Pregenerated sensors for SCOC (Mus musculus)
Ensembl gene IDs: ENSMUSG00000063253Ensembl transcript IDs: ENSMUST00000081506.11, ENSMUST00000167525.3, ENSMUST00000212905.2
Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GCTGAAGTTACCGTCAGGGAGGGAGATGGGAGAGGCACAAGACGGTaGACAAGGTACAGAAGCTGTGCATTCAGTACATGGTTTTGGTCA | + |
|
Preference number: 1 (lower is better) Translates to: AEVTVREGDGRGTRR*TRYRSCAFSTWFWS Trigger: TGACCAAAACCATGTACTGAATGCACAGCTTCTGTACCTTGTGCACCGTCTTGTGCCTCTCCCATCTCCCTCCCTGACGGTAACTTCAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000081506.11 ENSMUST00000167525.3 |
||
| 3UTR TCA 90 bp | AGTGTCAACAATTCTAGTTTAGGTTACTCTTGTAGGAGAAACTGCTaGAGTTACCGTCAGGGAGGGAGATGGGAGAGGCACAAGACGGTG | + |
|
Preference number: 1 (lower is better) Translates to: SVNNSSLGYSCRRNC*SYRQGGRWERHKTV Trigger: CACCGTCTTGTGCCTCTCCCATCTCCCTCCCTGACGGTAACTTCAGCAGTTTCTCCTACAAGAGTAACCTAAACTAGAATTGTTGACACT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000081506.11 ENSMUST00000167525.3 |
||
| 3UTR GCA 90 bp | GGGAGATGGGAGAGGCACAAGACGGTGCACAAGGTACAGAAGCTGTaGATTCAGTACATGGTTTTGGTCACTTTTCACAACATGGTTATT | + |
|
Preference number: 1 (lower is better) Translates to: GRWERHKTVHKVQKL*IQYMVLVTFHNMVI Trigger: AATAACCATGTTGTGAAAAGTGACCAAAACCATGTACTGAATGCACAGCTTCTGTACCTTGTGCACCGTCTTGTGCCTCTCCCATCTCCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000081506.11 ENSMUST00000167525.3 ENSMUST00000212905.2 |
||
| 3UTR GCA 90 bp | GTGCAGCTGTGGGCCAGAGGTAATACACATTTAGAGGGAAAACACTaGGAGCTGGTTATTTCTGTTAATCCAGTTTTCCTTCTTATTCCT | + |
|
Preference number: 1 (lower is better) Translates to: VQLWARGNTHLEGKH*ELVISVNPVFLLIP Trigger: AGGAATAAGAAGGAAAACTGGATTAACAGAAATAACCAGCTCGCAGTGTTTTCCCTCTAAATGTGTATTACCTCTGGCCCACAGCTGCAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000081506.11 ENSMUST00000167525.3 |
||
| 3UTR-3UTR CCA 90 bp | AGGGAGGGAGATGGGAGAGGCACAAGACGGTGCACAAGGTACAGAAGCTGTGCATTCAGTACATGGTTTTaGTCACTTTTCACAACATGG | + |
|
Preference number: 2 (lower is better) Translates to: REGDGRGTRRCTRYRSCAFSTWF*SLFTTW Trigger: CCATGTTGTGAAAAGTGACCAAAACCATGTACTGAA...TGCACAGCTTCTGTACCTTGTGCACCGTCTTGTGCCTCTCCCATCTCCCTCCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000081506.11 ENSMUST00000167525.3 ENSMUST00000212905.2 |
||
| 3UTR-3UTR CCA 90 bp | GTGCAGCTGTGGGCCAGAGGTAATACACATTTAGAGGGAAAACACTGCGAGCTGTTCAGTACATGGTTTTaGTCACTTTTCACAACATGG | + |
|
Preference number: 2 (lower is better) Translates to: VQLWARGNTHLEGKHCELFSTWF*SLFTTW Trigger: CCATGTTGTGAAAAGTGACCAAAACCATGTACTGAA...CAGCTCGCAGTGTTTTCCCTCTAAATGTGTATTACCTCTGGCCCACAGCTGCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000081506.11 ENSMUST00000167525.3 |
