RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SCRN3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000008226

Ensembl transcript IDs: ENSMUST00000090811.11, ENSMUST00000112050.2

Found 136 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TGGGAGGAGCTGGAGAGATGGCTCAGGGGTAAGAGTGCTTGCTCTTaGACAGGATCTGGGTTTGGTCCCCAGCACCCACACGATGGCTCA +
Preference number: 1 (lower is better)
Translates to: WEELERWLRGKSACS*TGSGFGPQHPHDGS
Trigger: TGAGCCATCGTGTGGGTGCTGGGGACCAAACCCAGATCCTGTGCAAGAGCAAGCACTCTTACCCCTGAGCCATCTCTCCAGCTCCTCCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
3UTR GCA 90 bp GAGTGCTGGGAGGAGCTGGAGAGATGGCTCAGGGGTAAGAGTGCTTaGTCTTGCACAGGATCTGGGTTTGGTCCCCAGCACCCACACGAT +
Preference number: 1 (lower is better)
Translates to: ECWEELERWLRGKSA*SCTGSGFGPQHPHD
Trigger: ATCGTGTGGGTGCTGGGGACCAAACCCAGATCCTGTGCAAGAGCAAGCACTCTTACCCCTGAGCCATCTCTCCAGCTCCTCCCAGCACTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
3UTR TCA 90 bp GGAGCAGTAAACCACAGGGACCACGAGTCACCGTGGGTTGTCCTCTaGCCTTCACTTGAACACAGCGGTCTAATATGCCTCCCTCCACAT +
Preference number: 1 (lower is better)
Translates to: GAVNHRDHESPWVVL*PSLEHSGLICLPPH
Trigger: ATGTGGAGGGAGGCATATTAGACCGCTGTGTTCAAGTGAAGGTCAGAGGACAACCCACGGTGACTCGTGGTCCCTGTGGTTTACTGCTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112050.2
3UTR CCA 90 bp TTGCTCTTGCACAGGATCTGGGTTTGGTCCCCAGCACCCACACGATaGCTCACAGCCATCTATAACTCCAGTTCAAGAGGATCTCACACC +
Preference number: 1 (lower is better)
Translates to: LLLHRIWVWSPAPTR*LTAIYNSSSRGSHT
Trigger: GGTGTGAGATCCTCTTGAACTGGAGTTATAGATGGCTGTGAGCCATCGTGTGGGTGCTGGGGACCAAACCCAGATCCTGTGCAAGAGCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
3UTR TCA 90 bp CCACAGGGACCACGAGTCACCGTGGGTTGTCCTCTGACCTTCACTTaGACACAGCGGTCTAATATGCCTCCCTCCACATATATACATGCA +
Preference number: 1 (lower is better)
Translates to: PQGPRVTVGCPLTFT*TQRSNMPPSTYIHA
Trigger: TGCATGTATATATGTGGAGGGAGGCATATTAGACCGCTGTGTTCAAGTGAAGGTCAGAGGACAACCCACGGTGACTCGTGGTCCCTGTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112050.2
3UTR CCA 90 bp GCTCTTAAGAGGTTTAGACTTGAGTGCTGGGAGGAGCTGGAGAGATaGCTCAGGGGTAAGAGTGCTTGCTCTTGCACAGGATCTGGGTTT +
Preference number: 1 (lower is better)
Translates to: ALKRFRLECWEELER*LRGKSACSCTGSGF
Trigger: AAACCCAGATCCTGTGCAAGAGCAAGCACTCTTACCCCTGAGCCATCTCTCCAGCTCCTCCCAGCACTCAAGTCTAAACCTCTTAAGAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
3UTR CCA 90 bp GCGGGATTACAGCTGTGTCCCACCCGTCTCCATTTTACACACTGCTaGGGATTCAACCAGGACTTGTGTGTGCCAGATAAGCAACAGCAA +
Preference number: 1 (lower is better)
Translates to: AGLQLCPTRLHFTHC*GFNQDLCVPDKQQQ
Trigger: TTGCTGTTGCTTATCTGGCACACACAAGTCCTGGTTGAATCCCCAGCAGTGTGTAAAATGGAGACGGGTGGGACACAGCTGTAATCCCGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112050.2
3UTR CCA 90 bp CATCTGACATGGGCTGAACGCTTAGAGCTAGCAGCAACTCACACGTaGATGCTTACTCACAATTGCCAAAATCTGGAAGCAGCCAAGAGG +
Preference number: 1 (lower is better)
Translates to: HLTWAERLELAATHT*MLTHNCQNLEAAKR
Trigger: CCTCTTGGCTGCTTCCAGATTTTGGCAATTGTGAGTAAGCATCCACGTGTGAGTTGCTGCTAGCTCTAAGCGTTCAGCCCATGTCAGATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
3UTR CCA 90 bp AACAATGAGCTCTTAAGAGGTTTAGACTTGAGTGCTGGGAGGAGCTaGAGAGATGGCTCAGGGGTAAGAGTGCTTGCTCTTGCACAGGAT +
Preference number: 1 (lower is better)
Translates to: NNELLRGLDLSAGRS*RDGSGVRVLALAQD
Trigger: ATCCTGTGCAAGAGCAAGCACTCTTACCCCTGAGCCATCTCTCCAGCTCCTCCCAGCACTCAAGTCTAAACCTCTTAAGAGCTCATTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
3UTR TCA 90 bp CTCACAGCCATCTATAACTCCAGTTCAAGAGGATCTCACACCCTCTaGGGGCACCAGGCATGTGCTTCATACAGATATACATGGAGGCAA +
Preference number: 1 (lower is better)
Translates to: LTAIYNSSSRGSHTL*GHQACASYRYTWRQ
Trigger: TTGCCTCCATGTATATCTGTATGAAGCACATGCCTGGTGCCCTCAGAGGGTGTGAGATCCTCTTGAACTGGAGTTATAGATGGCTGTGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
3UTR TCA 90 bp ACAGCATTTCTAAAGCCGATGGAAATAACTGGCAGTGCCCTATTTTaGAAGGTAACGGTGAAATCTTCCAGCACAGGCTCCCGTGACGTC +
Preference number: 1 (lower is better)
Translates to: TAFLKPMEITGSALF*KVTVKSSSTGSRDV
Trigger: GACGTCACGGGAGCCTGTGCTGGAAGATTTCACCGTTACCTTTCAAAATAGGGCACTGCCAGTTATTTCCATCGGCTTTAGAAATGCTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112050.2
3UTR TCA 90 bp AAAGGAGCTATCATGGCTTACAGAGGCATGGTGAAAGCTGTGTATTaGAGAAGCCAATCCCAAAAGACCTACTGGAAGATCCAAATACCT +
Preference number: 1 (lower is better)
Translates to: KGAIMAYRGMVKAVY*RSQSQKTYWKIQIP
Trigger: AGGTATTTGGATCTTCCAGTAGGTCTTTTGGGATTGGCTTCTTCAATACACAGCTTTCACCATGCCTCTGTAAGCCATGATAGCTCCTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
3UTR GCA 90 bp TCTGCAGACTGTGTGGCAATGTCAAACAGCGTAAATCTAGACCTCTaGCTTGTTAAAGCTGGTTACTATTTGCCTAAAGCACAAACAATG +
Preference number: 1 (lower is better)
Translates to: SADCVAMSNSVNLDL*LVKAGYYLPKAQTM
Trigger: CATTGTTTGTGCTTTAGGCAAATAGTAACCAGCTTTAACAAGGCAGAGGTCTAGATTTACGCTGTTTGACATTGCCACACAGTCTGCAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
3UTR TCA 90 bp AACCTGAGTATCCACACTGAGTATCCCACAATGAGTATCCTGCAGTaGAAATCTCTACAAGTTAACTCACATATCCATATAATCCTTGTA +
Preference number: 1 (lower is better)
Translates to: NLSIHTEYPTMSILQ*KSLQVNSHIHIILV
Trigger: TACAAGGATTATATGGATATGTGAGTTAACTTGTAGAGATTTTCACTGCAGGATACTCATTGTGGGATACTCAGTGTGGATACTCAGGTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
3UTR CAA 90 bp AAGGTAACGGTGAAATCTTCCAGCACAGGCTCCCGTGACGTCCTTTaGCCCCCAGAAGCTCACAATGGTTTTCCTTCCTCTGATGTTCAC +
Preference number: 2 (lower is better)
Translates to: KVTVKSSSTGSRDVL*PPEAHNGFPSSDVH
Trigger: GTGAACATCAGAGGAAGGAAAACCATTGTGAGCTTCTGGGGGCAAAAGGACGTCACGGGAGCCTGTGCTGGAAGATTTCACCGTTACCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112050.2
3UTR-3UTR CCA 90 bp CAGTTCAAGAGGATCTCACACCCTCTGAGGGCACCAGGCATGTGCTTCATACAGAGGAGACAACGGTGGTaGTTTCTCACTCACACAACA +
Preference number: 2 (lower is better)
Translates to: QFKRISHPLRAPGMCFIQRRQRW*FLTHTT
Trigger: TGTTGTGTGAGTGAGAAACCACCACCGTTGTCTCCT...CTGTATGAAGCACATGCCTGGTGCCCTCAGAGGGTGTGAGATCCTCTTGAACTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
