RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SCN9A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000075316

Ensembl transcript IDs: ENSMUST00000100063.9, ENSMUST00000100064.9, ENSMUST00000112354.3, ENSMUST00000164384.9, ENSMUST00000169900.8

Found 582 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ATTGTACAAACAGAGAGGGGCATAAGACTGGGTAGCTGTTCTCTGTaGTGTGTGCCTGAAGTTCCAGCTAAGCAATTTTGTGGAAGAATC +
Preference number: 1 (lower is better)
Translates to: IVQTERGIRLGSCSL*CVPEVPAKQFCGRI
Trigger: GATTCTTCCACAAAATTGCTTAGCTGGAACTTCAGGCACACATCACAGAGAACAGCTACCCAGTCTTATGCCCCTCTCTGTTTGTACAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
3UTR TCA 90 bp TTTGTGTGGCTCACCATTAAGTTGCCCAAACATATTTCAGCTGCTTaGCAGATATGCAGTGCTCTGTATTGTCTGGCTTACCACTGCTTG +
Preference number: 1 (lower is better)
Translates to: FVWLTIKLPKHISAA*QICSALYCLAYHCL
Trigger: CAAGCAGTGGTAAGCCAGACAATACAGAGCACTGCATATCTGTCAAGCAGCTGAAATATGTTTGGGCAACTTAATGGTGAGCCACACAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
3UTR TCA 90 bp TCACAGCTAATCCTGTTTGTGTTTGTGACTGTGAGCATGTGCGCCTaGATTTCTATATTCACATGGGTACACATCTACTTAGAATCTAGG +
Preference number: 1 (lower is better)
Translates to: SQLILFVFVTVSMCA*ISIFTWVHIYLESR
Trigger: CCTAGATTCTAAGTAGATGTGTACCCATGTGAATATAGAAATTCAGGCGCACATGCTCACAGTCACAAACACAAACAGGATTAGCTGTGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
3UTR TCA 90 bp GGATTAATTCTCCATAGGGAAGGCATCAGTAATAAAGCAAGCCAGTaGGACTCACTCTTTGAATGCCGTTTCATTCATACTAAACACCTG +
Preference number: 1 (lower is better)
Translates to: GLILHREGISNKASQ*DSLFECRFIHTKHL
Trigger: CAGGTGTTTAGTATGAATGAAACGGCATTCAAAGAGTGAGTCTCACTGGCTTGCTTTATTACTGATGCCTTCCCTATGGAGAATTAATCC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
3UTR GCA 90 bp TCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCAAGTACCTAACTaGATTTCAGGGTACATCTCATTAGAAAGGAGACATTCAATTTGC +
Preference number: 1 (lower is better)
Translates to: SSHLLKQALKYQVPN*ISGYISLERRHSIC
Trigger: GCAAATTGAATGTCTCCTTTCTAATGAGATGTACCCTGAAATGCAGTTAGGTACTTGATACTTTAGCGCTTGTTTGAGCAGATGACTGGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
3UTR TCA 90 bp CCAAAGTTACATAAGAAGATAAATGTGGCAACTGGCTTTCAGATGTaGGTCATGAGCTGTCTCATTGGGCAAACTAGATTGGATAAATAT +
Preference number: 1 (lower is better)
Translates to: PKLHKKINVATGFQM*VMSCLIGQTRLDKY
Trigger: ATATTTATCCAATCTAGTTTGCCCAATGAGACAGCTCATGACTCACATCTGAAAGCCAGTTGCCACATTTATCTTCTTATGTAACTTTGG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
3UTR TCA 90 bp CTAATCCTTGGCAGGGTAACTCCAACTATCTCAAAATGCTCTATTTaGCCGATAAATGCAAAATCGATTTCACAGTATGGATTAGAATAT +
Preference number: 1 (lower is better)
Translates to: LILGRVTPTISKCSI*PINAKSISQYGLEY
Trigger: ATATTCTAATCCATACTGTGAAATCGATTTTGCATTTATCGGTCAAATAGAGCATTTTGAGATAGTTGGAGTTACCCTGCCAAGGATTAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
3UTR-3UTR TCA 90 bp GTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCAAGTACCGGTAGCTGTTCTCTGTaGTGTGTGCCTGAAGTTCCA +
Preference number: 2 (lower is better)
Translates to: VHTVLQSSAQTSAKVSSTGSCSL*CVPEVP
Trigger: TGGAACTTCAGGCACACATCACAGAGAACAGCTACC...GGTACTTGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
3UTR-3UTR TCA 90 bp GATGCAGTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCATTCAGATGTGAGTCATaGGCTGTCTCATTGGGCAAA +
Preference number: 2 (lower is better)
Translates to: DAVHTVLQSSAQTSAKVSFRCES*AVSLGK
Trigger: TTTGCCCAATGAGACAGCTCATGACTCACATCTGAA...TGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGACTGCATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
3UTR-3UTR TCA 90 bp GTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCAAGTACCACTGGCTTTCAGATGTaGGTCATGAGCTGTCTCATT +
Preference number: 2 (lower is better)
Translates to: VHTVLQSSAQTSAKVSSTTGFQM*VMSCLI
Trigger: AATGAGACAGCTCATGACTCACATCTGAAAGCCAGT...GGTACTTGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
3UTR-3UTR CCA 90 bp GTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCAAGTACCTCTCTCTTGTTTCACTaGATCAGAGCTAGTGGCTGT +
Preference number: 2 (lower is better)
Translates to: VHTVLQSSAQTSAKVSSTSLLFH*IRASGC
Trigger: ACAGCCACTAGCTCTGATCCAGTGAAACAAGAGAGA...GGTACTTGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
3UTR-3UTR CCA 90 bp GCTGTTCTCTGTGATGTGTGCCTGAAGTTCCAGCTAAGCAATTTTGTGGAAGAATCTCTCTTGTTTCACTaGATCAGAGCTAGTGGCTGT +
Preference number: 2 (lower is better)
Translates to: AVLCDVCLKFQLSNFVEESLLFH*IRASGC
Trigger: ACAGCCACTAGCTCTGATCCAGTGAAACAAGAGAGA...TTCTTCCACAAAATTGCTTAGCTGGAACTTCAGGCACACATCACAGAGAACAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
3UTR-3UTR CCA 90 bp GTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCAAGTACCGATAAATGTGGCAACTaGCTTTCAGATGTGAGTCAT +
Preference number: 2 (lower is better)
Translates to: VHTVLQSSAQTSAKVSSTDKCGN*LSDVSH
Trigger: ATGACTCACATCTGAAAGCCAGTTGCCACATTTATC...GGTACTTGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
3UTR-3UTR TCA 90 bp GTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCAAGTACCTGGCTGTGCTGCCTTTaGGAATATTTGATAAAAAGA +
Preference number: 2 (lower is better)
Translates to: VHTVLQSSAQTSAKVSSTWLCCL*EYLIKR
Trigger: TCTTTTTATCAAATATTCTCAAAGGCAGCACAGCCA...GGTACTTGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
3UTR-3UTR TCA 90 bp ACATTAAGGATTGTATTTAAGAGATGCAGTCCACACTGTGCTCCAGTCATCTGCTTCAGATGTGAGTCATaGGCTGTCTCATTGGGCAAA +
Preference number: 2 (lower is better)
Translates to: TLRIVFKRCSPHCAPVICFRCES*AVSLGK
Trigger: TTTGCCCAATGAGACAGCTCATGACTCACATCTGAA...GCAGATGACTGGAGCACAGTGTGGACTGCATCTCTTAAATACAATCCTTAATGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
3UTR-3UTR TCA 90 bp CCTTGGCAGGGTAACTCCAACTATCTCAAAATGCTCTATTTGACCGATAAATGCTTCAGATGTGAGTCATaGGCTGTCTCATTGGGCAAA +
Preference number: 2 (lower is better)
Translates to: PWQGNSNYLKMLYLTDKCFRCES*AVSLGK
Trigger: TTTGCCCAATGAGACAGCTCATGACTCACATCTGAA...GCATTTATCGGTCAAATAGAGCATTTTGAGATAGTTGGAGTTACCCTGCCAAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
3UTR-3UTR TCA 90 bp AACTGCATTTCAGGGTACATCTCATTAGAAAGGAGACATTCAATTTGCTTAGACGGTAGCTGTTCTCTGTaGTGTGTGCCTGAAGTTCCA +
Preference number: 2 (lower is better)
Translates to: NCISGYISLERRHSICLDGSCSL*CVPEVP
Trigger: TGGAACTTCAGGCACACATCACAGAGAACAGCTACC...GTCTAAGCAAATTGAATGTCTCCTTTCTAATGAGATGTACCCTGAAATGCAGTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
3UTR-3UTR GCA 90 bp GATGCAGTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCACCCTGTAGAGTTACATaGACAATTCTTAAAGAATCA +
Preference number: 2 (lower is better)
Translates to: DAVHTVLQSSAQTSAKVSPCRVT*TILKES
Trigger: TGATTCTTTAAGAATTGTGCATGTAACTCTACAGGG...TGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGACTGCATC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
3UTR-3UTR CCA 90 bp GATGCAGTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCAAAACTGAATTCTTTATaGACAGAAATTCTGACTCCC +
Preference number: 2 (lower is better)
Translates to: DAVHTVLQSSAQTSAKVSKLNSL*TEILTP
Trigger: GGGAGTCAGAATTTCTGTCCATAAAGAATTCAGTTT...TGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGACTGCATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
3UTR-3UTR GCA 90 bp CCTTGGCAGGGTAACTCCAACTATCTCAAAATGCTCTATTTGACCGATAAATGCGTAGCCATGTGTAAATaGTTCTCTCTTGTTTCACTG +
Preference number: 2 (lower is better)
Translates to: PWQGNSNYLKMLYLTDKCVAMCK*FSLVSL
Trigger: CAGTGAAACAAGAGAGAAGCATTTACACATGGCTAC...GCATTTATCGGTCAAATAGAGCATTTTGAGATAGTTGGAGTTACCCTGCCAAGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
3UTR-3UTR GCA 90 bp ACATTAAGGATTGTATTTAAGAGATGCAGTCCACACTGTGCTCCAGTCATCTGCGTAGCCATGTGTAAATaGTTCTCTCTTGTTTCACTG +
Preference number: 2 (lower is better)
Translates to: TLRIVFKRCSPHCAPVICVAMCK*FSLVSL
Trigger: CAGTGAAACAAGAGAGAAGCATTTACACATGGCTAC...GCAGATGACTGGAGCACAGTGTGGACTGCATCTCTTAAATACAATCCTTAATGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
3UTR-3UTR GCA 90 bp CCTTGGCAGGGTAACTCCAACTATCTCAAAATGCTCTATTTGACCGATAAATGCATTGTATTTAAGAGATaGAGTCCACACTGTGCTCCA +
Preference number: 2 (lower is better)
Translates to: PWQGNSNYLKMLYLTDKCIVFKR*SPHCAP
Trigger: TGGAGCACAGTGTGGACTGCATCTCTTAAATACAAT...GCATTTATCGGTCAAATAGAGCATTTTGAGATAGTTGGAGTTACCCTGCCAAGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
3UTR-3UTR TCA 90 bp ACATTAAGGATTGTATTTAAGAGATGCAGTCCACACTGTGCTCCAGTCATCTGCTGTGGAAGAATCATGTaGTCACAAAATGCCAAAGAT +
Preference number: 2 (lower is better)
Translates to: TLRIVFKRCSPHCAPVICCGRIM*SQNAKD
Trigger: ATCTTTGGCATTTTGTGATCACATGATTCTTCCACA...GCAGATGACTGGAGCACAGTGTGGACTGCATCTCTTAAATACAATCCTTAATGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
3UTR-3UTR GCA 90 bp GCTGTTCTCTGTGATGTGTGCCTGAAGTTCCAGCTAAGCAATTTTGTGGAAGAACCCTGTAGAGTTACATaGACAATTCTTAAAGAATCA +
Preference number: 2 (lower is better)
Translates to: AVLCDVCLKFQLSNFVEEPCRVT*TILKES
Trigger: TGATTCTTTAAGAATTGTGCATGTAACTCTACAGGG...TTCTTCCACAAAATTGCTTAGCTGGAACTTCAGGCACACATCACAGAGAACAGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
3UTR-3UTR CCA 90 bp AACTGCATTTCAGGGTACATCTCATTAGAAAGGAGACATTCAATTTGCTTAGACTCTCTCTTGTTTCACTaGATCAGAGCTAGTGGCTGT +
Preference number: 2 (lower is better)
Translates to: NCISGYISLERRHSICLDSLLFH*IRASGC
Trigger: ACAGCCACTAGCTCTGATCCAGTGAAACAAGAGAGA...GTCTAAGCAAATTGAATGTCTCCTTTCTAATGAGATGTACCCTGAAATGCAGTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
3UTR-3UTR GCA 90 bp CCTTGGCAGGGTAACTCCAACTATCTCAAAATGCTCTATTTGACCGATAAATGCCCCTGTAGAGTTACATaGACAATTCTTAAAGAATCA +
Preference number: 2 (lower is better)
Translates to: PWQGNSNYLKMLYLTDKCPCRVT*TILKES
Trigger: TGATTCTTTAAGAATTGTGCATGTAACTCTACAGGG...GCATTTATCGGTCAAATAGAGCATTTTGAGATAGTTGGAGTTACCCTGCCAAGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
3UTR-3UTR GCA 90 bp ACATTAAGGATTGTATTTAAGAGATGCAGTCCACACTGTGCTCCAGTCATCTGCCCCTGTAGAGTTACATaGACAATTCTTAAAGAATCA +
Preference number: 2 (lower is better)
Translates to: TLRIVFKRCSPHCAPVICPCRVT*TILKES
Trigger: TGATTCTTTAAGAATTGTGCATGTAACTCTACAGGG...GCAGATGACTGGAGCACAGTGTGGACTGCATCTCTTAAATACAATCCTTAATGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
3UTR-3UTR CCA 90 bp ATTAAGTCACCCTTGATTGCAATAATGATTATTCCCTGTAGAGTTACATGCACATCTCTCTTGTTTCACTaGATCAGAGCTAGTGGCTGT +
Preference number: 2 (lower is better)
Translates to: IKSPLIAIMIIPCRVTCTSLLFH*IRASGC
Trigger: ACAGCCACTAGCTCTGATCCAGTGAAACAAGAGAGA...TGTGCATGTAACTCTACAGGGAATAATCATTATTGCAATCAAGGGTGACTTAAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
3UTR-3UTR GCA 90 bp AACTGCATTTCAGGGTACATCTCATTAGAAAGGAGACATTCAATTTGCTTAGACGTAGCCATGTGTAAATaGTTCTCTCTTGTTTCACTG +
Preference number: 2 (lower is better)
Translates to: NCISGYISLERRHSICLDVAMCK*FSLVSL
Trigger: CAGTGAAACAAGAGAGAAGCATTTACACATGGCTAC...GTCTAAGCAAATTGAATGTCTCCTTTCTAATGAGATGTACCCTGAAATGCAGTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
3UTR-3UTR GCA 90 bp ATTATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAGTAGCCATGTGTAAATaGTTCTCTCTTGTTTCACTG +
Preference number: 2 (lower is better)
Translates to: IIPCRVTCTILKESLTNAVAMCK*FSLVSL
Trigger: CAGTGAAACAAGAGAGAAGCATTTACACATGGCTAC...TGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAATAAT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
3UTR-3UTR GCA 90 bp ATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAAGTAGCCATGTGTAAATaGTTCTCTCTTGTTTCACTG +
Preference number: 2 (lower is better)
Translates to: IPCRVTCTILKESLTNAKVAMCK*FSLVSL
Trigger: CAGTGAAACAAGAGAGAAGCATTTACACATGGCTAC...TTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
3UTR CAA 90 bp TCTAATCCTTGGCAGGGTAACTCCAACTATCTCAAAATGCTCTATTaGACCGATAAATGCAAAATCGATTTCACAGTATGGATTAGAATA +
Preference number: 2 (lower is better)
Translates to: SNPWQGNSNYLKMLY*TDKCKIDFTVWIRI
Trigger: TATTCTAATCCATACTGTGAAATCGATTTTGCATTTATCGGTCAAATAGAGCATTTTGAGATAGTTGGAGTTACCCTGCCAAGGATTAGA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
3UTR-3UTR TCA 90 bp AGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAAAGTAGCCATTGGCTGTGCTGCCTTTaGGAATATTTGATAAAAAGA +
Preference number: 2 (lower is better)
Translates to: RVTCTILKESLTNAKSSHWLCCL*EYLIKR
Trigger: TCTTTTTATCAAATATTCTCAAAGGCAGCACAGCCA...ATGGCTACTTTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
3UTR-3UTR TCA 90 bp ATTAAGTCACCCTTGATTGCAATAATGATTATTCCCTGTAGAGTTACATGCACATGGCTGTGCTGCCTTTaGGAATATTTGATAAAAAGA +
Preference number: 2 (lower is better)
Translates to: IKSPLIAIMIIPCRVTCTWLCCL*EYLIKR
Trigger: TCTTTTTATCAAATATTCTCAAAGGCAGCACAGCCA...TGTGCATGTAACTCTACAGGGAATAATCATTATTGCAATCAAGGGTGACTTAAT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
3UTR-3UTR TCA 90 bp CTAAGCAATTTTGTGGAAGAATCATGTGATCACAAAATGCCAAAGATGTCCATATGGCTGTGCTGCCTTTaGGAATATTTGATAAAAAGA +
Preference number: 2 (lower is better)
Translates to: LSNFVEESCDHKMPKMSIWLCCL*EYLIKR
Trigger: TCTTTTTATCAAATATTCTCAAAGGCAGCACAGCCA...TATGGACATCTTTGGCATTTTGTGATCACATGATTCTTCCACAAAATTGCTTAG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
3UTR-3UTR TCA 90 bp TTGCAAATCACAGGTGAAATATTTACATCGAATTCCAAATCACAGCTAATCCTGTTCTTAAAGAATCATTaGCCAACGCAAAAAGTAGCC +
Preference number: 2 (lower is better)
Translates to: LQITGEIFTSNSKSQLILFLKNH*PTQKVA
Trigger: GGCTACTTTTTGCGTTGGTCAATGATTCTTTAAGAA...CAGGATTAGCTGTGATTTGGAATTCGATGTAAATATTTCACCTGTGATTTGCAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
3UTR TCA 72 bp ACAGAGAGGGGCATAAGACTGGGTAGCTGTTCTCTGTaGTGTGTGCCTGAAGTTCCAGCTAAGCAATTTTGT +
Preference number: 3 (lower is better)
Translates to: TERGIRLGSCSL*CVPEVPAKQFC
Trigger: ACAAAATTGCTTAGCTGGAACTTCAGGCACACATCACAGAGAACAGCTACCCAGTCTTATGCCCCTCTCTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
3UTR TCA 72 bp CTCACCATTAAGTTGCCCAAACATATTTCAGCTGCTTaGCAGATATGCAGTGCTCTGTATTGTCTGGCTTAC +
Preference number: 3 (lower is better)
Translates to: LTIKLPKHISAA*QICSALYCLAY
Trigger: GTAAGCCAGACAATACAGAGCACTGCATATCTGTCAAGCAGCTGAAATATGTTTGGGCAACTTAATGGTGAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
3UTR GCA 72 bp AGAAAAATGAGGTTCTCCTGTCTTCACACAACCCTGTaGATGGATTTGTGGTCACGTACGCTTTCTTCTATT +
Preference number: 3 (lower is better)
Translates to: RKMRFSCLHTTL*MDLWSRTLSSI
Trigger: AATAGAAGAAAGCGTACGTGACCACAAATCCATGCACAGGGTTGTGTGAAGACAGGAGAACCTCATTTTTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
3UTR-3UTR CAA 90 bp ACATTAAGGATTGTATTTAAGAGATGCAGTCCACACTGTGCTCCAGTCATCTGCGTGGCTGTGCTGCCTTaGAGAATATTTGATAAAAAG +
Preference number: 3 (lower is better)
Translates to: TLRIVFKRCSPHCAPVICVAVLP*RIFDKK
Trigger: CTTTTTATCAAATATTCTCAAAGGCAGCACAGCCAC...GCAGATGACTGGAGCACAGTGTGGACTGCATCTCTTAAATACAATCCTTAATGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
3UTR GCA 72 bp CTGCTCAAACAAGCGCTAAAGTATCAAGTACCTAACTaGATTTCAGGGTACATCTCATTAGAAAGGAGACAT +
Preference number: 3 (lower is better)
Translates to: LLKQALKYQVPN*ISGYISLERRH
Trigger: ATGTCTCCTTTCTAATGAGATGTACCCTGAAATGCAGTTAGGTACTTGATACTTTAGCGCTTGTTTGAGCAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
3UTR TCA 72 bp GGCAGGGTAACTCCAACTATCTCAAAATGCTCTATTTaGCCGATAAATGCAAAATCGATTTCACAGTATGGA +
Preference number: 3 (lower is better)
Translates to: GRVTPTISKCSI*PINAKSISQYG
Trigger: TCCATACTGTGAAATCGATTTTGCATTTATCGGTCAAATAGAGCATTTTGAGATAGTTGGAGTTACCCTGCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
3UTR GCA 72 bp TTACAAATGGATGTTTTGTGTGGCTCACCATTAAGTTaGCCAAACATATTTCAGCTGCTTGACAGATATGCA +
Preference number: 3 (lower is better)
Translates to: LQMDVLCGSPLS*PNIFQLLDRYA
Trigger: TGCATATCTGTCAAGCAGCTGAAATATGTTTGGGCAACTTAATGGTGAGCCACACAAAACATCCATTTGTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
3UTR-3UTR CAA 90 bp AACTGCATTTCAGGGTACATCTCATTAGAAAGGAGACATTCAATTTGCTTAGACGTGGCTGTGCTGCCTTaGAGAATATTTGATAAAAAG +
Preference number: 3 (lower is better)
Translates to: NCISGYISLERRHSICLDVAVLP*RIFDKK
Trigger: CTTTTTATCAAATATTCTCAAAGGCAGCACAGCCAC...GTCTAAGCAAATTGAATGTCTCCTTTCTAATGAGATGTACCCTGAAATGCAGTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
3UTR-3UTR CAA 90 bp CTAAGCAATTTTGTGGAAGAATCATGTGATCACAAAATGCCAAAGATGTCCATAGTAAATGCTTCTCTCTaGTTTCACTGGATCAGAGCT +
Preference number: 3 (lower is better)
Translates to: LSNFVEESCDHKMPKMSIVNASL*FHWIRA
Trigger: AGCTCTGATCCAGTGAAACAAGAGAGAAGCATTTAC...TATGGACATCTTTGGCATTTTGTGATCACATGATTCTTCCACAAAATTGCTTAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
3UTR TCA 72 bp GAAGTTCCAGCTAAGCAATTTTGTGGAAGAATCATGTaGTCACAAAATGCCAAAGATGTCCATAAATCAAGG +
Preference number: 3 (lower is better)
Translates to: EVPAKQFCGRIM*SQNAKDVHKSR
Trigger: CCTTGATTTATGGACATCTTTGGCATTTTGTGATCACATGATTCTTCCACAAAATTGCTTAGCTGGAACTTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
3UTR-3UTR CAA 90 bp ATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAAGTGGCTGTGCTGCCTTaGAGAATATTTGATAAAAAG +
Preference number: 3 (lower is better)
Translates to: IPCRVTCTILKESLTNAKVAVLP*RIFDKK
Trigger: CTTTTTATCAAATATTCTCAAAGGCAGCACAGCCAC...TTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAAT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
3UTR-3UTR CAA 90 bp ATTATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAGTGGCTGTGCTGCCTTaGAGAATATTTGATAAAAAG +
Preference number: 3 (lower is better)
Translates to: IIPCRVTCTILKESLTNAVAVLP*RIFDKK
