Pregenerated sensors for SCNM1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000092607Ensembl transcript IDs: ENSMUST00000172572.9, ENSMUST00000173462.3
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GTCAAACTCAACATTTTCATCCTTTATCCATCGACCTCGTCCATCTaGGACCCATCCAGAGCTTCGGAGGGTAAGGTAATGGTTCAGGAC | + |
|
Preference number: 1 (lower is better) Translates to: VKLNIFILYPSTSSI*DPSRASEGKVMVQD Trigger: GTCCTGAACCATTACCTTACCCTCCGAAGCTCTGGATGGGTCCCAGATGGACGAGGTCGATGGATAAAGGATGAAAATGTTGAGTTTGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172572.9 |
||
| 3UTR GCA 72 bp | ACCGGACTCCAGGATCAGTGTGCTCCCAGGACCCACTaGAGTTTATTTGTAGGACAAATGGGGAAAGGGGTT | + |
|
Preference number: 3 (lower is better) Translates to: TGLQDQCAPRTH*SLFVGQMGKGV Trigger: AACCCCTTTCCCCATTTGTCCTACAAATAAACTGCAGTGGGTCCTGGGAGCACACTGATCCTGGAGTCCGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172572.9 |
||
| 3UTR CCA 72 bp | AACATTTTCATCCTTTATCCATCGACCTCGTCCATCTaGGACCCATCCAGAGCTTCGGAGGGTAAGGTAATG | + |
|
Preference number: 3 (lower is better) Translates to: NIFILYPSTSSI*DPSRASEGKVM Trigger: CATTACCTTACCCTCCGAAGCTCTGGATGGGTCCCAGATGGACGAGGTCGATGGATAAAGGATGAAAATGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172572.9 |
||
| CDS-3UTR CCA 90 bp | GGGCTGAAAGCAGCTGACGCTTGGCAAGGTTTTGAGAGAAAGTGGAGGAGGGGCTTCTTGCCTGCACGGTaGGCTGTCAACATGGCCAGC | + |
|
Preference number: 4 (lower is better) Translates to: GLKAADAWQGFERKWRRGFLPAR*AVNMAS Trigger: GCTGGCCATGTTGACAGCCCACCGTGCAGGCAAGAA...GCCCCTCCTCCACTTTCTCTCAAAACCTTGCCAAGCGTCAGCTGCTTTCAGCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172572.9 |
||
| CDS-3UTR CCA 90 bp | GCCAGCCTGCGAAGGAGCAGACTTGAAATCCTGAGACTGAACAAGGAACCGGACGTCGATGGGGGCAGATaGCACAAGCAAAGCGTCCAT | + |
|
Preference number: 4 (lower is better) Translates to: ASLRRSRLEILRLNKEPDVDGGR*HKQSVH Trigger: ATGGACGCTTTGCTTGTGCCATCTGCCCCCATCGAC...GTCCGGTTCCTTGTTCAGTCTCAGGATTTCAAGTCTGCTCCTTCGCAGGCTGGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000172572.9 |
||
| CDS-3UTR TCA 90 bp | TTTATCCATCGACCTCGTCCATCTGGGACCCATCCAGAGCTTCGGAGGGTAAGGTTGAGCACATTGAGTTaGCTCCAGTCGTCCCCTTCC | + |
|
Preference number: 4 (lower is better) Translates to: FIHRPRPSGTHPELRRVRLSTLS*LQSSPS Trigger: GGAAGGGGACGACTGGAGTCAACTCAATGTGCTCAA...CCTTACCCTCCGAAGCTCTGGATGGGTCCCAGATGGACGAGGTCGATGGATAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172572.9 |
||
