RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SCO1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000069844

Ensembl transcript IDs: ENSMUST00000092996.5, ENSMUST00000108690.10

Found 68 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GACCCAGGTGTGGGCTCAGGTCCTCAGATCTCAGTCACTTGCCCCTaGAGACCCAGGTCTCTGTATCCCACTCTGACTCAAGAGAGGCCA +
Preference number: 1 (lower is better)
Translates to: DPGVGSGPQISVTCP*RPRSLYPTLTQERP
Trigger: TGGCCTCTCTTGAGTCAGAGTGGGATACAGAGACCTGGGTCTCCAGGGGCAAGTGACTGAGATCTGAGGACCTGAGCCCACACCTGGGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10
3UTR GCA 90 bp ACAGATGACCCAGGTGTGGGCTCAGGTCCTCAGATCTCAGTCACTTaGCCCTGGAGACCCAGGTCTCTGTATCCCACTCTGACTCAAGAG +
Preference number: 1 (lower is better)
Translates to: TDDPGVGSGPQISVT*PWRPRSLYPTLTQE
Trigger: CTCTTGAGTCAGAGTGGGATACAGAGACCTGGGTCTCCAGGGGCAAGTGACTGAGATCTGAGGACCTGAGCCCACACCTGGGTCATCTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10
3UTR GCA 90 bp AGCAACACTACTCCAAGAGTGCCATTCCTACAGATGTGCATTGTGTaGCTCTCTGATGGTTCTGGACGTCTGTTCTCCACTGGCTCTGAC +
Preference number: 1 (lower is better)
Translates to: SNTTPRVPFLQMCIV*LSDGSGRLFSTGSD
Trigger: GTCAGAGCCAGTGGAGAACAGACGTCCAGAACCATCAGAGAGGCACACAATGCACATCTGTAGGAATGGCACTCTTGGAGTAGTGTTGCT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10
3UTR CCA 90 bp AGCCAGACGACATTCCCTGGAGTAGCTGCTGACACCTTTAAGAGCTaGTTATGCTTGTTACTTCTCTATGGAACAGATGACCCAGGTGTG +
Preference number: 1 (lower is better)
Translates to: SQTTFPGVAADTFKS*LCLLLLYGTDDPGV
Trigger: CACACCTGGGTCATCTGTTCCATAGAGAAGTAACAAGCATAACCAGCTCTTAAAGGTGTCAGCAGCTACTCCAGGGAATGTCGTCTGGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10
3UTR TCA 90 bp TCTCTGTATCCCACTCTGACTCAAGAGAGGCCAGTTCCTGGCCTGTaGATCTGCATTTTAACAAGCACTTATCTATTTAACAAGCACTTC +
Preference number: 1 (lower is better)
Translates to: SLYPTLTQERPVPGL*ICILTSTYLFNKHF
Trigger: GAAGTGCTTGTTAAATAGATAAGTGCTTGTTAAAATGCAGATTCACAGGCCAGGAACTGGCCTCTCTTGAGTCAGAGTGGGATACAGAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10
3UTR GCA 90 bp CTAGGGACCCATTCTTCACAGAAGCAAAGCCATGCTTGTCCAAGTTaGTGGACTGACCACATCTTTTATTTCATACATTGTGTAATCTGG +
Preference number: 1 (lower is better)
Translates to: LGTHSSQKQSHACPS*WTDHIFYFIHCVIW
Trigger: CCAGATTACACAATGTATGAAATAAAAGATGTGGTCAGTCCAGCAACTTGGACAAGCATGGCTTTGCTTCTGTGAAGAATGGGTCCCTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10
3UTR TCA 90 bp CTCAAATATAAAGAGGACTTGAATGCCTATGCTGAGCACACAAATTaGAACAGCAAGAACATTACGGAAGTGACACCTTCCTGTAGAATT +
Preference number: 1 (lower is better)
Translates to: LKYKEDLNAYAEHTN*NSKNITEVTPSCRI
Trigger: AATTCTACAGGAAGGTGTCACTTCCGTAATGTTCTTGCTGTTTCAATTTGTGTGCTCAGCATAGGCATTCAAGTCCTCTTTATATTTGAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10
3UTR-3UTR GCA 90 bp AGGCTAGCCTCAAACTTGAAGAAGCCCCTGCCTCTGCCTCCCGAGTGCTGGGACCAGATCTCAGTCACTTaGCCCTGGAGACCCAGGTCT +
Preference number: 2 (lower is better)
Translates to: RLASNLKKPLPLPPECWDQISVT*PWRPRS