3UTR-3UTR GCA 90 bp TCACAGCCATCTATAACTCCAGTTCAAGAGGATCTCACACCCTCTGAGGGCACCTTAGAGCCACAAGTTTaGTTGCTGCTCAGCCAAATC +
Preference number: 2 (lower is better)
Translates to: SQPSITPVQEDLTPSEGTLEPQV*LLLSQI
Trigger: GATTTGGCTGAGCAGCAAGCAAACTTGTGGCTCTAA...GGTGCCCTCAGAGGGTGTGAGATCCTCTTGAACTGGAGTTATAGATGGCTGTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
3UTR-3UTR CCA 90 bp AGGATCTCACACCCTCTGAGGGCACCAGGCATGTGCTTCATACAGATATACATGGCAGCAACTCACACGTaGATGCTTACTCACAATTGC +
Preference number: 2 (lower is better)
Translates to: RISHPLRAPGMCFIQIYMAATHT*MLTHNC
Trigger: GCAATTGTGAGTAAGCATCCACGTGTGAGTTGCTGC...CATGTATATCTGTATGAAGCACATGCCTGGTGCCCTCAGAGGGTGTGAGATCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
3UTR-3UTR TCA 90 bp GATGGCTCACAGCCATCTATAACTCCAGTTCAAGAGGATCTCACACCCTCTGAGGTGAAAGCTGTGTATTaGAGAAGCCAATCCCAAAAG +
Preference number: 2 (lower is better)
Translates to: DGSQPSITPVQEDLTPSEVKAVY*RSQSQK
Trigger: CTTTTGGGATTGGCTTCTTCAATACACAGCTTTCAC...CTCAGAGGGTGTGAGATCCTCTTGAACTGGAGTTATAGATGGCTGTGAGCCATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
3UTR-3UTR TCA 90 bp TCACAGCCATCTATAACTCCAGTTCAAGAGGATCTCACACCCTCTGAGGGCACCCACAAACAATGCACTTaGCATATTTTCCACTGCTTA +
Preference number: 2 (lower is better)
Translates to: SQPSITPVQEDLTPSEGTHKQCT*HIFHCL
Trigger: TAAGCAGTGGAAAATATGTCAAGTGCATTGTTTGTG...GGTGCCCTCAGAGGGTGTGAGATCCTCTTGAACTGGAGTTATAGATGGCTGTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
3UTR-3UTR GCA 90 bp GATGGCTCACAGCCATCTATAACTCCAGTTCAAGAGGATCTCACACCCTCTGAGGTAAATCTAGACCTCTaGCTTGTTAAAGCTGGTTAC +
Preference number: 2 (lower is better)
Translates to: DGSQPSITPVQEDLTPSEVNLDL*LVKAGY
Trigger: GTAACCAGCTTTAACAAGGCAGAGGTCTAGATTTAC...CTCAGAGGGTGTGAGATCCTCTTGAACTGGAGTTATAGATGGCTGTGAGCCATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
3UTR-3UTR CCA 90 bp ATATACTCCAAGGCATTAACTACCAACCTGAGTATCCACACTGAGTATCCCACATTTAGACTTGAGTGCTaGGAGGAGCTGGAGAGATGG +
Preference number: 2 (lower is better)
Translates to: IYSKALTTNLSIHTEYPTFRLEC*EELERW
Trigger: CCATCTCTCCAGCTCCTCCCAGCACTCAAGTCTAAA...TGTGGGATACTCAGTGTGGATACTCAGGTTGGTAGTTAATGCCTTGGAGTATAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
3UTR CAA 90 bp GAAAGGAGCTATCATGGCTTACAGAGGCATGGTGAAAGCTGTGTATaGAAGAAGCCAATCCCAAAAGACCTACTGGAAGATCCAAATACC +
Preference number: 2 (lower is better)
Translates to: ERSYHGLQRHGESCV*KKPIPKDLLEDPNT
Trigger: GGTATTTGGATCTTCCAGTAGGTCTTTTGGGATTGGCTTCTTCAATACACAGCTTTCACCATGCCTCTGTAAGCCATGATAGCTCCTTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
3UTR-3UTR TCA 90 bp CATGGCCAAGATCTACACACCTCAGCAAAGAAGGTATACAAATGGGAAATAAGCCTTACAGAGGCATGGTaGAAGCTGTGTATTGAAGAA +
Preference number: 2 (lower is better)
Translates to: HGQDLHTSAKKVYKWEISLTEAW*KLCIEE
Trigger: TTCTTCAATACACAGCTTTCACCATGCCTCTGTAAG...GCTTATTTCCCATTTGTATACCTTCTTTGCTGAGGTGTGTAGATCTTGGCCATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
3UTR-3UTR CCA 90 bp CATGGCCAAGATCTACACACCTCAGCAAAGAAGGTATACAAATGGGAAATAAGCACAATTGCCAAAATCTaGAAGCAGCCAAGAGGCTTT +
Preference number: 2 (lower is better)
Translates to: HGQDLHTSAKKVYKWEISTIAKI*KQPRGF
Trigger: AAAGCCTCTTGGCTGCTTCCAGATTTTGGCAATTGT...GCTTATTTCCCATTTGTATACCTTCTTTGCTGAGGTGTGTAGATCTTGGCCATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
3UTR-3UTR CCA 90 bp CTAGGAGATTCAAGATGTCGGTTCACAAGAAGCGTGAGATTATGTTTCCACACCCACAAACAAATCACCTaGAGAAATCAATTCCAAAGC +
Preference number: 2 (lower is better)
Translates to: LGDSRCRFTRSVRLCFHTHKQIT*RNQFQS
Trigger: GCTTTGGAATTGATTTCTCCAGGTGATTTGTTTGTG...GGTGTGGAAACATAATCTCACGCTTCTTGTGAACCGACATCTTGAATCTCCTAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112050.2
3UTR-3UTR TCA 90 bp ATATACTCCAAGGCATTAACTACCAACCTGAGTATCCACACTGAGTATCCCACATACCACCTAATACTATaGGGAAATAATCAGATCTCC +
Preference number: 2 (lower is better)
Translates to: IYSKALTTNLSIHTEYPTYHLIL*GNNQIS
Trigger: GGAGATCTGATTATTTCCTCATAGTATTAGGTGGTA...TGTGGGATACTCAGTGTGGATACTCAGGTTGGTAGTTAATGCCTTGGAGTATAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
3UTR-3UTR CCA 90 bp CATGGCCAAGATCTACACACCTCAGCAAAGAAGGTATACAAATGGGAAATAAGCAAATACCTGGCATTCTaGGAAAAGAAAATCTACCCA +
Preference number: 2 (lower is better)
Translates to: HGQDLHTSAKKVYKWEISKYLAF*EKKIYP
Trigger: TGGGTAGATTTTCTTTTCCCAGAATGCCAGGTATTT...GCTTATTTCCCATTTGTATACCTTCTTTGCTGAGGTGTGTAGATCTTGGCCATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
3UTR CAA 90 bp AACAGCGTAAATCTAGACCTCTGCCTTGTTAAAGCTGGTTACTATTaGCCTAAAGCACAAACAATGCACTTGACATATTTTCCACTGCTT +
Preference number: 2 (lower is better)
Translates to: NSVNLDLCLVKAGYY*PKAQTMHLTYFPLL
Trigger: AAGCAGTGGAAAATATGTCAAGTGCATTGTTTGTGCTTTAGGCAAATAGTAACCAGCTTTAACAAGGCAGAGGTCTAGATTTACGCTGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
3UTR-3UTR GCA 90 bp AATCCCAAAAGACCTACTGGAAGATCCAAATACCTGGCATTCTGGGAAAAGAAAAAGCTGGTTACTATTTaGCTAAAGCACAAACAATGC +
Preference number: 2 (lower is better)
Translates to: NPKRPTGRSKYLAFWEKKKLVTI*LKHKQC
Trigger: GCATTGTTTGTGCTTTAGGCAAATAGTAACCAGCTT...TTTCTTTTCCCAGAATGCCAGGTATTTGGATCTTCCAGTAGGTCTTTTGGGATT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
3UTR CAA 90 bp CTTGTTAAAGCTGGTTACTATTTGCCTAAAGCACAAACAATGCACTaGACATATTTTCCACTGCTTAAGGAAAAGAAAGCCTTGAGCTTT +
Preference number: 2 (lower is better)
Translates to: LVKAGYYLPKAQTMH*TYFPLLKEKKALSF
Trigger: AAAGCTCAAGGCTTTCTTTTCCTTAAGCAGTGGAAAATATGTCAAGTGCATTGTTTGTGCTTTAGGCAAATAGTAACCAGCTTTAACAAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
3UTR GCA 72 bp CTGGAGAGATGGCTCAGGGGTAAGAGTGCTTGCTCTTaGACAGGATCTGGGTTTGGTCCCCAGCACCCACAC +
Preference number: 3 (lower is better)
Translates to: LERWLRGKSACS*TGSGFGPQHPH
Trigger: GTGTGGGTGCTGGGGACCAAACCCAGATCCTGTGCAAGAGCAAGCACTCTTACCCCTGAGCCATCTCTCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
3UTR GCA 72 bp GAGGAGCTGGAGAGATGGCTCAGGGGTAAGAGTGCTTaGTCTTGCACAGGATCTGGGTTTGGTCCCCAGCAC +
Preference number: 3 (lower is better)