Trigger: CTTTTTATCAAATATTCTCAAAGGCAGCACAGCCAC...TGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAATAAT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
3UTR TCA 72 bp GATTTCACAGTATGGATTAGAATATTAAGAAGGAAGTaGCATCTACATTATTTACAGGGGGACATAATGGGG +
Preference number: 3 (lower is better)
Translates to: DFTVWIRILRRK*HLHYLQGDIMG
Trigger: CCCCATTATGTCCCCCTGTAAATAATGTAGATGTCACTTCCTTCTTAATATTCTAATCCATACTGTGAAATC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
3UTR TCA 72 bp TTCATGGCTACTTACTCATTTTCTGGGAGCAATTCTTaGTTGCTTCTTCAGACAACTAATAACATAGTGAGA +
Preference number: 3 (lower is better)
Translates to: FMATYSFSGSNS*LLLQTTNNIVR
Trigger: TCTCACTATGTTATTAGTTGTCTGAAGAAGCAATCAAGAATTGCTCCCAGAAAATGAGTAAGTAGCCATGAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
CDS-3UTR CCA 90 bp GTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCAAGTACCCACCGGCAGCACTGGTaGGGACCTACTGGCCTGGCT +
Preference number: 4 (lower is better)
Translates to: VHTVLQSSAQTSAKVSSTHRQHW*GPTGLA
Trigger: AGCCAGGCCAGTAGGTCCCCACCAGTGCTGCCGGTG...GGTACTTGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp GTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCAAGTACCGTTCACCGGCAGCACTaGTGGGGACCTACTGGCCTG +
Preference number: 4 (lower is better)
Translates to: VHTVLQSSAQTSAKVSSTVHRQH*WGPTGL
Trigger: CAGGCCAGTAGGTCCCCACCAGTGCTGCCGGTGAAC...GGTACTTGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp GTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCAAGTACCGGGGACCTACTGGCCTaGCTGATGTTACTGCTGCGC +
Preference number: 4 (lower is better)
Translates to: VHTVLQSSAQTSAKVSSTGDLLA*LMLLLR
Trigger: GCGCAGCAGTAACATCAGCCAGGCCAGTAGGTCCCC...GGTACTTGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp GTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCAAGTACCGTCCATTGGGGAGCATaGGGGCTGAGGGTCCATCAA +
Preference number: 4 (lower is better)
Translates to: VHTVLQSSAQTSAKVSSTVHWGA*GLRVHQ
Trigger: TTGATGGACCCTCAGCCCTCATGCTCCCCAATGGAC...GGTACTTGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp GTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCAAGTACCCTGCGAAGATCCCTGTaGAGACCAGGTTCCCGACTG +
Preference number: 4 (lower is better)
Translates to: VHTVLQSSAQTSAKVSSTLRRSL*RPGSRL
Trigger: CAGTCGGGAACCTGGTCTTCACAGGGATCTTCGCAG...GGTACTTGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp GCTGTTCTCTGTGATGTGTGCCTGAAGTTCCAGCTAAGCAATTTTGTGGAAGAAGTACTCAGCAGCGGCTaGAGCGATCGCCTCGGCTTC +
Preference number: 4 (lower is better)
Translates to: AVLCDVCLKFQLSNFVEEVLSSG*SDRLGF
Trigger: GAAGCCGAGGCGATCGCTGCAGCCGCTGCTGAGTAC...TTCTTCCACAAAATTGCTTAGCTGGAACTTCAGGCACACATCACAGAGAACAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp GTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCAAGTACCGTCACAGTCAGGAGGTaGACTGTTGAGGATGGGGGC +
Preference number: 4 (lower is better)
Translates to: VHTVLQSSAQTSAKVSSTVTVRR*TVEDGG
Trigger: GCCCCCATCCTCAACAGTGCACCTCCTGACTGTGAC...GGTACTTGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp GATGCAGTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCAGAAGCTCTGAGGTCCTaGCGGAGGCAACATCGCCAT +
Preference number: 4 (lower is better)
Translates to: DAVHTVLQSSAQTSAKVSEALRS*RRQHRH
Trigger: ATGGCGATGTTGCCTCCGCCAGGACCTCAGAGCTTC...TGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGACTGCATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp GCTGTTCTCTGTGATGTGTGCCTGAAGTTCCAGCTAAGCAATTTTGTGGAAGAAGTTCACCGGCAGCACTaGTGGGGACCTACTGGCCTG +
Preference number: 4 (lower is better)
Translates to: AVLCDVCLKFQLSNFVEEVHRQH*WGPTGL
Trigger: CAGGCCAGTAGGTCCCCACCAGTGCTGCCGGTGAAC...TTCTTCCACAAAATTGCTTAGCTGGAACTTCAGGCACACATCACAGAGAACAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp GCTGTTCTCTGTGATGTGTGCCTGAAGTTCCAGCTAAGCAATTTTGTGGAAGAAAGGACCCACGAATGCTaGGTGGTGACTGGTTGGGGG +
Preference number: 4 (lower is better)
Translates to: AVLCDVCLKFQLSNFVEERTHEC*VVTGWG
Trigger: CCCCCAACCAGTCACCACTCAGCATTCGTGGGTCCT...TTCTTCCACAAAATTGCTTAGCTGGAACTTCAGGCACACATCACAGAGAACAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp GCTGTTCTCTGTGATGTGTGCCTGAAGTTCCAGCTAAGCAATTTTGTGGAAGAAACCTACTGGCCTGGCTaGTGTTACTGCTGCGCCGCT +
Preference number: 4 (lower is better)
Translates to: AVLCDVCLKFQLSNFVEETYWPG*CYCCAA
Trigger: AGCGGCGCAGCAGTAACATCAGCCAGGCCAGTAGGT...TTCTTCCACAAAATTGCTTAGCTGGAACTTCAGGCACACATCACAGAGAACAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp GATGCAGTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCAAATGGGGCCAAGGTCTaGGTAGCCAAGAGTGTTGGC +
Preference number: 4 (lower is better)
Translates to: DAVHTVLQSSAQTSAKVSNGAKV*VAKSVG
Trigger: GCCAACACTCTTGGCTACTCAGACCTTGGCCCCATT...TGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGACTGCATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp GTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCAAGTACCGATAGGCTCAGCTTCTaGCTCCTCTTCTCCTGGCAG +
Preference number: 4 (lower is better)
Translates to: VHTVLQSSAQTSAKVSSTDRLSF*LLFSWQ
Trigger: CTGCCAGGAGAAGAGGAGGCAGAAGCTGAGCCTATC...GGTACTTGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp GCTGTTCTCTGTGATGTGTGCCTGAAGTTCCAGCTAAGCAATTTTGTGGAAGAAGGGGACCTACTGGCCTaGCTGATGTTACTGCTGCGC +
Preference number: 4 (lower is better)
Translates to: AVLCDVCLKFQLSNFVEEGDLLA*LMLLLR
Trigger: GCGCAGCAGTAACATCAGCCAGGCCAGTAGGTCCCC...TTCTTCCACAAAATTGCTTAGCTGGAACTTCAGGCACACATCACAGAGAACAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp TTCACTGGATCAGAGCTAGTGGCTGTGCTGCCTTTGAGAATATTTGATAAAAAGCACCGGCAGCACTGGTaGGGACCTACTGGCCTGGCT +
Preference number: 4 (lower is better)
Translates to: FTGSELVAVLPLRIFDKKHRQHW*GPTGLA
Trigger: AGCCAGGCCAGTAGGTCCCCACCAGTGCTGCCGGTG...CTTTTTATCAAATATTCTCAAAGGCAGCACAGCCACTAGCTCTGATCCAGTGAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp ACATTAAGGATTGTATTTAAGAGATGCAGTCCACACTGTGCTCCAGTCATCTGCGTTCACCGGCAGCACTaGTGGGGACCTACTGGCCTG +
Preference number: 4 (lower is better)
Translates to: TLRIVFKRCSPHCAPVICVHRQH*WGPTGL
Trigger: CAGGCCAGTAGGTCCCCACCAGTGCTGCCGGTGAAC...GCAGATGACTGGAGCACAGTGTGGACTGCATCTCTTAAATACAATCCTTAATGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp GTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCAAGTACCTTCAGGACACTGCCCTaGATCTGTGCTGAAACCGCA +
Preference number: 4 (lower is better)
Translates to: VHTVLQSSAQTSAKVSSTFRTLP*ICAETA
Trigger: TGCGGTTTCAGCACAGATTCAGGGCAGTGTCCTGAA...GGTACTTGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp CCAACGCAAAAAGTAGCCATGTGTAAATGCTTCTCTCTTGTTTCACTGGATCAGACCTACTGGCCTGGCTaGTGTTACTGCTGCGCCGCT +
Preference number: 4 (lower is better)
Translates to: PTQKVAMCKCFSLVSLDQTYWPG*CYCCAA
Trigger: AGCGGCGCAGCAGTAACATCAGCCAGGCCAGTAGGT...CTGATCCAGTGAAACAAGAGAGAAGCATTTACACATGGCTACTTTTTGCGTTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp ACATTAAGGATTGTATTTAAGAGATGCAGTCCACACTGTGCTCCAGTCATCTGCGGGGAGCATGAGGGCTaGGGGTCCATCAACAAGCGA +
Preference number: 4 (lower is better)
Translates to: TLRIVFKRCSPHCAPVICGEHEG*GSINKR
Trigger: TCGCTTGTTGATGGACCCTCAGCCCTCATGCTCCCC...GCAGATGACTGGAGCACAGTGTGGACTGCATCTCTTAAATACAATCCTTAATGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp TTCACTGGATCAGAGCTAGTGGCTGTGCTGCCTTTGAGAATATTTGATAAAAAGGTACTCAGCAGCGGCTaGAGCGATCGCCTCGGCTTC +
Preference number: 4 (lower is better)
Translates to: FTGSELVAVLPLRIFDKKVLSSG*SDRLGF
Trigger: GAAGCCGAGGCGATCGCTGCAGCCGCTGCTGAGTAC...CTTTTTATCAAATATTCTCAAAGGCAGCACAGCCACTAGCTCTGATCCAGTGAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp GTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCAAGTACCTCTTCGATGTTGGCCTaGTTCTGTTCCTCGTACGCC +
Preference number: 4 (lower is better)
Translates to: VHTVLQSSAQTSAKVSSTSSMLA*FCSSYA
Trigger: GGCGTACGAGGAACAGAACCAGGCCAACATCGAAGA...GGTACTTGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp GCTGTTCTCTGTGATGTGTGCCTGAAGTTCCAGCTAAGCAATTTTGTGGAAGAAATGCTGAGTGGTGACTaGTTGGGGGTGGACAGCCTC +
Preference number: 4 (lower is better)
Translates to: AVLCDVCLKFQLSNFVEEMLSGD*LGVDSL
Trigger: GAGGCTGTCCACCCCCAACCAGTCACCACTCAGCAT...TTCTTCCACAAAATTGCTTAGCTGGAACTTCAGGCACACATCACAGAGAACAGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp CCAACGCAAAAAGTAGCCATGTGTAAATGCTTCTCTCTTGTTTCACTGGATCAGACGAATGCTGAGTGGTaGCTGGTTGGGGGTGGACAG +
Preference number: 4 (lower is better)
Translates to: PTQKVAMCKCFSLVSLDQTNAEW*LVGGGQ
Trigger: CTGTCCACCCCCAACCAGTCACCACTCAGCATTCGT...CTGATCCAGTGAAACAAGAGAGAAGCATTTACACATGGCTACTTTTTGCGTTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp ACATTAAGGATTGTATTTAAGAGATGCAGTCCACACTGTGCTCCAGTCATCTGCACGAATGCTGAGTGGTaGCTGGTTGGGGGTGGACAG +
Preference number: 4 (lower is better)
Translates to: TLRIVFKRCSPHCAPVICTNAEW*LVGGGQ
Trigger: CTGTCCACCCCCAACCAGTCACCACTCAGCATTCGT...GCAGATGACTGGAGCACAGTGTGGACTGCATCTCTTAAATACAATCCTTAATGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp TTCACTGGATCAGAGCTAGTGGCTGTGCTGCCTTTGAGAATATTTGATAAAAAGACCTACTGGCCTGGCTaGTGTTACTGCTGCGCCGCT +
Preference number: 4 (lower is better)
Translates to: FTGSELVAVLPLRIFDKKTYWPG*CYCCAA
Trigger: AGCGGCGCAGCAGTAACATCAGCCAGGCCAGTAGGT...CTTTTTATCAAATATTCTCAAAGGCAGCACAGCCACTAGCTCTGATCCAGTGAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp ACATTAAGGATTGTATTTAAGAGATGCAGTCCACACTGTGCTCCAGTCATCTGCGTCCATTGGGGAGCATaGGGGCTGAGGGTCCATCAA +
Preference number: 4 (lower is better)
Translates to: TLRIVFKRCSPHCAPVICVHWGA*GLRVHQ
Trigger: TTGATGGACCCTCAGCCCTCATGCTCCCCAATGGAC...GCAGATGACTGGAGCACAGTGTGGACTGCATCTCTTAAATACAATCCTTAATGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp ACATTAAGGATTGTATTTAAGAGATGCAGTCCACACTGTGCTCCAGTCATCTGCCTGCGAAGATCCCTGTaGAGACCAGGTTCCCGACTG +
Preference number: 4 (lower is better)
Translates to: TLRIVFKRCSPHCAPVICLRRSL*RPGSRL
Trigger: CAGTCGGGAACCTGGTCTTCACAGGGATCTTCGCAG...GCAGATGACTGGAGCACAGTGTGGACTGCATCTCTTAAATACAATCCTTAATGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp CCAACGCAAAAAGTAGCCATGTGTAAATGCTTCTCTCTTGTTTCACTGGATCAGCAGTCCACTGCACTGTaGATCTTCCCGTTCACCGGC +
Preference number: 4 (lower is better)
Translates to: PTQKVAMCKCFSLVSLDQQSTAL*IFPFTG
Trigger: GCCGGTGAACGGGAAGATGCACAGTGCAGTGGACTG...CTGATCCAGTGAAACAAGAGAGAAGCATTTACACATGGCTACTTTTTGCGTTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp GAGTTTGGCATAGACCTCCGTAAAAGAGTCTTATTAACACGAGTGAGTCACCTTCAGTCCACTGCACTGTaGATCTTCCCGTTCACCGGC +
Preference number: 4 (lower is better)
Translates to: EFGIDLRKRVLLTRVSHLQSTAL*IFPFTG
Trigger: GCCGGTGAACGGGAAGATGCACAGTGCAGTGGACTG...AAGGTGACTCACTCGTGTTAATAAGACTCTTTTACGGAGGTCTATGCCAAACTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp GATGCAGTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCACTGTGTTGGTTAGAATaGTTGCTCTGCTCATGGCCC +
Preference number: 4 (lower is better)
Translates to: DAVHTVLQSSAQTSAKVSLCWLE*LLCSWP
Trigger: GGGCCATGAGCAGAGCAAGCATTCTAACCAACACAG...TGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGACTGCATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp GCTGTTCTCTGTGATGTGTGCCTGAAGTTCCAGCTAAGCAATTTTGTGGAAGAAGATAGGCTCAGCTTCTaGCTCCTCTTCTCCTGGCAG +
Preference number: 4 (lower is better)
Translates to: AVLCDVCLKFQLSNFVEEDRLSF*LLFSWQ
Trigger: CTGCCAGGAGAAGAGGAGGCAGAAGCTGAGCCTATC...TTCTTCCACAAAATTGCTTAGCTGGAACTTCAGGCACACATCACAGAGAACAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp GAGTTTGGCATAGACCTCCGTAAAAGAGTCTTATTAACACGAGTGAGTCACCTTGTCACAGTCAGGAGGTaGACTGTTGAGGATGGGGGC +
Preference number: 4 (lower is better)
Translates to: EFGIDLRKRVLLTRVSHLVTVRR*TVEDGG
Trigger: GCCCCCATCCTCAACAGTGCACCTCCTGACTGTGAC...AAGGTGACTCACTCGTGTTAATAAGACTCTTTTACGGAGGTCTATGCCAAACTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp GATGCAGTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCACTTCCAAGTCACTACTaGGCTTGGGACCTTCTTCCT +
Preference number: 4 (lower is better)
Translates to: DAVHTVLQSSAQTSAKVSLPSHY*AWDLLP
Trigger: AGGAAGAAGGTCCCAAGCCCAGTAGTGACTTGGAAG...TGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGACTGCATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp GTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCAAGTACCCTTCCAAGTCACTACTaGGCTTGGGACCTTCTTCCT +
Preference number: 4 (lower is better)
Translates to: VHTVLQSSAQTSAKVSSTLPSHY*AWDLLP
Trigger: AGGAAGAAGGTCCCAAGCCCAGTAGTGACTTGGAAG...GGTACTTGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp AACTGCATTTCAGGGTACATCTCATTAGAAAGGAGACATTCAATTTGCTTAGACCACCGGCAGCACTGGTaGGGACCTACTGGCCTGGCT +
Preference number: 4 (lower is better)
Translates to: NCISGYISLERRHSICLDHRQHW*GPTGLA
Trigger: AGCCAGGCCAGTAGGTCCCCACCAGTGCTGCCGGTG...GTCTAAGCAAATTGAATGTCTCCTTTCTAATGAGATGTACCCTGAAATGCAGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp GCTGTTCTCTGTGATGTGTGCCTGAAGTTCCAGCTAAGCAATTTTGTGGAAGAATTCAGGACACTGCCCTaGATCTGTGCTGAAACCGCA +
Preference number: 4 (lower is better)
Translates to: AVLCDVCLKFQLSNFVEEFRTLP*ICAETA
Trigger: TGCGGTTTCAGCACAGATTCAGGGCAGTGTCCTGAA...TTCTTCCACAAAATTGCTTAGCTGGAACTTCAGGCACACATCACAGAGAACAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp ACATTAAGGATTGTATTTAAGAGATGCAGTCCACACTGTGCTCCAGTCATCTGCCAGCCTGGAGGTTTCTaGAGAGCTCTCAGAGAGTCC +
Preference number: 4 (lower is better)
Translates to: TLRIVFKRCSPHCAPVICQPGGF*RALRES
Trigger: GGACTCTCTGAGAGCTCTTCAGAAACCTCCAGGCTG...GCAGATGACTGGAGCACAGTGTGGACTGCATCTCTTAAATACAATCCTTAATGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp GAGTTTGGCATAGACCTCCGTAAAAGAGTCTTATTAACACGAGTGAGTCACCTTCTCCTTGGCACTCTTTaGGCTCAGCCTGGAGGTTTC +
Preference number: 4 (lower is better)
Translates to: EFGIDLRKRVLLTRVSHLLLGTL*AQPGGF
Trigger: GAAACCTCCAGGCTGAGCTCAAAGAGTGCCAAGGAG...AAGGTGACTCACTCGTGTTAATAAGACTCTTTTACGGAGGTCTATGCCAAACTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp TTCACTGGATCAGAGCTAGTGGCTGTGCTGCCTTTGAGAATATTTGATAAAAAGGTCCATTGGGGAGCATaGGGGCTGAGGGTCCATCAA +
Preference number: 4 (lower is better)
Translates to: FTGSELVAVLPLRIFDKKVHWGA*GLRVHQ
Trigger: TTGATGGACCCTCAGCCCTCATGCTCCCCAATGGAC...CTTTTTATCAAATATTCTCAAAGGCAGCACAGCCACTAGCTCTGATCCAGTGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp TTCACTGGATCAGAGCTAGTGGCTGTGCTGCCTTTGAGAATATTTGATAAAAAGCTGCGAAGATCCCTGTaGAGACCAGGTTCCCGACTG +
Preference number: 4 (lower is better)
Translates to: FTGSELVAVLPLRIFDKKLRRSL*RPGSRL
Trigger: CAGTCGGGAACCTGGTCTTCACAGGGATCTTCGCAG...CTTTTTATCAAATATTCTCAAAGGCAGCACAGCCACTAGCTCTGATCCAGTGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp GTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCAAGTACCGCTGTAGTCACTATCTaGGTCACTGCTAAGCTCTTC +
Preference number: 4 (lower is better)
Translates to: VHTVLQSSAQTSAKVSSTAVVTI*VTAKLF
Trigger: GAAGAGCTTAGCAGTGACTCAGATAGTGACTACAGC...GGTACTTGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp ACATTAAGGATTGTATTTAAGAGATGCAGTCCACACTGTGCTCCAGTCATCTGCAATGGGGCCAAGGTCTaGGTAGCCAAGAGTGTTGGC +
Preference number: 4 (lower is better)
Translates to: TLRIVFKRCSPHCAPVICNGAKV*VAKSVG
Trigger: GCCAACACTCTTGGCTACTCAGACCTTGGCCCCATT...GCAGATGACTGGAGCACAGTGTGGACTGCATCTCTTAAATACAATCCTTAATGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp GTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCAAGTACCTACCCTTCAGGACACTaGCCTGAATCTGTGCTGAAA +
Preference number: 4 (lower is better)
Translates to: VHTVLQSSAQTSAKVSSTYPSGH*PESVLK
Trigger: TTTCAGCACAGATTCAGGGCAGTGTCCTGAAGGGTA...GGTACTTGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp GCTGTTCTCTGTGATGTGTGCCTGAAGTTCCAGCTAAGCAATTTTGTGGAAGAAGACTTGTTCTGCTGCTaGGCCTGGCAGAAAACAAGG +
Preference number: 4 (lower is better)
Translates to: AVLCDVCLKFQLSNFVEEDLFCC*AWQKTR
Trigger: CCTTGTTTTCTGCCAGGCGCAGCAGCAGAACAAGTC...TTCTTCCACAAAATTGCTTAGCTGGAACTTCAGGCACACATCACAGAGAACAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp TTCACTGGATCAGAGCTAGTGGCTGTGCTGCCTTTGAGAATATTTGATAAAAAGGAAGCTCTGAGGTCCTaGCGGAGGCAACATCGCCAT +
Preference number: 4 (lower is better)
Translates to: FTGSELVAVLPLRIFDKKEALRS*RRQHRH
Trigger: ATGGCGATGTTGCCTCCGCCAGGACCTCAGAGCTTC...CTTTTTATCAAATATTCTCAAAGGCAGCACAGCCACTAGCTCTGATCCAGTGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp GATGCAGTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCAAGTCACTACTGGGCTTaGGACCTTCTTCCTCATCAT +
Preference number: 4 (lower is better)
Translates to: DAVHTVLQSSAQTSAKVSSHYWA*DLLPHH
Trigger: ATGATGAGGAAGAAGGTCCCAAGCCCAGTAGTGACT...TGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGACTGCATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp GTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCAAGTACCTCTTTGAGCTCAGCCTaGAGGTTTCTGAAGAGCTCT +
Preference number: 4 (lower is better)
Translates to: VHTVLQSSAQTSAKVSSTSLSSA*RFLKSS
Trigger: AGAGCTCTTCAGAAACCTCCAGGCTGAGCTCAAAGA...GGTACTTGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp TTCACTGGATCAGAGCTAGTGGCTGTGCTGCCTTTGAGAATATTTGATAAAAAGATGCTGAGTGGTGACTaGTTGGGGGTGGACAGCCTC +
Preference number: 4 (lower is better)
Translates to: FTGSELVAVLPLRIFDKKMLSGD*LGVDSL
Trigger: GAGGCTGTCCACCCCCAACCAGTCACCACTCAGCAT...CTTTTTATCAAATATTCTCAAAGGCAGCACAGCCACTAGCTCTGATCCAGTGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp CCAACGCAAAAAGTAGCCATGTGTAAATGCTTCTCTCTTGTTTCACTGGATCAGTTCTGCTGCTGCGCCTaGCAGAAAACAAGGACCCAC +