Trigger: AGACCTGGGTCTCCAGGGGCAAGTGACTGAGATCTG...GTCCCAGCACTCGGGAGGCAGAGGCAGGGGCTTCTTCAAGTTTGAGGCTAGCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10
3UTR-3UTR GCA 90 bp AGCCCCTGCCTCTGCCTCCCGAGTGCTGGGACTAACAGTGTGCACACCACACCCCAGATGTGCATTGTGTaGCTCTCTGATGGTTCTGGA +
Preference number: 2 (lower is better)
Translates to: SPCLCLPSAGTNSVHTTPQMCIV*LSDGSG
Trigger: TCCAGAACCATCAGAGAGGCACACAATGCACATCTG...GGGTGTGGTGTGCACACTGTTAGTCCCAGCACTCGGGAGGCAGAGGCAGGGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10
3UTR-3UTR TCA 90 bp AACAGTGTGCACACCACACCCAGCCAGACGACATTCCCTGGAGTAGCTGCTGACGCAGCACCTACTGTGTaGCAGAGATGCAGACCTGAT +
Preference number: 2 (lower is better)
Translates to: NSVHTTPSQTTFPGVAADAAPTV*QRCRPD
Trigger: ATCAGGTCTGCATCTCTGTCACACAGTAGGTGCTGC...GTCAGCAGCTACTCCAGGGAATGTCGTCTGGCTGGGTGTGGTGTGCACACTGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10
3UTR-3UTR GCA 90 bp AGGCTAGCCTCAAACTTGAAGAAGCCCCTGCCTCTGCCTCCCGAGTGCTGGGACACAGAAGCAAAGCCATaGTTGTCCAAGTTGCTGGAC +
Preference number: 2 (lower is better)
Translates to: RLASNLKKPLPLPPECWDTEAKP*LSKLLD
Trigger: GTCCAGCAACTTGGACAAGCATGGCTTTGCTTCTGT...GTCCCAGCACTCGGGAGGCAGAGGCAGGGGCTTCTTCAAGTTTGAGGCTAGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10
3UTR-3UTR TCA 90 bp AACAGTGTGCACACCACACCCAGCCAGACGACATTCCCTGGAGTAGCTGCTGACCCAGTTCCTGGCCTGTaGATCTGCATTTTAACAAGC +
Preference number: 2 (lower is better)
Translates to: NSVHTTPSQTTFPGVAADPVPGL*ICILTS
Trigger: GCTTGTTAAAATGCAGATTCACAGGCCAGGAACTGG...GTCAGCAGCTACTCCAGGGAATGTCGTCTGGCTGGGTGTGGTGTGCACACTGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10
3UTR-3UTR TCA 90 bp TCTGCCTCCCGAGTGCTGGGACTAACAGTGTGCACACCACACCCAGCCAGACGAAATATAAAGAGGACTTaGATGCCTATGCTGAGCACA +
Preference number: 2 (lower is better)
Translates to: SASRVLGLTVCTPHPARRNIKRT*MPMLST
Trigger: TGTGCTCAGCATAGGCATTCAAGTCCTCTTTATATT...TCGTCTGGCTGGGTGTGGTGTGCACACTGTTAGTCCCAGCACTCGGGAGGCAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10
3UTR-3UTR GCA 90 bp AACAGTGTGCACACCACACCCAGCCAGACGACATTCCCTGGAGTAGCTGCTGACCCATTCCTACAGATGTaGATTGTGTGCCTCTCTGAT +
Preference number: 2 (lower is better)
Translates to: NSVHTTPSQTTFPGVAADPFLQM*IVCLSD
Trigger: ATCAGAGAGGCACACAATGCACATCTGTAGGAATGG...GTCAGCAGCTACTCCAGGGAATGTCGTCTGGCTGGGTGTGGTGTGCACACTGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10
3UTR-3UTR TCA 90 bp GTGCACACCACACCCAGCCAGACGACATTCCCTGGAGTAGCTGCTGACACCTTTAATATAAAGAGGACTTaGATGCCTATGCTGAGCACA +
Preference number: 2 (lower is better)
Translates to: VHTTPSQTTFPGVAADTFNIKRT*MPMLST
Trigger: TGTGCTCAGCATAGGCATTCAAGTCCTCTTTATATT...AAAGGTGTCAGCAGCTACTCCAGGGAATGTCGTCTGGCTGGGTGTGGTGTGCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10
3UTR-3UTR TCA 90 bp TTAACAAGCACTTCAGTCTGTGGCCTCTACCCCTACCATGGTGTGCTAGGGACCACATCTCATGTAGAATaGTGTTCTCAGGGTATGAAG +
Preference number: 2 (lower is better)
Translates to: LTSTSVCGLYPYHGVLGTTSHVE*CSQGMK
Trigger: CTTCATACCCTGAGAACATCATTCTACATGAGATGT...GGTCCCTAGCACACCATGGTAGGGGTAGAGGCCACAGACTGAAGTGCTTGTTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10