Translates to: EELERWLRGKSA*SCTGSGFGPQH
Trigger: GTGCTGGGGACCAAACCCAGATCCTGTGCAAGAGCAAGCACTCTTACCCCTGAGCCATCTCTCCAGCTCCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
3UTR CCA 72 bp GATAAGGTCAGGGATGACGGTGGTGTCTACAGTCCCTaGACTTCTGTGGTGAGACGGAAGGCGATGGGAGAA +
Preference number: 3 (lower is better)
Translates to: DKVRDDGGVYSP*TSVVRRKAMGE
Trigger: TTCTCCCATCGCCTTCCGTCTCACCACAGAAGTCCAGGGACTGTAGACACCACCGTCATCCCTGACCTTATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112050.2
3UTR TCA 72 bp AACCACAGGGACCACGAGTCACCGTGGGTTGTCCTCTaGCCTTCACTTGAACACAGCGGTCTAATATGCCTC +
Preference number: 3 (lower is better)
Translates to: NHRDHESPWVVL*PSLEHSGLICL
Trigger: GAGGCATATTAGACCGCTGTGTTCAAGTGAAGGTCAGAGGACAACCCACGGTGACTCGTGGTCCCTGTGGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112050.2
3UTR TCA 72 bp ATGACGGTGGTGTCTACAGTCCCTGGACTTCTGTGGTaGGACGGAAGGCGATGGGAGAAAATCCCCAGAAGT +
Preference number: 3 (lower is better)
Translates to: MTVVSTVPGLLW*DGRRWEKIPRS
Trigger: ACTTCTGGGGATTTTCTCCCATCGCCTTCCGTCTCACCACAGAAGTCCAGGGACTGTAGACACCACCGTCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112050.2
3UTR CCA 72 bp CACAGGATCTGGGTTTGGTCCCCAGCACCCACACGATaGCTCACAGCCATCTATAACTCCAGTTCAAGAGGA +
Preference number: 3 (lower is better)
Translates to: HRIWVWSPAPTR*LTAIYNSSSRG
Trigger: TCCTCTTGAACTGGAGTTATAGATGGCTGTGAGCCATCGTGTGGGTGCTGGGGACCAAACCCAGATCCTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
3UTR TCA 72 bp CCACGAGTCACCGTGGGTTGTCCTCTGACCTTCACTTaGACACAGCGGTCTAATATGCCTCCCTCCACATAT +
Preference number: 3 (lower is better)
Translates to: PRVTVGCPLTFT*TQRSNMPPSTY
Trigger: ATATGTGGAGGGAGGCATATTAGACCGCTGTGTTCAAGTGAAGGTCAGAGGACAACCCACGGTGACTCGTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112050.2
3UTR TCA 72 bp AAAGGTAACGGTGAAATCTTCCAGCACAGGCTCCCGTaGCGTCCTTTTGCCCCCAGAAGCTCACAATGGTTT +
Preference number: 3 (lower is better)
Translates to: KGNGEIFQHRLP*RPFAPRSSQWF
Trigger: AAACCATTGTGAGCTTCTGGGGGCAAAAGGACGTCACGGGAGCCTGTGCTGGAAGATTTCACCGTTACCTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112050.2
3UTR-3UTR CAA 90 bp AGGATCTCACACCCTCTGAGGGCACCAGGCATGTGCTTCATACAGATATACATGCTGCTCAGCCAAATCTaGACAGAGGTCACTTTTGAG +
Preference number: 3 (lower is better)
Translates to: RISHPLRAPGMCFIQIYMLLSQI*TEVTFE
Trigger: CTCAAAAGTGACCTCTGTCAAGATTTGGCTGAGCAG...CATGTATATCTGTATGAAGCACATGCCTGGTGCCCTCAGAGGGTGTGAGATCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
3UTR GCA 72 bp AAGAGGATCTCACACCCTCTGAGGGCACCAGGCATGTaGTTCATACAGATATACATGGAGGCAAAACACTCA +
Preference number: 3 (lower is better)
Translates to: KRISHPLRAPGM*FIQIYMEAKHS
Trigger: TGAGTGTTTTGCCTCCATGTATATCTGTATGAAGCACATGCCTGGTGCCCTCAGAGGGTGTGAGATCCTCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
3UTR CCA 72 bp CTCACACGTGGATGCTTACTCACAATTGCCAAAATCTaGAAGCAGCCAAGAGGCTTTCTGGTAGTGACACAC +
Preference number: 3 (lower is better)
Translates to: LTRGCLLTIAKI*KQPRGFLVVTH
Trigger: GTGTGTCACTACCAGAAAGCCTCTTGGCTGCTTCCAGATTTTGGCAATTGTGAGTAAGCATCCACGTGTGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
3UTR CCA 72 bp TGGGCTGAACGCTTAGAGCTAGCAGCAACTCACACGTaGATGCTTACTCACAATTGCCAAAATCTGGAAGCA +
Preference number: 3 (lower is better)
Translates to: WAERLELAATHT*MLTHNCQNLEA
Trigger: TGCTTCCAGATTTTGGCAATTGTGAGTAAGCATCCACGTGTGAGTTGCTGCTAGCTCTAAGCGTTCAGCCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
3UTR-3UTR CAA 90 bp CAGTTCAAGAGGATCTCACACCCTCTGAGGGCACCAGGCATGTGCTTCATACAGGCACAAACAATGCACTaGACATATTTTCCACTGCTT +
Preference number: 3 (lower is better)
Translates to: QFKRISHPLRAPGMCFIQAQTMH*TYFPLL
Trigger: AAGCAGTGGAAAATATGTCAAGTGCATTGTTTGTGC...CTGTATGAAGCACATGCCTGGTGCCCTCAGAGGGTGTGAGATCCTCTTGAACTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
3UTR TCA 72 bp CTAAAGCCGATGGAAATAACTGGCAGTGCCCTATTTTaGAAGGTAACGGTGAAATCTTCCAGCACAGGCTCC +
Preference number: 3 (lower is better)
Translates to: LKPMEITGSALF*KVTVKSSSTGS
Trigger: GGAGCCTGTGCTGGAAGATTTCACCGTTACCTTTCAAAATAGGGCACTGCCAGTTATTTCCATCGGCTTTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112050.2
3UTR-3UTR CAA 90 bp ATATACTCCAAGGCATTAACTACCAACCTGAGTATCCACACTGAGTATCCCACAGAGCCACAAGTTTGCTaGCTGCTCAGCCAAATCTTG +
Preference number: 3 (lower is better)
Translates to: IYSKALTTNLSIHTEYPTEPQVC*LLSQIL
Trigger: CAAGATTTGGCTGAGCAGCAAGCAAACTTGTGGCTC...TGTGGGATACTCAGTGTGGATACTCAGGTTGGTAGTTAATGCCTTGGAGTATAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
3UTR TCA 72 bp ATCTATAACTCCAGTTCAAGAGGATCTCACACCCTCTaGGGGCACCAGGCATGTGCTTCATACAGATATACA +
Preference number: 3 (lower is better)
Translates to: IYNSSSRGSHTL*GHQACASYRYT
Trigger: TGTATATCTGTATGAAGCACATGCCTGGTGCCCTCAGAGGGTGTGAGATCCTCTTGAACTGGAGTTATAGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
3UTR GCA 72 bp GGGAGAGAAAAAGCCAAACAATTAGAGCCACAAGTTTaGTTGCTGCTCAGCCAAATCTTGACAGAGGTCACT +
Preference number: 3 (lower is better)
Translates to: GREKAKQLEPQV*LLLSQILTEVT
Trigger: AGTGACCTCTGTCAAGATTTGGCTGAGCAGCAAGCAAACTTGTGGCTCTAATTGTTTGGCTTTTTCTCTCCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
3UTR TCA 72 bp ATCATGGCTTACAGAGGCATGGTGAAAGCTGTGTATTaGAGAAGCCAATCCCAAAAGACCTACTGGAAGATC +
Preference number: 3 (lower is better)
Translates to: IMAYRGMVKAVY*RSQSQKTYWKI
Trigger: GATCTTCCAGTAGGTCTTTTGGGATTGGCTTCTTCAATACACAGCTTTCACCATGCCTCTGTAAGCCATGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
3UTR GCA 72 bp TGTGTGGCAATGTCAAACAGCGTAAATCTAGACCTCTaGCTTGTTAAAGCTGGTTACTATTTGCCTAAAGCA +
Preference number: 3 (lower is better)
Translates to: CVAMSNSVNLDL*LVKAGYYLPKA
Trigger: TGCTTTAGGCAAATAGTAACCAGCTTTAACAAGGCAGAGGTCTAGATTTACGCTGTTTGACATTGCCACACA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
3UTR GCA 72 bp AACAGCATTTCTAAAGCCGATGGAAATAACTGGCAGTaGCCTATTTTGAAAGGTAACGGTGAAATCTTCCAG +
Preference number: 3 (lower is better)
Translates to: NSISKADGNNWQ*PILKGNGEIFQ
Trigger: CTGGAAGATTTCACCGTTACCTTTCAAAATAGGGCACTGCCAGTTATTTCCATCGGCTTTAGAAATGCTGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112050.2
