Pregenerated sensors for SCP2D1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027431Ensembl transcript IDs: ENSMUST00000028918.4
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CAAAGGTACACATCAGCAGGAAATCAATCGAACTTGAATAGGAAGAATTTGAGTATAAGCCAGAAGTCTTaGTCTTTCCTGGGTATTCCC | + |
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Preference number: 2 (lower is better) Translates to: QRYTSAGNQSNLNRKNLSISQKS*SFLGIP Trigger: GGGAATACCCAGGAAAGATCAAGACTTCTGGCTTAT...ACTCAAATTCTTCCTATTCAAGTTCGATTGATTTCCTGCTGATGTGTACCTTTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028918.4 |
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| 3UTR CAA 90 bp | TCCGGATCCCAGCAAAGGTACACATCAGCAGGAAATCAATCGAACTaGAATAGGAAGAATTTGAGTAAAAATATTGGCTATCGTTTCCTT | + |
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Preference number: 2 (lower is better) Translates to: SGSQQRYTSAGNQSN*NRKNLSKNIGYRFL Trigger: AAGGAAACGATAGCCAATATTTTTACTCAAATTCTTCCTATTCAAGTTCGATTGATTTCCTGCTGATGTGTACCTTTGCTGGGATCCGGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028918.4 |
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| 3UTR-3UTR CAA 90 bp | CTATTCCGGATCCCAGCAAAGGTACACATCAGCAGGAAATCAATCGAACTTGAATATAAGCCAGAAGTCTaGATCTTTCCTGGGTATTCC | + |
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Preference number: 3 (lower is better) Translates to: LFRIPAKVHISRKSIELEYKPEV*IFPGYS Trigger: GGAATACCCAGGAAAGATCAAGACTTCTGGCTTATA...TTCAAGTTCGATTGATTTCCTGCTGATGTGTACCTTTGCTGGGATCCGGAATAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028918.4 |
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| CDS-3UTR GCA 90 bp | CCAACACTTTTTACTATTCCGGATCCCAGCAAAGGTACACATCAGCAGGAAATCGACAGTTTTAGAGCCTaGGGCAGTGCCGACTCTGTG | + |
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Preference number: 4 (lower is better) Translates to: PTLFTIPDPSKGTHQQEIDSFRA*GSADSV Trigger: CACAGAGTCGGCACTGCCGCAGGCTCTAAAACTGTC...GATTTCCTGCTGATGTGTACCTTTGCTGGGATCCGGAATAGTAAAAAGTGTTGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028918.4 |
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| CDS-3UTR TCA 90 bp | CAAAGGTACACATCAGCAGGAAATCAATCGAACTTGAATAGGAAGAATTTGAGTCCCCGGCACCATTCTTaGGGTCAATGGTCCACTGCA | + |
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Preference number: 4 (lower is better) Translates to: QRYTSAGNQSNLNRKNLSPRHHS*GQWSTA Trigger: TGCAGTGGACCATTGACCTCAAGAATGGTGCCGGGG...ACTCAAATTCTTCCTATTCAAGTTCGATTGATTTCCTGCTGATGTGTACCTTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028918.4 |
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| CDS-3UTR GCA 90 bp | CACTTTTTACTATTCCGGATCCCAGCAAAGGTACACATCAGCAGGAAATCAATCAGGTCAATGGTCCACTaGAGAATGGTCTTCCCATCT | + |
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Preference number: 4 (lower is better) Translates to: HFLLFRIPAKVHISRKSIRSMVH*RMVFPS Trigger: AGATGGGAAGACCATTCTGCAGTGGACCATTGACCT...GATTGATTTCCTGCTGATGTGTACCTTTGCTGGGATCCGGAATAGTAAAAAGTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028918.4 |
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| CDS-3UTR CCA 90 bp | CCAACACTTTTTACTATTCCGGATCCCAGCAAAGGTACACATCAGCAGGAAATCCAGGAAAGCCTTCTGTaGGTTTATCTTACCCACAAC | + |
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Preference number: 4 (lower is better) Translates to: PTLFTIPDPSKGTHQQEIQESLL*VYLTHN Trigger: GTTGTGGGTAAGATAAACCCACAGAAGGCTTTCCTG...GATTTCCTGCTGATGTGTACCTTTGCTGGGATCCGGAATAGTAAAAAGTGTTGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028918.4 |
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| CDS-3UTR TCA 90 bp | TACTATTCCGGATCCCAGCAAAGGTACACATCAGCAGGAAATCAATCGAACTTGTTGGTGATGTCAAGCTaGAAGATGGCATTCACTTTC | + |
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Preference number: 4 (lower is better) Translates to: YYSGSQQRYTSAGNQSNLLVMSS*KMAFTF Trigger: GAAAGTGAATGCCATCTTTCAGCTTGACATCACCAA...CAAGTTCGATTGATTTCCTGCTGATGTGTACCTTTGCTGGGATCCGGAATAGTA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028918.4 |