| CDS-3UTR GCA 90 bp | GGGCTGAAAGCAGCTGACGCTTGGCAAGGTTTTGAGAGAAAGTGGAGGAGGGGCTTCAGACTGGACAAATaGTTCTTGCCTGCACGGTGG | + |
|
Preference number: 4 (lower is better) Translates to: GLKAADAWQGFERKWRRGFRLDK*FLPARW Trigger: CCACCGTGCAGGCAAGAAGCATTTGTCCAGTCTGAA...GCCCCTCCTCCACTTTCTCTCAAAACCTTGCCAAGCGTCAGCTGCTTTCAGCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172572.9 |
||
| CDS-3UTR GCA 90 bp | GCCAGCCTGCGAAGGAGCAGACTTGAAATCCTGAGACTGAACAAGGAACCGGACCTGGAGTTGGACCTCTaGAGTTGGCAAAGGAGGACT | + |
|
Preference number: 4 (lower is better) Translates to: ASLRRSRLEILRLNKEPDLELDL*SWQRRT Trigger: AGTCCTCCTTTGCCAACTGCAGAGGTCCAACTCCAG...GTCCGGTTCCTTGTTCAGTCTCAGGATTTCAAGTCTGCTCCTTCGCAGGCTGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172572.9 |
||
| CDS-3UTR CCA 90 bp | CAGAGTCAAACTCAACATTTTCATCCTTTATCCATCGACCTCGTCCATCTGGGAGGGAGCAGGGGCTTCTaGTCTGTGCTTCCTCCGGCA | + |
|
Preference number: 4 (lower is better) Translates to: QSQTQHFHPLSIDLVHLGGSRGF*SVLPPA Trigger: TGCCGGAGGAAGCACAGACCAGAAGCCCCTGCTCCC...TCCCAGATGGACGAGGTCGATGGATAAAGGATGAAAATGTTGAGTTTGACTCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172572.9 |
||
| CDS-3UTR CCA 90 bp | GGAGTGGCCAGCCTGCGAAGGAGCAGACTTGAAATCCTGAGACTGAACAAGGAAGTGATGATTCGAGTCTaGGTTAGCAAAGGAGCCTCA | + |
|
Preference number: 4 (lower is better) Translates to: GVASLRRSRLEILRLNKEVMIRV*VSKGAS Trigger: TGAGGCTCCTTTGCTAACCCAGACTCGAATCATCAC...TTCCTTGTTCAGTCTCAGGATTTCAAGTCTGCTCCTTCGCAGGCTGGCCACTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172572.9 |
||
| CDS-3UTR CCA 90 bp | GGAGTGGCCAGCCTGCGAAGGAGCAGACTTGAAATCCTGAGACTGAACAAGGAACTGTGTAGAGCATTCTaGGTGATGATTCGAGTCTGG | + |
|
Preference number: 4 (lower is better) Translates to: GVASLRRSRLEILRLNKELCRAF*VMIRVW Trigger: CCAGACTCGAATCATCACCCAGAATGCTCTACACAG...TTCCTTGTTCAGTCTCAGGATTTCAAGTCTGCTCCTTCGCAGGCTGGCCACTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172572.9 |
||
| CDS-3UTR GCA 90 bp | GGAGTGGCCAGCCTGCGAAGGAGCAGACTTGAAATCCTGAGACTGAACAAGGAATTTGCTCTGTTCCCTTaGCTGTTTGCTTTTTGCCAT | + |
|
Preference number: 4 (lower is better) Translates to: GVASLRRSRLEILRLNKEFALFP*LFAFCH Trigger: ATGGCAAAAAGCAAACAGGCAAGGGAACAGAGCAAA...TTCCTTGTTCAGTCTCAGGATTTCAAGTCTGCTCCTTCGCAGGCTGGCCACTCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000172572.9 |
||
| CDS-3UTR GCA 90 bp | TTTATCCATCGACCTCGTCCATCTGGGACCCATCCAGAGCTTCGGAGGGTAAGGAAGGAGCCTCAGTTTTaGTTTCTGTCTTCAATTCGT | + |
|