3UTR-3UTR CAA 90 bp AATCCCAAAAGACCTACTGGAAGATCCAAATACCTGGCATTCTGGGAAAAGAAAAAAGCTGGTTACTATTaGCCTAAAGCACAAACAATG +
Preference number: 3 (lower is better)
Translates to: NPKRPTGRSKYLAFWEKKKAGYY*PKAQTM
Trigger: CATTGTTTGTGCTTTAGGCAAATAGTAACCAGCTTT...TTTCTTTTCCCAGAATGCCAGGTATTTGGATCTTCCAGTAGGTCTTTTGGGATT
39% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
3UTR TCA 72 bp CTGGTTACTATTTGCCTAAAGCACAAACAATGCACTTaGCATATTTTCCACTGCTTAAGGAAAAGAAAGCCT +
Preference number: 3 (lower is better)
Translates to: LVTICLKHKQCT*HIFHCLRKRKP
Trigger: AGGCTTTCTTTTCCTTAAGCAGTGGAAAATATGTCAAGTGCATTGTTTGTGCTTTAGGCAAATAGTAACCAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
3UTR TCA 72 bp ATCCACACTGAGTATCCCACAATGAGTATCCTGCAGTaGAAATCTCTACAAGTTAACTCACATATCCATATA +
Preference number: 3 (lower is better)
Translates to: IHTEYPTMSILQ*KSLQVNSHIHI
Trigger: TATATGGATATGTGAGTTAACTTGTAGAGATTTTCACTGCAGGATACTCATTGTGGGATACTCAGTGTGGAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
3UTR CCA 72 bp GAAATTAGAGGAATGTATGGCCACAAACAAATCACCTaGAGAAATCAATTCCAAAGCAATCAAACTGCAATC +
Preference number: 3 (lower is better)
Translates to: EIRGMYGHKQIT*RNQFQSNQTAI
Trigger: GATTGCAGTTTGATTGCTTTGGAATTGATTTCTCCAGGTGATTTGTTTGTGGCCATACATTCCTCTAATTTC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112050.2
CDS-3UTR CCA 90 bp TCCCTACCTCTCTCCCTCCCAGATGGCGGGATTACAGCTGTGTCCCACCCGTCTCCCCCACAGCCAAGCTaGGCGACTAAGGACAACAGC +
Preference number: 4 (lower is better)
Translates to: SLPLSLPDGGITAVSHPSPPQPS*ATKDNS
Trigger: GCTGTTGTCCTTAGTCGCCCAGCTTGGCTGTGGGGG...AGACGGGTGGGACACAGCTGTAATCCCGCCATCTGGGAGGGAGAGAGGTAGGGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112050.2
CDS-3UTR GCA 90 bp CCCCAGGACGTAGATAAGGTCAGGGATGACGGTGGTGTCTACAGTCCCTGGACTACCTTGGACTCTCTCTaGTGCCCAGTACTTCCCCGA +
Preference number: 4 (lower is better)
Translates to: PQDVDKVRDDGGVYSPWTTLDSL*CPVLPR
Trigger: TCGGGGAAGTACTGGGCAGCAGAGAGAGTCCAAGGT...AGTCCAGGGACTGTAGACACCACCGTCATCCCTGACCTTATCTACGTCCTGGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112050.2
CDS-3UTR GCA 90 bp TCCCTACCTCTCTCCCTCCCAGATGGCGGGATTACAGCTGTGTCCCACCCGTCTGTCCATGCCCAAAAGTaGTTCCTCCTTAGAAATGTC +
Preference number: 4 (lower is better)
Translates to: SLPLSLPDGGITAVSHPSVHAQK*FLLRNV
Trigger: GACATTTCTAAGGAGGAAGCACTTTTGGGCATGGAC...AGACGGGTGGGACACAGCTGTAATCCCGCCATCTGGGAGGGAGAGAGGTAGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112050.2
CDS-3UTR CCA 90 bp GATGGCTCACAGCCATCTATAACTCCAGTTCAAGAGGATCTCACACCCTCTGAGCCCCCACAGCCAAGCTaGGCGACTAAGGACAACAGC +
Preference number: 4 (lower is better)
Translates to: DGSQPSITPVQEDLTPSEPPQPS*ATKDNS
Trigger: GCTGTTGTCCTTAGTCGCCCAGCTTGGCTGTGGGGG...CTCAGAGGGTGTGAGATCCTCTTGAACTGGAGTTATAGATGGCTGTGAGCCATC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
CDS-3UTR TCA 90 bp TCACAGCCATCTATAACTCCAGTTCAAGAGGATCTCACACCCTCTGAGGGCACCTCTCAAGGCCCAGCCTaGCAAGGTCCATGCCCAAAA +
Preference number: 4 (lower is better)
Translates to: SQPSITPVQEDLTPSEGTSQGPA*QGPCPK
Trigger: TTTTGGGCATGGACCTTGTCAGGCTGGGCCTTGAGA...GGTGCCCTCAGAGGGTGTGAGATCCTCTTGAACTGGAGTTATAGATGGCTGTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
CDS-3UTR TCA 90 bp TGGGTTTGGTCCCCAGCACCCACACGATGGCTCACAGCCATCTATAACTCCAGTGTTGCAGTAAAGAGGTaGATGCAAGGAAGGCTGGGA +
Preference number: 4 (lower is better)
Translates to: WVWSPAPTRWLTAIYNSSVAVKR*MQGRLG
Trigger: TCCCAGCCTTCCTTGCATTCACCTCTTTACTGCAAC...ACTGGAGTTATAGATGGCTGTGAGCCATCGTGTGGGTGCTGGGGACCAAACCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
CDS-3UTR CCA 90 bp TGGGTTTGGTCCCCAGCACCCACACGATGGCTCACAGCCATCTATAACTCCAGTATATTACGAACGCCTTaGACTCTCTCTGCTGCCCAG +
Preference number: 4 (lower is better)
Translates to: WVWSPAPTRWLTAIYNSSILRTP*TLSAAQ
Trigger: CTGGGCAGCAGAGAGAGTCCAAGGCGTTCGTAATAT...ACTGGAGTTATAGATGGCTGTGAGCCATCGTGTGGGTGCTGGGGACCAAACCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
3UTR CAA 72 bp GTGAAATCTTCCAGCACAGGCTCCCGTGACGTCCTTTaGCCCCCAGAAGCTCACAATGGTTTTCCTTCCTCT +
Preference number: 4 (lower is better)
Translates to: VKSSSTGSRDVL*PPEAHNGFPSS
Trigger: AGAGGAAGGAAAACCATTGTGAGCTTCTGGGGGCAAAAGGACGTCACGGGAGCCTGTGCTGGAAGATTTCAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112050.2
CDS-3UTR GCA 90 bp GGCTCACAGCCATCTATAACTCCAGTTCAAGAGGATCTCACACCCTCTGAGGGCAACAGAAACCATGCTTaGCGTGGTCAGGAATTCTCC +
Preference number: 4 (lower is better)
Translates to: GSQPSITPVQEDLTPSEGNRNHA*RGQEFS
Trigger: GGAGAATTCCTGACCACGGCAAGCATGGTTTCTGTT...GCCCTCAGAGGGTGTGAGATCCTCTTGAACTGGAGTTATAGATGGCTGTGAGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
CDS-3UTR GCA 90 bp CAGTTCAAGAGGATCTCACACCCTCTGAGGGCACCAGGCATGTGCTTCATACAGGACATATGGCTTCTTTaGCACTGGCCTTTCAGGTTC +
Preference number: 4 (lower is better)
Translates to: QFKRISHPLRAPGMCFIQDIWLL*HWPFRF
Trigger: GAACCTGAAAGGCCAGTGGCAAAGAAGCCATATGTC...CTGTATGAAGCACATGCCTGGTGCCCTCAGAGGGTGTGAGATCCTCTTGAACTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
CDS-3UTR CCA 90 bp TGGGTTTGGTCCCCAGCACCCACACGATGGCTCACAGCCATCTATAACTCCAGTGTAGTTCCTCATGTCTaGATGTTCCCGGTCAATCTT +
Preference number: 4 (lower is better)
Translates to: WVWSPAPTRWLTAIYNSSVVPHV*MFPVNL
Trigger: AAGATTGACCGGGAACATCCAGACATGAGGAACTAC...ACTGGAGTTATAGATGGCTGTGAGCCATCGTGTGGGTGCTGGGGACCAAACCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
CDS-3UTR TCA 90 bp TCACAGCCATCTATAACTCCAGTTCAAGAGGATCTCACACCCTCTGAGGGCACCAACTGTTGTAATAGCTaGACTCTTTGCCCTCTGCGC +
Preference number: 4 (lower is better)
Translates to: SQPSITPVQEDLTPSEGTNCCNS*TLCPLR
Trigger: GCGCAGAGGGCAAAGAGTTCAGCTATTACAACAGTT...GGTGCCCTCAGAGGGTGTGAGATCCTCTTGAACTGGAGTTATAGATGGCTGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
CDS-3UTR GCA 90 bp AGGATCTCACACCCTCTGAGGGCACCAGGCATGTGCTTCATACAGATATACATGCAGCCTCATTCCCAATaGAGACTCCATGCTCATTGG +
Preference number: 4 (lower is better)
Translates to: RISHPLRAPGMCFIQIYMQPHSQ*RLHAHW