||
| 3UTR-3UTR CCA 90 bp | GTGCAGCTGTGGGCCAGAGGTAATACACATTTAGAGGGAAAACACTGCGAGCTGTGTGCATTCAGTACATaGTTTTGGTCACTTTTCACA | + |
|
Preference number: 2 (lower is better) Translates to: VQLWARGNTHLEGKHCELCAFST*FWSLFT Trigger: TGTGAAAAGTGACCAAAACCATGTACTGAATGCACA...CAGCTCGCAGTGTTTTCCCTCTAAATGTGTATTACCTCTGGCCCACAGCTGCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000081506.11 ENSMUST00000167525.3 |
||
| 3UTR GCA 72 bp | ACCGTCAGGGAGGGAGATGGGAGAGGCACAAGACGGTaGACAAGGTACAGAAGCTGTGCATTCAGTACATGG | + |
|
Preference number: 3 (lower is better) Translates to: TVREGDGRGTRR*TRYRSCAFSTW Trigger: CCATGTACTGAATGCACAGCTTCTGTACCTTGTGCACCGTCTTGTGCCTCTCCCATCTCCCTCCCTGACGGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000081506.11 ENSMUST00000167525.3 |
||
| 3UTR TCA 72 bp | AATTCTAGTTTAGGTTACTCTTGTAGGAGAAACTGCTaGAGTTACCGTCAGGGAGGGAGATGGGAGAGGCAC | + |
|
Preference number: 3 (lower is better) Translates to: NSSLGYSCRRNC*SYRQGGRWERH Trigger: GTGCCTCTCCCATCTCCCTCCCTGACGGTAACTTCAGCAGTTTCTCCTACAAGAGTAACCTAAACTAGAATT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000081506.11 ENSMUST00000167525.3 |
||
| 3UTR GCA 72 bp | GAGAGGCACAAGACGGTGCACAAGGTACAGAAGCTGTaGATTCAGTACATGGTTTTGGTCACTTTTCACAAC | + |
|
Preference number: 3 (lower is better) Translates to: ERHKTVHKVQKL*IQYMVLVTFHN Trigger: GTTGTGAAAAGTGACCAAAACCATGTACTGAATGCACAGCTTCTGTACCTTGTGCACCGTCTTGTGCCTCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000081506.11 ENSMUST00000167525.3 ENSMUST00000212905.2 |
||
| 3UTR GCA 72 bp | TGGGCCAGAGGTAATACACATTTAGAGGGAAAACACTaGGAGCTGGTTATTTCTGTTAATCCAGTTTTCCTT | + |
|
Preference number: 3 (lower is better) Translates to: WARGNTHLEGKH*ELVISVNPVFL Trigger: AAGGAAAACTGGATTAACAGAAATAACCAGCTCGCAGTGTTTTCCCTCTAAATGTGTATTACCTCTGGCCCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000081506.11 ENSMUST00000167525.3 |
||
| CDS-3UTR GCA 90 bp | TACCGTCAGGGAGGGAGATGGGAGAGGCACAAGACGGTGCACAAGGTACAGAAGAACTGCATCTACTCTTaGAGAAAGATCTTCAAGTGT | + |
|
Preference number: 4 (lower is better) Translates to: YRQGGRWERHKTVHKVQKNCIYS*RKIFKC Trigger: ACACTTGAAGATCTTTCTGCAAGAGTAGATGCAGTT...CTTCTGTACCTTGTGCACCGTCTTGTGCCTCTCCCATCTCCCTCCCTGACGGTA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000081506.11 ENSMUST00000167525.3 |
||
| CDS-3UTR GCA 90 bp | GTGCAGCTGTGGGCCAGAGGTAATACACATTTAGAGGGAAAACACTGCGAGCTGAACTGCATCTACTCTTaGAGAAAGATCTTCAAGTGT | + |
|
Preference number: 4 (lower is better) Translates to: VQLWARGNTHLEGKHCELNCIYS*RKIFKC Trigger: ACACTTGAAGATCTTTCTGCAAGAGTAGATGCAGTT...CAGCTCGCAGTGTTTTCCCTCTAAATGTGTATTACCTCTGGCCCACAGCTGCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000081506.11 ENSMUST00000167525.3 |