Preference number: 4 (lower is better) Translates to: FIHRPRPSGTHPELRRVRKEPQF*FLSSIR Trigger: ACGAATTGAAGACAGAAAGCAAAACTGAGGCTCCTT...CCTTACCCTCCGAAGCTCTGGATGGGTCCCAGATGGACGAGGTCGATGGATAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172572.9 |
||
| CDS-3UTR CCA 90 bp | CTTCCTCATCAGAGTCAAACTCAACATTTTCATCCTTTATCCATCGACCTCGTCGTTTGGTGGGGCTCATaGGTGCAGAGGCCAAGAGAG | + |
|
Preference number: 4 (lower is better) Translates to: LPHQSQTQHFHPLSIDLVVWWGS*VQRPRE Trigger: CTCTCTTGGCCTCTGCACCCATGAGCCCCACCAAAC...GACGAGGTCGATGGATAAAGGATGAAAATGTTGAGTTTGACTCTGATGAGGAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172572.9 |
||
| CDS-3UTR CCA 90 bp | TCTTCCTCATCAGAGTCAAACTCAACATTTTCATCCTTTATCCATCGACCTCGTTTGGCAAAGGAGGACTaGAGACAGAGGGAGCAGGGG | + |
|
Preference number: 4 (lower is better) Translates to: SSSSESNSTFSSFIHRPRLAKED*RQREQG Trigger: CCCCTGCTCCCTCTGTCTCCAGTCCTCCTTTGCCAA...ACGAGGTCGATGGATAAAGGATGAAAATGTTGAGTTTGACTCTGATGAGGAAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172572.9 |
||
| CDS-3UTR GCA 90 bp | CATCAGAGTCAAACTCAACATTTTCATCCTTTATCCATCGACCTCGTCCATCTGTGGACAAATGCTTCTTaGCTGCACGGTGGGCTGTCA | + |
|
Preference number: 4 (lower is better) Translates to: HQSQTQHFHPLSIDLVHLWTNAS*LHGGLS Trigger: TGACAGCCCACCGTGCAGGCAAGAAGCATTTGTCCA...CAGATGGACGAGGTCGATGGATAAAGGATGAAAATGTTGAGTTTGACTCTGATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172572.9 |
||
| CDS-3UTR CCA 90 bp | CATCAGAGTCAAACTCAACATTTTCATCCTTTATCCATCGACCTCGTCCATCTGTCTAGTACTGGTCGATaGGGGCAGATGGCACAAGCA | + |
|
Preference number: 4 (lower is better) Translates to: HQSQTQHFHPLSIDLVHLSSTGR*GQMAQA Trigger: TGCTTGTGCCATCTGCCCCCATCGACCAGTACTAGA...CAGATGGACGAGGTCGATGGATAAAGGATGAAAATGTTGAGTTTGACTCTGATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172572.9 |
||
| CDS-3UTR CCA 90 bp | AGGAGCAGACTTGAAATCCTGAGACTGAACAAGGAACCGGACTCCAGGATCAGTAGAAAAGCTTCAGACTaGACAAATGCTTCTTGCCTG | + |
|
Preference number: 4 (lower is better) Translates to: RSRLEILRLNKEPDSRISRKASD*TNASCL Trigger: CAGGCAAGAAGCATTTGTCCAGTCTGAAGCTTTTCT...ACTGATCCTGGAGTCCGGTTCCTTGTTCAGTCTCAGGATTTCAAGTCTGCTCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172572.9 |
||
| CDS-3UTR CCA 90 bp | TCTTCCTCATCAGAGTCAAACTCAACATTTTCATCCTTTATCCATCGACCTCGTCTGATCTCTGCACTCTaGAGTTGGACCTCTGCAGTT | + |
|
Preference number: 4 (lower is better) Translates to: SSSSESNSTFSSFIHRPRLISAL*SWTSAV Trigger: AACTGCAGAGGTCCAACTCCAGAGTGCAGAGATCAG...ACGAGGTCGATGGATAAAGGATGAAAATGTTGAGTTTGACTCTGATGAGGAAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172572.9 |