Preference number: 4 (lower is better)
Translates to: PTQKVAMCKCFSLVSLDQFCCCA*QKTRTH
Trigger: GTGGGTCCTTGTTTTCTGCCAGGCGCAGCAGCAGAA...CTGATCCAGTGAAACAAGAGAGAAGCATTTACACATGGCTACTTTTTGCGTTGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp GAGTTTGGCATAGACCTCCGTAAAAGAGTCTTATTAACACGAGTGAGTCACCTTTTCTGCTGCTGCGCCTaGCAGAAAACAAGGACCCAC +
Preference number: 4 (lower is better)
Translates to: EFGIDLRKRVLLTRVSHLFCCCA*QKTRTH
Trigger: GTGGGTCCTTGTTTTCTGCCAGGCGCAGCAGCAGAA...AAGGTGACTCACTCGTGTTAATAAGACTCTTTTACGGAGGTCTATGCCAAACTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp ATTATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCACACCGGCAGCACTGGTaGGGACCTACTGGCCTGGCT +
Preference number: 4 (lower is better)
Translates to: IIPCRVTCTILKESLTNAHRQHW*GPTGLA
Trigger: AGCCAGGCCAGTAGGTCCCCACCAGTGCTGCCGGTG...TGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAATAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp ATTAAGTCACCCTTGATTGCAATAATGATTATTCCCTGTAGAGTTACATGCACACACCGGCAGCACTGGTaGGGACCTACTGGCCTGGCT +
Preference number: 4 (lower is better)
Translates to: IKSPLIAIMIIPCRVTCTHRQHW*GPTGLA
Trigger: AGCCAGGCCAGTAGGTCCCCACCAGTGCTGCCGGTG...TGTGCATGTAACTCTACAGGGAATAATCATTATTGCAATCAAGGGTGACTTAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp CCAACGCAAAAAGTAGCCATGTGTAAATGCTTCTCTCTTGTTTCACTGGATCAGCTGGCCACTGCAATCTaGAGGTTGTTTGCGTCGGTG +
Preference number: 4 (lower is better)
Translates to: PTQKVAMCKCFSLVSLDQLATAI*RLFASV
Trigger: CACCGACGCAAACAACCTCCAGATTGCAGTGGCCAG...CTGATCCAGTGAAACAAGAGAGAAGCATTTACACATGGCTACTTTTTGCGTTGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp GATGCAGTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCACCCTGGCCTCGGAATTaGTTTTTGTGGTTTCTTGGA +
Preference number: 4 (lower is better)
Translates to: DAVHTVLQSSAQTSAKVSPWPRN*FLWFLG
Trigger: TCCAAGAAACCACAAAAACCAATTCCGAGGCCAGGG...TGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGACTGCATC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp GTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCAAGTACCACTGTCATAGGAAGGTaGAGAGATGGTAGAGGCTGT +
Preference number: 4 (lower is better)
Translates to: VHTVLQSSAQTSAKVSSTTVIGR*RDGRGC
Trigger: ACAGCCTCTACCATCTCTCCACCTTCCTATGACAGT...GGTACTTGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp GATGCAGTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCAATTAGTTGTGCCCTCTaGAAGAAGCTGTCCATTGGG +
Preference number: 4 (lower is better)
Translates to: DAVHTVLQSSAQTSAKVSISCAL*KKLSIG
Trigger: CCCAATGGACAGCTTCTTCCAGAGGGCACAACTAAT...TGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGACTGCATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100063.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp CCAACGCAAAAAGTAGCCATGTGTAAATGCTTCTCTCTTGTTTCACTGGATCAGAAGCAGGGGTGGCGTTaGAACGGAAGATTGCTTTCC +
Preference number: 4 (lower is better)
Translates to: PTQKVAMCKCFSLVSLDQKQGWR*NGRLLS
Trigger: GGAAAGCAATCTTCCGTTTCAACGCCACCCCTGCTT...CTGATCCAGTGAAACAAGAGAGAAGCATTTACACATGGCTACTTTTTGCGTTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp GAGTTTGGCATAGACCTCCGTAAAAGAGTCTTATTAACACGAGTGAGTCACCTTAAGCAGGGGTGGCGTTaGAACGGAAGATTGCTTTCC +
Preference number: 4 (lower is better)
Translates to: EFGIDLRKRVLLTRVSHLKQGWR*NGRLLS
Trigger: GGAAAGCAATCTTCCGTTTCAACGCCACCCCTGCTT...AAGGTGACTCACTCGTGTTAATAAGACTCTTTTACGGAGGTCTATGCCAAACTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp GAGTTTGGCATAGACCTCCGTAAAAGAGTCTTATTAACACGAGTGAGTCACCTTTTCAGGACACTGCCCTaGATCTGTGCTGAAACCGCA +
Preference number: 4 (lower is better)
Translates to: EFGIDLRKRVLLTRVSHLFRTLP*ICAETA
Trigger: TGCGGTTTCAGCACAGATTCAGGGCAGTGTCCTGAA...AAGGTGACTCACTCGTGTTAATAAGACTCTTTTACGGAGGTCTATGCCAAACTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp TTCACTGGATCAGAGCTAGTGGCTGTGCTGCCTTTGAGAATATTTGATAAAAAGCAGCCTGGAGGTTTCTaGAGAGCTCTCAGAGAGTCC +
Preference number: 4 (lower is better)
Translates to: FTGSELVAVLPLRIFDKKQPGGF*RALRES
Trigger: GGACTCTCTGAGAGCTCTTCAGAAACCTCCAGGCTG...CTTTTTATCAAATATTCTCAAAGGCAGCACAGCCACTAGCTCTGATCCAGTGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp GATGCAGTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCAAAATCATGTAGGTTTTaGCAGCAGCACGCAGTGTCT +
Preference number: 4 (lower is better)
Translates to: DAVHTVLQSSAQTSAKVSKSCRF*QQHAVS
Trigger: AGACACTGCGTGCTGCTGGCAAAACCTACATGATTT...TGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGACTGCATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp ATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAAGTACTCAGCAGCGGCTaGAGCGATCGCCTCGGCTTC +
Preference number: 4 (lower is better)
Translates to: IPCRVTCTILKESLTNAKVLSSG*SDRLGF
Trigger: GAAGCCGAGGCGATCGCTGCAGCCGCTGCTGAGTAC...TTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp CTAAGCAATTTTGTGGAAGAATCATGTGATCACAAAATGCCAAAGATGTCCATAGTACTCAGCAGCGGCTaGAGCGATCGCCTCGGCTTC +
Preference number: 4 (lower is better)
Translates to: LSNFVEESCDHKMPKMSIVLSSG*SDRLGF
Trigger: GAAGCCGAGGCGATCGCTGCAGCCGCTGCTGAGTAC...TATGGACATCTTTGGCATTTTGTGATCACATGATTCTTCCACAAAATTGCTTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp GATGCAGTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCAAGCTTTTCTTTCGGATaGTTTCCTCTGACCCTGACT +
Preference number: 4 (lower is better)
Translates to: DAVHTVLQSSAQTSAKVSSFSFG*FPLTLT
Trigger: AGTCAGGGTCAGAGGAAAGCATCCGAAAGAAAAGCT...TGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGACTGCATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp CCAACGCAAAAAGTAGCCATGTGTAAATGCTTCTCTCTTGTTTCACTGGATCAGGACTTGTTCTGCTGCTaGGCCTGGCAGAAAACAAGG +
Preference number: 4 (lower is better)
Translates to: PTQKVAMCKCFSLVSLDQDLFCC*AWQKTR
Trigger: CCTTGTTTTCTGCCAGGCGCAGCAGCAGAACAAGTC...CTGATCCAGTGAAACAAGAGAGAAGCATTTACACATGGCTACTTTTTGCGTTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp GAGTTTGGCATAGACCTCCGTAAAAGAGTCTTATTAACACGAGTGAGTCACCTTGACTTGTTCTGCTGCTaGGCCTGGCAGAAAACAAGG +
Preference number: 4 (lower is better)
Translates to: EFGIDLRKRVLLTRVSHLDLFCC*AWQKTR
Trigger: CCTTGTTTTCTGCCAGGCGCAGCAGCAGAACAAGTC...AAGGTGACTCACTCGTGTTAATAAGACTCTTTTACGGAGGTCTATGCCAAACTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp GTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCAAGTACCGAGGGTTATCAACTGTaGTGCACTCTGAAGAACTTG +
Preference number: 4 (lower is better)
Translates to: VHTVLQSSAQTSAKVSSTEGYQL*CTLKNL
Trigger: CAAGTTCTTCAGAGTGCAGCACAGTTGATAACCCTC...GGTACTTGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp GTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCAAGTACCTGTACTCTACGTTTTTaGTCCAATCTGGAGGGTTGC +
Preference number: 4 (lower is better)
Translates to: VHTVLQSSAQTSAKVSSTCTLRF*SNLEGC
Trigger: GCAACCCTCCAGATTGGACCAAAAACGTAGAGTACA...GGTACTTGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp CCTTGGCAGGGTAACTCCAACTATCTCAAAATGCTCTATTTGACCGATAAATGCTCTTCGATGTTGGCCTaGTTCTGTTCCTCGTACGCC +
Preference number: 4 (lower is better)
Translates to: PWQGNSNYLKMLYLTDKCSSMLA*FCSSYA
Trigger: GGCGTACGAGGAACAGAACCAGGCCAACATCGAAGA...GCATTTATCGGTCAAATAGAGCATTTTGAGATAGTTGGAGTTACCCTGCCAAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
CDS-3UTR CCA 90 bp GAGTTTGGCATAGACCTCCGTAAAAGAGTCTTATTAACACGAGTGAGTCACCTTTCTTCGATGTTGGCCTaGTTCTGTTCCTCGTACGCC +
Preference number: 4 (lower is better)
Translates to: EFGIDLRKRVLLTRVSHLSSMLA*FCSSYA
Trigger: GGCGTACGAGGAACAGAACCAGGCCAACATCGAAGA...AAGGTGACTCACTCGTGTTAATAAGACTCTTTTACGGAGGTCTATGCCAAACTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp GCTGTTCTCTGTGATGTGTGCCTGAAGTTCCAGCTAAGCAATTTTGTGGAAGAACCTCTGACCCTGACTTaGACAGCTTCTCATCATCAC +
Preference number: 4 (lower is better)
Translates to: AVLCDVCLKFQLSNFVEEPLTLT*TASHHH
Trigger: GTGATGATGAGAAGCTGTCCAAGTCAGGGTCAGAGG...TTCTTCCACAAAATTGCTTAGCTGGAACTTCAGGCACACATCACAGAGAACAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp TTCACTGGATCAGAGCTAGTGGCTGTGCTGCCTTTGAGAATATTTGATAAAAAGTTCTGCTGCTGCGCCTaGCAGAAAACAAGGACCCAC +
Preference number: 4 (lower is better)
Translates to: FTGSELVAVLPLRIFDKKFCCCA*QKTRTH
Trigger: GTGGGTCCTTGTTTTCTGCCAGGCGCAGCAGCAGAA...CTTTTTATCAAATATTCTCAAAGGCAGCACAGCCACTAGCTCTGATCCAGTGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp ATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAAGTTCACCGGCAGCACTaGTGGGGACCTACTGGCCTG +
Preference number: 4 (lower is better)
Translates to: IPCRVTCTILKESLTNAKVHRQH*WGPTGL
Trigger: CAGGCCAGTAGGTCCCCACCAGTGCTGCCGGTGAAC...TTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp ATTATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAGTTCACCGGCAGCACTaGTGGGGACCTACTGGCCTG +
Preference number: 4 (lower is better)
Translates to: IIPCRVTCTILKESLTNAVHRQH*WGPTGL
Trigger: CAGGCCAGTAGGTCCCCACCAGTGCTGCCGGTGAAC...TGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAATAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp GCTGTTCTCTGTGATGTGTGCCTGAAGTTCCAGCTAAGCAATTTTGTGGAAGAACCTTTGCCTGAGATGTaGGTCATTCAGCATGTCCTC +
Preference number: 4 (lower is better)
Translates to: AVLCDVCLKFQLSNFVEEPLPEM*VIQHVL
Trigger: GAGGACATGCTGAATGACCCACATCTCAGGCAAAGG...TTCTTCCACAAAATTGCTTAGCTGGAACTTCAGGCACACATCACAGAGAACAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp GCTGTTCTCTGTGATGTGTGCCTGAAGTTCCAGCTAAGCAATTTTGTGGAAGAATGCCTCCTCTTCTCCTaGCAGAGGGTTATCAACTGT +
Preference number: 4 (lower is better)
Translates to: AVLCDVCLKFQLSNFVEECLLFS*QRVINC
Trigger: ACAGTTGATAACCCTCTGCCAGGAGAAGAGGAGGCA...TTCTTCCACAAAATTGCTTAGCTGGAACTTCAGGCACACATCACAGAGAACAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp CCAACGCAAAAAGTAGCCATGTGTAAATGCTTCTCTCTTGTTTCACTGGATCAGGCCCTGAATCTGTGCTaGAACCGCAAAGAAGAGCAT +
Preference number: 4 (lower is better)
Translates to: PTQKVAMCKCFSLVSLDQALNLC*NRKEEH
Trigger: ATGCTCTTCTTTGCGGTTTCAGCACAGATTCAGGGC...CTGATCCAGTGAAACAAGAGAGAAGCATTTACACATGGCTACTTTTTGCGTTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp GAGTTTGGCATAGACCTCCGTAAAAGAGTCTTATTAACACGAGTGAGTCACCTTGCCCTGAATCTGTGCTaGAACCGCAAAGAAGAGCAT +
Preference number: 4 (lower is better)
Translates to: EFGIDLRKRVLLTRVSHLALNLC*NRKEEH
Trigger: ATGCTCTTCTTTGCGGTTTCAGCACAGATTCAGGGC...AAGGTGACTCACTCGTGTTAATAAGACTCTTTTACGGAGGTCTATGCCAAACTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp ATTATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAGGACCCACGAATGCTaGGTGGTGACTGGTTGGGGG +
Preference number: 4 (lower is better)
Translates to: IIPCRVTCTILKESLTNARTHEC*VVTGWG
Trigger: CCCCCAACCAGTCACCACTCAGCATTCGTGGGTCCT...TGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAATAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp CTAAGCAATTTTGTGGAAGAATCATGTGATCACAAAATGCCAAAGATGTCCATAAGGACCCACGAATGCTaGGTGGTGACTGGTTGGGGG +
Preference number: 4 (lower is better)
Translates to: LSNFVEESCDHKMPKMSIRTHEC*VVTGWG
Trigger: CCCCCAACCAGTCACCACTCAGCATTCGTGGGTCCT...TATGGACATCTTTGGCATTTTGTGATCACATGATTCTTCCACAAAATTGCTTAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp ATTAAGTCACCCTTGATTGCAATAATGATTATTCCCTGTAGAGTTACATGCACAAGGACCCACGAATGCTaGGTGGTGACTGGTTGGGGG +
Preference number: 4 (lower is better)
Translates to: IKSPLIAIMIIPCRVTCTRTHEC*VVTGWG
Trigger: CCCCCAACCAGTCACCACTCAGCATTCGTGGGTCCT...TGTGCATGTAACTCTACAGGGAATAATCATTATTGCAATCAAGGGTGACTTAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp ATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAAACCTACTGGCCTGGCTaGTGTTACTGCTGCGCCGCT +
Preference number: 4 (lower is better)
Translates to: IPCRVTCTILKESLTNAKTYWPG*CYCCAA
Trigger: AGCGGCGCAGCAGTAACATCAGCCAGGCCAGTAGGT...TTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp CTAAGCAATTTTGTGGAAGAATCATGTGATCACAAAATGCCAAAGATGTCCATAACCTACTGGCCTGGCTaGTGTTACTGCTGCGCCGCT +
Preference number: 4 (lower is better)
Translates to: LSNFVEESCDHKMPKMSITYWPG*CYCCAA
Trigger: AGCGGCGCAGCAGTAACATCAGCCAGGCCAGTAGGT...TATGGACATCTTTGGCATTTTGTGATCACATGATTCTTCCACAAAATTGCTTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp AGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAAAGTAGCCATGGGGAGCATGAGGGCTaGGGGTCCATCAACAAGCGA +
Preference number: 4 (lower is better)
Translates to: RVTCTILKESLTNAKSSHGEHEG*GSINKR
Trigger: TCGCTTGTTGATGGACCCTCAGCCCTCATGCTCCCC...ATGGCTACTTTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp TTGCAAATCACAGGTGAAATATTTACATCGAATTCCAAATCACAGCTAATCCTGGGGGAGCATGAGGGCTaGGGGTCCATCAACAAGCGA +
Preference number: 4 (lower is better)
Translates to: LQITGEIFTSNSKSQLILGEHEG*GSINKR
Trigger: TCGCTTGTTGATGGACCCTCAGCCCTCATGCTCCCC...CAGGATTAGCTGTGATTTGGAATTCGATGTAAATATTTCACCTGTGATTTGCAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp ATTATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAGGGGAGCATGAGGGCTaGGGGTCCATCAACAAGCGA +
Preference number: 4 (lower is better)
Translates to: IIPCRVTCTILKESLTNAGEHEG*GSINKR
Trigger: TCGCTTGTTGATGGACCCTCAGCCCTCATGCTCCCC...TGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAATAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp CCAACGCAAAAAGTAGCCATGTGTAAATGCTTCTCTCTTGTTTCACTGGATCAGAGAGACTTGTTCTGCTaGTGCGCCTGGCAGAAAACA +
Preference number: 4 (lower is better)
Translates to: PTQKVAMCKCFSLVSLDQRDLFC*CAWQKT
Trigger: TGTTTTCTGCCAGGCGCAGCAGCAGAACAAGTCTCT...CTGATCCAGTGAAACAAGAGAGAAGCATTTACACATGGCTACTTTTTGCGTTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp GATGCAGTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCAATAGTGAACCCCTTCTaGTCTCGTTGTCTCCAAAAA +
Preference number: 4 (lower is better)
Translates to: DAVHTVLQSSAQTSAKVSIVNPF*SRCLQK
Trigger: TTTTTGGAGACAACGAGAGCAGAAGGGGTTCACTAT...TGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGACTGCATC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp CCAACGCAAAAAGTAGCCATGTGTAAATGCTTCTCTCTTGTTTCACTGGATCAGCTGTGTTGGTTAGAATaGTTGCTCTGCTCATGGCCC +
Preference number: 4 (lower is better)
Translates to: PTQKVAMCKCFSLVSLDQLCWLE*LLCSWP
Trigger: GGGCCATGAGCAGAGCAAGCATTCTAACCAACACAG...CTGATCCAGTGAAACAAGAGAGAAGCATTTACACATGGCTACTTTTTGCGTTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp GATGCAGTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCAGACCAGGTTCCCGACTaGAAGTACATTTTTGAATTC +
Preference number: 4 (lower is better)
Translates to: DAVHTVLQSSAQTSAKVSDQVPD*KYIFEF
Trigger: GAATTCAAAAATGTACTTGCAGTCGGGAACCTGGTC...TGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGACTGCATC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp GTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCAAGTACCGACCAGGTTCCCGACTaGAAGTACATTTTTGAATTC +
Preference number: 4 (lower is better)
Translates to: VHTVLQSSAQTSAKVSSTDQVPD*KYIFEF
Trigger: GAATTCAAAAATGTACTTGCAGTCGGGAACCTGGTC...GGTACTTGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp GATGCAGTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCAAATCTGGAGGTTGTTTaGGTCGGTGTCTTCTTCAAT +
Preference number: 4 (lower is better)
Translates to: DAVHTVLQSSAQTSAKVSNLEVV*VGVFFN
Trigger: ATTGAAGAAGACACCGACGCAAACAACCTCCAGATT...TGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGACTGCATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp GAGTTTGGCATAGACCTCCGTAAAAGAGTCTTATTAACACGAGTGAGTCACCTTGACTTTGTTTGGCTTTaGGATGAGGAGGGGAGGATC +
Preference number: 4 (lower is better)
Translates to: EFGIDLRKRVLLTRVSHLDFVWL*DEEGRI
Trigger: GATCCTCCCCTCCTCATCGCAAAGCCAAACAAAGTC...AAGGTGACTCACTCGTGTTAATAAGACTCTTTTACGGAGGTCTATGCCAAACTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp GAGTTTGGCATAGACCTCCGTAAAAGAGTCTTATTAACACGAGTGAGTCACCTTCTTCCAAGTCACTACTaGGCTTGGGACCTTCTTCCT +
Preference number: 4 (lower is better)
Translates to: EFGIDLRKRVLLTRVSHLLPSHY*AWDLLP
Trigger: AGGAAGAAGGTCCCAAGCCCAGTAGTGACTTGGAAG...AAGGTGACTCACTCGTGTTAATAAGACTCTTTTACGGAGGTCTATGCCAAACTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp ACATTAAGGATTGTATTTAAGAGATGCAGTCCACACTGTGCTCCAGTCATCTGCCTTCCAAGTCACTACTaGGCTTGGGACCTTCTTCCT +
Preference number: 4 (lower is better)
Translates to: TLRIVFKRCSPHCAPVICLPSHY*AWDLLP
Trigger: AGGAAGAAGGTCCCAAGCCCAGTAGTGACTTGGAAG...GCAGATGACTGGAGCACAGTGTGGACTGCATCTCTTAAATACAATCCTTAATGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp ACATTAAGGATTGTATTTAAGAGATGCAGTCCACACTGTGCTCCAGTCATCTGCCCTCTGACCCTGACTTaGACAGCTTCTCATCATCAC +
Preference number: 4 (lower is better)
Translates to: TLRIVFKRCSPHCAPVICPLTLT*TASHHH
Trigger: GTGATGATGAGAAGCTGTCCAAGTCAGGGTCAGAGG...GCAGATGACTGGAGCACAGTGTGGACTGCATCTCTTAAATACAATCCTTAATGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp GAGTTTGGCATAGACCTCCGTAAAAGAGTCTTATTAACACGAGTGAGTCACCTTCCTCTGACCCTGACTTaGACAGCTTCTCATCATCAC +
Preference number: 4 (lower is better)
Translates to: EFGIDLRKRVLLTRVSHLPLTLT*TASHHH
Trigger: GTGATGATGAGAAGCTGTCCAAGTCAGGGTCAGAGG...AAGGTGACTCACTCGTGTTAATAAGACTCTTTTACGGAGGTCTATGCCAAACTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp CCTTGGCAGGGTAACTCCAACTATCTCAAAATGCTCTATTTGACCGATAAATGCCCTTCCACGCCGAGATaGAAGCTTTTCTTTCGGATG +
Preference number: 4 (lower is better)
Translates to: PWQGNSNYLKMLYLTDKCPSTPR*KLFFRM
Trigger: CATCCGAAAGAAAAGCTTCCATCTCGGCGTGGAAGG...GCATTTATCGGTCAAATAGAGCATTTTGAGATAGTTGGAGTTACCCTGCCAAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
