Pregenerated sensors for SCRG1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031610Ensembl transcript IDs: ENSMUST00000034023.4
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | AGTTTGTGGGAAATTAGGGGACGTGAAGGCCTTCAGGACCATGTTCTCCAGAGTCCCTCCGGAAGGTTGTaGCAATTGCGATCCTTTAGC | + |
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Preference number: 4 (lower is better) Translates to: SLWEIRGREGLQDHVLQSPSGRL*QLRSFS Trigger: GCTAAAGGATCGCAATTGTCACAACCTTCCGGAGGG...ACTCTGGAGAACATGGTCCTGAAGGCCTTCACGTCCCCTAATTTCCCACAAACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034023.4 |
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| CDS-3UTR TCA 90 bp | AAATTAGGGGACGTGAAGGCCTTCAGGACCATGTTCTCCAGAGTGCAAGGCAGATTCCCATCCCAGAAATaGTGCTGGACATTTGCATCT | + |
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Preference number: 4 (lower is better) Translates to: KLGDVKAFRTMFSRVQGRFPSQK*CWTFAS Trigger: AGATGCAAATGTCCAGCATCATTTCTGGGATGGGAA...TCTGCCTTGCACTCTGGAGAACATGGTCCTGAAGGCCTTCACGTCCCCTAATTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034023.4 |
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| CDS-3UTR GCA 90 bp | ATTAGGGGACGTGAAGGCCTTCAGGACCATGTTCTCCAGAGTGCAAGGCAGATCATGATGCTGGACATTTaGATCTATCAGCTTCAGGTC | + |
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Preference number: 4 (lower is better) Translates to: IRGREGLQDHVLQSARQIMMLDI*IYQLQV Trigger: GACCTGAAGCTGATAGATGCAAATGTCCAGCATCAT...GATCTGCCTTGCACTCTGGAGAACATGGTCCTGAAGGCCTTCACGTCCCCTAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034023.4 |
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| CDS-3UTR CCA 90 bp | AGTTTGTGGGAAATTAGGGGACGTGAAGGCCTTCAGGACCATGTTCTCCAGAGTAAAGAAGACATCTTTTaGGCAGCAGAGCAGTTCGCT | + |
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Preference number: 4 (lower is better) Translates to: SLWEIRGREGLQDHVLQSKEDIF*AAEQFA Trigger: AGCGAACTGCTCTGCTGCCCAAAAGATGTCTTCTTT...ACTCTGGAGAACATGGTCCTGAAGGCCTTCACGTCCCCTAATTTCCCACAAACT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034023.4 |
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| CDS-3UTR TCA 90 bp | GAATCTATGCAAGATTGGATATACTGGATGGATATCAGAAATGGCGCTGAACTGGCAGGAGAGGCGACTTaGAGGCATGGCTTGTGTTTC | + |
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Preference number: 4 (lower is better) Translates to: ESMQDWIYWMDIRNGAELAGEAT*RHGLCF Trigger: GAAACACAAGCCATGCCTTCAAGTCGCCTCTCCTGC...CAGTTCAGCGCCATTTCTGATATCCATCCAGTATATCCAATCTTGCATAGATTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034023.4 |
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| CDS-3UTR GCA 90 bp | AGTTTGTGGGAAATTAGGGGACGTGAAGGCCTTCAGGACCATGTTCTCCAGAGTGAAGGTTGTGACAATTaGGATCCTTTAGCAACTTTC | + |
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Preference number: 4 (lower is better) Translates to: SLWEIRGREGLQDHVLQSEGCDN*DPLATF Trigger: GAAAGTTGCTAAAGGATCGCAATTGTCACAACCTTC...ACTCTGGAGAACATGGTCCTGAAGGCCTTCACGTCCCCTAATTTCCCACAAACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034023.4 |
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| CDS GCA 90 bp | GATCATCTCGCATCCCTTCCCATCCCAGAAATGATGCTGGACATTTaGATCTATCAGCTTCAGGTCGGCTCTGCCCTCCGGAAGGTTGTG | + |
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Preference number: 5 (lower is better) Translates to: DHLASLPIPEMMLDI*IYQLQVGSALRKVV Trigger: CACAACCTTCCGGAGGGCAGAGCCGACCTGAAGCTGATAGATGCAAATGTCCAGCATCATTTCTGGGATGGGAAGGGATGCGAGATGATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034023.4 |
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| CDS-3UTR CAA 90 bp | ATTAGGGGACGTGAAGGCCTTCAGGACCATGTTCTCCAGAGTGCAAGGCAGATCAGCAGGAGAGGCGACTaGAAGGCATGGCTTGTGTTT | + |
