Pregenerated sensors for SCRN3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000008226Ensembl transcript IDs: ENSMUST00000090811.11, ENSMUST00000112050.2
Found 136 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR GCA 90 bp | TGGGAGGAGCTGGAGAGATGGCTCAGGGGTAAGAGTGCTTGCTCTTaGACAGGATCTGGGTTTGGTCCCCAGCACCCACACGATGGCTCA | + |
Preference number: 1 (lower is better) Translates to: WEELERWLRGKSACS*TGSGFGPQHPHDGS Trigger: TGAGCCATCGTGTGGGTGCTGGGGACCAAACCCAGATCCTGTGCAAGAGCAAGCACTCTTACCCCTGAGCCATCTCTCCAGCTCCTCCCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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3UTR GCA 90 bp | GAGTGCTGGGAGGAGCTGGAGAGATGGCTCAGGGGTAAGAGTGCTTaGTCTTGCACAGGATCTGGGTTTGGTCCCCAGCACCCACACGAT | + |
Preference number: 1 (lower is better) Translates to: ECWEELERWLRGKSA*SCTGSGFGPQHPHD Trigger: ATCGTGTGGGTGCTGGGGACCAAACCCAGATCCTGTGCAAGAGCAAGCACTCTTACCCCTGAGCCATCTCTCCAGCTCCTCCCAGCACTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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3UTR TCA 90 bp | GGAGCAGTAAACCACAGGGACCACGAGTCACCGTGGGTTGTCCTCTaGCCTTCACTTGAACACAGCGGTCTAATATGCCTCCCTCCACAT | + |
Preference number: 1 (lower is better) Translates to: GAVNHRDHESPWVVL*PSLEHSGLICLPPH Trigger: ATGTGGAGGGAGGCATATTAGACCGCTGTGTTCAAGTGAAGGTCAGAGGACAACCCACGGTGACTCGTGGTCCCTGTGGTTTACTGCTCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112050.2 |
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3UTR CCA 90 bp | TTGCTCTTGCACAGGATCTGGGTTTGGTCCCCAGCACCCACACGATaGCTCACAGCCATCTATAACTCCAGTTCAAGAGGATCTCACACC | + |
Preference number: 1 (lower is better) Translates to: LLLHRIWVWSPAPTR*LTAIYNSSSRGSHT Trigger: GGTGTGAGATCCTCTTGAACTGGAGTTATAGATGGCTGTGAGCCATCGTGTGGGTGCTGGGGACCAAACCCAGATCCTGTGCAAGAGCAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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3UTR TCA 90 bp | CCACAGGGACCACGAGTCACCGTGGGTTGTCCTCTGACCTTCACTTaGACACAGCGGTCTAATATGCCTCCCTCCACATATATACATGCA | + |
Preference number: 1 (lower is better) Translates to: PQGPRVTVGCPLTFT*TQRSNMPPSTYIHA Trigger: TGCATGTATATATGTGGAGGGAGGCATATTAGACCGCTGTGTTCAAGTGAAGGTCAGAGGACAACCCACGGTGACTCGTGGTCCCTGTGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112050.2 |
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3UTR CCA 90 bp | GCTCTTAAGAGGTTTAGACTTGAGTGCTGGGAGGAGCTGGAGAGATaGCTCAGGGGTAAGAGTGCTTGCTCTTGCACAGGATCTGGGTTT | + |
Preference number: 1 (lower is better) Translates to: ALKRFRLECWEELER*LRGKSACSCTGSGF Trigger: AAACCCAGATCCTGTGCAAGAGCAAGCACTCTTACCCCTGAGCCATCTCTCCAGCTCCTCCCAGCACTCAAGTCTAAACCTCTTAAGAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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3UTR CCA 90 bp | GCGGGATTACAGCTGTGTCCCACCCGTCTCCATTTTACACACTGCTaGGGATTCAACCAGGACTTGTGTGTGCCAGATAAGCAACAGCAA | + |
Preference number: 1 (lower is better) Translates to: AGLQLCPTRLHFTHC*GFNQDLCVPDKQQQ Trigger: TTGCTGTTGCTTATCTGGCACACACAAGTCCTGGTTGAATCCCCAGCAGTGTGTAAAATGGAGACGGGTGGGACACAGCTGTAATCCCGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112050.2 |
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3UTR CCA 90 bp | CATCTGACATGGGCTGAACGCTTAGAGCTAGCAGCAACTCACACGTaGATGCTTACTCACAATTGCCAAAATCTGGAAGCAGCCAAGAGG | + |
Preference number: 1 (lower is better) Translates to: HLTWAERLELAATHT*MLTHNCQNLEAAKR Trigger: CCTCTTGGCTGCTTCCAGATTTTGGCAATTGTGAGTAAGCATCCACGTGTGAGTTGCTGCTAGCTCTAAGCGTTCAGCCCATGTCAGATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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3UTR CCA 90 bp | AACAATGAGCTCTTAAGAGGTTTAGACTTGAGTGCTGGGAGGAGCTaGAGAGATGGCTCAGGGGTAAGAGTGCTTGCTCTTGCACAGGAT | + |
Preference number: 1 (lower is better) Translates to: NNELLRGLDLSAGRS*RDGSGVRVLALAQD Trigger: ATCCTGTGCAAGAGCAAGCACTCTTACCCCTGAGCCATCTCTCCAGCTCCTCCCAGCACTCAAGTCTAAACCTCTTAAGAGCTCATTGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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3UTR TCA 90 bp | CTCACAGCCATCTATAACTCCAGTTCAAGAGGATCTCACACCCTCTaGGGGCACCAGGCATGTGCTTCATACAGATATACATGGAGGCAA | + |
Preference number: 1 (lower is better) Translates to: LTAIYNSSSRGSHTL*GHQACASYRYTWRQ Trigger: TTGCCTCCATGTATATCTGTATGAAGCACATGCCTGGTGCCCTCAGAGGGTGTGAGATCCTCTTGAACTGGAGTTATAGATGGCTGTGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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3UTR TCA 90 bp | ACAGCATTTCTAAAGCCGATGGAAATAACTGGCAGTGCCCTATTTTaGAAGGTAACGGTGAAATCTTCCAGCACAGGCTCCCGTGACGTC | + |
Preference number: 1 (lower is better) Translates to: TAFLKPMEITGSALF*KVTVKSSSTGSRDV Trigger: GACGTCACGGGAGCCTGTGCTGGAAGATTTCACCGTTACCTTTCAAAATAGGGCACTGCCAGTTATTTCCATCGGCTTTAGAAATGCTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112050.2 |
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3UTR TCA 90 bp | AAAGGAGCTATCATGGCTTACAGAGGCATGGTGAAAGCTGTGTATTaGAGAAGCCAATCCCAAAAGACCTACTGGAAGATCCAAATACCT | + |
Preference number: 1 (lower is better) Translates to: KGAIMAYRGMVKAVY*RSQSQKTYWKIQIP Trigger: AGGTATTTGGATCTTCCAGTAGGTCTTTTGGGATTGGCTTCTTCAATACACAGCTTTCACCATGCCTCTGTAAGCCATGATAGCTCCTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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3UTR GCA 90 bp | TCTGCAGACTGTGTGGCAATGTCAAACAGCGTAAATCTAGACCTCTaGCTTGTTAAAGCTGGTTACTATTTGCCTAAAGCACAAACAATG | + |
Preference number: 1 (lower is better) Translates to: SADCVAMSNSVNLDL*LVKAGYYLPKAQTM Trigger: CATTGTTTGTGCTTTAGGCAAATAGTAACCAGCTTTAACAAGGCAGAGGTCTAGATTTACGCTGTTTGACATTGCCACACAGTCTGCAGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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3UTR TCA 90 bp | AACCTGAGTATCCACACTGAGTATCCCACAATGAGTATCCTGCAGTaGAAATCTCTACAAGTTAACTCACATATCCATATAATCCTTGTA | + |
Preference number: 1 (lower is better) Translates to: NLSIHTEYPTMSILQ*KSLQVNSHIHIILV Trigger: TACAAGGATTATATGGATATGTGAGTTAACTTGTAGAGATTTTCACTGCAGGATACTCATTGTGGGATACTCAGTGTGGATACTCAGGTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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3UTR CAA 90 bp | AAGGTAACGGTGAAATCTTCCAGCACAGGCTCCCGTGACGTCCTTTaGCCCCCAGAAGCTCACAATGGTTTTCCTTCCTCTGATGTTCAC | + |
Preference number: 2 (lower is better) Translates to: KVTVKSSSTGSRDVL*PPEAHNGFPSSDVH Trigger: GTGAACATCAGAGGAAGGAAAACCATTGTGAGCTTCTGGGGGCAAAAGGACGTCACGGGAGCCTGTGCTGGAAGATTTCACCGTTACCTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000112050.2 |
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3UTR-3UTR CCA 90 bp | CAGTTCAAGAGGATCTCACACCCTCTGAGGGCACCAGGCATGTGCTTCATACAGAGGAGACAACGGTGGTaGTTTCTCACTCACACAACA | + |
Preference number: 2 (lower is better) Translates to: QFKRISHPLRAPGMCFIQRRQRW*FLTHTT Trigger: TGTTGTGTGAGTGAGAAACCACCACCGTTGTCTCCT...CTGTATGAAGCACATGCCTGGTGCCCTCAGAGGGTGTGAGATCCTCTTGAACTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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3UTR-3UTR GCA 90 bp | TCACAGCCATCTATAACTCCAGTTCAAGAGGATCTCACACCCTCTGAGGGCACCTTAGAGCCACAAGTTTaGTTGCTGCTCAGCCAAATC | + |