||
| CDS-3UTR GCA 90 bp | GGCTCTTCCTCATCAGAGTCAAACTCAACATTTTCATCCTTTATCCATCGACCTTGCTGTCTTGGATTTTaGTCTGTTCCCTTGCCTGTT | + |
|
Preference number: 4 (lower is better) Translates to: GSSSSESNSTFSSFIHRPCCLGF*SVPLPV Trigger: AACAGGCAAGGGAACAGAGCAAAATCCAAGACAGCA...AGGTCGATGGATAAAGGATGAAAATGTTGAGTTTGACTCTGATGAGGAAGAGCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172572.9 |
||
| CDS-3UTR CCA 90 bp | GCTCTTCCTCATCAGAGTCAAACTCAACATTTTCATCCTTTATCCATCGACCTCTTCGTTCTGCTGTCTTaGATTTTGCTCTGTTCCCTT | + |
|
Preference number: 4 (lower is better) Translates to: ALPHQSQTQHFHPLSIDLFVLLS*ILLCSL Trigger: AAGGGAACAGAGCAAAATCCAAGACAGCAGAACGAA...GAGGTCGATGGATAAAGGATGAAAATGTTGAGTTTGACTCTGATGAGGAAGAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172572.9 |
||
| CDS-3UTR GCA 90 bp | CTTCCTCATCAGAGTCAAACTCAACATTTTCATCCTTTATCCATCGACCTCGTCTGCCTGTTTGCTTTTTaGCATAGAAAAGCTTCAGAC | + |
|
Preference number: 4 (lower is better) Translates to: LPHQSQTQHFHPLSIDLVCLFAF*HRKASD Trigger: GTCTGAAGCTTTTCTATGGCAAAAAGCAAACAGGCA...GACGAGGTCGATGGATAAAGGATGAAAATGTTGAGTTTGACTCTGATGAGGAAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000172572.9 |
||
| CDS CCA 90 bp | GCACGGTGGGCTGTCAACATGGCCAGCGTGTCTAGTACTGGTCGATaGGGGCAGATGGCACAAGCAAAGCGTCCATCCCGCAGCATCAGT | + |
|
Preference number: 5 (lower is better) Translates to: ARWAVNMASVSSTGR*GQMAQAKRPSRSIS Trigger: ACTGATGCTGCGGGATGGACGCTTTGCTTGTGCCATCTGCCCCCATCGACCAGTACTAGACACGCTGGCCATGTTGACAGCCCACCGTGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000172572.9 ENSMUST00000173462.3 |
||
| CDS CCA 90 bp | TCAGACTGGACAAATGCTTCTTGCCTGCACGGTGGGCTGTCAACATaGCCAGCGTGTCTAGTACTGGTCGATGGGGGCAGATGGCACAAG | + |
|
Preference number: 5 (lower is better) Translates to: SDWTNASCLHGGLST*PACLVLVDGGRWHK Trigger: CTTGTGCCATCTGCCCCCATCGACCAGTACTAGACACGCTGGCCATGTTGACAGCCCACCGTGCAGGCAAGAAGCATTTGTCCAGTCTGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000172572.9 ENSMUST00000173462.3 |
||
| CDS CCA 90 bp | AGGTTCCTTACTGATCTCTGCACTCTGGAGTTGGACCTCTGCAGTTaGCAAAGGAGGACTGGAGACAGAGGGAGCAGGGGCTTCTGGTCT | + |
|
Preference number: 5 (lower is better) Translates to: RFLTDLCTLELDLCS*QRRTGDRGSRGFWS Trigger: AGACCAGAAGCCCCTGCTCCCTCTGTCTCCAGTCCTCCTTTGCCAACTGCAGAGGTCCAACTCCAGAGTGCAGAGATCAGTAAGGAACCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172572.9 |
||