||
| CDS-3UTR CCA 90 bp | GGTGCACAAGGTACAGAAGCTGTGCATTCAGTACATGGTTTTGGTCACTTTTCACAGCATTCATCATCTTaGGTAGCAGACTTTCAGCCC | + |
|
Preference number: 4 (lower is better) Translates to: GAQGTEAVHSVHGFGHFSQHSSS*VADFQP Trigger: GGGCTGAAAGTCTGCTACCCAAGATGATGAATGCTG...TGAAAAGTGACCAAAACCATGTACTGAATGCACAGCTTCTGTACCTTGTGCACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000081506.11 |
||
| CDS-3UTR TCA 90 bp | CGGTGCACAAGGTACAGAAGCTGTGCATTCAGTACATGGTTTTGGTCACTTTTCTGGAGTTCCAACACCTaGTTAATAAGTCGAGTCTTT | + |
|
Preference number: 4 (lower is better) Translates to: RCTRYRSCAFSTWFWSLFWSSNT*LISRVF Trigger: AAAGACTCGACTTATTAATCAGGTGTTGGAACTCCA...GAAAAGTGACCAAAACCATGTACTGAATGCACAGCTTCTGTACCTTGTGCACCG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000081506.11 ENSMUST00000167525.3 ENSMUST00000212905.2 |
||
| CDS-3UTR TCA 90 bp | AAGGTACAGAAGCTGTGCATTCAGTACATGGTTTTGGTCACTTTTCACAACATGTGGAGTTCCAACACCTaGTTAATAAGTCGAGTCTTT | + |
|
Preference number: 4 (lower is better) Translates to: KVQKLCIQYMVLVTFHNMWSSNT*LISRVF Trigger: AAAGACTCGACTTATTAATCAGGTGTTGGAACTCCA...CATGTTGTGAAAAGTGACCAAAACCATGTACTGAATGCACAGCTTCTGTACCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000081506.11 ENSMUST00000167525.3 ENSMUST00000212905.2 |
||
| CDS-3UTR GCA 90 bp | GGTGCACAAGGTACAGAAGCTGTGCATTCAGTACATGGTTTTGGTCACTTTTCAATTTTCTTCCTTAACTaGATCTACTCTTGCAGAAAG | + |
|
Preference number: 4 (lower is better) Translates to: GAQGTEAVHSVHGFGHFSIFFLN*IYSCRK Trigger: CTTTCTGCAAGAGTAGATGCAGTTAAGGAAGAAAAT...TGAAAAGTGACCAAAACCATGTACTGAATGCACAGCTTCTGTACCTTGTGCACC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000081506.11 ENSMUST00000167525.3 ENSMUST00000212905.2 |
||
| CDS-3UTR TCA 90 bp | AGAAGCTGTGCATTCAGTACATGGTTTTGGTCACTTTTCACAACATGGTTATTTTGGAGTTCCAACACCTaGTTAATAAGTCGAGTCTTT | + |
|
Preference number: 4 (lower is better) Translates to: RSCAFSTWFWSLFTTWLFWSSNT*LISRVF Trigger: AAAGACTCGACTTATTAATCAGGTGTTGGAACTCCA...AAATAACCATGTTGTGAAAAGTGACCAAAACCATGTACTGAATGCACAGCTTCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000081506.11 ENSMUST00000167525.3 ENSMUST00000212905.2 |
||
| CDS-3UTR GCA 90 bp | ACAAGGTACAGAAGCTGTGCATTCAGTACATGGTTTTGGTCACTTTTCACAACAATTTTCTTCCTTAACTaGATCTACTCTTGCAGAAAG | + |
|
Preference number: 4 (lower is better) Translates to: TRYRSCAFSTWFWSLFTTIFFLN*IYSCRK Trigger: CTTTCTGCAAGAGTAGATGCAGTTAAGGAAGAAAAT...TGTTGTGAAAAGTGACCAAAACCATGTACTGAATGCACAGCTTCTGTACCTTGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000081506.11 ENSMUST00000167525.3 ENSMUST00000212905.2 |
||
| CDS-3UTR CCA 90 bp | AAGGTACAGAAGCTGTGCATTCAGTACATGGTTTTGGTCACTTTTCACAACATGCAACTCTTTAAAGAATaGTCTGTGTCATCTTCAAGA | + |