3UTR-3UTR GCA 90 bp CACCTACTGTGTGACAGAGATGCAGACCTGATGGTGACATTCCTTTTCAAAGAAACACTACTCCAAGAGTaGCATTCCTACAGATGTGCA +
Preference number: 2 (lower is better)
Translates to: HLLCDRDADLMVTFLFKETLLQE*HSYRCA
Trigger: TGCACATCTGTAGGAATGGCACTCTTGGAGTAGTGT...TTCTTTGAAAAGGAATGTCACCATCAGGTCTGCATCTCTGTCACACAGTAGGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10
3UTR-3UTR TCA 90 bp CACCTACTGTGTGACAGAGATGCAGACCTGATGGTGACATTCCTTTTCAAAGAAACATCTCATGTAGAATaGTGTTCTCAGGGTATGAAG +
Preference number: 2 (lower is better)
Translates to: HLLCDRDADLMVTFLFKETSHVE*CSQGMK
Trigger: CTTCATACCCTGAGAACATCATTCTACATGAGATGT...TTCTTTGAAAAGGAATGTCACCATCAGGTCTGCATCTCTGTCACACAGTAGGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10
3UTR-3UTR CAA 90 bp AGGCTAGCCTCAAACTTGAAGAAGCCCCTGCCTCTGCCTCCCGAGTGCTGGGACTCCTGGCAGACTGGGTaGGCTGAGCCCCAGGGTAAC +
Preference number: 3 (lower is better)
Translates to: RLASNLKKPLPLPPECWDSWQTG*AEPQGN
Trigger: GTTACCCTGGGGCTCAGCCAACCCAGTCTGCCAGGA...GTCCCAGCACTCGGGAGGCAGAGGCAGGGGCTTCTTCAAGTTTGAGGCTAGCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10
3UTR GCA 72 bp CCTGCCTCTGCCTCCCGAGTGCTGGGACTAACAGTGTaGACACCACACCCAGCCAGACGACATTCCCTGGAG +
Preference number: 3 (lower is better)
Translates to: PASASRVLGLTV*TPHPARRHSLE
Trigger: CTCCAGGGAATGTCGTCTGGCTGGGTGTGGTGTGCACACTGTTAGTCCCAGCACTCGGGAGGCAGAGGCAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10
3UTR TCA 72 bp CTTGCCCCTGGAGACCCAGGTCTCTGTATCCCACTCTaGCTCAAGAGAGGCCAGTTCCTGGCCTGTGAATCT +
Preference number: 3 (lower is better)
Translates to: LAPGDPGLCIPL*LKRGQFLACES
Trigger: AGATTCACAGGCCAGGAACTGGCCTCTCTTGAGTCAGAGTGGGATACAGAGACCTGGGTCTCCAGGGGCAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10
3UTR CCA 72 bp GTGGGCTCAGGTCCTCAGATCTCAGTCACTTGCCCCTaGAGACCCAGGTCTCTGTATCCCACTCTGACTCAA +
Preference number: 3 (lower is better)
Translates to: VGSGPQISVTCP*RPRSLYPTLTQ
Trigger: TTGAGTCAGAGTGGGATACAGAGACCTGGGTCTCCAGGGGCAAGTGACTGAGATCTGAGGACCTGAGCCCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10
3UTR CCA 72 bp GCTTGTTACTTCTCTATGGAACAGATGACCCAGGTGTaGGCTCAGGTCCTCAGATCTCAGTCACTTGCCCCT +
Preference number: 3 (lower is better)
Translates to: ACYFSMEQMTQV*AQVLRSQSLAP
Trigger: AGGGGCAAGTGACTGAGATCTGAGGACCTGAGCCCACACCTGGGTCATCTGTTCCATAGAGAAGTAACAAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10
3UTR CCA 72 bp AACAAGCACTTCAGTCTGTGGCCTCTACCCCTACCATaGTGTGCTAGGGACCCATTCTTCACAGAAGCAAAG +
Preference number: 3 (lower is better)
Translates to: NKHFSLWPLPLP*CARDPFFTEAK
Trigger: CTTTGCTTCTGTGAAGAATGGGTCCCTAGCACACCATGGTAGGGGTAGAGGCCACAGACTGAAGTGCTTGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10
3UTR-3UTR CAA 90 bp AGAATGAACCAAAAGTTATGTGCAAACAGTAAGTTTTCTCCTCCAGCCCAAAGCTCCTGGCAGACTGGGTaGGCTGAGCCCCAGGGTAAC +
Preference number: 3 (lower is better)
Translates to: RMNQKLCANSKFSPPAQSSWQTG*AEPQGN
Trigger: GTTACCCTGGGGCTCAGCCAACCCAGTCTGCCAGGA...GCTTTGGGCTGGAGGAGAAAACTTACTGTTTGCACATAACTTTTGGTTCATTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10