Preference number: 2 (lower is better) Translates to: SQPSITPVQEDLTPSEGTLEPQV*LLLSQI Trigger: GATTTGGCTGAGCAGCAAGCAAACTTGTGGCTCTAA...GGTGCCCTCAGAGGGTGTGAGATCCTCTTGAACTGGAGTTATAGATGGCTGTGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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3UTR-3UTR CCA 90 bp | AGGATCTCACACCCTCTGAGGGCACCAGGCATGTGCTTCATACAGATATACATGGCAGCAACTCACACGTaGATGCTTACTCACAATTGC | + |
Preference number: 2 (lower is better) Translates to: RISHPLRAPGMCFIQIYMAATHT*MLTHNC Trigger: GCAATTGTGAGTAAGCATCCACGTGTGAGTTGCTGC...CATGTATATCTGTATGAAGCACATGCCTGGTGCCCTCAGAGGGTGTGAGATCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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3UTR-3UTR TCA 90 bp | GATGGCTCACAGCCATCTATAACTCCAGTTCAAGAGGATCTCACACCCTCTGAGGTGAAAGCTGTGTATTaGAGAAGCCAATCCCAAAAG | + |
Preference number: 2 (lower is better) Translates to: DGSQPSITPVQEDLTPSEVKAVY*RSQSQK Trigger: CTTTTGGGATTGGCTTCTTCAATACACAGCTTTCAC...CTCAGAGGGTGTGAGATCCTCTTGAACTGGAGTTATAGATGGCTGTGAGCCATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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3UTR-3UTR TCA 90 bp | TCACAGCCATCTATAACTCCAGTTCAAGAGGATCTCACACCCTCTGAGGGCACCCACAAACAATGCACTTaGCATATTTTCCACTGCTTA | + |
Preference number: 2 (lower is better) Translates to: SQPSITPVQEDLTPSEGTHKQCT*HIFHCL Trigger: TAAGCAGTGGAAAATATGTCAAGTGCATTGTTTGTG...GGTGCCCTCAGAGGGTGTGAGATCCTCTTGAACTGGAGTTATAGATGGCTGTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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3UTR-3UTR GCA 90 bp | GATGGCTCACAGCCATCTATAACTCCAGTTCAAGAGGATCTCACACCCTCTGAGGTAAATCTAGACCTCTaGCTTGTTAAAGCTGGTTAC | + |
Preference number: 2 (lower is better) Translates to: DGSQPSITPVQEDLTPSEVNLDL*LVKAGY Trigger: GTAACCAGCTTTAACAAGGCAGAGGTCTAGATTTAC...CTCAGAGGGTGTGAGATCCTCTTGAACTGGAGTTATAGATGGCTGTGAGCCATC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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3UTR-3UTR CCA 90 bp | ATATACTCCAAGGCATTAACTACCAACCTGAGTATCCACACTGAGTATCCCACATTTAGACTTGAGTGCTaGGAGGAGCTGGAGAGATGG | + |
Preference number: 2 (lower is better) Translates to: IYSKALTTNLSIHTEYPTFRLEC*EELERW Trigger: CCATCTCTCCAGCTCCTCCCAGCACTCAAGTCTAAA...TGTGGGATACTCAGTGTGGATACTCAGGTTGGTAGTTAATGCCTTGGAGTATAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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3UTR CAA 90 bp | GAAAGGAGCTATCATGGCTTACAGAGGCATGGTGAAAGCTGTGTATaGAAGAAGCCAATCCCAAAAGACCTACTGGAAGATCCAAATACC | + |
Preference number: 2 (lower is better) Translates to: ERSYHGLQRHGESCV*KKPIPKDLLEDPNT Trigger: GGTATTTGGATCTTCCAGTAGGTCTTTTGGGATTGGCTTCTTCAATACACAGCTTTCACCATGCCTCTGTAAGCCATGATAGCTCCTTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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3UTR-3UTR TCA 90 bp | CATGGCCAAGATCTACACACCTCAGCAAAGAAGGTATACAAATGGGAAATAAGCCTTACAGAGGCATGGTaGAAGCTGTGTATTGAAGAA | + |
Preference number: 2 (lower is better) Translates to: HGQDLHTSAKKVYKWEISLTEAW*KLCIEE Trigger: TTCTTCAATACACAGCTTTCACCATGCCTCTGTAAG...GCTTATTTCCCATTTGTATACCTTCTTTGCTGAGGTGTGTAGATCTTGGCCATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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3UTR-3UTR CCA 90 bp | CATGGCCAAGATCTACACACCTCAGCAAAGAAGGTATACAAATGGGAAATAAGCACAATTGCCAAAATCTaGAAGCAGCCAAGAGGCTTT | + |
Preference number: 2 (lower is better) Translates to: HGQDLHTSAKKVYKWEISTIAKI*KQPRGF Trigger: AAAGCCTCTTGGCTGCTTCCAGATTTTGGCAATTGT...GCTTATTTCCCATTTGTATACCTTCTTTGCTGAGGTGTGTAGATCTTGGCCATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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3UTR-3UTR CCA 90 bp | CTAGGAGATTCAAGATGTCGGTTCACAAGAAGCGTGAGATTATGTTTCCACACCCACAAACAAATCACCTaGAGAAATCAATTCCAAAGC | + |
Preference number: 2 (lower is better) Translates to: LGDSRCRFTRSVRLCFHTHKQIT*RNQFQS Trigger: GCTTTGGAATTGATTTCTCCAGGTGATTTGTTTGTG...GGTGTGGAAACATAATCTCACGCTTCTTGTGAACCGACATCTTGAATCTCCTAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112050.2 |
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3UTR-3UTR TCA 90 bp | ATATACTCCAAGGCATTAACTACCAACCTGAGTATCCACACTGAGTATCCCACATACCACCTAATACTATaGGGAAATAATCAGATCTCC | + |
Preference number: 2 (lower is better) Translates to: IYSKALTTNLSIHTEYPTYHLIL*GNNQIS Trigger: GGAGATCTGATTATTTCCTCATAGTATTAGGTGGTA...TGTGGGATACTCAGTGTGGATACTCAGGTTGGTAGTTAATGCCTTGGAGTATAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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3UTR-3UTR CCA 90 bp | CATGGCCAAGATCTACACACCTCAGCAAAGAAGGTATACAAATGGGAAATAAGCAAATACCTGGCATTCTaGGAAAAGAAAATCTACCCA | + |
Preference number: 2 (lower is better) Translates to: HGQDLHTSAKKVYKWEISKYLAF*EKKIYP Trigger: TGGGTAGATTTTCTTTTCCCAGAATGCCAGGTATTT...GCTTATTTCCCATTTGTATACCTTCTTTGCTGAGGTGTGTAGATCTTGGCCATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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3UTR CAA 90 bp | AACAGCGTAAATCTAGACCTCTGCCTTGTTAAAGCTGGTTACTATTaGCCTAAAGCACAAACAATGCACTTGACATATTTTCCACTGCTT | + |
Preference number: 2 (lower is better) Translates to: NSVNLDLCLVKAGYY*PKAQTMHLTYFPLL Trigger: AAGCAGTGGAAAATATGTCAAGTGCATTGTTTGTGCTTTAGGCAAATAGTAACCAGCTTTAACAAGGCAGAGGTCTAGATTTACGCTGTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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3UTR-3UTR GCA 90 bp | AATCCCAAAAGACCTACTGGAAGATCCAAATACCTGGCATTCTGGGAAAAGAAAAAGCTGGTTACTATTTaGCTAAAGCACAAACAATGC | + |
Preference number: 2 (lower is better) Translates to: NPKRPTGRSKYLAFWEKKKLVTI*LKHKQC Trigger: GCATTGTTTGTGCTTTAGGCAAATAGTAACCAGCTT...TTTCTTTTCCCAGAATGCCAGGTATTTGGATCTTCCAGTAGGTCTTTTGGGATT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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3UTR CAA 90 bp | CTTGTTAAAGCTGGTTACTATTTGCCTAAAGCACAAACAATGCACTaGACATATTTTCCACTGCTTAAGGAAAAGAAAGCCTTGAGCTTT | + |
Preference number: 2 (lower is better) Translates to: LVKAGYYLPKAQTMH*TYFPLLKEKKALSF Trigger: AAAGCTCAAGGCTTTCTTTTCCTTAAGCAGTGGAAAATATGTCAAGTGCATTGTTTGTGCTTTAGGCAAATAGTAACCAGCTTTAACAAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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3UTR GCA 72 bp | CTGGAGAGATGGCTCAGGGGTAAGAGTGCTTGCTCTTaGACAGGATCTGGGTTTGGTCCCCAGCACCCACAC | + |
Preference number: 3 (lower is better) Translates to: LERWLRGKSACS*TGSGFGPQHPH Trigger: GTGTGGGTGCTGGGGACCAAACCCAGATCCTGTGCAAGAGCAAGCACTCTTACCCCTGAGCCATCTCTCCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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3UTR GCA 72 bp | GAGGAGCTGGAGAGATGGCTCAGGGGTAAGAGTGCTTaGTCTTGCACAGGATCTGGGTTTGGTCCCCAGCAC | + |
