: 4 (lower is better) Translates to: LRSDQVQSGALRDSSVASQICLG*VFSPPS Trigger: AGACGGCGGCGAGAACACCCAGCCCAAACAGATCTG...GGATGCCACTGAAGAGTCACGGAGAGCCCCACTTTGGACCTGATCTGAGCGCAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043089.9 |
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| CDS-3UTR GCA 90 bp | TGCCAACACTTGGCCCAGGTAGAGAGCCAGCATGGAAAGTCCCAGTGGGCCTGGCCACCAGCAGCACATTaGCCAGGTGAGAAATGTAGC | + |
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Preference number: 4 (lower is better) Translates to: CQHLAQVESQHGKSQWAWPPAAH*PGEKCS Trigger: GCTACATTTCTCACCTGGGCAATGTGCTGCTGGTGG...CCAGGCCCACTGGGACTTTCCATGCTGGCTCTCTACCTGGGCCAAGTGTTGGCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043089.9 |
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| CDS-3UTR GCA 90 bp | CTGCGCTCAGATCAGGTCCAAAGTGGGGCTCTCCGTGACTCTTCAGTGGCATCCTTCTGTCACGGTCTTTaGTCAACTTTCTCTGGTTGC | + |
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Preference number: 4 (lower is better) Translates to: LRSDQVQSGALRDSSVASFCHGL*STFSGC Trigger: GCAACCAGAGAAAGTTGAGCAAAGACCGTGACAGAA...GGATGCCACTGAAGAGTCACGGAGAGCCCCACTTTGGACCTGATCTGAGCGCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043089.9 |
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| CDS-3UTR CCA 90 bp | TTATATTATCATATTAAAGACACAAGATGCCAACACTTGGCCCAGGTAGAGAGCAGGTGCAGATCTGTTTaGGCTGGGTGTTCTCGCCGC | + |
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Preference number: 4 (lower is better) Translates to: LYYHIKDTRCQHLAQVESRCRSV*AGCSRR Trigger: GCGGCGAGAACACCCAGCCCAAACAGATCTGCACCT...GCTCTCTACCTGGGCCAAGTGTTGGCATCTTGTGTCTTTAATATGATAATATAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043089.9 |
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| 3UTR CAA 72 bp | TTATATTATCATATTAAAGACACAAGATGCCAACACTaGGCCCAGGTAGAGAGCCAGCATGGAAAGTCCCAG | + |
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Preference number: 4 (lower is better) Translates to: LYYHIKDTRCQH*AQVESQHGKSQ Trigger: CTGGGACTTTCCATGCTGGCTCTCTACCTGGGCCAAGTGTTGGCATCTTGTGTCTTTAATATGATAATATAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043089.9 |
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| CDS GCA 90 bp | CCTCCTGCCCGCCGCCGGGCGCCCTGGAGGCCACAGCGCGCAGCATaGACACGGCAGGGTTTCTCGTCGGAGCCCGAGCTCTCGCTTCCG | + |
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Preference number: 5 (lower is better) Translates to: PPARRRAPWRPQRAA*TRQGFSSEPELSLP Trigger: CGGAAGCGAGAGCTCGGGCTCCGACGAGAAACCCTGCCGTGTGCATGCTGCGCGCTGTGGCCTCCAGGGCGCCCGGCGGCGGGCAGGAGG 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043089.9 |
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| CDS-3UTR CAA 90 bp | AGATGCCAACACTTGGCCCAGGTAGAGAGCCAGCATGGAAAGTCCCAGTGGGCCTCAATCTTGGAGAGCTaGCGGTCCGCTGGCTCGGTG | + |
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Preference number: 5 (lower is better) Translates to: RCQHLAQVESQHGKSQWASILES*RSAGSV Trigger: CACCGAGCCAGCGGACCGCAAGCTCTCCAAGATTGA...GGCCCACTGGGACTTTCCATGCTGGCTCTCTACCTGGGCCAAGTGTTGGCATCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043089.9 |
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| CDS-3UTR CAA 90 bp | TGCCAACACTTGGCCCAGGTAGAGAGCCAGCATGGAAAGTCCCAGTGGGCCTGGAAGGTGCAGATCTGTTaGGGCTGGGTGTTCTCGCCG | + |
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Preference number: 5 (lower is better) Translates to: CQHLAQVESQHGKSQWAWKVQIC*GWVFSP Trigger: CGGCGAGAACACCCAGCCCAAACAGATCTGCACCTT...CCAGGCCCACTGGGACTTTCCATGCTGGCTCTCTACCTGGGCCAAGTGTTGGCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043089.9 |
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| CDS-3UTR CAA 90 bp | GCCAGCATGGAAAGTCCCAGTGGGCCTGGGTCAGTGTTCGGCTGCTTAGAGTCATTTCTGTCACGGTCTTaGCTCAACTTTCTCTGGTTG | + |
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Preference number: 5 (lower is better) Translates to: ASMESPSGPGSVFGCLESFLSRS*LNFLWL Trigger: CAACCAGAGAAAGTTGAGCAAAGACCGTGACAGAAA...TGACTCTAAGCAGCCGAACACTGACCCAGGCCCACTGGGACTTTCCATGCTGGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043089.9 |
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| CDS GCA 72 bp | CGCCGCCGGGCGCCCTGGAGGCCACAGCGCGCAGCATaGACACGGCAGGGTTTCTCGTCGGAGCCCGAGCTC | + |
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Preference number: 6 (lower is better) Translates to: RRRAPWRPQRAA*TRQGFSSEPEL Trigger: GAGCTCGGGCTCCGACGAGAAACCCTGCCGTGTGCATGCTGCGCGCTGTGGCCTCCAGGGCGCCCGGCGGCG 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043089.9 |
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| CDS CAA 90 bp | GCCCGCACGACCGCTGTGGAAGAAAGCGGGTCCCGAGTGGCATGGTaGCCCGTCGCCACAGGCCTCACCCACCAGCAGCACATTGCCCAG | + |
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Preference number: 6 (lower is better) Translates to: ARTTAVEESGSRVAW*PVATGLTHQQHIAQ Trigger: CTGGGCAATGTGCTGCTGGTGGGTGAGGCCTGTGGCGACGGGCAACCATGCCACTCGGGACCCGCTTTCTTCCACAGCGGTCGTGCGGGC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043089.9 |
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| CDS CAA 72 bp | ACCGCTGTGGAAGAAAGCGGGTCCCGAGTGGCATGGTaGCCCGTCGCCACAGGCCTCACCCACCAGCAGCAC | + |
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Preference number: 6 (lower is better) Translates to: TAVEESGSRVAW*PVATGLTHQQH Trigger: GTGCTGCTGGTGGGTGAGGCCTGTGGCGACGGGCAACCATGCCACTCGGGACCCGCTTTCTTCCACAGCGGT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043089.9 |
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