CDS-3UTR CCA 90 bp GAGTTTGGCATAGACCTCCGTAAAAGAGTCTTATTAACACGAGTGAGTCACCTTCCTTCCACGCCGAGATaGAAGCTTTTCTTTCGGATG +
Preference number: 4 (lower is better)
Translates to: EFGIDLRKRVLLTRVSHLPSTPR*KLFFRM
Trigger: CATCCGAAAGAAAAGCTTCCATCTCGGCGTGGAAGG...AAGGTGACTCACTCGTGTTAATAAGACTCTTTTACGGAGGTCTATGCCAAACTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp CTAAGCAATTTTGTGGAAGAATCATGTGATCACAAAATGCCAAAGATGTCCATAGGGGACCTACTGGCCTaGCTGATGTTACTGCTGCGC +
Preference number: 4 (lower is better)
Translates to: LSNFVEESCDHKMPKMSIGDLLA*LMLLLR
Trigger: GCGCAGCAGTAACATCAGCCAGGCCAGTAGGTCCCC...TATGGACATCTTTGGCATTTTGTGATCACATGATTCTTCCACAAAATTGCTTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp AGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAAAGTAGCCATGGGGACCTACTGGCCTaGCTGATGTTACTGCTGCGC +
Preference number: 4 (lower is better)
Translates to: RVTCTILKESLTNAKSSHGDLLA*LMLLLR
Trigger: GCGCAGCAGTAACATCAGCCAGGCCAGTAGGTCCCC...ATGGCTACTTTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp ATTATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAGGGGACCTACTGGCCTaGCTGATGTTACTGCTGCGC +
Preference number: 4 (lower is better)
Translates to: IIPCRVTCTILKESLTNAGDLLA*LMLLLR
Trigger: GCGCAGCAGTAACATCAGCCAGGCCAGTAGGTCCCC...TGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAATAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp GAGTTTGGCATAGACCTCCGTAAAAGAGTCTTATTAACACGAGTGAGTCACCTTCCTTTGCCTGAGATGTaGGTCATTCAGCATGTCCTC +
Preference number: 4 (lower is better)
Translates to: EFGIDLRKRVLLTRVSHLPLPEM*VIQHVL
Trigger: GAGGACATGCTGAATGACCCACATCTCAGGCAAAGG...AAGGTGACTCACTCGTGTTAATAAGACTCTTTTACGGAGGTCTATGCCAAACTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp CCAACGCAAAAAGTAGCCATGTGTAAATGCTTCTCTCTTGTTTCACTGGATCAGTGCCTCCTCTTCTCCTaGCAGAGGGTTATCAACTGT +
Preference number: 4 (lower is better)
Translates to: PTQKVAMCKCFSLVSLDQCLLFS*QRVINC
Trigger: ACAGTTGATAACCCTCTGCCAGGAGAAGAGGAGGCA...CTGATCCAGTGAAACAAGAGAGAAGCATTTACACATGGCTACTTTTTGCGTTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp GATGCAGTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCAGAGTCTATGTTAACTTaGCAGCATGGAAATCTCCTC +
Preference number: 4 (lower is better)
Translates to: DAVHTVLQSSAQTSAKVSESMLT*QHGNLL
Trigger: GAGGAGATTTCCATGCTGCCAAGTTAACATAGACTC...TGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGACTGCATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp GATGCAGTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCACGGTCTAACATCTGCTaGAATTCTAACTCTTTCTGT +
Preference number: 4 (lower is better)
Translates to: DAVHTVLQSSAQTSAKVSRSNIC*NSNSFC
Trigger: ACAGAAAGAGTTAGAATTTCAGCAGATGTTAGACCG...TGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGACTGCATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp ATTATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAACGAATGCTGAGTGGTaGCTGGTTGGGGGTGGACAG +
Preference number: 4 (lower is better)
Translates to: IIPCRVTCTILKESLTNATNAEW*LVGGGQ
Trigger: CTGTCCACCCCCAACCAGTCACCACTCAGCATTCGT...TGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAATAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp CTAAGCAATTTTGTGGAAGAATCATGTGATCACAAAATGCCAAAGATGTCCATAGTCCATTGGGGAGCATaGGGGCTGAGGGTCCATCAA +
Preference number: 4 (lower is better)
Translates to: LSNFVEESCDHKMPKMSIVHWGA*GLRVHQ
Trigger: TTGATGGACCCTCAGCCCTCATGCTCCCCAATGGAC...TATGGACATCTTTGGCATTTTGTGATCACATGATTCTTCCACAAAATTGCTTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp ATTAAGTCACCCTTGATTGCAATAATGATTATTCCCTGTAGAGTTACATGCACACTGCGAAGATCCCTGTaGAGACCAGGTTCCCGACTG +
Preference number: 4 (lower is better)
Translates to: IKSPLIAIMIIPCRVTCTLRRSL*RPGSRL
Trigger: CAGTCGGGAACCTGGTCTTCACAGGGATCTTCGCAG...TGTGCATGTAACTCTACAGGGAATAATCATTATTGCAATCAAGGGTGACTTAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp GAGTTTGGCATAGACCTCCGTAAAAGAGTCTTATTAACACGAGTGAGTCACCTTGCTGTAGTCACTATCTaGGTCACTGCTAAGCTCTTC +
Preference number: 4 (lower is better)
Translates to: EFGIDLRKRVLLTRVSHLAVVTI*VTAKLF
Trigger: GAAGAGCTTAGCAGTGACTCAGATAGTGACTACAGC...AAGGTGACTCACTCGTGTTAATAAGACTCTTTTACGGAGGTCTATGCCAAACTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp AACTGCATTTCAGGGTACATCTCATTAGAAAGGAGACATTCAATTTGCTTAGACAATGGGGCCAAGGTCTaGGTAGCCAAGAGTGTTGGC +
Preference number: 4 (lower is better)
Translates to: NCISGYISLERRHSICLDNGAKV*VAKSVG
Trigger: GCCAACACTCTTGGCTACTCAGACCTTGGCCCCATT...GTCTAAGCAAATTGAATGTCTCCTTTCTAATGAGATGTACCCTGAAATGCAGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp ACATTAAGGATTGTATTTAAGAGATGCAGTCCACACTGTGCTCCAGTCATCTGCTATCCATCCAGCCCTTaGACGTTGCAACTTGAAGCA +
Preference number: 4 (lower is better)
Translates to: TLRIVFKRCSPHCAPVICYPSSP*TLQLEA
Trigger: TGCTTCAAGTTGCAACGTTCAAGGGCTGGATGGATA...GCAGATGACTGGAGCACAGTGTGGACTGCATCTCTTAAATACAATCCTTAATGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp ACATTAAGGATTGTATTTAAGAGATGCAGTCCACACTGTGCTCCAGTCATCTGCTACCCTTCAGGACACTaGCCTGAATCTGTGCTGAAA +
Preference number: 4 (lower is better)
Translates to: TLRIVFKRCSPHCAPVICYPSGH*PESVLK
Trigger: TTTCAGCACAGATTCAGGGCAGTGTCCTGAAGGGTA...GCAGATGACTGGAGCACAGTGTGGACTGCATCTCTTAAATACAATCCTTAATGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp GCTGTTCTCTGTGATGTGTGCCTGAAGTTCCAGCTAAGCAATTTTGTGGAAGAAAGCTTTTCTTTCGGATaGTTTCCTCTGACCCTGACT +
Preference number: 4 (lower is better)
Translates to: AVLCDVCLKFQLSNFVEESFSFG*FPLTLT
Trigger: AGTCAGGGTCAGAGGAAAGCATCCGAAAGAAAAGCT...TTCTTCCACAAAATTGCTTAGCTGGAACTTCAGGCACACATCACAGAGAACAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp TTCACTGGATCAGAGCTAGTGGCTGTGCTGCCTTTGAGAATATTTGATAAAAAGAGAGACTTGTTCTGCTaGTGCGCCTGGCAGAAAACA +
Preference number: 4 (lower is better)
Translates to: FTGSELVAVLPLRIFDKKRDLFC*CAWQKT
Trigger: TGTTTTCTGCCAGGCGCAGCAGCAGAACAAGTCTCT...CTTTTTATCAAATATTCTCAAAGGCAGCACAGCCACTAGCTCTGATCCAGTGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp ATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAACAGTCCACTGCACTGTaGATCTTCCCGTTCACCGGC +
Preference number: 4 (lower is better)
Translates to: IPCRVTCTILKESLTNAKQSTAL*IFPFTG
Trigger: GCCGGTGAACGGGAAGATGCACAGTGCAGTGGACTG...TTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp CTAAGCAATTTTGTGGAAGAATCATGTGATCACAAAATGCCAAAGATGTCCATACAGTCCACTGCACTGTaGATCTTCCCGTTCACCGGC +
Preference number: 4 (lower is better)
Translates to: LSNFVEESCDHKMPKMSIQSTAL*IFPFTG
Trigger: GCCGGTGAACGGGAAGATGCACAGTGCAGTGGACTG...TATGGACATCTTTGGCATTTTGTGATCACATGATTCTTCCACAAAATTGCTTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp GCTGTTCTCTGTGATGTGTGCCTGAAGTTCCAGCTAAGCAATTTTGTGGAAGAAGAGGGTTATCAACTGTaGTGCACTCTGAAGAACTTG +
Preference number: 4 (lower is better)
Translates to: AVLCDVCLKFQLSNFVEEEGYQL*CTLKNL
Trigger: CAAGTTCTTCAGAGTGCAGCACAGTTGATAACCCTC...TTCTTCCACAAAATTGCTTAGCTGGAACTTCAGGCACACATCACAGAGAACAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp GAGTTTGGCATAGACCTCCGTAAAAGAGTCTTATTAACACGAGTGAGTCACCTTCATGATGGAAGGGATTaGTCCTATGAGTGCGTTGAC +
Preference number: 4 (lower is better)
Translates to: EFGIDLRKRVLLTRVSHLHDGRD*SYECVD
Trigger: GTCAACGCACTCATAGGAGCAATCCCTTCCATCATG...AAGGTGACTCACTCGTGTTAATAAGACTCTTTTACGGAGGTCTATGCCAAACTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp ATTAAGTCACCCTTGATTGCAATAATGATTATTCCCTGTAGAGTTACATGCACAGTCACAGTCAGGAGGTaGACTGTTGAGGATGGGGGC +
Preference number: 4 (lower is better)
Translates to: IKSPLIAIMIIPCRVTCTVTVRR*TVEDGG
Trigger: GCCCCCATCCTCAACAGTGCACCTCCTGACTGTGAC...TGTGCATGTAACTCTACAGGGAATAATCATTATTGCAATCAAGGGTGACTTAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp AGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAAAGTAGCCATGTCACAGTCAGGAGGTaGACTGTTGAGGATGGGGGC +
Preference number: 4 (lower is better)
Translates to: RVTCTILKESLTNAKSSHVTVRR*TVEDGG
Trigger: GCCCCCATCCTCAACAGTGCACCTCCTGACTGTGAC...ATGGCTACTTTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp TTGCAAATCACAGGTGAAATATTTACATCGAATTCCAAATCACAGCTAATCCTGGTCACAGTCAGGAGGTaGACTGTTGAGGATGGGGGC +
Preference number: 4 (lower is better)
Translates to: LQITGEIFTSNSKSQLILVTVRR*TVEDGG
Trigger: GCCCCCATCCTCAACAGTGCACCTCCTGACTGTGAC...CAGGATTAGCTGTGATTTGGAATTCGATGTAAATATTTCACCTGTGATTTGCAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp TTCACTGGATCAGAGCTAGTGGCTGTGCTGCCTTTGAGAATATTTGATAAAAAGGACTTTGTTTGGCTTTaGGATGAGGAGGGGAGGATC +
Preference number: 4 (lower is better)
Translates to: FTGSELVAVLPLRIFDKKDFVWL*DEEGRI
Trigger: GATCCTCCCCTCCTCATCGCAAAGCCAAACAAAGTC...CTTTTTATCAAATATTCTCAAAGGCAGCACAGCCACTAGCTCTGATCCAGTGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp ATTAAGTCACCCTTGATTGCAATAATGATTATTCCCTGTAGAGTTACATGCACAGAAGCTCTGAGGTCCTaGCGGAGGCAACATCGCCAT +
Preference number: 4 (lower is better)
Translates to: IKSPLIAIMIIPCRVTCTEALRS*RRQHRH
Trigger: ATGGCGATGTTGCCTCCGCCAGGACCTCAGAGCTTC...TGTGCATGTAACTCTACAGGGAATAATCATTATTGCAATCAAGGGTGACTTAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp ATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAAGAAGCTCTGAGGTCCTaGCGGAGGCAACATCGCCAT +
Preference number: 4 (lower is better)
Translates to: IPCRVTCTILKESLTNAKEALRS*RRQHRH
Trigger: ATGGCGATGTTGCCTCCGCCAGGACCTCAGAGCTTC...TTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp ATTATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAGAAGCTCTGAGGTCCTaGCGGAGGCAACATCGCCAT +
Preference number: 4 (lower is better)
Translates to: IIPCRVTCTILKESLTNAEALRS*RRQHRH
Trigger: ATGGCGATGTTGCCTCCGCCAGGACCTCAGAGCTTC...TGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAATAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp ACATTAAGGATTGTATTTAAGAGATGCAGTCCACACTGTGCTCCAGTCATCTGCAGTCACTACTGGGCTTaGGACCTTCTTCCTCATCAT +
Preference number: 4 (lower is better)
Translates to: TLRIVFKRCSPHCAPVICSHYWA*DLLPHH
Trigger: ATGATGAGGAAGAAGGTCCCAAGCCCAGTAGTGACT...GCAGATGACTGGAGCACAGTGTGGACTGCATCTCTTAAATACAATCCTTAATGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp CCAACGCAAAAAGTAGCCATGTGTAAATGCTTCTCTCTTGTTTCACTGGATCAGAGTCACTACTGGGCTTaGGACCTTCTTCCTCATCAT +
Preference number: 4 (lower is better)
Translates to: PTQKVAMCKCFSLVSLDQSHYWA*DLLPHH
Trigger: ATGATGAGGAAGAAGGTCCCAAGCCCAGTAGTGACT...CTGATCCAGTGAAACAAGAGAGAAGCATTTACACATGGCTACTTTTTGCGTTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp CCAACGCAAAAAGTAGCCATGTGTAAATGCTTCTCTCTTGTTTCACTGGATCAGTCTTTGAGCTCAGCCTaGAGGTTTCTGAAGAGCTCT +
Preference number: 4 (lower is better)
Translates to: PTQKVAMCKCFSLVSLDQSLSSA*RFLKSS
Trigger: AGAGCTCTTCAGAAACCTCCAGGCTGAGCTCAAAGA...CTGATCCAGTGAAACAAGAGAGAAGCATTTACACATGGCTACTTTTTGCGTTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp ACATTAAGGATTGTATTTAAGAGATGCAGTCCACACTGTGCTCCAGTCATCTGCTCTTTGAGCTCAGCCTaGAGGTTTCTGAAGAGCTCT +
Preference number: 4 (lower is better)
Translates to: TLRIVFKRCSPHCAPVICSLSSA*RFLKSS
Trigger: AGAGCTCTTCAGAAACCTCCAGGCTGAGCTCAAAGA...GCAGATGACTGGAGCACAGTGTGGACTGCATCTCTTAAATACAATCCTTAATGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp TTCACTGGATCAGAGCTAGTGGCTGTGCTGCCTTTGAGAATATTTGATAAAAAGCCTCTGACCCTGACTTaGACAGCTTCTCATCATCAC +
Preference number: 4 (lower is better)
Translates to: FTGSELVAVLPLRIFDKKPLTLT*TASHHH
Trigger: GTGATGATGAGAAGCTGTCCAAGTCAGGGTCAGAGG...CTTTTTATCAAATATTCTCAAAGGCAGCACAGCCACTAGCTCTGATCCAGTGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp ATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAAATGCTGAGTGGTGACTaGTTGGGGGTGGACAGCCTC +
Preference number: 4 (lower is better)
Translates to: IPCRVTCTILKESLTNAKMLSGD*LGVDSL
Trigger: GAGGCTGTCCACCCCCAACCAGTCACCACTCAGCAT...TTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp ATTAAGTCACCCTTGATTGCAATAATGATTATTCCCTGTAGAGTTACATGCACAATGCTGAGTGGTGACTaGTTGGGGGTGGACAGCCTC +
Preference number: 4 (lower is better)
Translates to: IKSPLIAIMIIPCRVTCTMLSGD*LGVDSL
Trigger: GAGGCTGTCCACCCCCAACCAGTCACCACTCAGCAT...TGTGCATGTAACTCTACAGGGAATAATCATTATTGCAATCAAGGGTGACTTAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp CCAACGCAAAAAGTAGCCATGTGTAAATGCTTCTCTCTTGTTTCACTGGATCAGGTTAACTTGGCAGCATaGAAATCTCCTCACACAGCC +
Preference number: 4 (lower is better)
Translates to: PTQKVAMCKCFSLVSLDQVNLAA*KSPHTA
Trigger: GGCTGTGTGAGGAGATTTCCATGCTGCCAAGTTAAC...CTGATCCAGTGAAACAAGAGAGAAGCATTTACACATGGCTACTTTTTGCGTTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp CCTTGGCAGGGTAACTCCAACTATCTCAAAATGCTCTATTTGACCGATAAATGCCCCTGGCCTCGGAATTaGTTTTTGTGGTTTCTTGGA +
Preference number: 4 (lower is better)
Translates to: PWQGNSNYLKMLYLTDKCPWPRN*FLWFLG
Trigger: TCCAAGAAACCACAAAAACCAATTCCGAGGCCAGGG...GCATTTATCGGTCAAATAGAGCATTTTGAGATAGTTGGAGTTACCCTGCCAAGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
CDS-3UTR CCA 90 bp GATGCAGTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCAGAAACATTCCTACAATaGAGAGGATCACTACCACAA +
Preference number: 4 (lower is better)
Translates to: DAVHTVLQSSAQTSAKVSETFLQ*RGSLPQ
Trigger: TTGTGGTAGTGATCCTCTCCATTGTAGGAATGTTTC...TGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGACTGCATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp ACATTAAGGATTGTATTTAAGAGATGCAGTCCACACTGTGCTCCAGTCATCTGCACTGTCATAGGAAGGTaGAGAGATGGTAGAGGCTGT +
Preference number: 4 (lower is better)
Translates to: TLRIVFKRCSPHCAPVICTVIGR*RDGRGC
Trigger: ACAGCCTCTACCATCTCTCCACCTTCCTATGACAGT...GCAGATGACTGGAGCACAGTGTGGACTGCATCTCTTAAATACAATCCTTAATGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp AACTGCATTTCAGGGTACATCTCATTAGAAAGGAGACATTCAATTTGCTTAGACAAGCAGGGGTGGCGTTaGAACGGAAGATTGCTTTCC +
Preference number: 4 (lower is better)
Translates to: NCISGYISLERRHSICLDKQGWR*NGRLLS
Trigger: GGAAAGCAATCTTCCGTTTCAACGCCACCCCTGCTT...GTCTAAGCAAATTGAATGTCTCCTTTCTAATGAGATGTACCCTGAAATGCAGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp AGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAAAGTAGCCATCAGCCTGGAGGTTTCTaGAGAGCTCTCAGAGAGTCC +
Preference number: 4 (lower is better)
Translates to: RVTCTILKESLTNAKSSHQPGGF*RALRES
Trigger: GGACTCTCTGAGAGCTCTTCAGAAACCTCCAGGCTG...ATGGCTACTTTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp ATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAACAGCCTGGAGGTTTCTaGAGAGCTCTCAGAGAGTCC +
Preference number: 4 (lower is better)
Translates to: IPCRVTCTILKESLTNAKQPGGF*RALRES
Trigger: GGACTCTCTGAGAGCTCTTCAGAAACCTCCAGGCTG...TTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp CTAAGCAATTTTGTGGAAGAATCATGTGATCACAAAATGCCAAAGATGTCCATACAGCCTGGAGGTTTCTaGAGAGCTCTCAGAGAGTCC +
Preference number: 4 (lower is better)
Translates to: LSNFVEESCDHKMPKMSIQPGGF*RALRES
Trigger: GGACTCTCTGAGAGCTCTTCAGAAACCTCCAGGCTG...TATGGACATCTTTGGCATTTTGTGATCACATGATTCTTCCACAAAATTGCTTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp CTAAGCAATTTTGTGGAAGAATCATGTGATCACAAAATGCCAAAGATGTCCATACTCCTTGGCACTCTTTaGGCTCAGCCTGGAGGTTTC +
Preference number: 4 (lower is better)
Translates to: LSNFVEESCDHKMPKMSILLGTL*AQPGGF
Trigger: GAAACCTCCAGGCTGAGCTCAAAGAGTGCCAAGGAG...TATGGACATCTTTGGCATTTTGTGATCACATGATTCTTCCACAAAATTGCTTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp ATTATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCACTCCTTGGCACTCTTTaGGCTCAGCCTGGAGGTTTC +
Preference number: 4 (lower is better)
Translates to: IIPCRVTCTILKESLTNALLGTL*AQPGGF
Trigger: GAAACCTCCAGGCTGAGCTCAAAGAGTGCCAAGGAG...TGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAATAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp TTCACTGGATCAGAGCTAGTGGCTGTGCTGCCTTTGAGAATATTTGATAAAAAGGCTGTAGTCACTATCTaGGTCACTGCTAAGCTCTTC +
Preference number: 4 (lower is better)
Translates to: FTGSELVAVLPLRIFDKKAVVTI*VTAKLF
Trigger: GAAGAGCTTAGCAGTGACTCAGATAGTGACTACAGC...CTTTTTATCAAATATTCTCAAAGGCAGCACAGCCACTAGCTCTGATCCAGTGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp ATTAAGTCACCCTTGATTGCAATAATGATTATTCCCTGTAGAGTTACATGCACAAATGGGGCCAAGGTCTaGGTAGCCAAGAGTGTTGGC +
Preference number: 4 (lower is better)
Translates to: IKSPLIAIMIIPCRVTCTNGAKV*VAKSVG
Trigger: GCCAACACTCTTGGCTACTCAGACCTTGGCCCCATT...TGTGCATGTAACTCTACAGGGAATAATCATTATTGCAATCAAGGGTGACTTAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp ATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAAAATGGGGCCAAGGTCTaGGTAGCCAAGAGTGTTGGC +
Preference number: 4 (lower is better)
Translates to: IPCRVTCTILKESLTNAKNGAKV*VAKSVG
Trigger: GCCAACACTCTTGGCTACTCAGACCTTGGCCCCATT...TTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAAT
43% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp TTCACTGGATCAGAGCTAGTGGCTGTGCTGCCTTTGAGAATATTTGATAAAAAGTATCCATCCAGCCCTTaGACGTTGCAACTTGAAGCA +
Preference number: 4 (lower is better)
Translates to: FTGSELVAVLPLRIFDKKYPSSP*TLQLEA
Trigger: TGCTTCAAGTTGCAACGTTCAAGGGCTGGATGGATA...CTTTTTATCAAATATTCTCAAAGGCAGCACAGCCACTAGCTCTGATCCAGTGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp GATGCAGTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCAGTTGAAACGGAAGATTaGTTTCCCTTTGTTCAATAC +
Preference number: 4 (lower is better)
Translates to: DAVHTVLQSSAQTSAKVSVETED*FPFVQY