Preference number: 3 (lower is better) Translates to: EELERWLRGKSA*SCTGSGFGPQH Trigger: GTGCTGGGGACCAAACCCAGATCCTGTGCAAGAGCAAGCACTCTTACCCCTGAGCCATCTCTCCAGCTCCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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3UTR CCA 72 bp | GATAAGGTCAGGGATGACGGTGGTGTCTACAGTCCCTaGACTTCTGTGGTGAGACGGAAGGCGATGGGAGAA | + |
Preference number: 3 (lower is better) Translates to: DKVRDDGGVYSP*TSVVRRKAMGE Trigger: TTCTCCCATCGCCTTCCGTCTCACCACAGAAGTCCAGGGACTGTAGACACCACCGTCATCCCTGACCTTATC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112050.2 |
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3UTR TCA 72 bp | AACCACAGGGACCACGAGTCACCGTGGGTTGTCCTCTaGCCTTCACTTGAACACAGCGGTCTAATATGCCTC | + |
Preference number: 3 (lower is better) Translates to: NHRDHESPWVVL*PSLEHSGLICL Trigger: GAGGCATATTAGACCGCTGTGTTCAAGTGAAGGTCAGAGGACAACCCACGGTGACTCGTGGTCCCTGTGGTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112050.2 |
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3UTR TCA 72 bp | ATGACGGTGGTGTCTACAGTCCCTGGACTTCTGTGGTaGGACGGAAGGCGATGGGAGAAAATCCCCAGAAGT | + |
Preference number: 3 (lower is better) Translates to: MTVVSTVPGLLW*DGRRWEKIPRS Trigger: ACTTCTGGGGATTTTCTCCCATCGCCTTCCGTCTCACCACAGAAGTCCAGGGACTGTAGACACCACCGTCAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000112050.2 |
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3UTR CCA 72 bp | CACAGGATCTGGGTTTGGTCCCCAGCACCCACACGATaGCTCACAGCCATCTATAACTCCAGTTCAAGAGGA | + |
Preference number: 3 (lower is better) Translates to: HRIWVWSPAPTR*LTAIYNSSSRG Trigger: TCCTCTTGAACTGGAGTTATAGATGGCTGTGAGCCATCGTGTGGGTGCTGGGGACCAAACCCAGATCCTGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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3UTR TCA 72 bp | CCACGAGTCACCGTGGGTTGTCCTCTGACCTTCACTTaGACACAGCGGTCTAATATGCCTCCCTCCACATAT | + |
Preference number: 3 (lower is better) Translates to: PRVTVGCPLTFT*TQRSNMPPSTY Trigger: ATATGTGGAGGGAGGCATATTAGACCGCTGTGTTCAAGTGAAGGTCAGAGGACAACCCACGGTGACTCGTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112050.2 |
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3UTR TCA 72 bp | AAAGGTAACGGTGAAATCTTCCAGCACAGGCTCCCGTaGCGTCCTTTTGCCCCCAGAAGCTCACAATGGTTT | + |
Preference number: 3 (lower is better) Translates to: KGNGEIFQHRLP*RPFAPRSSQWF Trigger: AAACCATTGTGAGCTTCTGGGGGCAAAAGGACGTCACGGGAGCCTGTGCTGGAAGATTTCACCGTTACCTTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000112050.2 |
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3UTR-3UTR CAA 90 bp | AGGATCTCACACCCTCTGAGGGCACCAGGCATGTGCTTCATACAGATATACATGCTGCTCAGCCAAATCTaGACAGAGGTCACTTTTGAG | + |
Preference number: 3 (lower is better) Translates to: RISHPLRAPGMCFIQIYMLLSQI*TEVTFE Trigger: CTCAAAAGTGACCTCTGTCAAGATTTGGCTGAGCAG...CATGTATATCTGTATGAAGCACATGCCTGGTGCCCTCAGAGGGTGTGAGATCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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3UTR GCA 72 bp | AAGAGGATCTCACACCCTCTGAGGGCACCAGGCATGTaGTTCATACAGATATACATGGAGGCAAAACACTCA | + |
Preference number: 3 (lower is better) Translates to: KRISHPLRAPGM*FIQIYMEAKHS Trigger: TGAGTGTTTTGCCTCCATGTATATCTGTATGAAGCACATGCCTGGTGCCCTCAGAGGGTGTGAGATCCTCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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3UTR CCA 72 bp | CTCACACGTGGATGCTTACTCACAATTGCCAAAATCTaGAAGCAGCCAAGAGGCTTTCTGGTAGTGACACAC | + |
Preference number: 3 (lower is better) Translates to: LTRGCLLTIAKI*KQPRGFLVVTH Trigger: GTGTGTCACTACCAGAAAGCCTCTTGGCTGCTTCCAGATTTTGGCAATTGTGAGTAAGCATCCACGTGTGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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3UTR CCA 72 bp | TGGGCTGAACGCTTAGAGCTAGCAGCAACTCACACGTaGATGCTTACTCACAATTGCCAAAATCTGGAAGCA | + |
Preference number: 3 (lower is better) Translates to: WAERLELAATHT*MLTHNCQNLEA Trigger: TGCTTCCAGATTTTGGCAATTGTGAGTAAGCATCCACGTGTGAGTTGCTGCTAGCTCTAAGCGTTCAGCCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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3UTR-3UTR CAA 90 bp | CAGTTCAAGAGGATCTCACACCCTCTGAGGGCACCAGGCATGTGCTTCATACAGGCACAAACAATGCACTaGACATATTTTCCACTGCTT | + |
Preference number: 3 (lower is better) Translates to: QFKRISHPLRAPGMCFIQAQTMH*TYFPLL Trigger: AAGCAGTGGAAAATATGTCAAGTGCATTGTTTGTGC...CTGTATGAAGCACATGCCTGGTGCCCTCAGAGGGTGTGAGATCCTCTTGAACTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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3UTR TCA 72 bp | CTAAAGCCGATGGAAATAACTGGCAGTGCCCTATTTTaGAAGGTAACGGTGAAATCTTCCAGCACAGGCTCC | + |
Preference number: 3 (lower is better) Translates to: LKPMEITGSALF*KVTVKSSSTGS Trigger: GGAGCCTGTGCTGGAAGATTTCACCGTTACCTTTCAAAATAGGGCACTGCCAGTTATTTCCATCGGCTTTAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112050.2 |
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3UTR-3UTR CAA 90 bp | ATATACTCCAAGGCATTAACTACCAACCTGAGTATCCACACTGAGTATCCCACAGAGCCACAAGTTTGCTaGCTGCTCAGCCAAATCTTG | + |
Preference number: 3 (lower is better) Translates to: IYSKALTTNLSIHTEYPTEPQVC*LLSQIL Trigger: CAAGATTTGGCTGAGCAGCAAGCAAACTTGTGGCTC...TGTGGGATACTCAGTGTGGATACTCAGGTTGGTAGTTAATGCCTTGGAGTATAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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3UTR TCA 72 bp | ATCTATAACTCCAGTTCAAGAGGATCTCACACCCTCTaGGGGCACCAGGCATGTGCTTCATACAGATATACA | + |
Preference number: 3 (lower is better) Translates to: IYNSSSRGSHTL*GHQACASYRYT Trigger: TGTATATCTGTATGAAGCACATGCCTGGTGCCCTCAGAGGGTGTGAGATCCTCTTGAACTGGAGTTATAGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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3UTR GCA 72 bp | GGGAGAGAAAAAGCCAAACAATTAGAGCCACAAGTTTaGTTGCTGCTCAGCCAAATCTTGACAGAGGTCACT | + |
Preference number: 3 (lower is better) Translates to: GREKAKQLEPQV*LLLSQILTEVT Trigger: AGTGACCTCTGTCAAGATTTGGCTGAGCAGCAAGCAAACTTGTGGCTCTAATTGTTTGGCTTTTTCTCTCCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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3UTR TCA 72 bp | ATCATGGCTTACAGAGGCATGGTGAAAGCTGTGTATTaGAGAAGCCAATCCCAAAAGACCTACTGGAAGATC | + |
Preference number: 3 (lower is better) Translates to: IMAYRGMVKAVY*RSQSQKTYWKI Trigger: GATCTTCCAGTAGGTCTTTTGGGATTGGCTTCTTCAATACACAGCTTTCACCATGCCTCTGTAAGCCATGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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3UTR GCA 72 bp | TGTGTGGCAATGTCAAACAGCGTAAATCTAGACCTCTaGCTTGTTAAAGCTGGTTACTATTTGCCTAAAGCA | + |
Preference number: 3 (lower is better) Translates to: CVAMSNSVNLDL*LVKAGYYLPKA Trigger: TGCTTTAGGCAAATAGTAACCAGCTTTAACAAGGCAGAGGTCTAGATTTACGCTGTTTGACATTGCCACACA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
||
3UTR GCA 72 bp | AACAGCATTTCTAAAGCCGATGGAAATAACTGGCAGTaGCCTATTTTGAAAGGTAACGGTGAAATCTTCCAG | + |