3UTR-3UTR CAA 90 bp AACAGTGTGCACACCACACCCAGCCAGACGACATTCCCTGGAGTAGCTGCTGACAAATATAAAGAGGACTaGAATGCCTATGCTGAGCAC +
Preference number: 3 (lower is better)
Translates to: NSVHTTPSQTTFPGVAADKYKED*NAYAEH
Trigger: GTGCTCAGCATAGGCATTCAAGTCCTCTTTATATTT...GTCAGCAGCTACTCCAGGGAATGTCGTCTGGCTGGGTGTGGTGTGCACACTGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10
3UTR TCA 72 bp GAGCTGGTTATGCTTGTTACTTCTCTATGGAACAGATaGCCCAGGTGTGGGCTCAGGTCCTCAGATCTCAGT +
Preference number: 3 (lower is better)
Translates to: ELVMLVTSLWNR*PRCGLRSSDLS
Trigger: ACTGAGATCTGAGGACCTGAGCCCACACCTGGGTCATCTGTTCCATAGAGAAGTAACAAGCATAACCAGCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10
3UTR GCA 72 bp ACTCCAAGAGTGCCATTCCTACAGATGTGCATTGTGTaGCTCTCTGATGGTTCTGGACGTCTGTTCTCCACT +
Preference number: 3 (lower is better)
Translates to: TPRVPFLQMCIV*LSDGSGRLFST
Trigger: AGTGGAGAACAGACGTCCAGAACCATCAGAGAGGCACACAATGCACATCTGTAGGAATGGCACTCTTGGAGT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10
3UTR GCA 72 bp CCTGGAGTAGCTGCTGACACCTTTAAGAGCTGGTTATaGTTGTTACTTCTCTATGGAACAGATGACCCAGGT +
Preference number: 3 (lower is better)
Translates to: PGVAADTFKSWL*LLLLYGTDDPG
Trigger: ACCTGGGTCATCTGTTCCATAGAGAAGTAACAAGCATAACCAGCTCTTAAAGGTGTCAGCAGCTACTCCAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10
3UTR CCA 72 bp ACATTCCCTGGAGTAGCTGCTGACACCTTTAAGAGCTaGTTATGCTTGTTACTTCTCTATGGAACAGATGAC +
Preference number: 3 (lower is better)
Translates to: TFPGVAADTFKS*LCLLLLYGTDD
Trigger: GTCATCTGTTCCATAGAGAAGTAACAAGCATAACCAGCTCTTAAAGGTGTCAGCAGCTACTCCAGGGAATGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10
3UTR-3UTR CAA 90 bp TCTTCACAGAAGCAAAGCCATGCTTGTCCAAGTTGCTGGACTGACCACATCTTTAAATATAAAGAGGACTaGAATGCCTATGCTGAGCAC +
Preference number: 3 (lower is better)
Translates to: SSQKQSHACPSCWTDHIFKYKED*NAYAEH
Trigger: GTGCTCAGCATAGGCATTCAAGTCCTCTTTATATTT...AAAGATGTGGTCAGTCCAGCAACTTGGACAAGCATGGCTTTGCTTCTGTGAAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10
3UTR GCA 72 bp CATTCTTCACAGAAGCAAAGCCATGCTTGTCCAAGTTaGTGGACTGACCACATCTTTTATTTCATACATTGT +
Preference number: 3 (lower is better)
Translates to: HSSQKQSHACPS*WTDHIFYFIHC
Trigger: ACAATGTATGAAATAAAAGATGTGGTCAGTCCAGCAACTTGGACAAGCATGGCTTTGCTTCTGTGAAGAATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10
3UTR CCA 72 bp TCTTCACAGAAGCAAAGCCATGCTTGTCCAAGTTGCTaGACTGACCACATCTTTTATTTCATACATTGTGTA +
Preference number: 3 (lower is better)
Translates to: SSQKQSHACPSC*TDHIFYFIHCV
Trigger: TACACAATGTATGAAATAAAAGATGTGGTCAGTCCAGCAACTTGGACAAGCATGGCTTTGCTTCTGTGAAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10
3UTR CCA 72 bp CAGATCATAGACATGATAAATATTCTCATTTCCACGTaGTCTACCACTGAAAACCAGTCAAACCACTTAGCT +
Preference number: 3 (lower is better)
Translates to: QIIDMINILIST*STTENQSNHLA
Trigger: AGCTAAGTGGTTTGACTGGTTTTCAGTGGTAGACCACGTGGAAATGAGAATATTTATCATGTCTATGATCTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10
3UTR CCA 72 bp AAGCCTTTATTGCTTGCATATAAACTAATCTGTGTTTaGGAAGAATGGTTTCCAGCAAGGCTCATTTGTAGC +