Trigger: GTATTGAACAAAGGGAAAGCAATCTTCCGTTTCAAC...TGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGACTGCATC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp GATGCAGTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCATTCCGGAAACATTTATaGTTCAAGTTGCCCATAAAC +
Preference number: 4 (lower is better)
Translates to: DAVHTVLQSSAQTSAKVSFRKHL*FKLPIN
Trigger: GTTTATGGGCAACTTGAAGCATAAATGTTTCCGGAA...TGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGACTGCATC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp GAGTTTGGCATAGACCTCCGTAAAAGAGTCTTATTAACACGAGTGAGTCACCTTAAATCATGTAGGTTTTaGCAGCAGCACGCAGTGTCT +
Preference number: 4 (lower is better)
Translates to: EFGIDLRKRVLLTRVSHLKSCRF*QQHAVS
Trigger: AGACACTGCGTGCTGCTGGCAAAACCTACATGATTT...AAGGTGACTCACTCGTGTTAATAAGACTCTTTTACGGAGGTCTATGCCAAACTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp CCTTGGCAGGGTAACTCCAACTATCTCAAAATGCTCTATTTGACCGATAAATGCAAATCATGTAGGTTTTaGCAGCAGCACGCAGTGTCT +
Preference number: 4 (lower is better)
Translates to: PWQGNSNYLKMLYLTDKCKSCRF*QQHAVS
Trigger: AGACACTGCGTGCTGCTGGCAAAACCTACATGATTT...GCATTTATCGGTCAAATAGAGCATTTTGAGATAGTTGGAGTTACCCTGCCAAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
CDS-3UTR GCA 90 bp GCTGTTCTCTGTGATGTGTGCCTGAAGTTCCAGCTAAGCAATTTTGTGGAAGAAATAGTGAACCCCTTCTaGTCTCGTTGTCTCCAAAAA +
Preference number: 4 (lower is better)
Translates to: AVLCDVCLKFQLSNFVEEIVNPF*SRCLQK
Trigger: TTTTTGGAGACAACGAGAGCAGAAGGGGTTCACTAT...TTCTTCCACAAAATTGCTTAGCTGGAACTTCAGGCACACATCACAGAGAACAGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp GATGCAGTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCAGGTGTCTTCTTCAATTaGTGTAAGATTGTCAGAACT +
Preference number: 4 (lower is better)
Translates to: DAVHTVLQSSAQTSAKVSGVFFN*CKIVRT
Trigger: AGTTCTGACAATCTTACAGCAATTGAAGAAGACACC...TGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGACTGCATC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp ATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAAGATAGGCTCAGCTTCTaGCTCCTCTTCTCCTGGCAG +
Preference number: 4 (lower is better)
Translates to: IPCRVTCTILKESLTNAKDRLSF*LLFSWQ
Trigger: CTGCCAGGAGAAGAGGAGGCAGAAGCTGAGCCTATC...TTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp AGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAAAGTAGCCATGATAGGCTCAGCTTCTaGCTCCTCTTCTCCTGGCAG +
Preference number: 4 (lower is better)
Translates to: RVTCTILKESLTNAKSSHDRLSF*LLFSWQ
Trigger: CTGCCAGGAGAAGAGGAGGCAGAAGCTGAGCCTATC...ATGGCTACTTTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp TTGCAAATCACAGGTGAAATATTTACATCGAATTCCAAATCACAGCTAATCCTGGATAGGCTCAGCTTCTaGCTCCTCTTCTCCTGGCAG +
Preference number: 4 (lower is better)
Translates to: LQITGEIFTSNSKSQLILDRLSF*LLFSWQ
Trigger: CTGCCAGGAGAAGAGGAGGCAGAAGCTGAGCCTATC...CAGGATTAGCTGTGATTTGGAATTCGATGTAAATATTTCACCTGTGATTTGCAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp TTCACTGGATCAGAGCTAGTGGCTGTGCTGCCTTTGAGAATATTTGATAAAAAGCATGATGGAAGGGATTaGTCCTATGAGTGCGTTGAC +
Preference number: 4 (lower is better)
Translates to: FTGSELVAVLPLRIFDKKHDGRD*SYECVD
Trigger: GTCAACGCACTCATAGGAGCAATCCCTTCCATCATG...CTTTTTATCAAATATTCTCAAAGGCAGCACAGCCACTAGCTCTGATCCAGTGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp GTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCAAGTACCACACTCAGAACGGTTTaGAACTTGAGATACAGAAAA +
Preference number: 4 (lower is better)
Translates to: VHTVLQSSAQTSAKVSSTTLRTV*NLRYRK
Trigger: TTTTCTGTATCTCAAGTTGCAAACCGTTCTGAGTGT...GGTACTTGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp GATGCAGTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCAACACTCAGAACGGTTTaGAACTTGAGATACAGAAAA +
Preference number: 4 (lower is better)
Translates to: DAVHTVLQSSAQTSAKVSTLRTV*NLRYRK
Trigger: TTTTCTGTATCTCAAGTTGCAAACCGTTCTGAGTGT...TGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGACTGCATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp TTCACTGGATCAGAGCTAGTGGCTGTGCTGCCTTTGAGAATATTTGATAAAAAGTCTTTGAGCTCAGCCTaGAGGTTTCTGAAGAGCTCT +
Preference number: 4 (lower is better)
Translates to: FTGSELVAVLPLRIFDKKSLSSA*RFLKSS
Trigger: AGAGCTCTTCAGAAACCTCCAGGCTGAGCTCAAAGA...CTTTTTATCAAATATTCTCAAAGGCAGCACAGCCACTAGCTCTGATCCAGTGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp CTAAGCAATTTTGTGGAAGAATCATGTGATCACAAAATGCCAAAGATGTCCATATTCTGCTGCTGCGCCTaGCAGAAAACAAGGACCCAC +
Preference number: 4 (lower is better)
Translates to: LSNFVEESCDHKMPKMSIFCCCA*QKTRTH
Trigger: GTGGGTCCTTGTTTTCTGCCAGGCGCAGCAGCAGAA...TATGGACATCTTTGGCATTTTGTGATCACATGATTCTTCCACAAAATTGCTTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp ATTATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCATTCTGCTGCTGCGCCTaGCAGAAAACAAGGACCCAC +
Preference number: 4 (lower is better)
Translates to: IIPCRVTCTILKESLTNAFCCCA*QKTRTH
Trigger: GTGGGTCCTTGTTTTCTGCCAGGCGCAGCAGCAGAA...TGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAATAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp GATGCAGTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCAATTCATAGGGATCCATaGCTATTAACTTCAGTACCA +
Preference number: 4 (lower is better)
Translates to: DAVHTVLQSSAQTSAKVSIHRDP*LLTSVP
Trigger: TGGTACTGAAGTTAATAGCCATGGATCCCTATGAAT...TGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGACTGCATC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp CTAAGCAATTTTGTGGAAGAATCATGTGATCACAAAATGCCAAAGATGTCCATACTGGCCACTGCAATCTaGAGGTTGTTTGCGTCGGTG +
Preference number: 4 (lower is better)
Translates to: LSNFVEESCDHKMPKMSILATAI*RLFASV
Trigger: CACCGACGCAAACAACCTCCAGATTGCAGTGGCCAG...TATGGACATCTTTGGCATTTTGTGATCACATGATTCTTCCACAAAATTGCTTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp ATTATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCACTGGCCACTGCAATCTaGAGGTTGTTTGCGTCGGTG +
Preference number: 4 (lower is better)
Translates to: IIPCRVTCTILKESLTNALATAI*RLFASV
Trigger: CACCGACGCAAACAACCTCCAGATTGCAGTGGCCAG...TGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAATAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp TTCACTGGATCAGAGCTAGTGGCTGTGCTGCCTTTGAGAATATTTGATAAAAAGCCCTGGCCTCGGAATTaGTTTTTGTGGTTTCTTGGA +
Preference number: 4 (lower is better)
Translates to: FTGSELVAVLPLRIFDKKPWPRN*FLWFLG
Trigger: TCCAAGAAACCACAAAAACCAATTCCGAGGCCAGGG...CTTTTTATCAAATATTCTCAAAGGCAGCACAGCCACTAGCTCTGATCCAGTGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp CCTTGGCAGGGTAACTCCAACTATCTCAAAATGCTCTATTTGACCGATAAATGCGAAAATTCCCACAGATaGATTTCCACAGTCCCCTTC +
Preference number: 4 (lower is better)
Translates to: PWQGNSNYLKMLYLTDKCENSHR*ISTVPF
Trigger: GAAGGGGACTGTGGAAATCCATCTGTGGGAATTTTC...GCATTTATCGGTCAAATAGAGCATTTTGAGATAGTTGGAGTTACCCTGCCAAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
CDS-3UTR CCA 90 bp GAGTTTGGCATAGACCTCCGTAAAAGAGTCTTATTAACACGAGTGAGTCACCTTGAAAATTCCCACAGATaGATTTCCACAGTCCCCTTC +
Preference number: 4 (lower is better)
Translates to: EFGIDLRKRVLLTRVSHLENSHR*ISTVPF
Trigger: GAAGGGGACTGTGGAAATCCATCTGTGGGAATTTTC...AAGGTGACTCACTCGTGTTAATAAGACTCTTTTACGGAGGTCTATGCCAAACTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp TTCACTGGATCAGAGCTAGTGGCTGTGCTGCCTTTGAGAATATTTGATAAAAAGATTAGTTGTGCCCTCTaGAAGAAGCTGTCCATTGGG +
Preference number: 4 (lower is better)
Translates to: FTGSELVAVLPLRIFDKKISCAL*KKLSIG
Trigger: CCCAATGGACAGCTTCTTCCAGAGGGCACAACTAAT...CTTTTTATCAAATATTCTCAAAGGCAGCACAGCCACTAGCTCTGATCCAGTGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000100063.9
ENSMUST00000112354.3
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp ATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAAAAGCAGGGGTGGCGTTaGAACGGAAGATTGCTTTCC +
Preference number: 4 (lower is better)
Translates to: IPCRVTCTILKESLTNAKKQGWR*NGRLLS
Trigger: GGAAAGCAATCTTCCGTTTCAACGCCACCCCTGCTT...TTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAAT
42% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp CTAAGCAATTTTGTGGAAGAATCATGTGATCACAAAATGCCAAAGATGTCCATAAAGCAGGGGTGGCGTTaGAACGGAAGATTGCTTTCC +
Preference number: 4 (lower is better)
Translates to: LSNFVEESCDHKMPKMSIKQGWR*NGRLLS
Trigger: GGAAAGCAATCTTCCGTTTCAACGCCACCCCTGCTT...TATGGACATCTTTGGCATTTTGTGATCACATGATTCTTCCACAAAATTGCTTAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp ATTATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCATTCAGGACACTGCCCTaGATCTGTGCTGAAACCGCA +
Preference number: 4 (lower is better)
Translates to: IIPCRVTCTILKESLTNAFRTLP*ICAETA
Trigger: TGCGGTTTCAGCACAGATTCAGGGCAGTGTCCTGAA...TGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAATAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp ATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAATTCAGGACACTGCCCTaGATCTGTGCTGAAACCGCA +
Preference number: 4 (lower is better)
Translates to: IPCRVTCTILKESLTNAKFRTLP*ICAETA
Trigger: TGCGGTTTCAGCACAGATTCAGGGCAGTGTCCTGAA...TTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp GCTGTTCTCTGTGATGTGTGCCTGAAGTTCCAGCTAAGCAATTTTGTGGAAGAACGCAAGGGTACGGTTTaGGATATAGTTTTCTCTTTT +
Preference number: 4 (lower is better)
Translates to: AVLCDVCLKFQLSNFVEERKGTV*DIVFSF
Trigger: AAAAGAGAAAACTATATCTCAAACCGTACCCTTGCG...TTCTTCCACAAAATTGCTTAGCTGGAACTTCAGGCACACATCACAGAGAACAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp CCTTGGCAGGGTAACTCCAACTATCTCAAAATGCTCTATTTGACCGATAAATGCAGATACAGAAAATCGTaGGCCATCTGTGGTGTTAAC +
Preference number: 4 (lower is better)
Translates to: PWQGNSNYLKMLYLTDKCRYRKS*AICGVN
Trigger: GTTAACACCACAGATGGCTCACGATTTTCTGTATCT...GCATTTATCGGTCAAATAGAGCATTTTGAGATAGTTGGAGTTACCCTGCCAAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
CDS-3UTR TCA 90 bp ACATTAAGGATTGTATTTAAGAGATGCAGTCCACACTGTGCTCCAGTCATCTGCAGATACAGAAAATCGTaGGCCATCTGTGGTGTTAAC +
Preference number: 4 (lower is better)
Translates to: TLRIVFKRCSPHCAPVICRYRKS*AICGVN
Trigger: GTTAACACCACAGATGGCTCACGATTTTCTGTATCT...GCAGATGACTGGAGCACAGTGTGGACTGCATCTCTTAAATACAATCCTTAATGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp GAGTTTGGCATAGACCTCCGTAAAAGAGTCTTATTAACACGAGTGAGTCACCTTAGATACAGAAAATCGTaGGCCATCTGTGGTGTTAAC +
Preference number: 4 (lower is better)
Translates to: EFGIDLRKRVLLTRVSHLRYRKS*AICGVN
Trigger: GTTAACACCACAGATGGCTCACGATTTTCTGTATCT...AAGGTGACTCACTCGTGTTAATAAGACTCTTTTACGGAGGTCTATGCCAAACTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp CCAACGCAAAAAGTAGCCATGTGTAAATGCTTCTCTCTTGTTTCACTGGATCAGAGATACAGAAAATCGTaGGCCATCTGTGGTGTTAAC +
Preference number: 4 (lower is better)
Translates to: PTQKVAMCKCFSLVSLDQRYRKS*AICGVN
Trigger: GTTAACACCACAGATGGCTCACGATTTTCTGTATCT...CTGATCCAGTGAAACAAGAGAGAAGCATTTACACATGGCTACTTTTTGCGTTGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp TTCACTGGATCAGAGCTAGTGGCTGTGCTGCCTTTGAGAATATTTGATAAAAAGAGCTTTTCTTTCGGATaGTTTCCTCTGACCCTGACT +
Preference number: 4 (lower is better)
Translates to: FTGSELVAVLPLRIFDKKSFSFG*FPLTLT
Trigger: AGTCAGGGTCAGAGGAAAGCATCCGAAAGAAAAGCT...CTTTTTATCAAATATTCTCAAAGGCAGCACAGCCACTAGCTCTGATCCAGTGAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp TTGCAAATCACAGGTGAAATATTTACATCGAATTCCAAATCACAGCTAATCCTGGACTTGTTCTGCTGCTaGGCCTGGCAGAAAACAAGG +
Preference number: 4 (lower is better)
Translates to: LQITGEIFTSNSKSQLILDLFCC*AWQKTR
Trigger: CCTTGTTTTCTGCCAGGCGCAGCAGCAGAACAAGTC...CAGGATTAGCTGTGATTTGGAATTCGATGTAAATATTTCACCTGTGATTTGCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp CCAACGCAAAAAGTAGCCATGTGTAAATGCTTCTCTCTTGTTTCACTGGATCAGAATCTGGAGGTTGTTTaGGTCGGTGTCTTCTTCAAT +
Preference number: 4 (lower is better)
Translates to: PTQKVAMCKCFSLVSLDQNLEVV*VGVFFN
Trigger: ATTGAAGAAGACACCGACGCAAACAACCTCCAGATT...CTGATCCAGTGAAACAAGAGAGAAGCATTTACACATGGCTACTTTTTGCGTTGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp ACATTAAGGATTGTATTTAAGAGATGCAGTCCACACTGTGCTCCAGTCATCTGCGGAAATTGTGATCTTTaGTTATCTCCGCAAGGGTAC +
Preference number: 4 (lower is better)
Translates to: TLRIVFKRCSPHCAPVICGNCDL*LSPQGY
Trigger: GTACCCTTGCGGAGATAAGCAAAGATCACAATTTCC...GCAGATGACTGGAGCACAGTGTGGACTGCATCTCTTAAATACAATCCTTAATGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp ACATTAAGGATTGTATTTAAGAGATGCAGTCCACACTGTGCTCCAGTCATCTGCGGTTATCAACTGTGCTaGACTCTGAAGAACTTGATC +
Preference number: 4 (lower is better)
Translates to: TLRIVFKRCSPHCAPVICGYQLC*TLKNLI
Trigger: GATCAAGTTCTTCAGAGTGCAGCACAGTTGATAACC...GCAGATGACTGGAGCACAGTGTGGACTGCATCTCTTAAATACAATCCTTAATGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp GTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCAAGTACCTCACTAAGTCAAATATaGATCCTTGGAATTTGTTCC +
Preference number: 4 (lower is better)
Translates to: VHTVLQSSAQTSAKVSSTSLSQI*ILGICS
Trigger: GGAACAAATTCCAAGGATGCATATTTGACTTAGTGA...GGTACTTGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp GCTGTTCTCTGTGATGTGTGCCTGAAGTTCCAGCTAAGCAATTTTGTGGAAGAACTCTGGTACCCTTTGTaGCCATTTTCTAATGTTTCA +
Preference number: 4 (lower is better)
Translates to: AVLCDVCLKFQLSNFVEELWYPL*PFSNVS
Trigger: TGAAACATTAGAAAATGGGCACAAAGGGTACCAGAG...TTCTTCCACAAAATTGCTTAGCTGGAACTTCAGGCACACATCACAGAGAACAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100063.9
CDS-3UTR CCA 90 bp TTCACTGGATCAGAGCTAGTGGCTGTGCTGCCTTTGAGAATATTTGATAAAAAGTGTACTCTACGTTTTTaGTCCAATCTGGAGGGTTGC +
Preference number: 4 (lower is better)
Translates to: FTGSELVAVLPLRIFDKKCTLRF*SNLEGC
Trigger: GCAACCCTCCAGATTGGACCAAAAACGTAGAGTACA...CTTTTTATCAAATATTCTCAAAGGCAGCACAGCCACTAGCTCTGATCCAGTGAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp GATGCAGTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCAAAAGAAGAGCATCTTTaGATCCCTCCAAGTAATAAA +
Preference number: 4 (lower is better)
Translates to: DAVHTVLQSSAQTSAKVSKEEHL*IPPSNK
Trigger: TTTATTACTTGGAGGGATCCAAAGATGCTCTTCTTT...TGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGACTGCATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp AGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAAAGTAGCCATTCTTCGATGTTGGCCTaGTTCTGTTCCTCGTACGCC +
Preference number: 4 (lower is better)
Translates to: RVTCTILKESLTNAKSSHSSMLA*FCSSYA
Trigger: GGCGTACGAGGAACAGAACCAGGCCAACATCGAAGA...ATGGCTACTTTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp ATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAATCTTCGATGTTGGCCTaGTTCTGTTCCTCGTACGCC +
Preference number: 4 (lower is better)
Translates to: IPCRVTCTILKESLTNAKSSMLA*FCSSYA
Trigger: GGCGTACGAGGAACAGAACCAGGCCAACATCGAAGA...TTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp CCTTGGCAGGGTAACTCCAACTATCTCAAAATGCTCTATTTGACCGATAAATGCGTTCTTCTACTGTGTTaGTTAGAATGCTTGCTCTGC +
Preference number: 4 (lower is better)
Translates to: PWQGNSNYLKMLYLTDKCVLLLC*LECLLC
Trigger: GCAGAGCAAGCATTCTAACCAACACAGTAGAAGAAC...GCATTTATCGGTCAAATAGAGCATTTTGAGATAGTTGGAGTTACCCTGCCAAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
CDS-3UTR CCA 90 bp CCAACGCAAAAAGTAGCCATGTGTAAATGCTTCTCTCTTGTTTCACTGGATCAGGTTCTTCTACTGTGTTaGTTAGAATGCTTGCTCTGC +
Preference number: 4 (lower is better)
Translates to: PTQKVAMCKCFSLVSLDQVLLLC*LECLLC
Trigger: GCAGAGCAAGCATTCTAACCAACACAGTAGAAGAAC...CTGATCCAGTGAAACAAGAGAGAAGCATTTACACATGGCTACTTTTTGCGTTGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp AACTGCATTTCAGGGTACATCTCATTAGAAAGGAGACATTCAATTTGCTTAGACTGCCTCCTCTTCTCCTaGCAGAGGGTTATCAACTGT +
Preference number: 4 (lower is better)
Translates to: NCISGYISLERRHSICLDCLLFS*QRVINC
Trigger: ACAGTTGATAACCCTCTGCCAGGAGAAGAGGAGGCA...GTCTAAGCAAATTGAATGTCTCCTTTCTAATGAGATGTACCCTGAAATGCAGTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp CCTTGGCAGGGTAACTCCAACTATCTCAAAATGCTCTATTTGACCGATAAATGCGAGTCTATGTTAACTTaGCAGCATGGAAATCTCCTC +
Preference number: 4 (lower is better)
Translates to: PWQGNSNYLKMLYLTDKCESMLT*QHGNLL
Trigger: GAGGAGATTTCCATGCTGCCAAGTTAACATAGACTC...GCATTTATCGGTCAAATAGAGCATTTTGAGATAGTTGGAGTTACCCTGCCAAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
CDS-3UTR CCA 90 bp CCAACGCAAAAAGTAGCCATGTGTAAATGCTTCTCTCTTGTTTCACTGGATCAGTCAAATATGCATCCTTaGAATTTGTTCCCTGGCCTC +
Preference number: 4 (lower is better)
Translates to: PTQKVAMCKCFSLVSLDQSNMHP*NLFPGL
Trigger: GAGGCCAGGGAACAAATTCCAAGGATGCATATTTGA...CTGATCCAGTGAAACAAGAGAGAAGCATTTACACATGGCTACTTTTTGCGTTGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp GAGTTTGGCATAGACCTCCGTAAAAGAGTCTTATTAACACGAGTGAGTCACCTTTCAAATATGCATCCTTaGAATTTGTTCCCTGGCCTC +
Preference number: 4 (lower is better)
Translates to: EFGIDLRKRVLLTRVSHLSNMHP*NLFPGL
Trigger: GAGGCCAGGGAACAAATTCCAAGGATGCATATTTGA...AAGGTGACTCACTCGTGTTAATAAGACTCTTTTACGGAGGTCTATGCCAAACTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp GTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCAAGTACCATATTTCTCTTGATCTaGCTTTGTGACACTGTCATA +
Preference number: 4 (lower is better)
Translates to: VHTVLQSSAQTSAKVSSTIFLLI*LCDTVI
Trigger: TATGACAGTGTCACAAAGCCAGATCAAGAGAAATAT...GGTACTTGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp ATTATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAGCCCTGAATCTGTGCTaGAACCGCAAAGAAGAGCAT +
Preference number: 4 (lower is better)
Translates to: IIPCRVTCTILKESLTNAALNLC*NRKEEH
Trigger: ATGCTCTTCTTTGCGGTTTCAGCACAGATTCAGGGC...TGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAATAAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp ATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAAGCCCTGAATCTGTGCTaGAACCGCAAAGAAGAGCAT +