Preference number: 3 (lower is better) Translates to: NSISKADGNNWQ*PILKGNGEIFQ Trigger: CTGGAAGATTTCACCGTTACCTTTCAAAATAGGGCACTGCCAGTTATTTCCATCGGCTTTAGAAATGCTGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112050.2 |
||
3UTR-3UTR CAA 90 bp | AATCCCAAAAGACCTACTGGAAGATCCAAATACCTGGCATTCTGGGAAAAGAAAAAAGCTGGTTACTATTaGCCTAAAGCACAAACAATG | + |
Preference number: 3 (lower is better) Translates to: NPKRPTGRSKYLAFWEKKKAGYY*PKAQTM Trigger: CATTGTTTGTGCTTTAGGCAAATAGTAACCAGCTTT...TTTCTTTTCCCAGAATGCCAGGTATTTGGATCTTCCAGTAGGTCTTTTGGGATT 39% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
||
3UTR TCA 72 bp | CTGGTTACTATTTGCCTAAAGCACAAACAATGCACTTaGCATATTTTCCACTGCTTAAGGAAAAGAAAGCCT | + |
Preference number: 3 (lower is better) Translates to: LVTICLKHKQCT*HIFHCLRKRKP Trigger: AGGCTTTCTTTTCCTTAAGCAGTGGAAAATATGTCAAGTGCATTGTTTGTGCTTTAGGCAAATAGTAACCAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
||
3UTR TCA 72 bp | ATCCACACTGAGTATCCCACAATGAGTATCCTGCAGTaGAAATCTCTACAAGTTAACTCACATATCCATATA | + |
Preference number: 3 (lower is better) Translates to: IHTEYPTMSILQ*KSLQVNSHIHI Trigger: TATATGGATATGTGAGTTAACTTGTAGAGATTTTCACTGCAGGATACTCATTGTGGGATACTCAGTGTGGAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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3UTR CCA 72 bp | GAAATTAGAGGAATGTATGGCCACAAACAAATCACCTaGAGAAATCAATTCCAAAGCAATCAAACTGCAATC | + |
Preference number: 3 (lower is better) Translates to: EIRGMYGHKQIT*RNQFQSNQTAI Trigger: GATTGCAGTTTGATTGCTTTGGAATTGATTTCTCCAGGTGATTTGTTTGTGGCCATACATTCCTCTAATTTC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112050.2 |
||
CDS-3UTR CCA 90 bp | TCCCTACCTCTCTCCCTCCCAGATGGCGGGATTACAGCTGTGTCCCACCCGTCTCCCCCACAGCCAAGCTaGGCGACTAAGGACAACAGC | + |
Preference number: 4 (lower is better) Translates to: SLPLSLPDGGITAVSHPSPPQPS*ATKDNS Trigger: GCTGTTGTCCTTAGTCGCCCAGCTTGGCTGTGGGGG...AGACGGGTGGGACACAGCTGTAATCCCGCCATCTGGGAGGGAGAGAGGTAGGGA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000112050.2 |
||
CDS-3UTR GCA 90 bp | CCCCAGGACGTAGATAAGGTCAGGGATGACGGTGGTGTCTACAGTCCCTGGACTACCTTGGACTCTCTCTaGTGCCCAGTACTTCCCCGA | + |
Preference number: 4 (lower is better) Translates to: PQDVDKVRDDGGVYSPWTTLDSL*CPVLPR Trigger: TCGGGGAAGTACTGGGCAGCAGAGAGAGTCCAAGGT...AGTCCAGGGACTGTAGACACCACCGTCATCCCTGACCTTATCTACGTCCTGGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000112050.2 |
||
CDS-3UTR GCA 90 bp | TCCCTACCTCTCTCCCTCCCAGATGGCGGGATTACAGCTGTGTCCCACCCGTCTGTCCATGCCCAAAAGTaGTTCCTCCTTAGAAATGTC | + |
Preference number: 4 (lower is better) Translates to: SLPLSLPDGGITAVSHPSVHAQK*FLLRNV Trigger: GACATTTCTAAGGAGGAAGCACTTTTGGGCATGGAC...AGACGGGTGGGACACAGCTGTAATCCCGCCATCTGGGAGGGAGAGAGGTAGGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112050.2 |
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CDS-3UTR CCA 90 bp | GATGGCTCACAGCCATCTATAACTCCAGTTCAAGAGGATCTCACACCCTCTGAGCCCCCACAGCCAAGCTaGGCGACTAAGGACAACAGC | + |
Preference number: 4 (lower is better) Translates to: DGSQPSITPVQEDLTPSEPPQPS*ATKDNS Trigger: GCTGTTGTCCTTAGTCGCCCAGCTTGGCTGTGGGGG...CTCAGAGGGTGTGAGATCCTCTTGAACTGGAGTTATAGATGGCTGTGAGCCATC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
||
CDS-3UTR TCA 90 bp | TCACAGCCATCTATAACTCCAGTTCAAGAGGATCTCACACCCTCTGAGGGCACCTCTCAAGGCCCAGCCTaGCAAGGTCCATGCCCAAAA | + |
Preference number: 4 (lower is better) Translates to: SQPSITPVQEDLTPSEGTSQGPA*QGPCPK Trigger: TTTTGGGCATGGACCTTGTCAGGCTGGGCCTTGAGA...GGTGCCCTCAGAGGGTGTGAGATCCTCTTGAACTGGAGTTATAGATGGCTGTGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
||
CDS-3UTR TCA 90 bp | TGGGTTTGGTCCCCAGCACCCACACGATGGCTCACAGCCATCTATAACTCCAGTGTTGCAGTAAAGAGGTaGATGCAAGGAAGGCTGGGA | + |
Preference number: 4 (lower is better) Translates to: WVWSPAPTRWLTAIYNSSVAVKR*MQGRLG Trigger: TCCCAGCCTTCCTTGCATTCACCTCTTTACTGCAAC...ACTGGAGTTATAGATGGCTGTGAGCCATCGTGTGGGTGCTGGGGACCAAACCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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CDS-3UTR CCA 90 bp | TGGGTTTGGTCCCCAGCACCCACACGATGGCTCACAGCCATCTATAACTCCAGTATATTACGAACGCCTTaGACTCTCTCTGCTGCCCAG | + |
Preference number: 4 (lower is better) Translates to: WVWSPAPTRWLTAIYNSSILRTP*TLSAAQ Trigger: CTGGGCAGCAGAGAGAGTCCAAGGCGTTCGTAATAT...ACTGGAGTTATAGATGGCTGTGAGCCATCGTGTGGGTGCTGGGGACCAAACCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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3UTR CAA 72 bp | GTGAAATCTTCCAGCACAGGCTCCCGTGACGTCCTTTaGCCCCCAGAAGCTCACAATGGTTTTCCTTCCTCT | + |
Preference number: 4 (lower is better) Translates to: VKSSSTGSRDVL*PPEAHNGFPSS Trigger: AGAGGAAGGAAAACCATTGTGAGCTTCTGGGGGCAAAAGGACGTCACGGGAGCCTGTGCTGGAAGATTTCAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000112050.2 |
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CDS-3UTR GCA 90 bp | GGCTCACAGCCATCTATAACTCCAGTTCAAGAGGATCTCACACCCTCTGAGGGCAACAGAAACCATGCTTaGCGTGGTCAGGAATTCTCC | + |
Preference number: 4 (lower is better) Translates to: GSQPSITPVQEDLTPSEGNRNHA*RGQEFS Trigger: GGAGAATTCCTGACCACGGCAAGCATGGTTTCTGTT...GCCCTCAGAGGGTGTGAGATCCTCTTGAACTGGAGTTATAGATGGCTGTGAGCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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CDS-3UTR GCA 90 bp | CAGTTCAAGAGGATCTCACACCCTCTGAGGGCACCAGGCATGTGCTTCATACAGGACATATGGCTTCTTTaGCACTGGCCTTTCAGGTTC | + |
Preference number: 4 (lower is better) Translates to: QFKRISHPLRAPGMCFIQDIWLL*HWPFRF Trigger: GAACCTGAAAGGCCAGTGGCAAAGAAGCCATATGTC...CTGTATGAAGCACATGCCTGGTGCCCTCAGAGGGTGTGAGATCCTCTTGAACTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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CDS-3UTR CCA 90 bp | TGGGTTTGGTCCCCAGCACCCACACGATGGCTCACAGCCATCTATAACTCCAGTGTAGTTCCTCATGTCTaGATGTTCCCGGTCAATCTT | + |
Preference number: 4 (lower is better) Translates to: WVWSPAPTRWLTAIYNSSVVPHV*MFPVNL Trigger: AAGATTGACCGGGAACATCCAGACATGAGGAACTAC...ACTGGAGTTATAGATGGCTGTGAGCCATCGTGTGGGTGCTGGGGACCAAACCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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CDS-3UTR TCA 90 bp | TCACAGCCATCTATAACTCCAGTTCAAGAGGATCTCACACCCTCTGAGGGCACCAACTGTTGTAATAGCTaGACTCTTTGCCCTCTGCGC | + |
Preference number: 4 (lower is better) Translates to: SQPSITPVQEDLTPSEGTNCCNS*TLCPLR Trigger: GCGCAGAGGGCAAAGAGTTCAGCTATTACAACAGTT...GGTGCCCTCAGAGGGTGTGAGATCCTCTTGAACTGGAGTTATAGATGGCTGTGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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CDS-3UTR GCA 90 bp | AGGATCTCACACCCTCTGAGGGCACCAGGCATGTGCTTCATACAGATATACATGCAGCCTCATTCCCAATaGAGACTCCATGCTCATTGG | + |
Preference number: 4 (lower is better) Translates to: RISHPLRAPGMCFIQIYMQPHSQ*RLHAHW Trigger: CCAATGAGCATGGAGTCTGCATTGGGAATGAGGCTG...CATGTATATCTGTATGAAGCACATGCCTGGTGCCCTCAGAGGGTGTGAGATCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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CDS-3UTR GCA 90 bp | CAGTTCAAGAGGATCTCACACCCTCTGAGGGCACCAGGCATGTGCTTCATACAGGTCCATGCCCAAAAGTaGTTCCTCCTTAGAAATGTC | + |