Preference number: 3 (lower is better)
Translates to: KPLLLAYKLICV*EEWFPARLICS
Trigger: GCTACAAATGAGCCTTGCTGGAAACCATTCTTCCCAAACACAGATTAGTTTATATGCAAGCAATAAAGGCTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092996.5
CDS-3UTR TCA 90 bp TCTGCCTCCCGAGTGCTGGGACTAACAGTGTGCACACCACACCCAGCCAGACGAGTGGCGGCCCAGCGCTaGAGGCTCTGCTCCGCAGGC +
Preference number: 4 (lower is better)
Translates to: SASRVLGLTVCTPHPARRVAAQR*RLCSAG
Trigger: GCCTGCGGAGCAGAGCCTTCAGCGCTGGGCCGCCAC...TCGTCTGGCTGGGTGTGGTGTGCACACTGTTAGTCCCAGCACTCGGGAGGCAGA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10
CDS-3UTR TCA 90 bp GAGGTTCCTCTGGGAGACAAAGCTTCCTCTTCAGCAAGCCAATCCTGCATCTGGTCTCCGCCACATCCCTaGGCCCATGGCCGCGAGGGA +
Preference number: 4 (lower is better)
Translates to: EVPLGDKASSSASQSCIWSPPHP*AHGREG
Trigger: TCCCTCGCGGCCATGGGCTCAGGGATGTGGCGGAGA...CCAGATGCAGGATTGGCTTGCTGAAGAGGAAGCTTTGTCTCCCAGAGGAACCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10
CDS-3UTR TCA 90 bp TATATAGAGGTTCCTCTGGGAGACAAAGCTTCCTCTTCAGCAAGCCAATCCTGCTCTCCGCCACATCCCTaGGCCCATGGCCGCGAGGGA +
Preference number: 4 (lower is better)
Translates to: YIEVPLGDKASSSASQSCSPPHP*AHGREG
Trigger: TCCCTCGCGGCCATGGGCTCAGGGATGTGGCGGAGA...GCAGGATTGGCTTGCTGAAGAGGAAGCTTTGTCTCCCAGAGGAACCTCTATATA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10
CDS-3UTR TCA 90 bp AGAATGAACCAAAAGTTATGTGCAAACAGTAAGTTTTCTCCTCCAGCCCAAAGCGTGGCGGCCCAGCGCTaGAGGCTCTGCTCCGCAGGC +
Preference number: 4 (lower is better)
Translates to: RMNQKLCANSKFSPPAQSVAAQR*RLCSAG
Trigger: GCCTGCGGAGCAGAGCCTTCAGCGCTGGGCCGCCAC...GCTTTGGGCTGGAGGAGAAAACTTACTGTTTGCACATAACTTTTGGTTCATTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10
CDS-3UTR GCA 90 bp GTGCACACCACACCCAGCCAGACGACATTCCCTGGAGTAGCTGCTGACACCTTTAAGGCTTCCCAATGCTaGGATGCCGTTGTTTCTCCA +
Preference number: 4 (lower is better)
Translates to: VHTTPSQTTFPGVAADTFKASQC*DAVVSP
Trigger: TGGAGAAACAACGGCATCGCAGCATTGGGAAGCCTT...AAAGGTGTCAGCAGCTACTCCAGGGAATGTCGTCTGGCTGGGTGTGGTGTGCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10
CDS-3UTR GCA 90 bp TCTGCCTCCCGAGTGCTGGGACTAACAGTGTGCACACCACACCCAGCCAGACGAGTAATACACCCTGTATaGTCTGGCCACTCCATCAAT +
Preference number: 4 (lower is better)
Translates to: SASRVLGLTVCTPHPARRVIHPV*SGHSIN
Trigger: ATTGATGGAGTGGCCAGAGCATACAGGGTGTATTAC...TCGTCTGGCTGGGTGTGGTGTGCACACTGTTAGTCCCAGCACTCGGGAGGCAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10
CDS-3UTR CCA 90 bp AGTGTGCACACCACACCCAGCCAGACGACATTCCCTGGAGTAGCTGCTGACACCACACCCTGTATGCTCTaGCCACTCCATCAATCTCTT +
Preference number: 4 (lower is better)
Translates to: SVHTTPSQTTFPGVAADTTPCML*PLHQSL
Trigger: AAGAGATTGATGGAGTGGCCAGAGCATACAGGGTGT...GGTGTCAGCAGCTACTCCAGGGAATGTCGTCTGGCTGGGTGTGGTGTGCACACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10
CDS-3UTR TCA 90 bp GTGCACACCACACCCAGCCAGACGACATTCCCTGGAGTAGCTGCTGACACCTTTCCTCTTCTTCATGTGTaGCCTCATGTGTGCAGCAAT +
Preference number: 4 (lower is better)
Translates to: VHTTPSQTTFPGVAADTFPLLHV*PHVCSN