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| CDS-3UTR TCA 90 bp | ACTTTTTACTATTCCGGATCCCAGCAAAGGTACACATCAGCAGGAAATCAATCGTCTTCCCATCTTTGGTaGTGTCAAGCTGAAAGATGG | + |
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Preference number: 4 (lower is better) Translates to: TFYYSGSQQRYTSAGNQSSSHLW*CQAERW Trigger: CCATCTTTCAGCTTGACATCACCAAAGATGGGAAGA...CGATTGATTTCCTGCTGATGTGTACCTTTGCTGGGATCCGGAATAGTAAAAAGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028918.4 |
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| CDS-3UTR CCA 90 bp | AGGTACACATCAGCAGGAAATCAATCGAACTTGAATAGGAAGAATTTGAGTAAAACTTTCTTTACCAGTTaGGCTCCCACTTCTTTGATG | + |
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Preference number: 4 (lower is better) Translates to: RYTSAGNQSNLNRKNLSKTFFTS*APTSLM Trigger: CATCAAAGAAGTGGGAGCCCAACTGGTAAAGAAAGT...TTTACTCAAATTCTTCCTATTCAAGTTCGATTGATTTCCTGCTGATGTGTACCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028918.4 |
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| CDS-3UTR CCA 90 bp | CAAAGGTACACATCAGCAGGAAATCAATCGAACTTGAATAGGAAGAATTTGAGTACTTCTTTGATGTGTTaGCTAATGTCCTCAAATACC | + |
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Preference number: 4 (lower is better) Translates to: QRYTSAGNQSNLNRKNLSTSLMC*LMSSNT Trigger: GGTATTTGAGGACATTAGCCAACACATCAAAGAAGT...ACTCAAATTCTTCCTATTCAAGTTCGATTGATTTCCTGCTGATGTGTACCTTTG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028918.4 |
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| CDS-3UTR CCA 90 bp | CAAAGGTACACATCAGCAGGAAATCAATCGAACTTGAATAGGAAGAATTTGAGTTGTCAAGCTGAAAGATaGCATTCACTTTCTTTACCA | + |
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Preference number: 4 (lower is better) Translates to: QRYTSAGNQSNLNRKNLSCQAER*HSLSLP Trigger: TGGTAAAGAAAGTGAATGCCATCTTTCAGCTTGACA...ACTCAAATTCTTCCTATTCAAGTTCGATTGATTTCCTGCTGATGTGTACCTTTG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028918.4 |
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| CDS-3UTR CAA 90 bp | CTATTCCGGATCCCAGCAAAGGTACACATCAGCAGGAAATCAATCGAACTTGAATCCCCGGCACCATTCTaGAGGTCAATGGTCCACTGC | + |
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Preference number: 5 (lower is better) Translates to: LFRIPAKVHISRKSIELESPAPF*RSMVHC Trigger: GCAGTGGACCATTGACCTCAAGAATGGTGCCGGGGA...TTCAAGTTCGATTGATTTCCTGCTGATGTGTACCTTTGCTGGGATCCGGAATAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028918.4 |
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| CDS TCA 90 bp | ATGGTCCACTGCAGAATGGTCTTCCCATCTTTGGTGATGTCAAGCTaGAAGATGGCATTCACTTTCTTTACCAGTTGGGCTCCCACTTCT | + |
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Preference number: 5 (lower is better) Translates to: MVHCRMVFPSLVMSS*KMAFTFFTSWAPTS Trigger: AGAAGTGGGAGCCCAACTGGTAAAGAAAGTGAATGCCATCTTTCAGCTTGACATCACCAAAGATGGGAAGACCATTCTGCAGTGGACCAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028918.4 |
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| CDS TCA 90 bp | ACTTCTTTGATGTGTTGGCTAATGTCCTCAAATACCGAAAAGTTCTaGAAGTCTGACAGTTTTAGAGCCTGCGGCAGTGCCGACTCTGTG | + |
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Preference number: 5 (lower is better) Translates to: TSLMCWLMSSNTEKF*KSDSFRACGSADSV Trigger: CACAGAGTCGGCACTGCCGCAGGCTCTAAAACTGTCAGACTTTCAGAACTTTTCGGTATTTGAGGACATTAGCCAACACATCAAAGAAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028918.4 |
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| CDS-3UTR CAA 90 bp | CTATTCCGGATCCCAGCAAAGGTACACATCAGCAGGAAATCAATCGAACTTGAATGCTTTGATCTTCGCTaGAGGATCAGGTCTCTTCCA | + |
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Preference number: 5 (lower is better) Translates to: LFRIPAKVHISRKSIELECFDLR*RIRSLP Trigger: TGGAAGAGACCTGATCCTCAAGCGAAGATCAAAGCA...TTCAAGTTCGATTGATTTCCTGCTGATGTGTACCTTTGCTGGGATCCGGAATAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028918.4 |
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| CDS-3UTR CAA 90 bp | CAACACTTTTTACTATTCCGGATCCCAGCAAAGGTACACATCAGCAGGAAATCACCTCTCACTTTAAACTaGCCAGCCAGGAAAGCCTTC | + |