Preference number: 4 (lower is better) Translates to: QFKRISHPLRAPGMCFIQVHAQK*FLLRNV Trigger: GACATTTCTAAGGAGGAAGCACTTTTGGGCATGGAC...CTGTATGAAGCACATGCCTGGTGCCCTCAGAGGGTGTGAGATCCTCTTGAACTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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CDS-3UTR CCA 90 bp | CAGTTCAAGAGGATCTCACACCCTCTGAGGGCACCAGGCATGTGCTTCATACAGGCGCAGTTTCCACCTTaGCCATACTTTTCTAGTAAG | + |
Preference number: 4 (lower is better) Translates to: QFKRISHPLRAPGMCFIQAQFPP*PYFSSK Trigger: CTTACTAGAAAAGTATGGCCAAGGTGGAAACTGCGC...CTGTATGAAGCACATGCCTGGTGCCCTCAGAGGGTGTGAGATCCTCTTGAACTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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CDS-3UTR CCA 90 bp | TGGGTTTGGTCCCCAGCACCCACACGATGGCTCACAGCCATCTATAACTCCAGTGTTCCCGGTCAATCTTaGTTGTTATGGAAAGCTGAT | + |
Preference number: 4 (lower is better) Translates to: WVWSPAPTRWLTAIYNSSVPGQS*LLWKAD Trigger: ATCAGCTTTCCATAACAACCAAGATTGACCGGGAAC...ACTGGAGTTATAGATGGCTGTGAGCCATCGTGTGGGTGCTGGGGACCAAACCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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3UTR CAA 72 bp | GCTAGCAGCAACTCACACGTGGATGCTTACTCACAATaGCCAAAATCTGGAAGCAGCCAAGAGGCTTTCTGG | + |
Preference number: 4 (lower is better) Translates to: ASSNSHVDAYSQ*PKSGSSQEAFW Trigger: CCAGAAAGCCTCTTGGCTGCTTCCAGATTTTGGCAATTGTGAGTAAGCATCCACGTGTGAGTTGCTGCTAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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CDS-3UTR TCA 90 bp | CAGTTCAAGAGGATCTCACACCCTCTGAGGGCACCAGGCATGTGCTTCATACAGTCCACTCTGGAGGATTaGTTCTATCTCTTCAGATAC | + |
Preference number: 4 (lower is better) Translates to: QFKRISHPLRAPGMCFIQSTLED*FYLFRY Trigger: GTATCTGAAGAGATAGAATCAATCCTCCAGAGTGGA...CTGTATGAAGCACATGCCTGGTGCCCTCAGAGGGTGTGAGATCCTCTTGAACTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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CDS-3UTR GCA 90 bp | GTTTTCCTTCCTCTGATGTTCACAGTGCCCCTGGGTCCACATCATTCATCGTTCCCAATGCAGACTCCATaGTCATTGGCACCCATTTCT | + |
Preference number: 4 (lower is better) Translates to: VFLPLMFTVPLGPHHSSFPMQTP*SLAPIS Trigger: AGAAATGGGTGCCAATGAGCATGGAGTCTGCATTGG...GAACGATGAATGATGTGGACCCAGGGGCACTGTGAACATCAGAGGAAGGAAAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000112050.2 |
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CDS-3UTR GCA 90 bp | GGCTCACAGCCATCTATAACTCCAGTTCAAGAGGATCTCACACCCTCTGAGGGCGTAAAACAGAAACCATaGTTGCCGTGGTCAGGAATT | + |
Preference number: 4 (lower is better) Translates to: GSQPSITPVQEDLTPSEGVKQKP*LPWSGI Trigger: AATTCCTGACCACGGCAAGCATGGTTTCTGTTTTAC...GCCCTCAGAGGGTGTGAGATCCTCTTGAACTGGAGTTATAGATGGCTGTGAGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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CDS-3UTR CCA 90 bp | AGGATCTCACACCCTCTGAGGGCACCAGGCATGTGCTTCATACAGATATACATGAAACCATGCTTGCCGTaGTCAGGAATTCTCCCTTCA | + |
Preference number: 4 (lower is better) Translates to: RISHPLRAPGMCFIQIYMKPCLP*SGILPS Trigger: TGAAGGGAGAATTCCTGACCACGGCAAGCATGGTTT...CATGTATATCTGTATGAAGCACATGCCTGGTGCCCTCAGAGGGTGTGAGATCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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CDS-3UTR TCA 90 bp | CCTCCGCTAGGATGTTTACAGACATCCCTTATCTCCTTTGTAAAACTAGGAGATTCTCAAGGCCCAGCCTaGCAAGGTCCATGCCCAAAA | + |
Preference number: 4 (lower is better) Translates to: PPLGCLQTSLISFVKLGDSQGPA*QGPCPK Trigger: TTTTGGGCATGGACCTTGTCAGGCTGGGCCTTGAGA...ATCTCCTAGTTTTACAAAGGAGATAAGGGATGTCTGTAAACATCCTAGCGGAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112050.2 |
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CDS-3UTR TCA 90 bp | GGCTCACAGCCATCTATAACTCCAGTTCAAGAGGATCTCACACCCTCTGAGGGCAGGTTCAAATGTTGGTaGTTTTGTATCCAACAGTGG | + |
Preference number: 4 (lower is better) Translates to: GSQPSITPVQEDLTPSEGRFKCW*FCIQQW Trigger: CCACTGTTGGATACAAAATCACCAACATTTGAACCT...GCCCTCAGAGGGTGTGAGATCCTCTTGAACTGGAGTTATAGATGGCTGTGAGCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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CDS-3UTR GCA 90 bp | AATCCCAAAAGACCTACTGGAAGATCCAAATACCTGGCATTCTGGGAAAAGAAAGCCTTGGACTCTCTCTaGTGCCCAGTACTTCCCCGA | + |
Preference number: 4 (lower is better) Translates to: NPKRPTGRSKYLAFWEKKALDSL*CPVLPR Trigger: TCGGGGAAGTACTGGGCAGCAGAGAGAGTCCAAGGC...TTTCTTTTCCCAGAATGCCAGGTATTTGGATCTTCCAGTAGGTCTTTTGGGATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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CDS-3UTR CCA 90 bp | AGGATCTCACACCCTCTGAGGGCACCAGGCATGTGCTTCATACAGATATACATGTGGCTTCTTTGCCACTaGCCTTTCAGGTTCAAATGT | + |
Preference number: 4 (lower is better) Translates to: RISHPLRAPGMCFIQIYMWLLCH*PFRFKC Trigger: ACATTTGAACCTGAAAGGCCAGTGGCAAAGAAGCCA...CATGTATATCTGTATGAAGCACATGCCTGGTGCCCTCAGAGGGTGTGAGATCCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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CDS-3UTR TCA 90 bp | GATGGCTCACAGCCATCTATAACTCCAGTTCAAGAGGATCTCACACCCTCTGAGCTAGTAAGTCAACAATaGCATCCAGAGCTTTCTCAG | + |
Preference number: 4 (lower is better) Translates to: DGSQPSITPVQEDLTPSELVSQQ*HPELSQ Trigger: CTGAGAAAGCTCTGGATGTCATTGTTGACTTACTAG...CTCAGAGGGTGTGAGATCCTCTTGAACTGGAGTTATAGATGGCTGTGAGCCATC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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CDS-3UTR CCA 90 bp | AATGGTTTTCCTTCCTCTGATGTTCACAGTGCCCCTGGGTCCACATCATTCATCGCGCAGTTTCCACCTTaGCCATACTTTTCTAGTAAG | + |
Preference number: 4 (lower is better) Translates to: NGFPSSDVHSAPGSTSFIAQFPP*PYFSSK Trigger: CTTACTAGAAAAGTATGGCCAAGGTGGAAACTGCGC...GATGAATGATGTGGACCCAGGGGCACTGTGAACATCAGAGGAAGGAAAACCATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000112050.2 |
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CDS-3UTR TCA 90 bp | AATGGTTTTCCTTCCTCTGATGTTCACAGTGCCCCTGGGTCCACATCATTCATCCTAGTAAGTCAACAATaGCATCCAGAGCTTTCTCAG | + |
Preference number: 4 (lower is better) Translates to: NGFPSSDVHSAPGSTSFILVSQQ*HPELSQ Trigger: CTGAGAAAGCTCTGGATGTCATTGTTGACTTACTAG...GATGAATGATGTGGACCCAGGGGCACTGTGAACATCAGAGGAAGGAAAACCATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000112050.2 |
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3UTR CAA 72 bp | AGGGAGAGAAAAAGCCAAACAATTAGAGCCACAAGTTaGCTTGCTGCTCAGCCAAATCTTGACAGAGGTCAC | + |
Preference number: 4 (lower is better) Translates to: RERKSQTIRATS*LAAQPNLDRGH Trigger: GTGACCTCTGTCAAGATTTGGCTGAGCAGCAAGCAAACTTGTGGCTCTAATTGTTTGGCTTTTTCTCTCCCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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3UTR CAA 72 bp | TCTAAAGCCGATGGAAATAACTGGCAGTGCCCTATTTaGAAAGGTAACGGTGAAATCTTCCAGCACAGGCTC | + |
Preference number: 4 (lower is better) Translates to: SKADGNNWQCPI*KGNGEIFQHRL Trigger: GAGCCTGTGCTGGAAGATTTCACCGTTACCTTTCAAAATAGGGCACTGCCAGTTATTTCCATCGGCTTTAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112050.2 |