| CDS CCA 90 bp | CTCTCCCTAGGCTCAGGTTCCTTACTGATCTCTGCACTCTGGAGTTaGACCTCTGCAGTTGGCAAAGGAGGACTGGAGACAGAGGGAGCA | + |
|
Preference number: 5 (lower is better) Translates to: LSLGSGSLLISALWS*TSAVGKGGLETEGA Trigger: TGCTCCCTCTGTCTCCAGTCCTCCTTTGCCAACTGCAGAGGTCCAACTCCAGAGTGCAGAGATCAGTAAGGAACCTGAGCCTAGGGAGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172572.9 |
||
| CDS-3UTR CAA 90 bp | TTCATCCTTTATCCATCGACCTCGTCCATCTGGGACCCATCCAGAGCTTCGGAGGTTGGACCTCTGCAGTaGGCAAAGGAGGACTGGAGA | + |
|
Preference number: 5 (lower is better) Translates to: FILYPSTSSIWDPSRASEVGPLQ*AKEDWR Trigger: TCTCCAGTCCTCCTTTGCCAACTGCAGAGGTCCAAC...CTCCGAAGCTCTGGATGGGTCCCAGATGGACGAGGTCGATGGATAAAGGATGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172572.9 |
||
| CDS CCA 90 bp | TCTGATCTCTCCCTAGGCTCAGGTTCCTTACTGATCTCTGCACTCTaGAGTTGGACCTCTGCAGTTGGCAAAGGAGGACTGGAGACAGAG | + |
|
Preference number: 5 (lower is better) Translates to: SDLSLGSGSLLISAL*SWTSAVGKGGLETE Trigger: CTCTGTCTCCAGTCCTCCTTTGCCAACTGCAGAGGTCCAACTCCAGAGTGCAGAGATCAGTAAGGAACCTGAGCCTAGGGAGAGATCAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172572.9 |
||
| CDS-3UTR CAA 90 bp | TTCATCCTTTATCCATCGACCTCGTCCATCTGGGACCCATCCAGAGCTTCGGAGCTGCTGTCTTGGATTTaGCTCTGTTCCCTTGCCTGT | + |
|
Preference number: 5 (lower is better) Translates to: FILYPSTSSIWDPSRASELLSWI*LCSLAC Trigger: ACAGGCAAGGGAACAGAGCAAAATCCAAGACAGCAG...CTCCGAAGCTCTGGATGGGTCCCAGATGGACGAGGTCGATGGATAAAGGATGAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172572.9 |
||
| CDS GCA 90 bp | TTTGCTTTTTGCCATAGAAAAGCTTCAGACTGGACAAATGCTTCTTaGCTGCACGGTGGGCTGTCAACATGGCCAGCGTGTCTAGTACTG | + |
|
Preference number: 5 (lower is better) Translates to: FAFCHRKASDWTNAS*LHGGLSTWPACLVL Trigger: CAGTACTAGACACGCTGGCCATGTTGACAGCCCACCGTGCAGGCAAGAAGCATTTGTCCAGTCTGAAGCTTTTCTATGGCAAAAAGCAAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000172572.9 ENSMUST00000173462.3 |
||
| CDS-3UTR CAA 90 bp | TCTTCCTCATCAGAGTCAAACTCAACATTTTCATCCTTTATCCATCGACCTCGTCTGGACAAATGCTTCTaGCCTGCACGGTGGGCTGTC | + |
|
Preference number: 5 (lower is better) Translates to: SSSSESNSTFSSFIHRPRLDKCF*PARWAV Trigger: GACAGCCCACCGTGCAGGCAAGAAGCATTTGTCCAG...ACGAGGTCGATGGATAAAGGATGAAAATGTTGAGTTTGACTCTGATGAGGAAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172572.9 |
||
| CDS-3UTR CAA 90 bp | GGCTCTTCCTCATCAGAGTCAAACTCAACATTTTCATCCTTTATCCATCGACCTTTTGAGCACATTGAGTaGACTCCAGTCGTCCCCTTC | + |
|