|
Preference number: 4 (lower is better) Translates to: KVQKLCIQYMVLVTFHNMQLFKE*SVSSSR Trigger: TCTTGAAGATGACACAGACCATTCTTTAAAGAGTTG...CATGTTGTGAAAAGTGACCAAAACCATGTACTGAATGCACAGCTTCTGTACCTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000081506.11 |
||
| CDS-3UTR GCA 90 bp | TACTCAGGGAAGAACAAAGATACTCTAACTTTTGGATCATATCCAAGCCTTAAGAACTGCATCTACTCTTaGAGAAAGATCTTCAAGTGT | + |
|
Preference number: 4 (lower is better) Translates to: YSGKNKDTLTFGSYPSLKNCIYS*RKIFKC Trigger: ACACTTGAAGATCTTTCTGCAAGAGTAGATGCAGTT...CTTAAGGCTTGGATATGATCCAAAAGTTAGAGTATCTTTGTTCTTCCCTGAGTA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000081506.11 ENSMUST00000167525.3 ENSMUST00000212905.2 |
||
| CDS TCA 90 bp | AACTCTTTAAAGAATGGTCTGTGTCATCTTCAAGAGAAATGCTGGTaGACGTGCTGTCTTCCTCCTCCCCTGTGCTCAATCCGTCCATCT | + |
|
Preference number: 5 (lower is better) Translates to: NSLKNGLCHLQEKCW*TCCLPPPLCSIRPS Trigger: AGATGGACGGATTGAGCACAGGGGAGGAGGAAGACAGCACGTTCACCAGCATTTCTCTTGAAGATGACACAGACCATTCTTTAAAGAGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081506.11 |
||
| CDS-3UTR CAA 90 bp | CGGTGCACAAGGTACAGAAGCTGTGCATTCAGTACATGGTTTTGGTCACTTTTCTCAGCATTCATCATCTaGGGTAGCAGACTTTCAGCC | + |
|
Preference number: 5 (lower is better) Translates to: RCTRYRSCAFSTWFWSLFSAFII*GSRLSA Trigger: GGCTGAAAGTCTGCTACCCAAGATGATGAATGCTGA...GAAAAGTGACCAAAACCATGTACTGAATGCACAGCTTCTGTACCTTGTGCACCG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000081506.11 |
||
| CDS-3UTR CAA 90 bp | GGTGCACAAGGTACAGAAGCTGTGCATTCAGTACATGGTTTTGGTCACTTTTCAATCTTCAAGTGTGTGTaGGAGTTCCAACACCTGATT | + |
|
Preference number: 5 (lower is better) Translates to: GAQGTEAVHSVHGFGHFSIFKCV*EFQHLI Trigger: AATCAGGTGTTGGAACTCCAACACACACTTGAAGAT...TGAAAAGTGACCAAAACCATGTACTGAATGCACAGCTTCTGTACCTTGTGCACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000081506.11 ENSMUST00000167525.3 ENSMUST00000212905.2 |
||
| CDS-3UTR CAA 90 bp | AGAAGCTGTGCATTCAGTACATGGTTTTGGTCACTTTTCACAACATGGTTATTTATCTTCAAGTGTGTGTaGGAGTTCCAACACCTGATT | + |
|
Preference number: 5 (lower is better) Translates to: RSCAFSTWFWSLFTTWLFIFKCV*EFQHLI Trigger: AATCAGGTGTTGGAACTCCAACACACACTTGAAGAT...AAATAACCATGTTGTGAAAAGTGACCAAAACCATGTACTGAATGCACAGCTTCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000081506.11 ENSMUST00000167525.3 ENSMUST00000212905.2 |
||
| CDS TCA 72 bp | AAGAATGGTCTGTGTCATCTTCAAGAGAAATGCTGGTaGACGTGCTGTCTTCCTCCTCCCCTGTGCTCAATC | + |
|
Preference number: 6 (lower is better) Translates to: KNGLCHLQEKCW*TCCLPPPLCSI Trigger: GATTGAGCACAGGGGAGGAGGAAGACAGCACGTTCACCAGCATTTCTCTTGAAGATGACACAGACCATTCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081506.11 |
||