Trigger: CCAATGAGCATGGAGTCTGCATTGGGAATGAGGCTG...CATGTATATCTGTATGAAGCACATGCCTGGTGCCCTCAGAGGGTGTGAGATCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
CDS-3UTR GCA 90 bp CAGTTCAAGAGGATCTCACACCCTCTGAGGGCACCAGGCATGTGCTTCATACAGGTCCATGCCCAAAAGTaGTTCCTCCTTAGAAATGTC +
Preference number: 4 (lower is better)
Translates to: QFKRISHPLRAPGMCFIQVHAQK*FLLRNV
Trigger: GACATTTCTAAGGAGGAAGCACTTTTGGGCATGGAC...CTGTATGAAGCACATGCCTGGTGCCCTCAGAGGGTGTGAGATCCTCTTGAACTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
CDS-3UTR CCA 90 bp CAGTTCAAGAGGATCTCACACCCTCTGAGGGCACCAGGCATGTGCTTCATACAGGCGCAGTTTCCACCTTaGCCATACTTTTCTAGTAAG +
Preference number: 4 (lower is better)
Translates to: QFKRISHPLRAPGMCFIQAQFPP*PYFSSK
Trigger: CTTACTAGAAAAGTATGGCCAAGGTGGAAACTGCGC...CTGTATGAAGCACATGCCTGGTGCCCTCAGAGGGTGTGAGATCCTCTTGAACTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
CDS-3UTR CCA 90 bp TGGGTTTGGTCCCCAGCACCCACACGATGGCTCACAGCCATCTATAACTCCAGTGTTCCCGGTCAATCTTaGTTGTTATGGAAAGCTGAT +
Preference number: 4 (lower is better)
Translates to: WVWSPAPTRWLTAIYNSSVPGQS*LLWKAD
Trigger: ATCAGCTTTCCATAACAACCAAGATTGACCGGGAAC...ACTGGAGTTATAGATGGCTGTGAGCCATCGTGTGGGTGCTGGGGACCAAACCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
3UTR CAA 72 bp GCTAGCAGCAACTCACACGTGGATGCTTACTCACAATaGCCAAAATCTGGAAGCAGCCAAGAGGCTTTCTGG +
Preference number: 4 (lower is better)
Translates to: ASSNSHVDAYSQ*PKSGSSQEAFW
Trigger: CCAGAAAGCCTCTTGGCTGCTTCCAGATTTTGGCAATTGTGAGTAAGCATCCACGTGTGAGTTGCTGCTAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
CDS-3UTR TCA 90 bp CAGTTCAAGAGGATCTCACACCCTCTGAGGGCACCAGGCATGTGCTTCATACAGTCCACTCTGGAGGATTaGTTCTATCTCTTCAGATAC +
Preference number: 4 (lower is better)
Translates to: QFKRISHPLRAPGMCFIQSTLED*FYLFRY
Trigger: GTATCTGAAGAGATAGAATCAATCCTCCAGAGTGGA...CTGTATGAAGCACATGCCTGGTGCCCTCAGAGGGTGTGAGATCCTCTTGAACTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
CDS-3UTR GCA 90 bp GTTTTCCTTCCTCTGATGTTCACAGTGCCCCTGGGTCCACATCATTCATCGTTCCCAATGCAGACTCCATaGTCATTGGCACCCATTTCT +
Preference number: 4 (lower is better)
Translates to: VFLPLMFTVPLGPHHSSFPMQTP*SLAPIS
Trigger: AGAAATGGGTGCCAATGAGCATGGAGTCTGCATTGG...GAACGATGAATGATGTGGACCCAGGGGCACTGTGAACATCAGAGGAAGGAAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112050.2
CDS-3UTR GCA 90 bp GGCTCACAGCCATCTATAACTCCAGTTCAAGAGGATCTCACACCCTCTGAGGGCGTAAAACAGAAACCATaGTTGCCGTGGTCAGGAATT +
Preference number: 4 (lower is better)
Translates to: GSQPSITPVQEDLTPSEGVKQKP*LPWSGI
Trigger: AATTCCTGACCACGGCAAGCATGGTTTCTGTTTTAC...GCCCTCAGAGGGTGTGAGATCCTCTTGAACTGGAGTTATAGATGGCTGTGAGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
CDS-3UTR CCA 90 bp AGGATCTCACACCCTCTGAGGGCACCAGGCATGTGCTTCATACAGATATACATGAAACCATGCTTGCCGTaGTCAGGAATTCTCCCTTCA +
Preference number: 4 (lower is better)
Translates to: RISHPLRAPGMCFIQIYMKPCLP*SGILPS
Trigger: TGAAGGGAGAATTCCTGACCACGGCAAGCATGGTTT...CATGTATATCTGTATGAAGCACATGCCTGGTGCCCTCAGAGGGTGTGAGATCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
CDS-3UTR TCA 90 bp CCTCCGCTAGGATGTTTACAGACATCCCTTATCTCCTTTGTAAAACTAGGAGATTCTCAAGGCCCAGCCTaGCAAGGTCCATGCCCAAAA +
Preference number: 4 (lower is better)
Translates to: PPLGCLQTSLISFVKLGDSQGPA*QGPCPK
Trigger: TTTTGGGCATGGACCTTGTCAGGCTGGGCCTTGAGA...ATCTCCTAGTTTTACAAAGGAGATAAGGGATGTCTGTAAACATCCTAGCGGAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112050.2
CDS-3UTR TCA 90 bp GGCTCACAGCCATCTATAACTCCAGTTCAAGAGGATCTCACACCCTCTGAGGGCAGGTTCAAATGTTGGTaGTTTTGTATCCAACAGTGG +
Preference number: 4 (lower is better)
Translates to: GSQPSITPVQEDLTPSEGRFKCW*FCIQQW
Trigger: CCACTGTTGGATACAAAATCACCAACATTTGAACCT...GCCCTCAGAGGGTGTGAGATCCTCTTGAACTGGAGTTATAGATGGCTGTGAGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
CDS-3UTR GCA 90 bp AATCCCAAAAGACCTACTGGAAGATCCAAATACCTGGCATTCTGGGAAAAGAAAGCCTTGGACTCTCTCTaGTGCCCAGTACTTCCCCGA +
Preference number: 4 (lower is better)
Translates to: NPKRPTGRSKYLAFWEKKALDSL*CPVLPR
Trigger: TCGGGGAAGTACTGGGCAGCAGAGAGAGTCCAAGGC...TTTCTTTTCCCAGAATGCCAGGTATTTGGATCTTCCAGTAGGTCTTTTGGGATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
CDS-3UTR CCA 90 bp AGGATCTCACACCCTCTGAGGGCACCAGGCATGTGCTTCATACAGATATACATGTGGCTTCTTTGCCACTaGCCTTTCAGGTTCAAATGT +
Preference number: 4 (lower is better)
Translates to: RISHPLRAPGMCFIQIYMWLLCH*PFRFKC
Trigger: ACATTTGAACCTGAAAGGCCAGTGGCAAAGAAGCCA...CATGTATATCTGTATGAAGCACATGCCTGGTGCCCTCAGAGGGTGTGAGATCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
CDS-3UTR TCA 90 bp GATGGCTCACAGCCATCTATAACTCCAGTTCAAGAGGATCTCACACCCTCTGAGCTAGTAAGTCAACAATaGCATCCAGAGCTTTCTCAG +
Preference number: 4 (lower is better)
Translates to: DGSQPSITPVQEDLTPSELVSQQ*HPELSQ
Trigger: CTGAGAAAGCTCTGGATGTCATTGTTGACTTACTAG...CTCAGAGGGTGTGAGATCCTCTTGAACTGGAGTTATAGATGGCTGTGAGCCATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
CDS-3UTR CCA 90 bp AATGGTTTTCCTTCCTCTGATGTTCACAGTGCCCCTGGGTCCACATCATTCATCGCGCAGTTTCCACCTTaGCCATACTTTTCTAGTAAG +
Preference number: 4 (lower is better)
Translates to: NGFPSSDVHSAPGSTSFIAQFPP*PYFSSK
Trigger: CTTACTAGAAAAGTATGGCCAAGGTGGAAACTGCGC...GATGAATGATGTGGACCCAGGGGCACTGTGAACATCAGAGGAAGGAAAACCATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000112050.2
CDS-3UTR TCA 90 bp AATGGTTTTCCTTCCTCTGATGTTCACAGTGCCCCTGGGTCCACATCATTCATCCTAGTAAGTCAACAATaGCATCCAGAGCTTTCTCAG +
Preference number: 4 (lower is better)
Translates to: NGFPSSDVHSAPGSTSFILVSQQ*HPELSQ
Trigger: CTGAGAAAGCTCTGGATGTCATTGTTGACTTACTAG...GATGAATGATGTGGACCCAGGGGCACTGTGAACATCAGAGGAAGGAAAACCATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112050.2
3UTR CAA 72 bp AGGGAGAGAAAAAGCCAAACAATTAGAGCCACAAGTTaGCTTGCTGCTCAGCCAAATCTTGACAGAGGTCAC +
Preference number: 4 (lower is better)
Translates to: RERKSQTIRATS*LAAQPNLDRGH
Trigger: GTGACCTCTGTCAAGATTTGGCTGAGCAGCAAGCAAACTTGTGGCTCTAATTGTTTGGCTTTTTCTCTCCCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
3UTR CAA 72 bp TCTAAAGCCGATGGAAATAACTGGCAGTGCCCTATTTaGAAAGGTAACGGTGAAATCTTCCAGCACAGGCTC +