Preference number: 5 (lower is better) Translates to: GSSSSESNSTFSSFIHRPFEHIE*TPVVPF Trigger: GAAGGGGACGACTGGAGTCAACTCAATGTGCTCAAA...AGGTCGATGGATAAAGGATGAAAATGTTGAGTTTGACTCTGATGAGGAAGAGCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000172572.9 |
||
| CDS-3UTR CAA 90 bp | ACTCCAGGATCAGTGTGCTCCCAGGACCCACTGCAGTTTATTTGTAGGACAAATAAAGGAGCCTCAGTTTaGCTTTCTGTCTTCAATTCG | + |
|
Preference number: 5 (lower is better) Translates to: TPGSVCSQDPLQFICRTNKGASV*LSVFNS Trigger: CGAATTGAAGACAGAAAGCAAAACTGAGGCTCCTTT...ATTTGTCCTACAAATAAACTGCAGTGGGTCCTGGGAGCACACTGATCCTGGAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172572.9 |
||
| CDS CCA 72 bp | TGGCCAGCGTGTCTAGTACTGGTCGATGGGGGCAGATaGCACAAGCAAAGCGTCCATCCCGCAGCATCAGTG | + |
|
Preference number: 6 (lower is better) Translates to: WPACLVLVDGGR*HKQSVHPAASV Trigger: CACTGATGCTGCGGGATGGACGCTTTGCTTGTGCCATCTGCCCCCATCGACCAGTACTAGACACGCTGGCCA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000172572.9 ENSMUST00000173462.3 |
||
| CDS CCA 72 bp | GCTGTCAACATGGCCAGCGTGTCTAGTACTGGTCGATaGGGGCAGATGGCACAAGCAAAGCGTCCATCCCGC | + |
|
Preference number: 6 (lower is better) Translates to: AVNMASVSSTGR*GQMAQAKRPSR Trigger: GCGGGATGGACGCTTTGCTTGTGCCATCTGCCCCCATCGACCAGTACTAGACACGCTGGCCATGTTGACAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000172572.9 ENSMUST00000173462.3 |
||
| CDS GCA 72 bp | GATGGCACAAGCAAAGCGTCCATCCCGCAGCATCAGTaGCTCGTCCTCAGGGATGTAACTAGCCAGCAGGTC | + |
|
Preference number: 6 (lower is better) Translates to: DGTSKASIPQHQ*LVLRDVTSQQV Trigger: GACCTGCTGGCTAGTTACATCCCTGAGGACGAGGCACTGATGCTGCGGGATGGACGCTTTGCTTGTGCCATC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000172572.9 ENSMUST00000173462.3 |
||
| CDS CCA 72 bp | ACTGATCTCTGCACTCTGGAGTTGGACCTCTGCAGTTaGCAAAGGAGGACTGGAGACAGAGGGAGCAGGGGC | + |
|
Preference number: 6 (lower is better) Translates to: TDLCTLELDLCS*QRRTGDRGSRG Trigger: GCCCCTGCTCCCTCTGTCTCCAGTCCTCCTTTGCCAACTGCAGAGGTCCAACTCCAGAGTGCAGAGATCAGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172572.9 |
||
| CDS CCA 72 bp | ACAAATGCTTCTTGCCTGCACGGTGGGCTGTCAACATaGCCAGCGTGTCTAGTACTGGTCGATGGGGGCAGA | + |
|
Preference number: 6 (lower is better) Translates to: TNASCLHGGLST*PACLVLVDGGR Trigger: TCTGCCCCCATCGACCAGTACTAGACACGCTGGCCATGTTGACAGCCCACCGTGCAGGCAAGAAGCATTTGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000172572.9 ENSMUST00000173462.3 |
||
| CDS CAA 90 bp | TCTCTCCCTAGGCTCAGGTTCCTTACTGATCTCTGCACTCTGGAGTaGGACCTCTGCAGTTGGCAAAGGAGGACTGGAGACAGAGGGAGC | + |