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CDS-3UTR TCA 90 bp | CAGAATGATAGCATAGCCCATGCGTCATGTTTATGTTTCATGCTTTATGCAACCGGAAGGCTGGGATCCTaGGGTAAAACAGAAACCATG | + |
Preference number: 4 (lower is better) Translates to: QNDSIAHASCLCFMLYATGRLGS*GKTETM Trigger: CATGGTTTCTGTTTTACCTCAGGATCCCAGCCTTCC...GGTTGCATAAAGCATGAAACATAAACATGACGCATGGGCTATGCTATCATTCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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CDS-3UTR TCA 90 bp | GATGGCTCACAGCCATCTATAACTCCAGTTCAAGAGGATCTCACACCCTCTGAGTGTATCCAACAGTGGTaGAATGTGTGGTACAAATAT | + |
Preference number: 4 (lower is better) Translates to: DGSQPSITPVQEDLTPSECIQQW*NVWYKY Trigger: ATATTTGTACCACACATTTCACCACTGTTGGATACA...CTCAGAGGGTGTGAGATCCTCTTGAACTGGAGTTATAGATGGCTGTGAGCCATC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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CDS-3UTR TCA 90 bp | CATGGCCAAGATCTACACACCTCAGCAAAGAAGGTATACAAATGGGAAATAAGCGTCTTCTGTCAGGCTTaGCATATGGCTTCTTTGCCA | + |
Preference number: 4 (lower is better) Translates to: HGQDLHTSAKKVYKWEISVFCQA*HMASLP Trigger: TGGCAAAGAAGCCATATGTCAAGCCTGACAGAAGAC...GCTTATTTCCCATTTGTATACCTTCTTTGCTGAGGTGTGTAGATCTTGGCCATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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CDS-3UTR GCA 90 bp | CATGGCCAAGATCTACACACCTCAGCAAAGAAGGTATACAAATGGGAAATAAGCCCAATGCAGACTCCATaGTCATTGGCACCCATTTCT | + |
Preference number: 4 (lower is better) Translates to: HGQDLHTSAKKVYKWEISPMQTP*SLAPIS Trigger: AGAAATGGGTGCCAATGAGCATGGAGTCTGCATTGG...GCTTATTTCCCATTTGTATACCTTCTTTGCTGAGGTGTGTAGATCTTGGCCATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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CDS-3UTR GCA 90 bp | AGGATCTCACACCCTCTGAGGGCACCAGGCATGTGCTTCATACAGATATACATGCAAATCATTATGAACTaGAGCTGGACAGTAAATTAC | + |
Preference number: 4 (lower is better) Translates to: RISHPLRAPGMCFIQIYMQIIMN*SWTVNY Trigger: GTAATTTACTGTCCAGCTGCAGTTCATAATGATTTG...CATGTATATCTGTATGAAGCACATGCCTGGTGCCCTCAGAGGGTGTGAGATCCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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CDS-3UTR GCA 90 bp | CATGGCCAAGATCTACACACCTCAGCAAAGAAGGTATACAAATGGGAAATAAGCAATCAAATTCTTCTTTaGCATCCCACCAGCCCCTCT | + |
Preference number: 4 (lower is better) Translates to: HGQDLHTSAKKVYKWEISNQILL*HPTSPS Trigger: AGAGGGGCTGGTGGGATGGCAAAGAAGAATTTGATT...GCTTATTTCCCATTTGTATACCTTCTTTGCTGAGGTGTGTAGATCTTGGCCATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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CDS-3UTR CCA 90 bp | AATCCCAAAAGACCTACTGGAAGATCCAAATACCTGGCATTCTGGGAAAAGAAAGAATGCAAGGAAGGCTaGGATCCTGAGGTAAAACAG | + |
Preference number: 4 (lower is better) Translates to: NPKRPTGRSKYLAFWEKKECKEG*DPEVKQ Trigger: CTGTTTTACCTCAGGATCCCAGCCTTCCTTGCATTC...TTTCTTTTCCCAGAATGCCAGGTATTTGGATCTTCCAGTAGGTCTTTTGGGATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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3UTR CAA 72 bp | TATCATGGCTTACAGAGGCATGGTGAAAGCTGTGTATaGAAGAAGCCAATCCCAAAAGACCTACTGGAAGAT | + |
Preference number: 4 (lower is better) Translates to: YHGLQRHGESCV*KKPIPKDLLED Trigger: ATCTTCCAGTAGGTCTTTTGGGATTGGCTTCTTCAATACACAGCTTTCACCATGCCTCTGTAAGCCATGATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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3UTR CAA 72 bp | AGAGAAAAAGCCAAACAATTAGAGCCACAAGTTTGCTaGCTGCTCAGCCAAATCTTGACAGAGGTCACTTTT | + |
Preference number: 4 (lower is better) Translates to: REKAKQLEPQVC*LLSQILTEVTF Trigger: AAAAGTGACCTCTGTCAAGATTTGGCTGAGCAGCAAGCAAACTTGTGGCTCTAATTGTTTGGCTTTTTCTCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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CDS-3UTR GCA 90 bp | CAGACATCCCTTATCTCCTTTGTAAAACTAGGAGATTCAAGATGTCGGTTCACACAAATCATTATGAACTaGAGCTGGACAGTAAATTAC | + |
Preference number: 4 (lower is better) Translates to: QTSLISFVKLGDSRCRFTQIIMN*SWTVNY Trigger: GTAATTTACTGTCCAGCTGCAGTTCATAATGATTTG...TGTGAACCGACATCTTGAATCTCCTAGTTTTACAAAGGAGATAAGGGATGTCTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112050.2 |
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CDS-3UTR GCA 90 bp | AATCCCAAAAGACCTACTGGAAGATCCAAATACCTGGCATTCTGGGAAAAGAAATGTCCAATATTGTCTTaGCTTTTTCCTTACTGTTAC | + |
Preference number: 4 (lower is better) Translates to: NPKRPTGRSKYLAFWEKKCPILS*LFPYCY Trigger: GTAACAGTAAGGAAAAAGGCAAGACAATATTGGACA...TTTCTTTTCCCAGAATGCCAGGTATTTGGATCTTCCAGTAGGTCTTTTGGGATT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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CDS-3UTR CAA 90 bp | TGGGTTTGGTCCCCAGCACCCACACGATGGCTCACAGCCATCTATAACTCCAGTAATATTACGAACGCCTaGGACTCTCTCTGCTGCCCA | + |
Preference number: 5 (lower is better) Translates to: WVWSPAPTRWLTAIYNSSNITNA*DSLCCP Trigger: TGGGCAGCAGAGAGAGTCCAAGGCGTTCGTAATATT...ACTGGAGTTATAGATGGCTGTGAGCCATCGTGTGGGTGCTGGGGACCAAACCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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CDS GCA 90 bp | GTCAGCTCTCTCAAGGCCCAGCCTGACAAGGTCCATGCCCAAAAGTaGTTCCTCCTTAGAAATGTCTTCTCTTCCCCATACAGCCTCATT | + |
Preference number: 5 (lower is better) Translates to: VSSLKAQPDKVHAQK*FLLRNVFSSPYSLI Trigger: AATGAGGCTGTATGGGGAAGAGAAGACATTTCTAAGGAGGAAGCACTTTTGGGCATGGACCTTGTCAGGCTGGGCCTTGAGAGAGCTGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000090811.11 ENSMUST00000112050.2 |
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CDS-3UTR CAA 90 bp | GGCTCACAGCCATCTATAACTCCAGTTCAAGAGGATCTCACACCCTCTGAGGGCCCCTATTTCCTACTGTaGCTGGAGGTAATGCCACAA | + |
Preference number: 5 (lower is better) Translates to: GSQPSITPVQEDLTPSEGPYFLL*LEVMPQ Trigger: TTGTGGCATTACCTCCAGCAACAGTAGGAAATAGGG...GCCCTCAGAGGGTGTGAGATCCTCTTGAACTGGAGTTATAGATGGCTGTGAGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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CDS-3UTR CAA 90 bp | CCTTCCTCTGATGTTCACAGTGCCCCTGGGTCCACATCATTCATCGTTCACCCACCCTATTTCCTACTGTaGCTGGAGGTAATGCCACAA | + |
Preference number: 5 (lower is better) Translates to: PSSDVHSAPGSTSFIVHPPYFLL*LEVMPQ Trigger: TTGTGGCATTACCTCCAGCAACAGTAGGAAATAGGG...TGGGTGAACGATGAATGATGTGGACCCAGGGGCACTGTGAACATCAGAGGAAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112050.2 |
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CDS-3UTR CAA 90 bp | CAGTTCAAGAGGATCTCACACCCTCTGAGGGCACCAGGCATGTGCTTCATACAGCCCGGTCAATCTTGGTaGTTATGGAAAGCTGATTGG | + |
Preference number: 5 (lower is better) Translates to: QFKRISHPLRAPGMCFIQPGQSW*LWKADW Trigger: CCAATCAGCTTTCCATAACAACCAAGATTGACCGGG...CTGTATGAAGCACATGCCTGGTGCCCTCAGAGGGTGTGAGATCCTCTTGAACTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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CDS-3UTR CAA 90 bp | CAGTTCAAGAGGATCTCACACCCTCTGAGGGCACCAGGCATGTGCTTCATACAGAAATCAAATTCTTCTTaGCCATCCCACCAGCCCCTC | + |