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Preference number: 5 (lower is better) Translates to: QHFLLFRIPAKVHISRKSPLTLN*PARKAF Trigger: GAAGGCTTTCCTGGCTGGCAAGTTTAAAGTGAGAGG...TGATTTCCTGCTGATGTGTACCTTTGCTGGGATCCGGAATAGTAAAAAGTGTTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028918.4 |
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| CDS-3UTR CAA 90 bp | CAACACTTTTTACTATTCCGGATCCCAGCAAAGGTACACATCAGCAGGAAATCACACTTTCTTTACCAGTaGGGCTCCCACTTCTTTGAT | + |
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Preference number: 5 (lower is better) Translates to: QHFLLFRIPAKVHISRKSHFLYQ*GSHFFD Trigger: ATCAAAGAAGTGGGAGCCCAACTGGTAAAGAAAGTG...TGATTTCCTGCTGATGTGTACCTTTGCTGGGATCCGGAATAGTAAAAAGTGTTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028918.4 |
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| CDS CCA 72 bp | CTGACAGTTTTAGAGCCTGCGGCAGTGCCGACTCTGTaGCCGATCCCAGAGCCAGAGACTGGCAAGTCTGAG | + |
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Preference number: 6 (lower is better) Translates to: LTVLEPAAVPTL*PIPEPETGKSE Trigger: CTCAGACTTGCCAGTCTCTGGCTCTGGGATCGGCCACAGAGTCGGCACTGCCGCAGGCTCTAAAACTGTCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028918.4 |
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| CDS GCA 72 bp | TGTGAAGACAGAGTCAGGGATGATGAAGACGGTATCTaGAGGAAGCCGGGCCGATCCCAGGTACATGTCCCC | + |
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Preference number: 6 (lower is better) Translates to: CEDRVRDDEDGI*RKPGRSQVHVP Trigger: GGGGACATGTACCTGGGATCGGCCCGGCTTCCTGCAGATACCGTCTTCATCATCCCTGACTCTGTCTTCACA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028918.4 |
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| CDS TCA 72 bp | ATGTGTTGGCTAATGTCCTCAAATACCGAAAAGTTCTaGAAGTCTGACAGTTTTAGAGCCTGCGGCAGTGCC | + |
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Preference number: 6 (lower is better) Translates to: MCWLMSSNTEKF*KSDSFRACGSA Trigger: GGCACTGCCGCAGGCTCTAAAACTGTCAGACTTTCAGAACTTTTCGGTATTTGAGGACATTAGCCAACACAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028918.4 |
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| CDS TCA 72 bp | TGCAGAATGGTCTTCCCATCTTTGGTGATGTCAAGCTaGAAGATGGCATTCACTTTCTTTACCAGTTGGGCT | + |
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Preference number: 6 (lower is better) Translates to: CRMVFPSLVMSS*KMAFTFFTSWA Trigger: AGCCCAACTGGTAAAGAAAGTGAATGCCATCTTTCAGCTTGACATCACCAAAGATGGGAAGACCATTCTGCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028918.4 |
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| CDS CAA 72 bp | GCATTCACTTTCTTTACCAGTTGGGCTCCCACTTCTTaGATGTGTTGGCTAATGTCCTCAAATACCGAAAAG | + |
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Preference number: 6 (lower is better) Translates to: AFTFFTSWAPTS*MCWLMSSNTEK Trigger: CTTTTCGGTATTTGAGGACATTAGCCAACACATCAAAGAAGTGGGAGCCCAACTGGTAAAGAAAGTGAATGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028918.4 |
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| CDS CAA 90 bp | TTTGGTGATGTCAAGCTGAAAGATGGCATTCACTTTCTTTACCAGTaGGGCTCCCACTTCTTTGATGTGTTGGCTAATGTCCTCAAATAC | + |
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Preference number: 6 (lower is better) Translates to: FGDVKLKDGIHFLYQ*GSHFFDVLANVLKY Trigger: GTATTTGAGGACATTAGCCAACACATCAAAGAAGTGGGAGCCCAACTGGTAAAGAAAGTGAATGCCATCTTTCAGCTTGACATCACCAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028918.4 |
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| CDS CAA 72 bp | TTTCTTTACCAGTTGGGCTCCCACTTCTTTGATGTGTaGGCTAATGTCCTCAAATACCGAAAAGTTCTGAAA | + |
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Preference number: 6 (lower is better) Translates to: FLYQLGSHFFDV*ANVLKYRKVLK Trigger: TTTCAGAACTTTTCGGTATTTGAGGACATTAGCCAACACATCAAAGAAGTGGGAGCCCAACTGGTAAAGAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028918.4 |
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