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Preference number: 5 (lower is better) Translates to: IRGREGLQDHVLQSARQISRRGD*KAWLVF Trigger: AAACACAAGCCATGCCTTCAAGTCGCCTCTCCTGCT...GATCTGCCTTGCACTCTGGAGAACATGGTCCTGAAGGCCTTCACGTCCCCTAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034023.4 |
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| CDS TCA 90 bp | TCTTTGGTCCAAAGAAGACATCTTTTGGGCAGCAGAGCAGTTCGCTaGAGTTGCAGTAGCAGATCATCTCGCATCCCTTCCCATCCCAGA | + |
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Preference number: 5 (lower is better) Translates to: SLVQRRHLLGSRAVR*SCSSRSSRIPSHPR Trigger: TCTGGGATGGGAAGGGATGCGAGATGATCTGCTACTGCAACTTCAGCGAACTGCTCTGCTGCCCAAAAGATGTCTTCTTTGGACCAAAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034023.4 |
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| CDS GCA 90 bp | AGAAATGATGCTGGACATTTGCATCTATCAGCTTCAGGTCGGCTCTaGCCTCCGGAAGGTTGTGACAATTGCGATCCTTTAGCAACTTTC | + |
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Preference number: 5 (lower is better) Translates to: RNDAGHLHLSASGRL*PPEGCDNCDPLATF Trigger: GAAAGTTGCTAAAGGATCGCAATTGTCACAACCTTCCGGAGGGCAGAGCCGACCTGAAGCTGATAGATGCAAATGTCCAGCATCATTTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034023.4 |
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| CDS-3UTR CAA 90 bp | GACTTTATAGAATCTATGCAAGATTGGATATACTGGATGGATATCAGAAATGGCAATGATGCTGGACATTaGCATCTATCAGCTTCAGGT | + |
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Preference number: 5 (lower is better) Translates to: DFIESMQDWIYWMDIRNGNDAGH*HLSASG Trigger: ACCTGAAGCTGATAGATGCAAATGTCCAGCATCATT...GCCATTTCTGATATCCATCCAGTATATCCAATCTTGCATAGATTCTATAAAGTC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034023.4 |
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| CDS GCA 72 bp | GCATCCCTTCCCATCCCAGAAATGATGCTGGACATTTaGATCTATCAGCTTCAGGTCGGCTCTGCCCTCCGG | + |
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Preference number: 6 (lower is better) Translates to: ASLPIPEMMLDI*IYQLQVGSALR Trigger: CCGGAGGGCAGAGCCGACCTGAAGCTGATAGATGCAAATGTCCAGCATCATTTCTGGGATGGGAAGGGATGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034023.4 |
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| CDS GCA 72 bp | TCAGGTCGGCTCTGCCCTCCGGAAGGTTGTGACAATTaGGATCCTTTAGCAACTTTCTGTAGCAGGAGAGGC | + |
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Preference number: 6 (lower is better) Translates to: SGRLCPPEGCDN*DPLATFCSRRG Trigger: GCCTCTCCTGCTACAGAAAGTTGCTAAAGGATCGCAATTGTCACAACCTTCCGGAGGGCAGAGCCGACCTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034023.4 |
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| CDS GCA 72 bp | GCTGGACATTTGCATCTATCAGCTTCAGGTCGGCTCTaGCCTCCGGAAGGTTGTGACAATTGCGATCCTTTA | + |
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Preference number: 6 (lower is better) Translates to: AGHLHLSASGRL*PPEGCDNCDPL Trigger: TAAAGGATCGCAATTGTCACAACCTTCCGGAGGGCAGAGCCGACCTGAAGCTGATAGATGCAAATGTCCAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034023.4 |
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| CDS TCA 72 bp | CAAAGAAGACATCTTTTGGGCAGCAGAGCAGTTCGCTaGAGTTGCAGTAGCAGATCATCTCGCATCCCTTCC | + |
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Preference number: 6 (lower is better) Translates to: QRRHLLGSRAVR*SCSSRSSRIPS Trigger: GGAAGGGATGCGAGATGATCTGCTACTGCAACTTCAGCGAACTGCTCTGCTGCCCAAAAGATGTCTTCTTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034023.4 |
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| CDS CAA 72 bp | GATCCTTTAGCAACTTTCTGTAGCAGGAGAGGCGACTaGAAGGCATGGCTTGTGTTTCTAACAGCAAAGTTA | + |
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Preference number: 6 (lower is better) Translates to: DPLATFCSRRGD*KAWLVFLTAKL Trigger: TAACTTTGCTGTTAGAAACACAAGCCATGCCTTCAAGTCGCCTCTCCTGCTACAGAAAGTTGCTAAAGGATC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034023.4 |
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