Preference number: 4 (lower is better)
Translates to: SKADGNNWQCPI*KGNGEIFQHRL
Trigger: GAGCCTGTGCTGGAAGATTTCACCGTTACCTTTCAAAATAGGGCACTGCCAGTTATTTCCATCGGCTTTAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112050.2
CDS-3UTR TCA 90 bp CAGAATGATAGCATAGCCCATGCGTCATGTTTATGTTTCATGCTTTATGCAACCGGAAGGCTGGGATCCTaGGGTAAAACAGAAACCATG +
Preference number: 4 (lower is better)
Translates to: QNDSIAHASCLCFMLYATGRLGS*GKTETM
Trigger: CATGGTTTCTGTTTTACCTCAGGATCCCAGCCTTCC...GGTTGCATAAAGCATGAAACATAAACATGACGCATGGGCTATGCTATCATTCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
CDS-3UTR TCA 90 bp GATGGCTCACAGCCATCTATAACTCCAGTTCAAGAGGATCTCACACCCTCTGAGTGTATCCAACAGTGGTaGAATGTGTGGTACAAATAT +
Preference number: 4 (lower is better)
Translates to: DGSQPSITPVQEDLTPSECIQQW*NVWYKY
Trigger: ATATTTGTACCACACATTTCACCACTGTTGGATACA...CTCAGAGGGTGTGAGATCCTCTTGAACTGGAGTTATAGATGGCTGTGAGCCATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
CDS-3UTR TCA 90 bp CATGGCCAAGATCTACACACCTCAGCAAAGAAGGTATACAAATGGGAAATAAGCGTCTTCTGTCAGGCTTaGCATATGGCTTCTTTGCCA +
Preference number: 4 (lower is better)
Translates to: HGQDLHTSAKKVYKWEISVFCQA*HMASLP
Trigger: TGGCAAAGAAGCCATATGTCAAGCCTGACAGAAGAC...GCTTATTTCCCATTTGTATACCTTCTTTGCTGAGGTGTGTAGATCTTGGCCATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
CDS-3UTR GCA 90 bp CATGGCCAAGATCTACACACCTCAGCAAAGAAGGTATACAAATGGGAAATAAGCCCAATGCAGACTCCATaGTCATTGGCACCCATTTCT +
Preference number: 4 (lower is better)
Translates to: HGQDLHTSAKKVYKWEISPMQTP*SLAPIS
Trigger: AGAAATGGGTGCCAATGAGCATGGAGTCTGCATTGG...GCTTATTTCCCATTTGTATACCTTCTTTGCTGAGGTGTGTAGATCTTGGCCATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
CDS-3UTR GCA 90 bp AGGATCTCACACCCTCTGAGGGCACCAGGCATGTGCTTCATACAGATATACATGCAAATCATTATGAACTaGAGCTGGACAGTAAATTAC +
Preference number: 4 (lower is better)
Translates to: RISHPLRAPGMCFIQIYMQIIMN*SWTVNY
Trigger: GTAATTTACTGTCCAGCTGCAGTTCATAATGATTTG...CATGTATATCTGTATGAAGCACATGCCTGGTGCCCTCAGAGGGTGTGAGATCCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
CDS-3UTR GCA 90 bp CATGGCCAAGATCTACACACCTCAGCAAAGAAGGTATACAAATGGGAAATAAGCAATCAAATTCTTCTTTaGCATCCCACCAGCCCCTCT +
Preference number: 4 (lower is better)
Translates to: HGQDLHTSAKKVYKWEISNQILL*HPTSPS
Trigger: AGAGGGGCTGGTGGGATGGCAAAGAAGAATTTGATT...GCTTATTTCCCATTTGTATACCTTCTTTGCTGAGGTGTGTAGATCTTGGCCATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
CDS-3UTR CCA 90 bp AATCCCAAAAGACCTACTGGAAGATCCAAATACCTGGCATTCTGGGAAAAGAAAGAATGCAAGGAAGGCTaGGATCCTGAGGTAAAACAG +
Preference number: 4 (lower is better)
Translates to: NPKRPTGRSKYLAFWEKKECKEG*DPEVKQ
Trigger: CTGTTTTACCTCAGGATCCCAGCCTTCCTTGCATTC...TTTCTTTTCCCAGAATGCCAGGTATTTGGATCTTCCAGTAGGTCTTTTGGGATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
3UTR CAA 72 bp TATCATGGCTTACAGAGGCATGGTGAAAGCTGTGTATaGAAGAAGCCAATCCCAAAAGACCTACTGGAAGAT +
Preference number: 4 (lower is better)
Translates to: YHGLQRHGESCV*KKPIPKDLLED
Trigger: ATCTTCCAGTAGGTCTTTTGGGATTGGCTTCTTCAATACACAGCTTTCACCATGCCTCTGTAAGCCATGATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
3UTR CAA 72 bp AGAGAAAAAGCCAAACAATTAGAGCCACAAGTTTGCTaGCTGCTCAGCCAAATCTTGACAGAGGTCACTTTT +
Preference number: 4 (lower is better)
Translates to: REKAKQLEPQVC*LLSQILTEVTF
Trigger: AAAAGTGACCTCTGTCAAGATTTGGCTGAGCAGCAAGCAAACTTGTGGCTCTAATTGTTTGGCTTTTTCTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
CDS-3UTR GCA 90 bp CAGACATCCCTTATCTCCTTTGTAAAACTAGGAGATTCAAGATGTCGGTTCACACAAATCATTATGAACTaGAGCTGGACAGTAAATTAC +
Preference number: 4 (lower is better)
Translates to: QTSLISFVKLGDSRCRFTQIIMN*SWTVNY
Trigger: GTAATTTACTGTCCAGCTGCAGTTCATAATGATTTG...TGTGAACCGACATCTTGAATCTCCTAGTTTTACAAAGGAGATAAGGGATGTCTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112050.2
CDS-3UTR GCA 90 bp AATCCCAAAAGACCTACTGGAAGATCCAAATACCTGGCATTCTGGGAAAAGAAATGTCCAATATTGTCTTaGCTTTTTCCTTACTGTTAC +
Preference number: 4 (lower is better)
Translates to: NPKRPTGRSKYLAFWEKKCPILS*LFPYCY
Trigger: GTAACAGTAAGGAAAAAGGCAAGACAATATTGGACA...TTTCTTTTCCCAGAATGCCAGGTATTTGGATCTTCCAGTAGGTCTTTTGGGATT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
CDS-3UTR CAA 90 bp TGGGTTTGGTCCCCAGCACCCACACGATGGCTCACAGCCATCTATAACTCCAGTAATATTACGAACGCCTaGGACTCTCTCTGCTGCCCA +
Preference number: 5 (lower is better)
Translates to: WVWSPAPTRWLTAIYNSSNITNA*DSLCCP
Trigger: TGGGCAGCAGAGAGAGTCCAAGGCGTTCGTAATATT...ACTGGAGTTATAGATGGCTGTGAGCCATCGTGTGGGTGCTGGGGACCAAACCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
CDS GCA 90 bp GTCAGCTCTCTCAAGGCCCAGCCTGACAAGGTCCATGCCCAAAAGTaGTTCCTCCTTAGAAATGTCTTCTCTTCCCCATACAGCCTCATT +
Preference number: 5 (lower is better)
Translates to: VSSLKAQPDKVHAQK*FLLRNVFSSPYSLI
Trigger: AATGAGGCTGTATGGGGAAGAGAAGACATTTCTAAGGAGGAAGCACTTTTGGGCATGGACCTTGTCAGGCTGGGCCTTGAGAGAGCTGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090811.11
ENSMUST00000112050.2
CDS-3UTR CAA 90 bp GGCTCACAGCCATCTATAACTCCAGTTCAAGAGGATCTCACACCCTCTGAGGGCCCCTATTTCCTACTGTaGCTGGAGGTAATGCCACAA +
Preference number: 5 (lower is better)
Translates to: GSQPSITPVQEDLTPSEGPYFLL*LEVMPQ
Trigger: TTGTGGCATTACCTCCAGCAACAGTAGGAAATAGGG...GCCCTCAGAGGGTGTGAGATCCTCTTGAACTGGAGTTATAGATGGCTGTGAGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
CDS-3UTR CAA 90 bp CCTTCCTCTGATGTTCACAGTGCCCCTGGGTCCACATCATTCATCGTTCACCCACCCTATTTCCTACTGTaGCTGGAGGTAATGCCACAA +
Preference number: 5 (lower is better)
Translates to: PSSDVHSAPGSTSFIVHPPYFLL*LEVMPQ
Trigger: TTGTGGCATTACCTCCAGCAACAGTAGGAAATAGGG...TGGGTGAACGATGAATGATGTGGACCCAGGGGCACTGTGAACATCAGAGGAAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112050.2
CDS-3UTR CAA 90 bp CAGTTCAAGAGGATCTCACACCCTCTGAGGGCACCAGGCATGTGCTTCATACAGCCCGGTCAATCTTGGTaGTTATGGAAAGCTGATTGG +
Preference number: 5 (lower is better)
Translates to: QFKRISHPLRAPGMCFIQPGQSW*LWKADW
Trigger: CCAATCAGCTTTCCATAACAACCAAGATTGACCGGG...CTGTATGAAGCACATGCCTGGTGCCCTCAGAGGGTGTGAGATCCTCTTGAACTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