Trigger: ATTGCTGCACACATGAGGTCACACATGAAGAAGAGG...AAAGGTGTCAGCAGCTACTCCAGGGAATGTCGTCTGGCTGGGTGTGGTGTGCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10
CDS-3UTR TCA 90 bp CTCATGGTAGTTTCCTGGCAGACTGGGTTGGCTGAGCCCCAGGGTAACATCTCACTCCAATGGCAAAGGTaGGAGCTAAAGACTTCCAAG +
Preference number: 4 (lower is better)
Translates to: LMVVSWQTGLAEPQGNISLQWQR*ELKTSK
Trigger: CTTGGAAGTCTTTAGCTCTCACCTTTGCCATTGGAG...TGAGATGTTACCCTGGGGCTCAGCCAACCCAGTCTGCCAGGAAACTACCATGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10
CDS-3UTR GCA 90 bp AACAGTGTGCACACCACACCCAGCCAGACGACATTCCCTGGAGTAGCTGCTGACGTAATACACCCTGTATaGTCTGGCCACTCCATCAAT +
Preference number: 4 (lower is better)
Translates to: NSVHTTPSQTTFPGVAADVIHPV*SGHSIN
Trigger: ATTGATGGAGTGGCCAGAGCATACAGGGTGTATTAC...GTCAGCAGCTACTCCAGGGAATGTCGTCTGGCTGGGTGTGGTGTGCACACTGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10
CDS-3UTR CCA 90 bp CACTTGCCCCTGGAGACCCAGGTCTCTGTATCCCACTCTGACTCAAGAGAGGCCTTTGGTGTCCCTTTCTaGGTCAATGGTGATGAAAAG +
Preference number: 4 (lower is better)
Translates to: HLPLETQVSVSHSDSREAFGVPF*VNGDEK
Trigger: CTTTTCATCACCATTGACCCAGAAAGGGACACCAAA...GGCCTCTCTTGAGTCAGAGTGGGATACAGAGACCTGGGTCTCCAGGGGCAAGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10
CDS-3UTR TCA 90 bp AGGCTAGCCTCAAACTTGAAGAAGCCCCTGCCTCTGCCTCCCGAGTGCTGGGACCTATCTTTTCTTTCTTaGAGTACTTCATTCCAGCCA +
Preference number: 4 (lower is better)
Translates to: RLASNLKKPLPLPPECWDLSFLS*STSFQP
Trigger: TGGCTGGAATGAAGTACTTCAAGAAAGAAAAGATAG...GTCCCAGCACTCGGGAGGCAGAGGCAGGGGCTTCTTCAAGTTTGAGGCTAGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10
CDS-3UTR TCA 90 bp CGTCTGTTCTCCACTGGCTCTGACCACCCTGGCCCTTTAACTCATGGTAGTTTCTTGGGCTCTCCATTGTaGGTTGTAAGGGAAAATGGC +
Preference number: 4 (lower is better)
Translates to: RLFSTGSDHPGPLTHGSFLGSPL*VVRENG
Trigger: GCCATTTTCCCTTACAACTCACAATGGAGAGCCCAA...GAAACTACCATGAGTTAAAGGGCCAGGGTGGTCAGAGCCAGTGGAGAACAGACG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10
CDS-3UTR TCA 90 bp CGTCTGTTCTCCACTGGCTCTGACCACCCTGGCCCTTTAACTCATGGTAGTTTCCCTCTTCTTCATGTGTaGCCTCATGTGTGCAGCAAT +
Preference number: 4 (lower is better)
Translates to: RLFSTGSDHPGPLTHGSFPLLHV*PHVCSN
Trigger: ATTGCTGCACACATGAGGTCACACATGAAGAAGAGG...GAAACTACCATGAGTTAAAGGGCCAGGGTGGTCAGAGCCAGTGGAGAACAGACG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10
CDS-3UTR CCA 90 bp AACAGTGTGCACACCACACCCAGCCAGACGACATTCCCTGGAGTAGCTGCTGACTTTGGTGTCCCTTTCTaGGTCAATGGTGATGAAAAG +
Preference number: 4 (lower is better)
Translates to: NSVHTTPSQTTFPGVAADFGVPF*VNGDEK
Trigger: CTTTTCATCACCATTGACCCAGAAAGGGACACCAAA...GTCAGCAGCTACTCCAGGGAATGTCGTCTGGCTGGGTGTGGTGTGCACACTGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10
CDS-3UTR CCA 90 bp GAGGTTCCTCTGGGAGACAAAGCTTCCTCTTCAGCAAGCCAATCCTGCATCTGGTCGCAATGGCTTCTTTaGTGTCCCTTTCTGGGTCAA +
Preference number: 4 (lower is better)
Translates to: EVPLGDKASSSASQSCIWSQWLL*CPFLGQ