Preference number: 5 (lower is better) Translates to: QFKRISHPLRAPGMCFIQKSNSS*PSHQPL Trigger: GAGGGGCTGGTGGGATGGCAAAGAAGAATTTGATTT...CTGTATGAAGCACATGCCTGGTGCCCTCAGAGGGTGTGAGATCCTCTTGAACTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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CDS CCA 90 bp | TTTGCCATCCCACCAGCCCCTCTGCTTAGCGTAGTTCCTCATGTCTaGATGTTCCCGGTCAATCTTGGTTGTTATGGAAAGCTGATTGGA | + |
Preference number: 5 (lower is better) Translates to: FAIPPAPLLSVVPHV*MFPVNLGCYGKLIG Trigger: TCCAATCAGCTTTCCATAACAACCAAGATTGACCGGGAACATCCAGACATGAGGAACTACGCTAAGCAGAGGGGCTGGTGGGATGGCAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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CDS TCA 90 bp | TCTGTGTTTATCCAGAAGCTTGTAGCCCTGGCAGTACCTGCTTGGTaGAGTCATCATAGCAGCCGTGTCAATGTAAGAATAGGCCGCAGT | + |
Preference number: 5 (lower is better) Translates to: SVFIQKLVALAVPAW*SHHSSRVNVRIGRS Trigger: ACTGCGGCCTATTCTTACATTGACACGGCTGCTATGATGACTTCACCAAGCAGGTACTGCCAGGGCTACAAGCTTCTGGATAAACACAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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CDS-3UTR CAA 90 bp | GATGGCTCACAGCCATCTATAACTCCAGTTCAAGAGGATCTCACACCCTCTGAGGGCCTCTTGATGTTTTaGGTAGAGTGGGTGTCTTCT | + |
Preference number: 5 (lower is better) Translates to: DGSQPSITPVQEDLTPSEGLLMF*VEWVSS Trigger: AGAAGACACCCACTCTACCAAAAACATCAAGAGGCC...CTCAGAGGGTGTGAGATCCTCTTGAACTGGAGTTATAGATGGCTGTGAGCCATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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CDS-3UTR CAA 90 bp | TGGGTTTGGTCCCCAGCACCCACACGATGGCTCACAGCCATCTATAACTCCAGTCAAATGTTGGTGATTTaGTATCCAACAGTGGTGAAA | + |
Preference number: 5 (lower is better) Translates to: WVWSPAPTRWLTAIYNSSQMLVI*YPTVVK Trigger: TTTCACCACTGTTGGATACAAAATCACCAACATTTG...ACTGGAGTTATAGATGGCTGTGAGCCATCGTGTGGGTGCTGGGGACCAAACCCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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CDS-3UTR CAA 90 bp | AGGATCTCACACCCTCTGAGGGCACCAGGCATGTGCTTCATACAGATATACATGTCCAGCTTCCTCATCTaGTCCAATATTGTCTTGCCT | + |
Preference number: 5 (lower is better) Translates to: RISHPLRAPGMCFIQIYMSSFLI*SNIVLP Trigger: AGGCAAGACAATATTGGACAAGATGAGGAAGCTGGA...CATGTATATCTGTATGAAGCACATGCCTGGTGCCCTCAGAGGGTGTGAGATCCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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CDS TCA 90 bp | AGGCCTCTTGATGTTTTTGGTAGAGTGGGTGTCTTCTGTCAGGCTTaGCATATGGCTTCTTTGCCACTGGCCTTTCAGGTTCAAATGTTG | + |
Preference number: 5 (lower is better) Translates to: RPLDVFGRVGVFCQA*HMASLPLAFQVQML Trigger: CAACATTTGAACCTGAAAGGCCAGTGGCAAAGAAGCCATATGTCAAGCCTGACAGAAGACACCCACTCTACCAAAAACATCAAGAGGCCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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CDS TCA 90 bp | AAACAGAAACCATGCTTGCCGTGGTCAGGAATTCTCCCTTCATGTTaGTGCCACTGGGTCTGTCTCGAAGAATTTCCATCATCGTTTCAA | + |
Preference number: 5 (lower is better) Translates to: KQKPCLPWSGILPSC*CHWVCLEEFPSSFQ Trigger: TTGAAACGATGATGGAAATTCTTCGAGACAGACCCAGTGGCATCAACATGAAGGGAGAATTCCTGACCACGGCAAGCATGGTTTCTGTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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CDS CCA 90 bp | CGTAGTTCCTCATGTCTGGATGTTCCCGGTCAATCTTGGTTGTTATaGAAAGCTGATTGGAAATATTACGAACGCCTTGGACTCTCTCTG | + |
Preference number: 5 (lower is better) Translates to: RSSSCLDVPGQSWLL*KADWKYYERLGLSL Trigger: CAGAGAGAGTCCAAGGCGTTCGTAATATTTCCAATCAGCTTTCCATAACAACCAAGATTGACCGGGAACATCCAGACATGAGGAACTACG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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CDS CCA 90 bp | ACTGTTACTTATCATTTCCAAGGCCTCTTGATGTTTTTGGTAGAGTaGGTGTCTTCTGTCAGGCTTGACATATGGCTTCTTTGCCACTGG | + |
Preference number: 5 (lower is better) Translates to: TVTYHFQGLLMFLVE*VSSVRLDIWLLCHW Trigger: CCAGTGGCAAAGAAGCCATATGTCAAGCCTGACAGAAGACACCCACTCTACCAAAAACATCAAGAGGCCTTGGAAATGATAAGTAACAGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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CDS-3UTR CAA 90 bp | AGGATCTCACACCCTCTGAGGGCACCAGGCATGTGCTTCATACAGATATACATGTCATCTTGTCCAATATaGTCTTGCCTTTTTCCTTAC | + |
Preference number: 5 (lower is better) Translates to: RISHPLRAPGMCFIQIYMSSCPI*SCLFPY Trigger: GTAAGGAAAAAGGCAAGACAATATTGGACAAGATGA...CATGTATATCTGTATGAAGCACATGCCTGGTGCCCTCAGAGGGTGTGAGATCCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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CDS-3UTR CAA 90 bp | ATATACTCCAAGGCATTAACTACCAACCTGAGTATCCACACTGAGTATCCCACACATTTCCAAGGCCTCTaGATGTTTTTGGTAGAGTGG | + |
Preference number: 5 (lower is better) Translates to: IYSKALTTNLSIHTEYPTHFQGL*MFLVEW Trigger: CCACTCTACCAAAAACATCAAGAGGCCTTGGAAATG...TGTGGGATACTCAGTGTGGATACTCAGGTTGGTAGTTAATGCCTTGGAGTATAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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CDS-3UTR CAA 90 bp | ACAAAGAAACACACACAAGAAGAAATTAGAGGAATGTATGGCCACAAACAAATCGTAGCTGTTCACACCTaGGACTCTCTCTGCTGCCCA | + |
Preference number: 5 (lower is better) Translates to: TKKHTQEEIRGMYGHKQIVAVHT*DSLCCP Trigger: TGGGCAGCAGAGAGAGTCCAAGGTGTGAACAGCTAC...GATTTGTTTGTGGCCATACATTCCTCTAATTTCTTCTTGTGTGTGTTTCTTTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112050.2 |
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CDS TCA 90 bp | CAGCATATGTTTCAGGAACTTGATCAACTTCTATATAAGTACACTTaGGACGTTTTTCCAAATCATTATGAACTGCAGCTGGACAGTAAA | + |
Preference number: 5 (lower is better) Translates to: QHMFQELDQLLYKYT*DVFPNHYELQLDSK Trigger: TTTACTGTCCAGCTGCAGTTCATAATGATTTGGAAAAACGTCTCAAGTGTACTTATATAGAAGTTGATCAAGTTCCTGAAACATATGCTG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000090811.11 ENSMUST00000112050.2 |
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CDS GCA 72 bp | CTGATTGGAAATATTACGAACGCCTTGGACTCTCTCTaGTGCCCAGTACTTCCCCGACGTCTCCAGGATCCA | + |
Preference number: 6 (lower is better) Translates to: LIGNITNALDSL*CPVLPRRLQDP Trigger: TGGATCCTGGAGACGTCGGGGAAGTACTGGGCAGCAGAGAGAGTCCAAGGCGTTCGTAATATTTCCAATCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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CDS GCA 72 bp | CTCAAGGCCCAGCCTGACAAGGTCCATGCCCAAAAGTaGTTCCTCCTTAGAAATGTCTTCTCTTCCCCATAC | + |
Preference number: 6 (lower is better) Translates to: LKAQPDKVHAQK*FLLRNVFSSPY Trigger: GTATGGGGAAGAGAAGACATTTCTAAGGAGGAAGCACTTTTGGGCATGGACCTTGTCAGGCTGGGCCTTGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000090811.11 ENSMUST00000112050.2 |
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CDS CCA 72 bp | CCACCAGCCCCTCTGCTTAGCGTAGTTCCTCATGTCTaGATGTTCCCGGTCAATCTTGGTTGTTATGGAAAG | + |
Preference number: 6 (lower is better) Translates to: PPAPLLSVVPHV*MFPVNLGCYGK Trigger: CTTTCCATAACAACCAAGATTGACCGGGAACATCCAGACATGAGGAACTACGCTAAGCAGAGGGGCTGGTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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CDS TCA 72 bp | CCATGCTTGCCGTGGTCAGGAATTCTCCCTTCATGTTaGTGCCACTGGGTCTGTCTCGAAGAATTTCCATCA | + |