Preference number: 4 (lower is better)
Translates to: IPCRVTCTILKESLTNAKALNLC*NRKEEH
Trigger: ATGCTCTTCTTTGCGGTTTCAGCACAGATTCAGGGC...TTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp CCTTGGCAGGGTAACTCCAACTATCTCAAAATGCTCTATTTGACCGATAAATGCCGGTCTAACATCTGCTaGAATTCTAACTCTTTCTGT +
Preference number: 4 (lower is better)
Translates to: PWQGNSNYLKMLYLTDKCRSNIC*NSNSFC
Trigger: ACAGAAAGAGTTAGAATTTCAGCAGATGTTAGACCG...GCATTTATCGGTCAAATAGAGCATTTTGAGATAGTTGGAGTTACCCTGCCAAGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
CDS-3UTR TCA 90 bp GCTGTTCTCTGTGATGTGTGCCTGAAGTTCCAGCTAAGCAATTTTGTGGAAGAACAGATTAAAAATGTGTaGGCAAATCTGTACCACCAT +
Preference number: 4 (lower is better)
Translates to: AVLCDVCLKFQLSNFVEEQIKNV*ANLYHH
Trigger: ATGGTGGTACAGATTTGCTCACACATTTTTAATCTG...TTCTTCCACAAAATTGCTTAGCTGGAACTTCAGGCACACATCACAGAGAACAGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp GAGTTTGGCATAGACCTCCGTAAAAGAGTCTTATTAACACGAGTGAGTCACCTTCGCAAGGGTACGGTTTaGGATATAGTTTTCTCTTTT +
Preference number: 4 (lower is better)
Translates to: EFGIDLRKRVLLTRVSHLRKGTV*DIVFSF
Trigger: AAAAGAGAAAACTATATCTCAAACCGTACCCTTGCG...AAGGTGACTCACTCGTGTTAATAAGACTCTTTTACGGAGGTCTATGCCAAACTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp CCAACGCAAAAAGTAGCCATGTGTAAATGCTTCTCTCTTGTTTCACTGGATCAGCGCAAGGGTACGGTTTaGGATATAGTTTTCTCTTTT +
Preference number: 4 (lower is better)
Translates to: PTQKVAMCKCFSLVSLDQRKGTV*DIVFSF
Trigger: AAAAGAGAAAACTATATCTCAAACCGTACCCTTGCG...CTGATCCAGTGAAACAAGAGAGAAGCATTTACACATGGCTACTTTTTGCGTTGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp CCTTGGCAGGGTAACTCCAACTATCTCAAAATGCTCTATTTGACCGATAAATGCTCTTTGAGGAAATTGTaGTCTTTGCTTATCTCCGCA +
Preference number: 4 (lower is better)
Translates to: PWQGNSNYLKMLYLTDKCSLRKL*SLLISA
Trigger: TGCGGAGATAAGCAAAGATCACAATTTCCTCAAAGA...GCATTTATCGGTCAAATAGAGCATTTTGAGATAGTTGGAGTTACCCTGCCAAGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
CDS-3UTR TCA 90 bp ACATTAAGGATTGTATTTAAGAGATGCAGTCCACACTGTGCTCCAGTCATCTGCTCTTTGAGGAAATTGTaGTCTTTGCTTATCTCCGCA +
Preference number: 4 (lower is better)
Translates to: TLRIVFKRCSPHCAPVICSLRKL*SLLISA
Trigger: TGCGGAGATAAGCAAAGATCACAATTTCCTCAAAGA...GCAGATGACTGGAGCACAGTGTGGACTGCATCTCTTAAATACAATCCTTAATGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp AACTGCATTTCAGGGTACATCTCATTAGAAAGGAGACATTCAATTTGCTTAGACTATCCATCCAGCCCTTaGACGTTGCAACTTGAAGCA +
Preference number: 4 (lower is better)
Translates to: NCISGYISLERRHSICLDYPSSP*TLQLEA
Trigger: TGCTTCAAGTTGCAACGTTCAAGGGCTGGATGGATA...GTCTAAGCAAATTGAATGTCTCCTTTCTAATGAGATGTACCCTGAAATGCAGTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp CCAACGCAAAAAGTAGCCATGTGTAAATGCTTCTCTCTTGTTTCACTGGATCAGGTCATAAAGATATCTTaGCCTCCAAGCTTCTTCTTC +
Preference number: 4 (lower is better)
Translates to: PTQKVAMCKCFSLVSLDQVIKIS*PPSFFF
Trigger: GAAGAAGAAGCTTGGAGGTCAAGATATCTTTATGAC...CTGATCCAGTGAAACAAGAGAGAAGCATTTACACATGGCTACTTTTTGCGTTGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp TTGCAAATCACAGGTGAAATATTTACATCGAATTCCAAATCACAGCTAATCCTGAGAGACTTGTTCTGCTaGTGCGCCTGGCAGAAAACA +
Preference number: 4 (lower is better)
Translates to: LQITGEIFTSNSKSQLILRDLFC*CAWQKT
Trigger: TGTTTTCTGCCAGGCGCAGCAGCAGAACAAGTCTCT...CAGGATTAGCTGTGATTTGGAATTCGATGTAAATATTTCACCTGTGATTTGCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp ATTATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAGAGACTTGTTCTGCTaGTGCGCCTGGCAGAAAACA +
Preference number: 4 (lower is better)
Translates to: IIPCRVTCTILKESLTNARDLFC*CAWQKT
Trigger: TGTTTTCTGCCAGGCGCAGCAGCAGAACAAGTCTCT...TGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAATAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp ATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAAAGAGACTTGTTCTGCTaGTGCGCCTGGCAGAAAACA +
Preference number: 4 (lower is better)
Translates to: IPCRVTCTILKESLTNAKRDLFC*CAWQKT
Trigger: TGTTTTCTGCCAGGCGCAGCAGCAGAACAAGTCTCT...TTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp ATTATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCACTGTGTTGGTTAGAATaGTTGCTCTGCTCATGGCCC +
Preference number: 4 (lower is better)
Translates to: IIPCRVTCTILKESLTNALCWLE*LLCSWP
Trigger: GGGCCATGAGCAGAGCAAGCATTCTAACCAACACAG...TGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAATAAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp AGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAAAGTAGCCATCTGTGTTGGTTAGAATaGTTGCTCTGCTCATGGCCC +
Preference number: 4 (lower is better)
Translates to: RVTCTILKESLTNAKSSHLCWLE*LLCSWP
Trigger: GGGCCATGAGCAGAGCAAGCATTCTAACCAACACAG...ATGGCTACTTTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp CTAAGCAATTTTGTGGAAGAATCATGTGATCACAAAATGCCAAAGATGTCCATAGACTTTGTTTGGCTTTaGGATGAGGAGGGGAGGATC +
Preference number: 4 (lower is better)
Translates to: LSNFVEESCDHKMPKMSIDFVWL*DEEGRI
Trigger: GATCCTCCCCTCCTCATCGCAAAGCCAAACAAAGTC...TATGGACATCTTTGGCATTTTGTGATCACATGATTCTTCCACAAAATTGCTTAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp ATTATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAGACTTTGTTTGGCTTTaGGATGAGGAGGGGAGGATC +
Preference number: 4 (lower is better)
Translates to: IIPCRVTCTILKESLTNADFVWL*DEEGRI
Trigger: GATCCTCCCCTCCTCATCGCAAAGCCAAACAAAGTC...TGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAATAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp ACATTAAGGATTGTATTTAAGAGATGCAGTCCACACTGTGCTCCAGTCATCTGCCATCTTTGTGTCCCTTaGCTTTTTCTTCAGAAATGC +
Preference number: 4 (lower is better)
Translates to: TLRIVFKRCSPHCAPVICHLCVP*LFLQKC
Trigger: GCATTTCTGAAGAAAAAGCCAAGGGACACAAAGATG...GCAGATGACTGGAGCACAGTGTGGACTGCATCTCTTAAATACAATCCTTAATGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp ATTAAGTCACCCTTGATTGCAATAATGATTATTCCCTGTAGAGTTACATGCACACCTCTGACCCTGACTTaGACAGCTTCTCATCATCAC +
Preference number: 4 (lower is better)
Translates to: IKSPLIAIMIIPCRVTCTPLTLT*TASHHH
Trigger: GTGATGATGAGAAGCTGTCCAAGTCAGGGTCAGAGG...TGTGCATGTAACTCTACAGGGAATAATCATTATTGCAATCAAGGGTGACTTAAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp CTAAGCAATTTTGTGGAAGAATCATGTGATCACAAAATGCCAAAGATGTCCATACCTTCCACGCCGAGATaGAAGCTTTTCTTTCGGATG +
Preference number: 4 (lower is better)
Translates to: LSNFVEESCDHKMPKMSIPSTPR*KLFFRM
Trigger: CATCCGAAAGAAAAGCTTCCATCTCGGCGTGGAAGG...TATGGACATCTTTGGCATTTTGTGATCACATGATTCTTCCACAAAATTGCTTAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp TTGCAAATCACAGGTGAAATATTTACATCGAATTCCAAATCACAGCTAATCCTGCCTTCCACGCCGAGATaGAAGCTTTTCTTTCGGATG +
Preference number: 4 (lower is better)
Translates to: LQITGEIFTSNSKSQLILPSTPR*KLFFRM
Trigger: CATCCGAAAGAAAAGCTTCCATCTCGGCGTGGAAGG...CAGGATTAGCTGTGATTTGGAATTCGATGTAAATATTTCACCTGTGATTTGCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp ATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAACCTTTGCCTGAGATGTaGGTCATTCAGCATGTCCTC +
Preference number: 4 (lower is better)
Translates to: IPCRVTCTILKESLTNAKPLPEM*VIQHVL
Trigger: GAGGACATGCTGAATGACCCACATCTCAGGCAAAGG...TTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp TTGCAAATCACAGGTGAAATATTTACATCGAATTCCAAATCACAGCTAATCCTGCCTTTGCCTGAGATGTaGGTCATTCAGCATGTCCTC +
Preference number: 4 (lower is better)
Translates to: LQITGEIFTSNSKSQLILPLPEM*VIQHVL
Trigger: GAGGACATGCTGAATGACCCACATCTCAGGCAAAGG...CAGGATTAGCTGTGATTTGGAATTCGATGTAAATATTTCACCTGTGATTTGCAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp CCAACGCAAAAAGTAGCCATGTGTAAATGCTTCTCTCTTGTTTCACTGGATCAGTTTCTCTTTTGTTGTTaGGATCCGCTGTTCGTTTTG +
Preference number: 4 (lower is better)
Translates to: PTQKVAMCKCFSLVSLDQFLFCC*DPLFVL
Trigger: CAAAACGAACAGCGGATCCCAACAACAAAAGAGAAA...CTGATCCAGTGAAACAAGAGAGAAGCATTTACACATGGCTACTTTTTGCGTTGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp ATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAATGCCTCCTCTTCTCCTaGCAGAGGGTTATCAACTGT +
Preference number: 4 (lower is better)
Translates to: IPCRVTCTILKESLTNAKCLLFS*QRVINC
Trigger: ACAGTTGATAACCCTCTGCCAGGAGAAGAGGAGGCA...TTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp ATTAAGTCACCCTTGATTGCAATAATGATTATTCCCTGTAGAGTTACATGCACATGCCTCCTCTTCTCCTaGCAGAGGGTTATCAACTGT +
Preference number: 4 (lower is better)
Translates to: IKSPLIAIMIIPCRVTCTCLLFS*QRVINC
Trigger: ACAGTTGATAACCCTCTGCCAGGAGAAGAGGAGGCA...TGTGCATGTAACTCTACAGGGAATAATCATTATTGCAATCAAGGGTGACTTAAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp AACTGCATTTCAGGGTACATCTCATTAGAAAGGAGACATTCAATTTGCTTAGACGTTAACTTGGCAGCATaGAAATCTCCTCACACAGCC +
Preference number: 4 (lower is better)
Translates to: NCISGYISLERRHSICLDVNLAA*KSPHTA
Trigger: GGCTGTGTGAGGAGATTTCCATGCTGCCAAGTTAAC...GTCTAAGCAAATTGAATGTCTCCTTTCTAATGAGATGTACCCTGAAATGCAGTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp TTCACTGGATCAGAGCTAGTGGCTGTGCTGCCTTTGAGAATATTTGATAAAAAGTCAAATATGCATCCTTaGAATTTGTTCCCTGGCCTC +
Preference number: 4 (lower is better)
Translates to: FTGSELVAVLPLRIFDKKSNMHP*NLFPGL
Trigger: GAGGCCAGGGAACAAATTCCAAGGATGCATATTTGA...CTTTTTATCAAATATTCTCAAAGGCAGCACAGCCACTAGCTCTGATCCAGTGAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp ACATTAAGGATTGTATTTAAGAGATGCAGTCCACACTGTGCTCCAGTCATCTGCGAAACATTCCTACAATaGAGAGGATCACTACCACAA +
Preference number: 4 (lower is better)
Translates to: TLRIVFKRCSPHCAPVICETFLQ*RGSLPQ
Trigger: TTGTGGTAGTGATCCTCTCCATTGTAGGAATGTTTC...GCAGATGACTGGAGCACAGTGTGGACTGCATCTCTTAAATACAATCCTTAATGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp GAGTTTGGCATAGACCTCCGTAAAAGAGTCTTATTAACACGAGTGAGTCACCTTCAGATTAAAAATGTGTaGGCAAATCTGTACCACCAT +
Preference number: 4 (lower is better)
Translates to: EFGIDLRKRVLLTRVSHLQIKNV*ANLYHH
Trigger: ATGGTGGTACAGATTTGCTCACACATTTTTAATCTG...AAGGTGACTCACTCGTGTTAATAAGACTCTTTTACGGAGGTCTATGCCAAACTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp CCAACGCAAAAAGTAGCCATGTGTAAATGCTTCTCTCTTGTTTCACTGGATCAGCAGATTAAAAATGTGTaGGCAAATCTGTACCACCAT +
Preference number: 4 (lower is better)
Translates to: PTQKVAMCKCFSLVSLDQQIKNV*ANLYHH
Trigger: ATGGTGGTACAGATTTGCTCACACATTTTTAATCTG...CTGATCCAGTGAAACAAGAGAGAAGCATTTACACATGGCTACTTTTTGCGTTGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp CCTTGGCAGGGTAACTCCAACTATCTCAAAATGCTCTATTTGACCGATAAATGCCTGCAAGTACATTTTTaGATTCATCCGTCATTGGAT +
Preference number: 4 (lower is better)
Translates to: PWQGNSNYLKMLYLTDKCLQVHF*IHPSLD
Trigger: ATCCAATGACGGATGAATTCAAAAATGTACTTGCAG...GCATTTATCGGTCAAATAGAGCATTTTGAGATAGTTGGAGTTACCCTGCCAAGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
CDS-3UTR TCA 90 bp GAGTTTGGCATAGACCTCCGTAAAAGAGTCTTATTAACACGAGTGAGTCACCTTAAAATGACTTTAGAATaGATTCACGCAGGGTCTGTT +
Preference number: 4 (lower is better)
Translates to: EFGIDLRKRVLLTRVSHLKMTLE*IHAGSV
Trigger: AACAGACCCTGCGTGAATTCATTCTAAAGTCATTTT...AAGGTGACTCACTCGTGTTAATAAGACTCTTTTACGGAGGTCTATGCCAAACTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp CCTTGGCAGGGTAACTCCAACTATCTCAAAATGCTCTATTTGACCGATAAATGCAAAATGACTTTAGAATaGATTCACGCAGGGTCTGTT +
Preference number: 4 (lower is better)
Translates to: PWQGNSNYLKMLYLTDKCKMTLE*IHAGSV
Trigger: AACAGACCCTGCGTGAATTCATTCTAAAGTCATTTT...GCATTTATCGGTCAAATAGAGCATTTTGAGATAGTTGGAGTTACCCTGCCAAGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
CDS-3UTR TCA 90 bp TTCACTGGATCAGAGCTAGTGGCTGTGCTGCCTTTGAGAATATTTGATAAAAAGTCTTTGAGGAAATTGTaGTCTTTGCTTATCTCCGCA +
Preference number: 4 (lower is better)
Translates to: FTGSELVAVLPLRIFDKKSLRKL*SLLISA
Trigger: TGCGGAGATAAGCAAAGATCACAATTTCCTCAAAGA...CTTTTTATCAAATATTCTCAAAGGCAGCACAGCCACTAGCTCTGATCCAGTGAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp CTAAGCAATTTTGTGGAAGAATCATGTGATCACAAAATGCCAAAGATGTCCATATATCCATCCAGCCCTTaGACGTTGCAACTTGAAGCA +
Preference number: 4 (lower is better)
Translates to: LSNFVEESCDHKMPKMSIYPSSP*TLQLEA
Trigger: TGCTTCAAGTTGCAACGTTCAAGGGCTGGATGGATA...TATGGACATCTTTGGCATTTTGTGATCACATGATTCTTCCACAAAATTGCTTAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp ATTAAGTCACCCTTGATTGCAATAATGATTATTCCCTGTAGAGTTACATGCACATATCCATCCAGCCCTTaGACGTTGCAACTTGAAGCA +
Preference number: 4 (lower is better)
Translates to: IKSPLIAIMIIPCRVTCTYPSSP*TLQLEA
Trigger: TGCTTCAAGTTGCAACGTTCAAGGGCTGGATGGATA...TGTGCATGTAACTCTACAGGGAATAATCATTATTGCAATCAAGGGTGACTTAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp CCAACGCAAAAAGTAGCCATGTGTAAATGCTTCTCTCTTGTTTCACTGGATCAGGTTGAAACGGAAGATTaGTTTCCCTTTGTTCAATAC +
Preference number: 4 (lower is better)
Translates to: PTQKVAMCKCFSLVSLDQVETED*FPFVQY
Trigger: GTATTGAACAAAGGGAAAGCAATCTTCCGTTTCAAC...CTGATCCAGTGAAACAAGAGAGAAGCATTTACACATGGCTACTTTTTGCGTTGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp ATTAAGTCACCCTTGATTGCAATAATGATTATTCCCTGTAGAGTTACATGCACATACCCTTCAGGACACTaGCCTGAATCTGTGCTGAAA +
Preference number: 4 (lower is better)
Translates to: IKSPLIAIMIIPCRVTCTYPSGH*PESVLK
Trigger: TTTCAGCACAGATTCAGGGCAGTGTCCTGAAGGGTA...TGTGCATGTAACTCTACAGGGAATAATCATTATTGCAATCAAGGGTGACTTAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp ATTATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCATACCCTTCAGGACACTaGCCTGAATCTGTGCTGAAA +
Preference number: 4 (lower is better)
Translates to: IIPCRVTCTILKESLTNAYPSGH*PESVLK
Trigger: TTTCAGCACAGATTCAGGGCAGTGTCCTGAAGGGTA...TGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAATAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp GAGTTTGGCATAGACCTCCGTAAAAGAGTCTTATTAACACGAGTGAGTCACCTTGGTGTCTTCTTCAATTaGTGTAAGATTGTCAGAACT +
Preference number: 4 (lower is better)
Translates to: EFGIDLRKRVLLTRVSHLGVFFN*CKIVRT
Trigger: AGTTCTGACAATCTTACAGCAATTGAAGAAGACACC...AAGGTGACTCACTCGTGTTAATAAGACTCTTTTACGGAGGTCTATGCCAAACTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp TTGCAAATCACAGGTGAAATATTTACATCGAATTCCAAATCACAGCTAATCCTGCATGATGGAAGGGATTaGTCCTATGAGTGCGTTGAC +
Preference number: 4 (lower is better)
Translates to: LQITGEIFTSNSKSQLILHDGRD*SYECVD
Trigger: GTCAACGCACTCATAGGAGCAATCCCTTCCATCATG...CAGGATTAGCTGTGATTTGGAATTCGATGTAAATATTTCACCTGTGATTTGCAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp GAGTTTGGCATAGACCTCCGTAAAAGAGTCTTATTAACACGAGTGAGTCACCTTACACTCAGAACGGTTTaGAACTTGAGATACAGAAAA +
Preference number: 4 (lower is better)
Translates to: EFGIDLRKRVLLTRVSHLTLRTV*NLRYRK
Trigger: TTTTCTGTATCTCAAGTTGCAAACCGTTCTGAGTGT...AAGGTGACTCACTCGTGTTAATAAGACTCTTTTACGGAGGTCTATGCCAAACTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp TTCACTGGATCAGAGCTAGTGGCTGTGCTGCCTTTGAGAATATTTGATAAAAAGCATCTTTGTGTCCCTTaGCTTTTTCTTCAGAAATGC +
Preference number: 4 (lower is better)
Translates to: FTGSELVAVLPLRIFDKKHLCVP*LFLQKC
Trigger: GCATTTCTGAAGAAAAAGCCAAGGGACACAAAGATG...CTTTTTATCAAATATTCTCAAAGGCAGCACAGCCACTAGCTCTGATCCAGTGAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp ATTATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAGTCACTACTGGGCTTaGGACCTTCTTCCTCATCAT +
Preference number: 4 (lower is better)
Translates to: IIPCRVTCTILKESLTNASHYWA*DLLPHH
Trigger: ATGATGAGGAAGAAGGTCCCAAGCCCAGTAGTGACT...TGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAATAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp ACATTAAGGATTGTATTTAAGAGATGCAGTCCACACTGTGCTCCAGTCATCTGCATTCATAGGGATCCATaGCTATTAACTTCAGTACCA +
Preference number: 4 (lower is better)
Translates to: TLRIVFKRCSPHCAPVICIHRDP*LLTSVP
Trigger: TGGTACTGAAGTTAATAGCCATGGATCCCTATGAAT...GCAGATGACTGGAGCACAGTGTGGACTGCATCTCTTAAATACAATCCTTAATGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp ATTATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAGTTAACTTGGCAGCATaGAAATCTCCTCACACAGCC +
Preference number: 4 (lower is better)
Translates to: IIPCRVTCTILKESLTNAVNLAA*KSPHTA
Trigger: GGCTGTGTGAGGAGATTTCCATGCTGCCAAGTTAAC...TGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAATAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp ATTAAGTCACCCTTGATTGCAATAATGATTATTCCCTGTAGAGTTACATGCACAGTTAACTTGGCAGCATaGAAATCTCCTCACACAGCC +
Preference number: 4 (lower is better)
Translates to: IKSPLIAIMIIPCRVTCTVNLAA*KSPHTA
Trigger: GGCTGTGTGAGGAGATTTCCATGCTGCCAAGTTAAC...TGTGCATGTAACTCTACAGGGAATAATCATTATTGCAATCAAGGGTGACTTAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp ATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAACCCTGGCCTCGGAATTaGTTTTTGTGGTTTCTTGGA +
Preference number: 4 (lower is better)
Translates to: IPCRVTCTILKESLTNAKPWPRN*FLWFLG
Trigger: TCCAAGAAACCACAAAAACCAATTCCGAGGCCAGGG...TTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp TTCACTGGATCAGAGCTAGTGGCTGTGCTGCCTTTGAGAATATTTGATAAAAAGGAAACATTCCTACAATaGAGAGGATCACTACCACAA +
Preference number: 4 (lower is better)
Translates to: FTGSELVAVLPLRIFDKKETFLQ*RGSLPQ
Trigger: TTGTGGTAGTGATCCTCTCCATTGTAGGAATGTTTC...CTTTTTATCAAATATTCTCAAAGGCAGCACAGCCACTAGCTCTGATCCAGTGAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp TTGCAAATCACAGGTGAAATATTTACATCGAATTCCAAATCACAGCTAATCCTGACTGTCATAGGAAGGTaGAGAGATGGTAGAGGCTGT +
Preference number: 4 (lower is better)
Translates to: LQITGEIFTSNSKSQLILTVIGR*RDGRGC
Trigger: ACAGCCTCTACCATCTCTCCACCTTCCTATGACAGT...CAGGATTAGCTGTGATTTGGAATTCGATGTAAATATTTCACCTGTGATTTGCAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp AGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAAAGTAGCCATACTGTCATAGGAAGGTaGAGAGATGGTAGAGGCTGT +