Trigger: TTGACCCAGAAAGGGACACCAAAGAAGCCATTGCGA...CCAGATGCAGGATTGGCTTGCTGAAGAGGAAGCTTTGTCTCCCAGAGGAACCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10
CDS-3UTR TCA 90 bp AGGTTCCTCTGGGAGACAAAGCTTCCTCTTCAGCAAGCCAATCCTGCATCTGGTTTGGGCTCTCCATTGTaGGTTGTAAGGGAAAATGGC +
Preference number: 4 (lower is better)
Translates to: RFLWETKLPLQQANPASGLGSPL*VVRENG
Trigger: GCCATTTTCCCTTACAACTCACAATGGAGAGCCCAA...ACCAGATGCAGGATTGGCTTGCTGAAGAGGAAGCTTTGTCTCCCAGAGGAACCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10
CDS-3UTR GCA 90 bp GTATATAGAGGTTCCTCTGGGAGACAAAGCTTCCTCTTCAGCAAGCCAATCCTGAAGGCTTCCCAATGCTaGGATGCCGTTGTTTCTCCA +
Preference number: 4 (lower is better)
Translates to: VYRGSSGRQSFLFSKPILKASQC*DAVVSP
Trigger: TGGAGAAACAACGGCATCGCAGCATTGGGAAGCCTT...CAGGATTGGCTTGCTGAAGAGGAAGCTTTGTCTCCCAGAGGAACCTCTATATAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10
3UTR CAA 72 bp ACACTACTCCAAGAGTGCCATTCCTACAGATGTGCATaGTGTGCCTCTCTGATGGTTCTGGACGTCTGTTCT +
Preference number: 4 (lower is better)
Translates to: TLLQECHSYRCA*CASLMVLDVCS
Trigger: AGAACAGACGTCCAGAACCATCAGAGAGGCACACAATGCACATCTGTAGGAATGGCACTCTTGGAGTAGTGT
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10
CDS-3UTR CCA 90 bp TATATAGAGGTTCCTCTGGGAGACAAAGCTTCCTCTTCAGCAAGCCAATCCTGCTCGCAATGGCTTCTTTaGTGTCCCTTTCTGGGTCAA +
Preference number: 4 (lower is better)
Translates to: YIEVPLGDKASSSASQSCSQWLL*CPFLGQ
Trigger: TTGACCCAGAAAGGGACACCAAAGAAGCCATTGCGA...GCAGGATTGGCTTGCTGAAGAGGAAGCTTTGTCTCCCAGAGGAACCTCTATATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10
CDS-3UTR TCA 90 bp GTATATAGAGGTTCCTCTGGGAGACAAAGCTTCCTCTTCAGCAAGCCAATCCTGCTATCTTTTCTTTCTTaGAGTACTTCATTCCAGCCA +
Preference number: 4 (lower is better)
Translates to: VYRGSSGRQSFLFSKPILLSFLS*STSFQP
Trigger: TGGCTGGAATGAAGTACTTCAAGAAAGAAAAGATAG...CAGGATTGGCTTGCTGAAGAGGAAGCTTTGTCTCCCAGAGGAACCTCTATATAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10
CDS CCA 90 bp AGACCCGGCTTGACCGCCCTTGGGCTCCGGACCGGCCCCCGGCGGTaGCGGCCCAGCGCTGAAGGCTCTGCTCCGCAGGCAGGAGCACGC +
Preference number: 5 (lower is better)
Translates to: RPGLTALGLRTGPRR*RPSAEGSAPQAGAR
Trigger: GCGTGCTCCTGCCTGCGGAGCAGAGCCTTCAGCGCTGGGCCGCCACCGCCGGGGGCCGGTCCGGAGCCCAAGGGCGGTCAAGCCGGGTCT
77% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10
CDS TCA 90 bp GGCAGGAGCACGCTTCCTCCGGTCTCGGCCTCTCCGCCACATCCCTaGGCCCATGGCCGCGAGGGAACAGACGCCAGAGCTGGCGACACT +
Preference number: 5 (lower is better)
Translates to: GRSTLPPVSASPPHP*AHGREGTDARAGDT
Trigger: AGTGTCGCCAGCTCTGGCGTCTGTTCCCTCGCGGCCATGGGCTCAGGGATGTGGCGGAGAGGCCGAGACCGGAGGAAGCGTGCTCCTGCC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10
CDS-3UTR CAA 90 bp AGCCCCTGCCTCTGCCTCCCGAGTGCTGGGACTAACAGTGTGCACACCACACCCGTCGCAATGGCTTCTTaGGTGTCCCTTTCTGGGTCA +
Preference number: 5 (lower is better)
Translates to: SPCLCLPSAGTNSVHTTPVAMAS*VSLSGS
Trigger: TGACCCAGAAAGGGACACCAAAGAAGCCATTGCGAC...GGGTGTGGTGTGCACACTGTTAGTCCCAGCACTCGGGAGGCAGAGGCAGGGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10
CDS-3UTR CAA 90 bp AGCCCCTGCCTCTGCCTCCCGAGTGCTGGGACTAACAGTGTGCACACCACACCCAAAGTGGAGTTAAATTaGGCAGGGATGGAATACTGT +