|
Preference number: 6 (lower is better) Translates to: SLPRLRFLTDLCTLE*DLCSWQRRTGDRGS Trigger: GCTCCCTCTGTCTCCAGTCCTCCTTTGCCAACTGCAGAGGTCCAACTCCAGAGTGCAGAGATCAGTAAGGAACCTGAGCCTAGGGAGAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172572.9 |
||
| CDS CAA 90 bp | TTGGTGGGGCTCATGGGTGCAGAGGCCAAGAGAGCTGCTGACTCTTaGGCATCTGATCTCTCCCTAGGCTCAGGTTCCTTACTGATCTCT | + |
|
Preference number: 6 (lower is better) Translates to: LVGLMGAEAKRAADS*ASDLSLGSGSLLIS Trigger: AGAGATCAGTAAGGAACCTGAGCCTAGGGAGAGATCAGATGCCAAAGAGTCAGCAGCTCTCTTGGCCTCTGCACCCATGAGCCCCACCAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172572.9 |
||
| CDS CCA 72 bp | GGCTCAGGTTCCTTACTGATCTCTGCACTCTGGAGTTaGACCTCTGCAGTTGGCAAAGGAGGACTGGAGACA | + |
|
Preference number: 6 (lower is better) Translates to: GSGSLLISALWS*TSAVGKGGLET Trigger: TGTCTCCAGTCCTCCTTTGCCAACTGCAGAGGTCCAACTCCAGAGTGCAGAGATCAGTAAGGAACCTGAGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172572.9 |
||
| CDS CCA 72 bp | TCCCTAGGCTCAGGTTCCTTACTGATCTCTGCACTCTaGAGTTGGACCTCTGCAGTTGGCAAAGGAGGACTG | + |
|
Preference number: 6 (lower is better) Translates to: SLGSGSLLISAL*SWTSAVGKGGL Trigger: CAGTCCTCCTTTGCCAACTGCAGAGGTCCAACTCCAGAGTGCAGAGATCAGTAAGGAACCTGAGCCTAGGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172572.9 |
||
| CDS GCA 72 bp | TGCCATAGAAAAGCTTCAGACTGGACAAATGCTTCTTaGCTGCACGGTGGGCTGTCAACATGGCCAGCGTGT | + |
|
Preference number: 6 (lower is better) Translates to: CHRKASDWTNAS*LHGGLSTWPAC Trigger: ACACGCTGGCCATGTTGACAGCCCACCGTGCAGGCAAGAAGCATTTGTCCAGTCTGAAGCTTTTCTATGGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000172572.9 ENSMUST00000173462.3 |
||
| CDS CAA 90 bp | TTCTGGGTGATGATTCGAGTCTGGGTTAGCAAAGGAGCCTCAGTTTaGCTTTCTGTCTTCAATTCGTTCTGCTGTCTTGGATTTTGCTCT | + |
|
Preference number: 6 (lower is better) Translates to: FWVMIRVWVSKGASV*LSVFNSFCCLGFCS Trigger: AGAGCAAAATCCAAGACAGCAGAACGAATTGAAGACAGAAAGCAAAACTGAGGCTCCTTTGCTAACCCAGACTCGAATCATCACCCAGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000172572.9 ENSMUST00000173462.3 |
||
| CDS CAA 72 bp | ATGATTCGAGTCTGGGTTAGCAAAGGAGCCTCAGTTTaGCTTTCTGTCTTCAATTCGTTCTGCTGTCTTGGA | + |
|
Preference number: 6 (lower is better) Translates to: MIRVWVSKGASV*LSVFNSFCCLG Trigger: TCCAAGACAGCAGAACGAATTGAAGACAGAAAGCAAAACTGAGGCTCCTTTGCTAACCCAGACTCGAATCAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000172572.9 ENSMUST00000173462.3 |
||