Preference number: 4 (lower is better)
Translates to: RVTCTILKESLTNAKSSHTVIGR*RDGRGC
Trigger: ACAGCCTCTACCATCTCTCCACCTTCCTATGACAGT...ATGGCTACTTTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp TTGCAAATCACAGGTGAAATATTTACATCGAATTCCAAATCACAGCTAATCCTGATTAGTTGTGCCCTCTaGAAGAAGCTGTCCATTGGG +
Preference number: 4 (lower is better)
Translates to: LQITGEIFTSNSKSQLILISCAL*KKLSIG
Trigger: CCCAATGGACAGCTTCTTCCAGAGGGCACAACTAAT...CAGGATTAGCTGTGATTTGGAATTCGATGTAAATATTTCACCTGTGATTTGCAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100063.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp TTCACTGGATCAGAGCTAGTGGCTGTGCTGCCTTTGAGAATATTTGATAAAAAGCAGATTAAAAATGTGTaGGCAAATCTGTACCACCAT +
Preference number: 4 (lower is better)
Translates to: FTGSELVAVLPLRIFDKKQIKNV*ANLYHH
Trigger: ATGGTGGTACAGATTTGCTCACACATTTTTAATCTG...CTTTTTATCAAATATTCTCAAAGGCAGCACAGCCACTAGCTCTGATCCAGTGAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp TTCACTGGATCAGAGCTAGTGGCTGTGCTGCCTTTGAGAATATTTGATAAAAAGCTGCAAGTACATTTTTaGATTCATCCGTCATTGGAT +
Preference number: 4 (lower is better)
Translates to: FTGSELVAVLPLRIFDKKLQVHF*IHPSLD
Trigger: ATCCAATGACGGATGAATTCAAAAATGTACTTGCAG...CTTTTTATCAAATATTCTCAAAGGCAGCACAGCCACTAGCTCTGATCCAGTGAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp ATTAAGTCACCCTTGATTGCAATAATGATTATTCCCTGTAGAGTTACATGCACAAAATCATGTAGGTTTTaGCAGCAGCACGCAGTGTCT +
Preference number: 4 (lower is better)
Translates to: IKSPLIAIMIIPCRVTCTKSCRF*QQHAVS
Trigger: AGACACTGCGTGCTGCTGGCAAAACCTACATGATTT...TGTGCATGTAACTCTACAGGGAATAATCATTATTGCAATCAAGGGTGACTTAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp TTGCAAATCACAGGTGAAATATTTACATCGAATTCCAAATCACAGCTAATCCTGAAATCATGTAGGTTTTaGCAGCAGCACGCAGTGTCT +
Preference number: 4 (lower is better)
Translates to: LQITGEIFTSNSKSQLILKSCRF*QQHAVS
Trigger: AGACACTGCGTGCTGCTGGCAAAACCTACATGATTT...CAGGATTAGCTGTGATTTGGAATTCGATGTAAATATTTCACCTGTGATTTGCAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp CTAAGCAATTTTGTGGAAGAATCATGTGATCACAAAATGCCAAAGATGTCCATAAGCTTTTCTTTCGGATaGTTTCCTCTGACCCTGACT +
Preference number: 4 (lower is better)
Translates to: LSNFVEESCDHKMPKMSISFSFG*FPLTLT
Trigger: AGTCAGGGTCAGAGGAAAGCATCCGAAAGAAAAGCT...TATGGACATCTTTGGCATTTTGTGATCACATGATTCTTCCACAAAATTGCTTAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp AACTGCATTTCAGGGTACATCTCATTAGAAAGGAGACATTCAATTTGCTTAGACATAGTGAACCCCTTCTaGTCTCGTTGTCTCCAAAAA +
Preference number: 4 (lower is better)
Translates to: NCISGYISLERRHSICLDIVNPF*SRCLQK
Trigger: TTTTTGGAGACAACGAGAGCAGAAGGGGTTCACTAT...GTCTAAGCAAATTGAATGTCTCCTTTCTAATGAGATGTACCCTGAAATGCAGTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp AACTGCATTTCAGGGTACATCTCATTAGAAAGGAGACATTCAATTTGCTTAGACGACCAGGTTCCCGACTaGAAGTACATTTTTGAATTC +
Preference number: 4 (lower is better)
Translates to: NCISGYISLERRHSICLDDQVPD*KYIFEF
Trigger: GAATTCAAAAATGTACTTGCAGTCGGGAACCTGGTC...GTCTAAGCAAATTGAATGTCTCCTTTCTAATGAGATGTACCCTGAAATGCAGTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp TTCACTGGATCAGAGCTAGTGGCTGTGCTGCCTTTGAGAATATTTGATAAAAAGGGTGTCTTCTTCAATTaGTGTAAGATTGTCAGAACT +
Preference number: 4 (lower is better)
Translates to: FTGSELVAVLPLRIFDKKGVFFN*CKIVRT
Trigger: AGTTCTGACAATCTTACAGCAATTGAAGAAGACACC...CTTTTTATCAAATATTCTCAAAGGCAGCACAGCCACTAGCTCTGATCCAGTGAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp AACTGCATTTCAGGGTACATCTCATTAGAAAGGAGACATTCAATTTGCTTAGACGGAAATTGTGATCTTTaGTTATCTCCGCAAGGGTAC +
Preference number: 4 (lower is better)
Translates to: NCISGYISLERRHSICLDGNCDL*LSPQGY
Trigger: GTACCCTTGCGGAGATAAGCAAAGATCACAATTTCC...GTCTAAGCAAATTGAATGTCTCCTTTCTAATGAGATGTACCCTGAAATGCAGTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp ATTATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAGAGGGTTATCAACTGTaGTGCACTCTGAAGAACTTG +
Preference number: 4 (lower is better)
Translates to: IIPCRVTCTILKESLTNAEGYQL*CTLKNL
Trigger: CAAGTTCTTCAGAGTGCAGCACAGTTGATAACCCTC...TGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAATAAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp ATTAAGTCACCCTTGATTGCAATAATGATTATTCCCTGTAGAGTTACATGCACAGAGGGTTATCAACTGTaGTGCACTCTGAAGAACTTG +
Preference number: 4 (lower is better)
Translates to: IKSPLIAIMIIPCRVTCTEGYQL*CTLKNL
Trigger: CAAGTTCTTCAGAGTGCAGCACAGTTGATAACCCTC...TGTGCATGTAACTCTACAGGGAATAATCATTATTGCAATCAAGGGTGACTTAAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp ATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAAGAGGGTTATCAACTGTaGTGCACTCTGAAGAACTTG +
Preference number: 4 (lower is better)
Translates to: IPCRVTCTILKESLTNAKEGYQL*CTLKNL
Trigger: CAAGTTCTTCAGAGTGCAGCACAGTTGATAACCCTC...TTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp CCAACGCAAAAAGTAGCCATGTGTAAATGCTTCTCTCTTGTTTCACTGGATCAGTCACTAAGTCAAATATaGATCCTTGGAATTTGTTCC +
Preference number: 4 (lower is better)
Translates to: PTQKVAMCKCFSLVSLDQSLSQI*ILGICS
Trigger: GGAACAAATTCCAAGGATGCATATTTGACTTAGTGA...CTGATCCAGTGAAACAAGAGAGAAGCATTTACACATGGCTACTTTTTGCGTTGG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp ACATTAAGGATTGTATTTAAGAGATGCAGTCCACACTGTGCTCCAGTCATCTGCTCACTAAGTCAAATATaGATCCTTGGAATTTGTTCC +
Preference number: 4 (lower is better)
Translates to: TLRIVFKRCSPHCAPVICSLSQI*ILGICS
Trigger: GGAACAAATTCCAAGGATGCATATTTGACTTAGTGA...GCAGATGACTGGAGCACAGTGTGGACTGCATCTCTTAAATACAATCCTTAATGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp ATTAAGTCACCCTTGATTGCAATAATGATTATTCCCTGTAGAGTTACATGCACATGTACTCTACGTTTTTaGTCCAATCTGGAGGGTTGC +
Preference number: 4 (lower is better)
Translates to: IKSPLIAIMIIPCRVTCTCTLRF*SNLEGC
Trigger: GCAACCCTCCAGATTGGACCAAAAACGTAGAGTACA...TGTGCATGTAACTCTACAGGGAATAATCATTATTGCAATCAAGGGTGACTTAAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp CTAAGCAATTTTGTGGAAGAATCATGTGATCACAAAATGCCAAAGATGTCCATATGTACTCTACGTTTTTaGTCCAATCTGGAGGGTTGC +
Preference number: 4 (lower is better)
Translates to: LSNFVEESCDHKMPKMSICTLRF*SNLEGC
Trigger: GCAACCCTCCAGATTGGACCAAAAACGTAGAGTACA...TATGGACATCTTTGGCATTTTGTGATCACATGATTCTTCCACAAAATTGCTTAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp CCAACGCAAAAAGTAGCCATGTGTAAATGCTTCTCTCTTGTTTCACTGGATCAGAAAGAAGAGCATCTTTaGATCCCTCCAAGTAATAAA +
Preference number: 4 (lower is better)
Translates to: PTQKVAMCKCFSLVSLDQKEEHL*IPPSNK
Trigger: TTTATTACTTGGAGGGATCCAAAGATGCTCTTCTTT...CTGATCCAGTGAAACAAGAGAGAAGCATTTACACATGGCTACTTTTTGCGTTGG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp GAGTTTGGCATAGACCTCCGTAAAAGAGTCTTATTAACACGAGTGAGTCACCTTAAAGAAGAGCATCTTTaGATCCCTCCAAGTAATAAA +
Preference number: 4 (lower is better)
Translates to: EFGIDLRKRVLLTRVSHLKEEHL*IPPSNK
Trigger: TTTATTACTTGGAGGGATCCAAAGATGCTCTTCTTT...AAGGTGACTCACTCGTGTTAATAAGACTCTTTTACGGAGGTCTATGCCAAACTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp ATTATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAGAAAATTCCCACAGATaGATTTCCACAGTCCCCTTC +
Preference number: 4 (lower is better)
Translates to: IIPCRVTCTILKESLTNAENSHR*ISTVPF
Trigger: GAAGGGGACTGTGGAAATCCATCTGTGGGAATTTTC...TGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAATAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp AGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAAAGTAGCCATGAAAATTCCCACAGATaGATTTCCACAGTCCCCTTC +
Preference number: 4 (lower is better)
Translates to: RVTCTILKESLTNAKSSHENSHR*ISTVPF
Trigger: GAAGGGGACTGTGGAAATCCATCTGTGGGAATTTTC...ATGGCTACTTTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp ATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAAGAAAATTCCCACAGATaGATTTCCACAGTCCCCTTC +
Preference number: 4 (lower is better)
Translates to: IPCRVTCTILKESLTNAKENSHR*ISTVPF
Trigger: GAAGGGGACTGTGGAAATCCATCTGTGGGAATTTTC...TTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
3UTR CAA 72 bp TGGCAGGGTAACTCCAACTATCTCAAAATGCTCTATTaGACCGATAAATGCAAAATCGATTTCACAGTATGG +
Preference number: 4 (lower is better)
Translates to: WQGNSNYLKMLY*TDKCKIDFTVW
Trigger: CCATACTGTGAAATCGATTTTGCATTTATCGGTCAAATAGAGCATTTTGAGATAGTTGGAGTTACCCTGCCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
CDS-3UTR GCA 90 bp ATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAAATAGTGAACCCCTTCTaGTCTCGTTGTCTCCAAAAA +
Preference number: 4 (lower is better)
Translates to: IPCRVTCTILKESLTNAKIVNPF*SRCLQK
Trigger: TTTTTGGAGACAACGAGAGCAGAAGGGGTTCACTAT...TTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp TTGCAAATCACAGGTGAAATATTTACATCGAATTCCAAATCACAGCTAATCCTGATAGTGAACCCCTTCTaGTCTCGTTGTCTCCAAAAA +
Preference number: 4 (lower is better)
Translates to: LQITGEIFTSNSKSQLILIVNPF*SRCLQK
Trigger: TTTTTGGAGACAACGAGAGCAGAAGGGGTTCACTAT...CAGGATTAGCTGTGATTTGGAATTCGATGTAAATATTTCACCTGTGATTTGCAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp ATTATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAGACCAGGTTCCCGACTaGAAGTACATTTTTGAATTC +
Preference number: 4 (lower is better)
Translates to: IIPCRVTCTILKESLTNADQVPD*KYIFEF
Trigger: GAATTCAAAAATGTACTTGCAGTCGGGAACCTGGTC...TGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAATAAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp ATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAAGACCAGGTTCCCGACTaGAAGTACATTTTTGAATTC +
Preference number: 4 (lower is better)
Translates to: IPCRVTCTILKESLTNAKDQVPD*KYIFEF
Trigger: GAATTCAAAAATGTACTTGCAGTCGGGAACCTGGTC...TTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp TTGCAAATCACAGGTGAAATATTTACATCGAATTCCAAATCACAGCTAATCCTGAATCTGGAGGTTGTTTaGGTCGGTGTCTTCTTCAAT +
Preference number: 4 (lower is better)
Translates to: LQITGEIFTSNSKSQLILNLEVV*VGVFFN
Trigger: ATTGAAGAAGACACCGACGCAAACAACCTCCAGATT...CAGGATTAGCTGTGATTTGGAATTCGATGTAAATATTTCACCTGTGATTTGCAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp ATTATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAGGAAATTGTGATCTTTaGTTATCTCCGCAAGGGTAC +
Preference number: 4 (lower is better)
Translates to: IIPCRVTCTILKESLTNAGNCDL*LSPQGY
Trigger: GTACCCTTGCGGAGATAAGCAAAGATCACAATTTCC...TGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAATAAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp ATTAAGTCACCCTTGATTGCAATAATGATTATTCCCTGTAGAGTTACATGCACAGGAAATTGTGATCTTTaGTTATCTCCGCAAGGGTAC +
Preference number: 4 (lower is better)
Translates to: IKSPLIAIMIIPCRVTCTGNCDL*LSPQGY
Trigger: GTACCCTTGCGGAGATAAGCAAAGATCACAATTTCC...TGTGCATGTAACTCTACAGGGAATAATCATTATTGCAATCAAGGGTGACTTAAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp AGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAAAGTAGCCATGGTTATCAACTGTGCTaGACTCTGAAGAACTTGATC +
Preference number: 4 (lower is better)
Translates to: RVTCTILKESLTNAKSSHGYQLC*TLKNLI
Trigger: GATCAAGTTCTTCAGAGTGCAGCACAGTTGATAACC...ATGGCTACTTTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp ATTATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAGGTTATCAACTGTGCTaGACTCTGAAGAACTTGATC +
Preference number: 4 (lower is better)
Translates to: IIPCRVTCTILKESLTNAGYQLC*TLKNLI
Trigger: GATCAAGTTCTTCAGAGTGCAGCACAGTTGATAACC...TGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAATAAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp TTCACTGGATCAGAGCTAGTGGCTGTGCTGCCTTTGAGAATATTTGATAAAAAGTCACTAAGTCAAATATaGATCCTTGGAATTTGTTCC +
Preference number: 4 (lower is better)
Translates to: FTGSELVAVLPLRIFDKKSLSQI*ILGICS
Trigger: GGAACAAATTCCAAGGATGCATATTTGACTTAGTGA...CTTTTTATCAAATATTCTCAAAGGCAGCACAGCCACTAGCTCTGATCCAGTGAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp ATTATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAGTTCTTCTACTGTGTTaGTTAGAATGCTTGCTCTGC +
Preference number: 4 (lower is better)
Translates to: IIPCRVTCTILKESLTNAVLLLC*LECLLC
Trigger: GCAGAGCAAGCATTCTAACCAACACAGTAGAAGAAC...TGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAATAAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp AGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAAAGTAGCCATGTTCTTCTACTGTGTTaGTTAGAATGCTTGCTCTGC +
Preference number: 4 (lower is better)
Translates to: RVTCTILKESLTNAKSSHVLLLC*LECLLC
Trigger: GCAGAGCAAGCATTCTAACCAACACAGTAGAAGAAC...ATGGCTACTTTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp AACTGCATTTCAGGGTACATCTCATTAGAAAGGAGACATTCAATTTGCTTAGACTTTCTCTTTTGTTGTTaGGATCCGCTGTTCGTTTTG +
Preference number: 4 (lower is better)
Translates to: NCISGYISLERRHSICLDFLFCC*DPLFVL
Trigger: CAAAACGAACAGCGGATCCCAACAACAAAAGAGAAA...GTCTAAGCAAATTGAATGTCTCCTTTCTAATGAGATGTACCCTGAAATGCAGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp TTGCAAATCACAGGTGAAATATTTACATCGAATTCCAAATCACAGCTAATCCTGGAGTCTATGTTAACTTaGCAGCATGGAAATCTCCTC +
Preference number: 4 (lower is better)
Translates to: LQITGEIFTSNSKSQLILESMLT*QHGNLL
Trigger: GAGGAGATTTCCATGCTGCCAAGTTAACATAGACTC...CAGGATTAGCTGTGATTTGGAATTCGATGTAAATATTTCACCTGTGATTTGCAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp ATTATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAGAGTCTATGTTAACTTaGCAGCATGGAAATCTCCTC +
Preference number: 4 (lower is better)
Translates to: IIPCRVTCTILKESLTNAESMLT*QHGNLL
Trigger: GAGGAGATTTCCATGCTGCCAAGTTAACATAGACTC...TGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAATAAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp AGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAAAGTAGCCATGAGTCTATGTTAACTTaGCAGCATGGAAATCTCCTC +
Preference number: 4 (lower is better)
Translates to: RVTCTILKESLTNAKSSHESMLT*QHGNLL
Trigger: GAGGAGATTTCCATGCTGCCAAGTTAACATAGACTC...ATGGCTACTTTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp ATTAAGTCACCCTTGATTGCAATAATGATTATTCCCTGTAGAGTTACATGCACATCAAATATGCATCCTTaGAATTTGTTCCCTGGCCTC +
Preference number: 4 (lower is better)
Translates to: IKSPLIAIMIIPCRVTCTSNMHP*NLFPGL
Trigger: GAGGCCAGGGAACAAATTCCAAGGATGCATATTTGA...TGTGCATGTAACTCTACAGGGAATAATCATTATTGCAATCAAGGGTGACTTAAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp ATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAATCAAATATGCATCCTTaGAATTTGTTCCCTGGCCTC +
Preference number: 4 (lower is better)
Translates to: IPCRVTCTILKESLTNAKSNMHP*NLFPGL
Trigger: GAGGCCAGGGAACAAATTCCAAGGATGCATATTTGA...TTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp TTGCAAATCACAGGTGAAATATTTACATCGAATTCCAAATCACAGCTAATCCTGACCTTACACTTTCTCTaGTACCCTTTGTGCCCATTT +
Preference number: 4 (lower is better)
Translates to: LQITGEIFTSNSKSQLILTLHFL*YPLCPF
Trigger: AAATGGGCACAAAGGGTACCAGAGAAAGTGTAAGGT...CAGGATTAGCTGTGATTTGGAATTCGATGTAAATATTTCACCTGTGATTTGCAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100063.9
CDS-3UTR TCA 90 bp ATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAACGGTCTAACATCTGCTaGAATTCTAACTCTTTCTGT +
Preference number: 4 (lower is better)
Translates to: IPCRVTCTILKESLTNAKRSNIC*NSNSFC
Trigger: ACAGAAAGAGTTAGAATTTCAGCAGATGTTAGACCG...TTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp ATTAAGTCACCCTTGATTGCAATAATGATTATTCCCTGTAGAGTTACATGCACACGGTCTAACATCTGCTaGAATTCTAACTCTTTCTGT +
Preference number: 4 (lower is better)
Translates to: IKSPLIAIMIIPCRVTCTRSNIC*NSNSFC
Trigger: ACAGAAAGAGTTAGAATTTCAGCAGATGTTAGACCG...TGTGCATGTAACTCTACAGGGAATAATCATTATTGCAATCAAGGGTGACTTAAT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp TTGCAAATCACAGGTGAAATATTTACATCGAATTCCAAATCACAGCTAATCCTGCGGTCTAACATCTGCTaGAATTCTAACTCTTTCTGT +
Preference number: 4 (lower is better)
Translates to: LQITGEIFTSNSKSQLILRSNIC*NSNSFC
Trigger: ACAGAAAGAGTTAGAATTTCAGCAGATGTTAGACCG...CAGGATTAGCTGTGATTTGGAATTCGATGTAAATATTTCACCTGTGATTTGCAA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp AACTGCATTTCAGGGTACATCTCATTAGAAAGGAGACATTCAATTTGCTTAGACAAAATGACTTTAGAATaGATTCACGCAGGGTCTGTT +
Preference number: 4 (lower is better)
Translates to: NCISGYISLERRHSICLDKMTLE*IHAGSV
Trigger: AACAGACCCTGCGTGAATTCATTCTAAAGTCATTTT...GTCTAAGCAAATTGAATGTCTCCTTTCTAATGAGATGTACCCTGAAATGCAGTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp TTGCAAATCACAGGTGAAATATTTACATCGAATTCCAAATCACAGCTAATCCTGCGCAAGGGTACGGTTTaGGATATAGTTTTCTCTTTT +
Preference number: 4 (lower is better)
Translates to: LQITGEIFTSNSKSQLILRKGTV*DIVFSF
Trigger: AAAAGAGAAAACTATATCTCAAACCGTACCCTTGCG...CAGGATTAGCTGTGATTTGGAATTCGATGTAAATATTTCACCTGTGATTTGCAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp CTAAGCAATTTTGTGGAAGAATCATGTGATCACAAAATGCCAAAGATGTCCATATCTTTGAGGAAATTGTaGTCTTTGCTTATCTCCGCA +
Preference number: 4 (lower is better)
Translates to: LSNFVEESCDHKMPKMSISLRKL*SLLISA
Trigger: TGCGGAGATAAGCAAAGATCACAATTTCCTCAAAGA...TATGGACATCTTTGGCATTTTGTGATCACATGATTCTTCCACAAAATTGCTTAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp ATTAAGTCACCCTTGATTGCAATAATGATTATTCCCTGTAGAGTTACATGCACATCTTTGAGGAAATTGTaGTCTTTGCTTATCTCCGCA +
Preference number: 4 (lower is better)
Translates to: IKSPLIAIMIIPCRVTCTSLRKL*SLLISA
Trigger: TGCGGAGATAAGCAAAGATCACAATTTCCTCAAAGA...TGTGCATGTAACTCTACAGGGAATAATCATTATTGCAATCAAGGGTGACTTAAT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp ATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAAGTCATAAAGATATCTTaGCCTCCAAGCTTCTTCTTC +