CDS-3UTR CAA 90 bp CAGTTCAAGAGGATCTCACACCCTCTGAGGGCACCAGGCATGTGCTTCATACAGAAATCAAATTCTTCTTaGCCATCCCACCAGCCCCTC +
Preference number: 5 (lower is better)
Translates to: QFKRISHPLRAPGMCFIQKSNSS*PSHQPL
Trigger: GAGGGGCTGGTGGGATGGCAAAGAAGAATTTGATTT...CTGTATGAAGCACATGCCTGGTGCCCTCAGAGGGTGTGAGATCCTCTTGAACTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
CDS CCA 90 bp TTTGCCATCCCACCAGCCCCTCTGCTTAGCGTAGTTCCTCATGTCTaGATGTTCCCGGTCAATCTTGGTTGTTATGGAAAGCTGATTGGA +
Preference number: 5 (lower is better)
Translates to: FAIPPAPLLSVVPHV*MFPVNLGCYGKLIG
Trigger: TCCAATCAGCTTTCCATAACAACCAAGATTGACCGGGAACATCCAGACATGAGGAACTACGCTAAGCAGAGGGGCTGGTGGGATGGCAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
CDS TCA 90 bp TCTGTGTTTATCCAGAAGCTTGTAGCCCTGGCAGTACCTGCTTGGTaGAGTCATCATAGCAGCCGTGTCAATGTAAGAATAGGCCGCAGT +
Preference number: 5 (lower is better)
Translates to: SVFIQKLVALAVPAW*SHHSSRVNVRIGRS
Trigger: ACTGCGGCCTATTCTTACATTGACACGGCTGCTATGATGACTTCACCAAGCAGGTACTGCCAGGGCTACAAGCTTCTGGATAAACACAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
CDS-3UTR CAA 90 bp GATGGCTCACAGCCATCTATAACTCCAGTTCAAGAGGATCTCACACCCTCTGAGGGCCTCTTGATGTTTTaGGTAGAGTGGGTGTCTTCT +
Preference number: 5 (lower is better)
Translates to: DGSQPSITPVQEDLTPSEGLLMF*VEWVSS
Trigger: AGAAGACACCCACTCTACCAAAAACATCAAGAGGCC...CTCAGAGGGTGTGAGATCCTCTTGAACTGGAGTTATAGATGGCTGTGAGCCATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
CDS-3UTR CAA 90 bp TGGGTTTGGTCCCCAGCACCCACACGATGGCTCACAGCCATCTATAACTCCAGTCAAATGTTGGTGATTTaGTATCCAACAGTGGTGAAA +
Preference number: 5 (lower is better)
Translates to: WVWSPAPTRWLTAIYNSSQMLVI*YPTVVK
Trigger: TTTCACCACTGTTGGATACAAAATCACCAACATTTG...ACTGGAGTTATAGATGGCTGTGAGCCATCGTGTGGGTGCTGGGGACCAAACCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
CDS-3UTR CAA 90 bp AGGATCTCACACCCTCTGAGGGCACCAGGCATGTGCTTCATACAGATATACATGTCCAGCTTCCTCATCTaGTCCAATATTGTCTTGCCT +
Preference number: 5 (lower is better)
Translates to: RISHPLRAPGMCFIQIYMSSFLI*SNIVLP
Trigger: AGGCAAGACAATATTGGACAAGATGAGGAAGCTGGA...CATGTATATCTGTATGAAGCACATGCCTGGTGCCCTCAGAGGGTGTGAGATCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
CDS TCA 90 bp AGGCCTCTTGATGTTTTTGGTAGAGTGGGTGTCTTCTGTCAGGCTTaGCATATGGCTTCTTTGCCACTGGCCTTTCAGGTTCAAATGTTG +
Preference number: 5 (lower is better)
Translates to: RPLDVFGRVGVFCQA*HMASLPLAFQVQML
Trigger: CAACATTTGAACCTGAAAGGCCAGTGGCAAAGAAGCCATATGTCAAGCCTGACAGAAGACACCCACTCTACCAAAAACATCAAGAGGCCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
CDS TCA 90 bp AAACAGAAACCATGCTTGCCGTGGTCAGGAATTCTCCCTTCATGTTaGTGCCACTGGGTCTGTCTCGAAGAATTTCCATCATCGTTTCAA +
Preference number: 5 (lower is better)
Translates to: KQKPCLPWSGILPSC*CHWVCLEEFPSSFQ
Trigger: TTGAAACGATGATGGAAATTCTTCGAGACAGACCCAGTGGCATCAACATGAAGGGAGAATTCCTGACCACGGCAAGCATGGTTTCTGTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
CDS CCA 90 bp CGTAGTTCCTCATGTCTGGATGTTCCCGGTCAATCTTGGTTGTTATaGAAAGCTGATTGGAAATATTACGAACGCCTTGGACTCTCTCTG +
Preference number: 5 (lower is better)
Translates to: RSSSCLDVPGQSWLL*KADWKYYERLGLSL
Trigger: CAGAGAGAGTCCAAGGCGTTCGTAATATTTCCAATCAGCTTTCCATAACAACCAAGATTGACCGGGAACATCCAGACATGAGGAACTACG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
CDS CCA 90 bp ACTGTTACTTATCATTTCCAAGGCCTCTTGATGTTTTTGGTAGAGTaGGTGTCTTCTGTCAGGCTTGACATATGGCTTCTTTGCCACTGG +
Preference number: 5 (lower is better)
Translates to: TVTYHFQGLLMFLVE*VSSVRLDIWLLCHW
Trigger: CCAGTGGCAAAGAAGCCATATGTCAAGCCTGACAGAAGACACCCACTCTACCAAAAACATCAAGAGGCCTTGGAAATGATAAGTAACAGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
CDS-3UTR CAA 90 bp AGGATCTCACACCCTCTGAGGGCACCAGGCATGTGCTTCATACAGATATACATGTCATCTTGTCCAATATaGTCTTGCCTTTTTCCTTAC +
Preference number: 5 (lower is better)
Translates to: RISHPLRAPGMCFIQIYMSSCPI*SCLFPY
Trigger: GTAAGGAAAAAGGCAAGACAATATTGGACAAGATGA...CATGTATATCTGTATGAAGCACATGCCTGGTGCCCTCAGAGGGTGTGAGATCCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
CDS-3UTR CAA 90 bp ATATACTCCAAGGCATTAACTACCAACCTGAGTATCCACACTGAGTATCCCACACATTTCCAAGGCCTCTaGATGTTTTTGGTAGAGTGG +
Preference number: 5 (lower is better)
Translates to: IYSKALTTNLSIHTEYPTHFQGL*MFLVEW
Trigger: CCACTCTACCAAAAACATCAAGAGGCCTTGGAAATG...TGTGGGATACTCAGTGTGGATACTCAGGTTGGTAGTTAATGCCTTGGAGTATAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
CDS-3UTR CAA 90 bp ACAAAGAAACACACACAAGAAGAAATTAGAGGAATGTATGGCCACAAACAAATCGTAGCTGTTCACACCTaGGACTCTCTCTGCTGCCCA +
Preference number: 5 (lower is better)
Translates to: TKKHTQEEIRGMYGHKQIVAVHT*DSLCCP
Trigger: TGGGCAGCAGAGAGAGTCCAAGGTGTGAACAGCTAC...GATTTGTTTGTGGCCATACATTCCTCTAATTTCTTCTTGTGTGTGTTTCTTTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112050.2
CDS TCA 90 bp CAGCATATGTTTCAGGAACTTGATCAACTTCTATATAAGTACACTTaGGACGTTTTTCCAAATCATTATGAACTGCAGCTGGACAGTAAA +
Preference number: 5 (lower is better)
Translates to: QHMFQELDQLLYKYT*DVFPNHYELQLDSK
Trigger: TTTACTGTCCAGCTGCAGTTCATAATGATTTGGAAAAACGTCTCAAGTGTACTTATATAGAAGTTGATCAAGTTCCTGAAACATATGCTG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000090811.11
ENSMUST00000112050.2
CDS GCA 72 bp CTGATTGGAAATATTACGAACGCCTTGGACTCTCTCTaGTGCCCAGTACTTCCCCGACGTCTCCAGGATCCA +
Preference number: 6 (lower is better)
Translates to: LIGNITNALDSL*CPVLPRRLQDP
Trigger: TGGATCCTGGAGACGTCGGGGAAGTACTGGGCAGCAGAGAGAGTCCAAGGCGTTCGTAATATTTCCAATCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
CDS GCA 72 bp CTCAAGGCCCAGCCTGACAAGGTCCATGCCCAAAAGTaGTTCCTCCTTAGAAATGTCTTCTCTTCCCCATAC +
Preference number: 6 (lower is better)
Translates to: LKAQPDKVHAQK*FLLRNVFSSPY
Trigger: GTATGGGGAAGAGAAGACATTTCTAAGGAGGAAGCACTTTTGGGCATGGACCTTGTCAGGCTGGGCCTTGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090811.11
ENSMUST00000112050.2
CDS CCA 72 bp CCACCAGCCCCTCTGCTTAGCGTAGTTCCTCATGTCTaGATGTTCCCGGTCAATCTTGGTTGTTATGGAAAG +
Preference number: 6 (lower is better)
Translates to: PPAPLLSVVPHV*MFPVNLGCYGK