Preference number: 5 (lower is better)
Translates to: SPCLCLPSAGTNSVHTTPKVELN*AGMEYC
Trigger: ACAGTATTCCATCCCTGCCAAATTTAACTCCACTTT...GGGTGTGGTGTGCACACTGTTAGTCCCAGCACTCGGGAGGCAGAGGCAGGGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10
CDS-3UTR CAA 90 bp GAGGTTCCTCTGGGAGACAAAGCTTCCTCTTCAGCAAGCCAATCCTGCATCTGGGTCGCAATGGCTTCTTaGGTGTCCCTTTCTGGGTCA +
Preference number: 5 (lower is better)
Translates to: EVPLGDKASSSASQSCIWVAMAS*VSLSGS
Trigger: TGACCCAGAAAGGGACACCAAAGAAGCCATTGCGAC...CCAGATGCAGGATTGGCTTGCTGAAGAGGAAGCTTTGTCTCCCAGAGGAACCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10
CDS-3UTR CAA 90 bp TGTGCTAGGGACCCATTCTTCACAGAAGCAAAGCCATGCTTGTCCAAGTTGCTGAATGCTGCGATGCCGTaGTTTCTCCAGCTTTTCTAT +
Preference number: 5 (lower is better)
Translates to: CARDPFFTEAKPCLSKLLNAAMP*FLQLFY
Trigger: ATAGAAAAGCTGGAGAAACAACGGCATCGCAGCATT...CAGCAACTTGGACAAGCATGGCTTTGCTTCTGTGAAGAATGGGTCCCTAGCACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092996.5
CDS TCA 72 bp GCTCCGGACCGGCCCCCGGCGGTGGCGGCCCAGCGCTaGAGGCTCTGCTCCGCAGGCAGGAGCACGCTTCCT +
Preference number: 6 (lower is better)
Translates to: APDRPPAVAAQR*RLCSAGRSTLP
Trigger: AGGAAGCGTGCTCCTGCCTGCGGAGCAGAGCCTTCAGCGCTGGGCCGCCACCGCCGGGGGCCGGTCCGGAGC
76% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10
CDS CCA 72 bp TTGACCGCCCTTGGGCTCCGGACCGGCCCCCGGCGGTaGCGGCCCAGCGCTGAAGGCTCTGCTCCGCAGGCA +
Preference number: 6 (lower is better)
Translates to: LTALGLRTGPRR*RPSAEGSAPQA
Trigger: TGCCTGCGGAGCAGAGCCTTCAGCGCTGGGCCGCCACCGCCGGGGGCCGGTCCGGAGCCCAAGGGCGGTCAA
76% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10
CDS CAA 90 bp AGACTTCCAAGAAACAGGCCCAGGCTTCGGGCGGTGAGACCCGGCTaGACCGCCCTTGGGCTCCGGACCGGCCCCCGGCGGTGGCGGCCC +
Preference number: 6 (lower is better)
Translates to: RLPRNRPRLRAVRPG*TALGLRTGPRRWRP
Trigger: GGGCCGCCACCGCCGGGGGCCGGTCCGGAGCCCAAGGGCGGTCAAGCCGGGTCTCACCGCCCGAAGCCTGGGCCTGTTTCTTGGAAGTCT
73% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10
CDS CCA 72 bp TCCGGTCTCGGCCTCTCCGCCACATCCCTGAGCCCATaGCCGCGAGGGAACAGACGCCAGAGCTGGCGACAC +
Preference number: 6 (lower is better)
Translates to: SGLGLSATSLSP*PRGNRRQSWRH
Trigger: GTGTCGCCAGCTCTGGCGTCTGTTCCCTCGCGGCCATGGGCTCAGGGATGTGGCGGAGAGGCCGAGACCGGA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10
CDS GCA 72 bp TGGCCGCGAGGGAACAGACGCCAGAGCTGGCGACACTaGGACCTCACCACTGCGGCGCGTACAAGTGCTGCC +
Preference number: 6 (lower is better)
Translates to: WPRGNRRQSWRH*DLTTAARTSAA
Trigger: GGCAGCACTTGTACGCGCCGCAGTGGTGAGGTCGCAGTGTCGCCAGCTCTGGCGTCTGTTCCCTCGCGGCCA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10
CDS CCA 72 bp CTGAGCCCATGGCCGCGAGGGAACAGACGCCAGAGCTaGCGACACTGCGACCTCACCACTGCGGCGCGTACA +
Preference number: 6 (lower is better)
Translates to: LSPWPRGNRRQS*RHCDLTTAART
Trigger: TGTACGCGCCGCAGTGGTGAGGTCGCAGTGTCGCCAGCTCTGGCGTCTGTTCCCTCGCGGCCATGGGCTCAG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092996.5
ENSMUST00000108690.10