Preference number: 6 (lower is better) Translates to: PCLPWSGILPSC*CHWVCLEEFPS Trigger: TGATGGAAATTCTTCGAGACAGACCCAGTGGCATCAACATGAAGGGAGAATTCCTGACCACGGCAAGCATGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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CDS CAA 72 bp | ACCATGCTTGCCGTGGTCAGGAATTCTCCCTTCATGTaGATGCCACTGGGTCTGTCTCGAAGAATTTCCATC | + |
Preference number: 6 (lower is better) Translates to: TMLAVVRNSPFM*MPLGLSRRISI Trigger: GATGGAAATTCTTCGAGACAGACCCAGTGGCATCAACATGAAGGGAGAATTCCTGACCACGGCAAGCATGGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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CDS TCA 72 bp | CATTCCTGTCAGCTATCAGGAAACTGTTGTAATAGCTaGACTCTTTGCCCTCTGCGCAGTTTCCACCTTGGC | + |
Preference number: 6 (lower is better) Translates to: HSCQLSGNCCNS*TLCPLRSFHLG Trigger: GCCAAGGTGGAAACTGCGCAGAGGGCAAAGAGTTCAGCTATTACAACAGTTTCCTGATAGCTGACAGGAATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000090811.11 ENSMUST00000112050.2 |
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CDS TCA 72 bp | ATCCAGAAGCTTGTAGCCCTGGCAGTACCTGCTTGGTaGAGTCATCATAGCAGCCGTGTCAATGTAAGAATA | + |
Preference number: 6 (lower is better) Translates to: IQKLVALAVPAW*SHHSSRVNVRI Trigger: TATTCTTACATTGACACGGCTGCTATGATGACTTCACCAAGCAGGTACTGCCAGGGCTACAAGCTTCTGGAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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CDS TCA 72 bp | GATGTTTTTGGTAGAGTGGGTGTCTTCTGTCAGGCTTaGCATATGGCTTCTTTGCCACTGGCCTTTCAGGTT | + |
Preference number: 6 (lower is better) Translates to: DVFGRVGVFCQA*HMASLPLAFQV Trigger: AACCTGAAAGGCCAGTGGCAAAGAAGCCATATGTCAAGCCTGACAGAAGACACCCACTCTACCAAAAACATC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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CDS CCA 72 bp | TTGGTAGAGTGGGTGTCTTCTGTCAGGCTTGACATATaGCTTCTTTGCCACTGGCCTTTCAGGTTCAAATGT | + |
Preference number: 6 (lower is better) Translates to: LVEWVSSVRLDI*LLCHWPFRFKC Trigger: ACATTTGAACCTGAAAGGCCAGTGGCAAAGAAGCCATATGTCAAGCCTGACAGAAGACACCCACTCTACCAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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CDS CAA 90 bp | AAAACAGAAACCATGCTTGCCGTGGTCAGGAATTCTCCCTTCATGTaGATGCCACTGGGTCTGTCTCGAAGAATTTCCATCATCGTTTCA | + |
Preference number: 6 (lower is better) Translates to: KTETMLAVVRNSPFM*MPLGLSRRISIIVS Trigger: TGAAACGATGATGGAAATTCTTCGAGACAGACCCAGTGGCATCAACATGAAGGGAGAATTCCTGACCACGGCAAGCATGGTTTCTGTTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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CDS CAA 72 bp | CAGTTTTCTCCTCGTCGAGATGTCCACTCTGGAGGATaGATTCTATCTCTTCAGATACTGCTTTTTCCAGCT | + |
Preference number: 6 (lower is better) Translates to: QFSPRRDVHSGG*ILSLQILLFPA Trigger: AGCTGGAAAAAGCAGTATCTGAAGAGATAGAATCAATCCTCCAGAGTGGACATCTCGACGAGGAGAAAACTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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CDS CCA 72 bp | TCATGTCTGGATGTTCCCGGTCAATCTTGGTTGTTATaGAAAGCTGATTGGAAATATTACGAACGCCTTGGA | + |
Preference number: 6 (lower is better) Translates to: SCLDVPGQSWLL*KADWKYYERLG Trigger: TCCAAGGCGTTCGTAATATTTCCAATCAGCTTTCCATAACAACCAAGATTGACCGGGAACATCCAGACATGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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CDS CAA 72 bp | ATGGCTTCTTTGCCACTGGCCTTTCAGGTTCAAATGTaGGTGATTTTGTATCCAACAGTGGTGAAATGTGTG | + |
Preference number: 6 (lower is better) Translates to: MASLPLAFQVQM*VILYPTVVKCV Trigger: CACACATTTCACCACTGTTGGATACAAAATCACCAACATTTGAACCTGAAAGGCCAGTGGCAAAGAAGCCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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CDS CCA 72 bp | CGTAGTTCCTCATGTCTGGATGTTCCCGGTCAATCTTaGTTGTTATGGAAAGCTGATTGGAAATATTACGAA | + |
Preference number: 6 (lower is better) Translates to: RSSSCLDVPGQS*LLWKADWKYYE Trigger: TTCGTAATATTTCCAATCAGCTTTCCATAACAACCAAGATTGACCGGGAACATCCAGACATGAGGAACTACG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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CDS CAA 72 bp | ACTGTTACTTATCATTTCCAAGGCCTCTTGATGTTTTaGGTAGAGTGGGTGTCTTCTGTCAGGCTTGACATA | + |
Preference number: 6 (lower is better) Translates to: TVTYHFQGLLMF*VEWVSSVRLDI Trigger: TATGTCAAGCCTGACAGAAGACACCCACTCTACCAAAAACATCAAGAGGCCTTGGAAATGATAAGTAACAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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CDS CAA 90 bp | CAGCCAAGCTGGGCGACTAAGGACAACAGCATATGTTTCAGGAACTaGATCAACTTCTATATAAGTACACTTGAGACGTTTTTCCAAATC | + |
Preference number: 6 (lower is better) Translates to: QPSWATKDNSICFRN*INFYISTLETFFQI Trigger: GATTTGGAAAAACGTCTCAAGTGTACTTATATAGAAGTTGATCAAGTTCCTGAAACATATGCTGTTGTCCTTAGTCGCCCAGCTTGGCTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000090811.11 ENSMUST00000112050.2 |
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CDS CCA 72 bp | AGATTAACAGTTTTCTCCTCGTCGAGATGTCCACTCTaGAGGATTGATTCTATCTCTTCAGATACTGCTTTT | + |
Preference number: 6 (lower is better) Translates to: RLTVFSSSRCPL*RIDSISSDTAF Trigger: AAAAGCAGTATCTGAAGAGATAGAATCAATCCTCCAGAGTGGACATCTCGACGAGGAGAAAACTGTTAATCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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CDS CAA 72 bp | TTGCCACTGGCCTTTCAGGTTCAAATGTTGGTGATTTaGTATCCAACAGTGGTGAAATGTGTGGTACAAATA | + |
Preference number: 6 (lower is better) Translates to: LPLAFQVQMLVI*YPTVVKCVVQI Trigger: TATTTGTACCACACATTTCACCACTGTTGGATACAAAATCACCAACATTTGAACCTGAAAGGCCAGTGGCAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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CDS CAA 72 bp | TGGGCGACTAAGGACAACAGCATATGTTTCAGGAACTaGATCAACTTCTATATAAGTACACTTGAGACGTTT | + |
Preference number: 6 (lower is better) Translates to: WATKDNSICFRN*INFYISTLETF Trigger: AAACGTCTCAAGTGTACTTATATAGAAGTTGATCAAGTTCCTGAAACATATGCTGTTGTCCTTAGTCGCCCA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000090811.11 ENSMUST00000112050.2 |
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CDS CAA 72 bp | ATCTCTTCAGATACTGCTTTTTCCAGCTTCCTCATCTaGTCCAATATTGTCTTGCCTTTTTCCTTACTGTTA | + |
Preference number: 6 (lower is better) Translates to: ISSDTAFSSFLI*SNIVLPFSLLL Trigger: TAACAGTAAGGAAAAAGGCAAGACAATATTGGACAAGATGAGGAAGCTGGAAAAAGCAGTATCTGAAGAGAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000090811.11 |
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CDS GCA 72 bp | AGTACACTTGAGACGTTTTTCCAAATCATTATGAACTaGAGCTGGACAGTAAATTACTTCTTGTACTTCATC | + |
Preference number: 6 (lower is better) Translates to: STLETFFQIIMN*SWTVNYFLYFI Trigger: GATGAAGTACAAGAAGTAATTTACTGTCCAGCTGCAGTTCATAATGATTTGGAAAAACGTCTCAAGTGTACT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000090811.11 ENSMUST00000112050.2 |