Trigger: CTTTCCATAACAACCAAGATTGACCGGGAACATCCAGACATGAGGAACTACGCTAAGCAGAGGGGCTGGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
CDS TCA 72 bp CCATGCTTGCCGTGGTCAGGAATTCTCCCTTCATGTTaGTGCCACTGGGTCTGTCTCGAAGAATTTCCATCA +
Preference number: 6 (lower is better)
Translates to: PCLPWSGILPSC*CHWVCLEEFPS
Trigger: TGATGGAAATTCTTCGAGACAGACCCAGTGGCATCAACATGAAGGGAGAATTCCTGACCACGGCAAGCATGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
CDS CAA 72 bp ACCATGCTTGCCGTGGTCAGGAATTCTCCCTTCATGTaGATGCCACTGGGTCTGTCTCGAAGAATTTCCATC +
Preference number: 6 (lower is better)
Translates to: TMLAVVRNSPFM*MPLGLSRRISI
Trigger: GATGGAAATTCTTCGAGACAGACCCAGTGGCATCAACATGAAGGGAGAATTCCTGACCACGGCAAGCATGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
CDS TCA 72 bp CATTCCTGTCAGCTATCAGGAAACTGTTGTAATAGCTaGACTCTTTGCCCTCTGCGCAGTTTCCACCTTGGC +
Preference number: 6 (lower is better)
Translates to: HSCQLSGNCCNS*TLCPLRSFHLG
Trigger: GCCAAGGTGGAAACTGCGCAGAGGGCAAAGAGTTCAGCTATTACAACAGTTTCCTGATAGCTGACAGGAATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090811.11
ENSMUST00000112050.2
CDS TCA 72 bp ATCCAGAAGCTTGTAGCCCTGGCAGTACCTGCTTGGTaGAGTCATCATAGCAGCCGTGTCAATGTAAGAATA +
Preference number: 6 (lower is better)
Translates to: IQKLVALAVPAW*SHHSSRVNVRI
Trigger: TATTCTTACATTGACACGGCTGCTATGATGACTTCACCAAGCAGGTACTGCCAGGGCTACAAGCTTCTGGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
CDS TCA 72 bp GATGTTTTTGGTAGAGTGGGTGTCTTCTGTCAGGCTTaGCATATGGCTTCTTTGCCACTGGCCTTTCAGGTT +
Preference number: 6 (lower is better)
Translates to: DVFGRVGVFCQA*HMASLPLAFQV
Trigger: AACCTGAAAGGCCAGTGGCAAAGAAGCCATATGTCAAGCCTGACAGAAGACACCCACTCTACCAAAAACATC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
CDS CCA 72 bp TTGGTAGAGTGGGTGTCTTCTGTCAGGCTTGACATATaGCTTCTTTGCCACTGGCCTTTCAGGTTCAAATGT +
Preference number: 6 (lower is better)
Translates to: LVEWVSSVRLDI*LLCHWPFRFKC
Trigger: ACATTTGAACCTGAAAGGCCAGTGGCAAAGAAGCCATATGTCAAGCCTGACAGAAGACACCCACTCTACCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
CDS CAA 90 bp AAAACAGAAACCATGCTTGCCGTGGTCAGGAATTCTCCCTTCATGTaGATGCCACTGGGTCTGTCTCGAAGAATTTCCATCATCGTTTCA +
Preference number: 6 (lower is better)
Translates to: KTETMLAVVRNSPFM*MPLGLSRRISIIVS
Trigger: TGAAACGATGATGGAAATTCTTCGAGACAGACCCAGTGGCATCAACATGAAGGGAGAATTCCTGACCACGGCAAGCATGGTTTCTGTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
CDS CAA 72 bp CAGTTTTCTCCTCGTCGAGATGTCCACTCTGGAGGATaGATTCTATCTCTTCAGATACTGCTTTTTCCAGCT +
Preference number: 6 (lower is better)
Translates to: QFSPRRDVHSGG*ILSLQILLFPA
Trigger: AGCTGGAAAAAGCAGTATCTGAAGAGATAGAATCAATCCTCCAGAGTGGACATCTCGACGAGGAGAAAACTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
CDS CCA 72 bp TCATGTCTGGATGTTCCCGGTCAATCTTGGTTGTTATaGAAAGCTGATTGGAAATATTACGAACGCCTTGGA +
Preference number: 6 (lower is better)
Translates to: SCLDVPGQSWLL*KADWKYYERLG
Trigger: TCCAAGGCGTTCGTAATATTTCCAATCAGCTTTCCATAACAACCAAGATTGACCGGGAACATCCAGACATGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
CDS CAA 72 bp ATGGCTTCTTTGCCACTGGCCTTTCAGGTTCAAATGTaGGTGATTTTGTATCCAACAGTGGTGAAATGTGTG +
Preference number: 6 (lower is better)
Translates to: MASLPLAFQVQM*VILYPTVVKCV
Trigger: CACACATTTCACCACTGTTGGATACAAAATCACCAACATTTGAACCTGAAAGGCCAGTGGCAAAGAAGCCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
CDS CCA 72 bp CGTAGTTCCTCATGTCTGGATGTTCCCGGTCAATCTTaGTTGTTATGGAAAGCTGATTGGAAATATTACGAA +
Preference number: 6 (lower is better)
Translates to: RSSSCLDVPGQS*LLWKADWKYYE
Trigger: TTCGTAATATTTCCAATCAGCTTTCCATAACAACCAAGATTGACCGGGAACATCCAGACATGAGGAACTACG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
CDS CAA 72 bp ACTGTTACTTATCATTTCCAAGGCCTCTTGATGTTTTaGGTAGAGTGGGTGTCTTCTGTCAGGCTTGACATA +
Preference number: 6 (lower is better)
Translates to: TVTYHFQGLLMF*VEWVSSVRLDI
Trigger: TATGTCAAGCCTGACAGAAGACACCCACTCTACCAAAAACATCAAGAGGCCTTGGAAATGATAAGTAACAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
CDS CAA 90 bp CAGCCAAGCTGGGCGACTAAGGACAACAGCATATGTTTCAGGAACTaGATCAACTTCTATATAAGTACACTTGAGACGTTTTTCCAAATC +
Preference number: 6 (lower is better)
Translates to: QPSWATKDNSICFRN*INFYISTLETFFQI
Trigger: GATTTGGAAAAACGTCTCAAGTGTACTTATATAGAAGTTGATCAAGTTCCTGAAACATATGCTGTTGTCCTTAGTCGCCCAGCTTGGCTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000090811.11
ENSMUST00000112050.2
CDS CCA 72 bp AGATTAACAGTTTTCTCCTCGTCGAGATGTCCACTCTaGAGGATTGATTCTATCTCTTCAGATACTGCTTTT +
Preference number: 6 (lower is better)
Translates to: RLTVFSSSRCPL*RIDSISSDTAF
Trigger: AAAAGCAGTATCTGAAGAGATAGAATCAATCCTCCAGAGTGGACATCTCGACGAGGAGAAAACTGTTAATCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
CDS CAA 72 bp TTGCCACTGGCCTTTCAGGTTCAAATGTTGGTGATTTaGTATCCAACAGTGGTGAAATGTGTGGTACAAATA +
Preference number: 6 (lower is better)
Translates to: LPLAFQVQMLVI*YPTVVKCVVQI
Trigger: TATTTGTACCACACATTTCACCACTGTTGGATACAAAATCACCAACATTTGAACCTGAAAGGCCAGTGGCAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
CDS CAA 72 bp TGGGCGACTAAGGACAACAGCATATGTTTCAGGAACTaGATCAACTTCTATATAAGTACACTTGAGACGTTT +
Preference number: 6 (lower is better)
Translates to: WATKDNSICFRN*INFYISTLETF
Trigger: AAACGTCTCAAGTGTACTTATATAGAAGTTGATCAAGTTCCTGAAACATATGCTGTTGTCCTTAGTCGCCCA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090811.11
ENSMUST00000112050.2
CDS CAA 72 bp ATCTCTTCAGATACTGCTTTTTCCAGCTTCCTCATCTaGTCCAATATTGTCTTGCCTTTTTCCTTACTGTTA +
Preference number: 6 (lower is better)
Translates to: ISSDTAFSSFLI*SNIVLPFSLLL
Trigger: TAACAGTAAGGAAAAAGGCAAGACAATATTGGACAAGATGAGGAAGCTGGAAAAAGCAGTATCTGAAGAGAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000090811.11
CDS GCA 72 bp AGTACACTTGAGACGTTTTTCCAAATCATTATGAACTaGAGCTGGACAGTAAATTACTTCTTGTACTTCATC +
Preference number: 6 (lower is better)
Translates to: STLETFFQIIMN*SWTVNYFLYFI
Trigger: GATGAAGTACAAGAAGTAATTTACTGTCCAGCTGCAGTTCATAATGATTTGGAAAAACGTCTCAAGTGTACT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000090811.11
ENSMUST00000112050.2