Preference number: 4 (lower is better)
Translates to: IPCRVTCTILKESLTNAKVIKIS*PPSFFF
Trigger: GAAGAAGAAGCTTGGAGGTCAAGATATCTTTATGAC...TTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp AGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAAAGTAGCCATGTCATAAAGATATCTTaGCCTCCAAGCTTCTTCTTC +
Preference number: 4 (lower is better)
Translates to: RVTCTILKESLTNAKSSHVIKIS*PPSFFF
Trigger: GAAGAAGAAGCTTGGAGGTCAAGATATCTTTATGAC...ATGGCTACTTTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp CTAAGCAATTTTGTGGAAGAATCATGTGATCACAAAATGCCAAAGATGTCCATAGTCATAAAGATATCTTaGCCTCCAAGCTTCTTCTTC +
Preference number: 4 (lower is better)
Translates to: LSNFVEESCDHKMPKMSIVIKIS*PPSFFF
Trigger: GAAGAAGAAGCTTGGAGGTCAAGATATCTTTATGAC...TATGGACATCTTTGGCATTTTGTGATCACATGATTCTTCCACAAAATTGCTTAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp ATTATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCACATCTTTGTGTCCCTTaGCTTTTTCTTCAGAAATGC +
Preference number: 4 (lower is better)
Translates to: IIPCRVTCTILKESLTNAHLCVP*LFLQKC
Trigger: GCATTTCTGAAGAAAAAGCCAAGGGACACAAAGATG...TGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAATAAT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp ATTAAGTCACCCTTGATTGCAATAATGATTATTCCCTGTAGAGTTACATGCACACATCTTTGTGTCCCTTaGCTTTTTCTTCAGAAATGC +
Preference number: 4 (lower is better)
Translates to: IKSPLIAIMIIPCRVTCTHLCVP*LFLQKC
Trigger: GCATTTCTGAAGAAAAAGCCAAGGGACACAAAGATG...TGTGCATGTAACTCTACAGGGAATAATCATTATTGCAATCAAGGGTGACTTAAT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp AGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAAAGTAGCCATCATCTTTGTGTCCCTTaGCTTTTTCTTCAGAAATGC +
Preference number: 4 (lower is better)
Translates to: RVTCTILKESLTNAKSSHHLCVP*LFLQKC
Trigger: GCATTTCTGAAGAAAAAGCCAAGGGACACAAAGATG...ATGGCTACTTTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp AACTGCATTTCAGGGTACATCTCATTAGAAAGGAGACATTCAATTTGCTTAGACATTCATAGGGATCCATaGCTATTAACTTCAGTACCA +
Preference number: 4 (lower is better)
Translates to: NCISGYISLERRHSICLDIHRDP*LLTSVP
Trigger: TGGTACTGAAGTTAATAGCCATGGATCCCTATGAAT...GTCTAAGCAAATTGAATGTCTCCTTTCTAATGAGATGTACCCTGAAATGCAGTT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp ATTATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCATTTCTCTTTTGTTGTTaGGATCCGCTGTTCGTTTTG +
Preference number: 4 (lower is better)
Translates to: IIPCRVTCTILKESLTNAFLFCC*DPLFVL
Trigger: CAAAACGAACAGCGGATCCCAACAACAAAAGAGAAA...TGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAATAAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp ATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAATTTCTCTTTTGTTGTTaGGATCCGCTGTTCGTTTTG +
Preference number: 4 (lower is better)
Translates to: IPCRVTCTILKESLTNAKFLFCC*DPLFVL
Trigger: CAAAACGAACAGCGGATCCCAACAACAAAAGAGAAA...TTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp ATTAAGTCACCCTTGATTGCAATAATGATTATTCCCTGTAGAGTTACATGCACAGAAACATTCCTACAATaGAGAGGATCACTACCACAA +
Preference number: 4 (lower is better)
Translates to: IKSPLIAIMIIPCRVTCTETFLQ*RGSLPQ
Trigger: TTGTGGTAGTGATCCTCTCCATTGTAGGAATGTTTC...TGTGCATGTAACTCTACAGGGAATAATCATTATTGCAATCAAGGGTGACTTAAT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp ATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAACAGATTAAAAATGTGTaGGCAAATCTGTACCACCAT +
Preference number: 4 (lower is better)
Translates to: IPCRVTCTILKESLTNAKQIKNV*ANLYHH
Trigger: ATGGTGGTACAGATTTGCTCACACATTTTTAATCTG...TTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAAT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp CTAAGCAATTTTGTGGAAGAATCATGTGATCACAAAATGCCAAAGATGTCCATACTGCAAGTACATTTTTaGATTCATCCGTCATTGGAT +
Preference number: 4 (lower is better)
Translates to: LSNFVEESCDHKMPKMSILQVHF*IHPSLD
Trigger: ATCCAATGACGGATGAATTCAAAAATGTACTTGCAG...TATGGACATCTTTGGCATTTTGTGATCACATGATTCTTCCACAAAATTGCTTAG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp ATTAAGTCACCCTTGATTGCAATAATGATTATTCCCTGTAGAGTTACATGCACACTGCAAGTACATTTTTaGATTCATCCGTCATTGGAT +
Preference number: 4 (lower is better)
Translates to: IKSPLIAIMIIPCRVTCTLQVHF*IHPSLD
Trigger: ATCCAATGACGGATGAATTCAAAAATGTACTTGCAG...TGTGCATGTAACTCTACAGGGAATAATCATTATTGCAATCAAGGGTGACTTAAT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp TTGCAAATCACAGGTGAAATATTTACATCGAATTCCAAATCACAGCTAATCCTGCTGCAAGTACATTTTTaGATTCATCCGTCATTGGAT +
Preference number: 4 (lower is better)
Translates to: LQITGEIFTSNSKSQLILLQVHF*IHPSLD
Trigger: ATCCAATGACGGATGAATTCAAAAATGTACTTGCAG...CAGGATTAGCTGTGATTTGGAATTCGATGTAAATATTTCACCTGTGATTTGCAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp ATTAAGTCACCCTTGATTGCAATAATGATTATTCCCTGTAGAGTTACATGCACAAAAATGACTTTAGAATaGATTCACGCAGGGTCTGTT +
Preference number: 4 (lower is better)
Translates to: IKSPLIAIMIIPCRVTCTKMTLE*IHAGSV
Trigger: AACAGACCCTGCGTGAATTCATTCTAAAGTCATTTT...TGTGCATGTAACTCTACAGGGAATAATCATTATTGCAATCAAGGGTGACTTAAT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR TCA 90 bp TTGCAAATCACAGGTGAAATATTTACATCGAATTCCAAATCACAGCTAATCCTGAAAATGACTTTAGAATaGATTCACGCAGGGTCTGTT +
Preference number: 4 (lower is better)
Translates to: LQITGEIFTSNSKSQLILKMTLE*IHAGSV
Trigger: AACAGACCCTGCGTGAATTCATTCTAAAGTCATTTT...CAGGATTAGCTGTGATTTGGAATTCGATGTAAATATTTCACCTGTGATTTGCAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp ATTAAGTCACCCTTGATTGCAATAATGATTATTCCCTGTAGAGTTACATGCACAGTTGAAACGGAAGATTaGTTTCCCTTTGTTCAATAC +
Preference number: 4 (lower is better)
Translates to: IKSPLIAIMIIPCRVTCTVETED*FPFVQY
Trigger: GTATTGAACAAAGGGAAAGCAATCTTCCGTTTCAAC...TGTGCATGTAACTCTACAGGGAATAATCATTATTGCAATCAAGGGTGACTTAAT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp AGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAAAGTAGCCATTTCCGGAAACATTTATaGTTCAAGTTGCCCATAAAC +
Preference number: 4 (lower is better)
Translates to: RVTCTILKESLTNAKSSHFRKHL*FKLPIN
Trigger: GTTTATGGGCAACTTGAAGCATAAATGTTTCCGGAA...ATGGCTACTTTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp ATTATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAGGTGTCTTCTTCAATTaGTGTAAGATTGTCAGAACT +
Preference number: 4 (lower is better)
Translates to: IIPCRVTCTILKESLTNAGVFFN*CKIVRT
Trigger: AGTTCTGACAATCTTACAGCAATTGAAGAAGACACC...TGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAATAAT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp ATTAAGTCACCCTTGATTGCAATAATGATTATTCCCTGTAGAGTTACATGCACAGGTGTCTTCTTCAATTaGTGTAAGATTGTCAGAACT +
Preference number: 4 (lower is better)
Translates to: IKSPLIAIMIIPCRVTCTGVFFN*CKIVRT
Trigger: AGTTCTGACAATCTTACAGCAATTGAAGAAGACACC...TGTGCATGTAACTCTACAGGGAATAATCATTATTGCAATCAAGGGTGACTTAAT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp CTAAGCAATTTTGTGGAAGAATCATGTGATCACAAAATGCCAAAGATGTCCATAACACTCAGAACGGTTTaGAACTTGAGATACAGAAAA +
Preference number: 4 (lower is better)
Translates to: LSNFVEESCDHKMPKMSITLRTV*NLRYRK
Trigger: TTTTCTGTATCTCAAGTTGCAAACCGTTCTGAGTGT...TATGGACATCTTTGGCATTTTGTGATCACATGATTCTTCCACAAAATTGCTTAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp AGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAAAGTAGCCATACACTCAGAACGGTTTaGAACTTGAGATACAGAAAA +
Preference number: 4 (lower is better)
Translates to: RVTCTILKESLTNAKSSHTLRTV*NLRYRK
Trigger: TTTTCTGTATCTCAAGTTGCAAACCGTTCTGAGTGT...ATGGCTACTTTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp AGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAAAGTAGCCATATTCATAGGGATCCATaGCTATTAACTTCAGTACCA +
Preference number: 4 (lower is better)
Translates to: RVTCTILKESLTNAKSSHIHRDP*LLTSVP
Trigger: TGGTACTGAAGTTAATAGCCATGGATCCCTATGAAT...ATGGCTACTTTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp TTGCAAATCACAGGTGAAATATTTACATCGAATTCCAAATCACAGCTAATCCTGATTCATAGGGATCCATaGCTATTAACTTCAGTACCA +
Preference number: 4 (lower is better)
Translates to: LQITGEIFTSNSKSQLILIHRDP*LLTSVP
Trigger: TGGTACTGAAGTTAATAGCCATGGATCCCTATGAAT...CAGGATTAGCTGTGATTTGGAATTCGATGTAAATATTTCACCTGTGATTTGCAA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp AACTGCATTTCAGGGTACATCTCATTAGAAAGGAGACATTCAATTTGCTTAGACATATTTCTCTTGATCTaGCTTTGTGACACTGTCATA +
Preference number: 4 (lower is better)
Translates to: NCISGYISLERRHSICLDIFLLI*LCDTVI
Trigger: TATGACAGTGTCACAAAGCCAGATCAAGAGAAATAT...GTCTAAGCAAATTGAATGTCTCCTTTCTAATGAGATGTACCCTGAAATGCAGTT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR GCA 90 bp TTGCAAATCACAGGTGAAATATTTACATCGAATTCCAAATCACAGCTAATCCTGTCACTAAGTCAAATATaGATCCTTGGAATTTGTTCC +
Preference number: 4 (lower is better)
Translates to: LQITGEIFTSNSKSQLILSLSQI*ILGICS
Trigger: GGAACAAATTCCAAGGATGCATATTTGACTTAGTGA...CAGGATTAGCTGTGATTTGGAATTCGATGTAAATATTTCACCTGTGATTTGCAA
34% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp AGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAAAGTAGCCATAAAGAAGAGCATCTTTaGATCCCTCCAAGTAATAAA +
Preference number: 4 (lower is better)
Translates to: RVTCTILKESLTNAKSSHKEEHL*IPPSNK
Trigger: TTTATTACTTGGAGGGATCCAAAGATGCTCTTCTTT...ATGGCTACTTTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCT
34% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp ATTAAGTCACCCTTGATTGCAATAATGATTATTCCCTGTAGAGTTACATGCACAAAAGAAGAGCATCTTTaGATCCCTCCAAGTAATAAA +
Preference number: 4 (lower is better)
Translates to: IKSPLIAIMIIPCRVTCTKEEHL*IPPSNK
Trigger: TTTATTACTTGGAGGGATCCAAAGATGCTCTTCTTT...TGTGCATGTAACTCTACAGGGAATAATCATTATTGCAATCAAGGGTGACTTAAT
34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp CTAAGCAATTTTGTGGAAGAATCATGTGATCACAAAATGCCAAAGATGTCCATAATATTTCTCTTGATCTaGCTTTGTGACACTGTCATA +
Preference number: 4 (lower is better)
Translates to: LSNFVEESCDHKMPKMSIIFLLI*LCDTVI
Trigger: TATGACAGTGTCACAAAGCCAGATCAAGAGAAATAT...TATGGACATCTTTGGCATTTTGTGATCACATGATTCTTCCACAAAATTGCTTAG
34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CCA 90 bp AGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAAAGTAGCCATATATTTCTCTTGATCTaGCTTTGTGACACTGTCATA +
Preference number: 4 (lower is better)
Translates to: RVTCTILKESLTNAKSSHIFLLI*LCDTVI
Trigger: TATGACAGTGTCACAAAGCCAGATCAAGAGAAATAT...ATGGCTACTTTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCT
34% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp GTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCAAGTACCAGCGACACCACGCCATaGCAGTCCACTGCACTGTGC +
Preference number: 5 (lower is better)
Translates to: VHTVLQSSAQTSAKVSSTSDTTP*QSTALC
Trigger: GCACAGTGCAGTGGACTGCAATGGCGTGGTGTCGCT...GGTACTTGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp GATGCAGTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCAAGCGACACCACGCCATaGCAGTCCACTGCACTGTGC +
Preference number: 5 (lower is better)
Translates to: DAVHTVLQSSAQTSAKVSSDTTP*QSTALC
Trigger: GCACAGTGCAGTGGACTGCAATGGCGTGGTGTCGCT...TGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGACTGCATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS GCA 90 bp TGTAAAACAGGCTTCGGGCTCATCTGCATTGATAGGCTCAGCTTCTaGCTCCTCTTCTCCTGGCAGAGGGTTATCAACTGTGCTGCACTC +
Preference number: 5 (lower is better)
Translates to: CKTGFGLICIDRLSF*LLFSWQRVINCAAL
Trigger: GAGTGCAGCACAGTTGATAACCCTCTGCCAGGAGAAGAGGAGGCAGAAGCTGAGCCTATCAATGCAGATGAGCCCGAAGCCTGTTTTACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS GCA 90 bp AAATCTCCTCACACAGCCATCTGTAAAACAGGCTTCGGGCTCATCTaGATTGATAGGCTCAGCTTCTGCCTCCTCTTCTCCTGGCAGAGG +
Preference number: 5 (lower is better)
Translates to: KSPHTAICKTGFGLI*IDRLSFCLLFSWQR
Trigger: CCTCTGCCAGGAGAAGAGGAGGCAGAAGCTGAGCCTATCAATGCAGATGAGCCCGAAGCCTGTTTTACAGATGGCTGTGTGAGGAGATTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp GCTGTTCTCTGTGATGTGTGCCTGAAGTTCCAGCTAAGCAATTTTGTGGAAGAAAGCGACACCACGCCATaGCAGTCCACTGCACTGTGC +
Preference number: 5 (lower is better)
Translates to: AVLCDVCLKFQLSNFVEESDTTP*QSTALC
Trigger: GCACAGTGCAGTGGACTGCAATGGCGTGGTGTCGCT...TTCTTCCACAAAATTGCTTAGCTGGAACTTCAGGCACACATCACAGAGAACAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS CCA 90 bp CCACCAAACTTTCCCTTTCCCGGAGTCTATGTTAACTTGGCAGCATaGAAATCTCCTCACACAGCCATCTGTAAAACAGGCTTCGGGCTC +
Preference number: 5 (lower is better)
Translates to: PPNFPFPGVYVNLAA*KSPHTAICKTGFGL
Trigger: GAGCCCGAAGCCTGTTTTACAGATGGCTGTGTGAGGAGATTTCCATGCTGCCAAGTTAACATAGACTCCGGGAAAGGGAAAGTTTGGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp CCAACGCAAAAAGTAGCCATGTGTAAATGCTTCTCTCTTGTTTCACTGGATCAGAGCGACACCACGCCATaGCAGTCCACTGCACTGTGC +
Preference number: 5 (lower is better)
Translates to: PTQKVAMCKCFSLVSLDQSDTTP*QSTALC
Trigger: GCACAGTGCAGTGGACTGCAATGGCGTGGTGTCGCT...CTGATCCAGTGAAACAAGAGAGAAGCATTTACACATGGCTACTTTTTGCGTTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp ACATTAAGGATTGTATTTAAGAGATGCAGTCCACACTGTGCTCCAGTCATCTGCAGCGACACCACGCCATaGCAGTCCACTGCACTGTGC +
Preference number: 5 (lower is better)
Translates to: TLRIVFKRCSPHCAPVICSDTTP*QSTALC
Trigger: GCACAGTGCAGTGGACTGCAATGGCGTGGTGTCGCT...GCAGATGACTGGAGCACAGTGTGGACTGCATCTCTTAAATACAATCCTTAATGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS CCA 90 bp CGGATGGTCCACCAAACTTTCCCTTTCCCGGAGTCTATGTTAACTTaGCAGCATGGAAATCTCCTCACACAGCCATCTGTAAAACAGGCT +
Preference number: 5 (lower is better)
Translates to: RMVHQTFPFPESMLT*QHGNLLTQPSVKQA
Trigger: AGCCTGTTTTACAGATGGCTGTGTGAGGAGATTTCCATGCTGCCAAGTTAACATAGACTCCGGGAAAGGGAAAGTTTGGTGGACCATCCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp GTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCAAGTACCAAAGCAGGGGTGGCGTaGAAACGGAAGATTGCTTTC +
Preference number: 5 (lower is better)
Translates to: VHTVLQSSAQTSAKVSSTKAGVA*KRKIAF
Trigger: GAAAGCAATCTTCCGTTTCAACGCCACCCCTGCTTT...GGTACTTGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp GTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCAAGTACCTCCTCTGACCCTGACTaGGACAGCTTCTCATCATCA +
Preference number: 5 (lower is better)
Translates to: VHTVLQSSAQTSAKVSSTSSDPD*DSFSSS
Trigger: TGATGATGAGAAGCTGTCCAAGTCAGGGTCAGAGGA...GGTACTTGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp CCAACGCAAAAAGTAGCCATGTGTAAATGCTTCTCTCTTGTTTCACTGGATCAGGGAAGAAGCTGTCCATaGGGGAGCATGAGGGCTGAG +
Preference number: 5 (lower is better)
Translates to: PTQKVAMCKCFSLVSLDQGRSCP*GSMRAE
Trigger: CTCAGCCCTCATGCTCCCCAATGGACAGCTTCTTCC...CTGATCCAGTGAAACAAGAGAGAAGCATTTACACATGGCTACTTTTTGCGTTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp GCTGTTCTCTGTGATGTGTGCCTGAAGTTCCAGCTAAGCAATTTTGTGGAAGAACGGTTTCTTCTCTCCTaGGCACTCTTTGAGCTCAGC +
Preference number: 5 (lower is better)
Translates to: AVLCDVCLKFQLSNFVEERFLLS*ALFELS
Trigger: GCTGAGCTCAAAGAGTGCCAAGGAGAGAAGAAACCG...TTCTTCCACAAAATTGCTTAGCTGGAACTTCAGGCACACATCACAGAGAACAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp GATGCAGTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCAGTTCGTTTTGTGTCCTaGGAGCCCTTTGGCTTTTTG +
Preference number: 5 (lower is better)
Translates to: DAVHTVLQSSAQTSAKVSVRFVS*EPFGFL
Trigger: CAAAAAGCCAAAGGGCTCCAAGGACACAAAACGAAC...TGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGACTGCATC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp GTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCAAGTACCGTTCGTTTTGTGTCCTaGGAGCCCTTTGGCTTTTTG +
Preference number: 5 (lower is better)
Translates to: VHTVLQSSAQTSAKVSSTVRFVS*EPFGFL
Trigger: CAAAAAGCCAAAGGGCTCCAAGGACACAAAACGAAC...GGTACTTGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp GTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCAAGTACCTCTTCCTGCTCTTTTTaGAGTCGGTCTAACATCTGC +
Preference number: 5 (lower is better)
Translates to: VHTVLQSSAQTSAKVSSTSSCSF*SRSNIC
Trigger: GCAGATGTTAGACCGACTCAAAAAAGAGCAGGAAGA...GGTACTTGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp CCAACGCAAAAAGTAGCCATGTGTAAATGCTTCTCTCTTGTTTCACTGGATCAGCGGTTTCTTCTCTCCTaGGCACTCTTTGAGCTCAGC +
Preference number: 5 (lower is better)
Translates to: PTQKVAMCKCFSLVSLDQRFLLS*ALFELS
Trigger: GCTGAGCTCAAAGAGTGCCAAGGAGAGAAGAAACCG...CTGATCCAGTGAAACAAGAGAGAAGCATTTACACATGGCTACTTTTTGCGTTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp GCTGTTCTCTGTGATGTGTGCCTGAAGTTCCAGCTAAGCAATTTTGTGGAAGAATCCTCTGACCCTGACTaGGACAGCTTCTCATCATCA +
Preference number: 5 (lower is better)
Translates to: AVLCDVCLKFQLSNFVEESSDPD*DSFSSS
Trigger: TGATGATGAGAAGCTGTCCAAGTCAGGGTCAGAGGA...TTCTTCCACAAAATTGCTTAGCTGGAACTTCAGGCACACATCACAGAGAACAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp GCTGTTCTCTGTGATGTGTGCCTGAAGTTCCAGCTAAGCAATTTTGTGGAAGAACCCCTTCTGCTCTCGTaGTCTCCAAAAATGCTATGC +
Preference number: 5 (lower is better)
Translates to: AVLCDVCLKFQLSNFVEEPLLLS*SPKMLC
Trigger: GCATAGCATTTTTGGAGACAACGAGAGCAGAAGGGG...TTCTTCCACAAAATTGCTTAGCTGGAACTTCAGGCACACATCACAGAGAACAGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp CCTTGGCAGGGTAACTCCAACTATCTCAAAATGCTCTATTTGACCGATAAATGCTCTGCTCATGGCCCTTaGCCTGAGATGTGGGTCATT +
Preference number: 5 (lower is better)
Translates to: PWQGNSNYLKMLYLTDKCSAHGP*PEMWVI
Trigger: AATGACCCACATCTCAGGCAAAGGGCCATGAGCAGA...GCATTTATCGGTCAAATAGAGCATTTTGAGATAGTTGGAGTTACCCTGCCAAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
CDS-3UTR CAA 90 bp ACATTAAGGATTGTATTTAAGAGATGCAGTCCACACTGTGCTCCAGTCATCTGCGATCCGCTGTTCGTTTaGTGTCCTTGGAGCCCTTTG +
Preference number: 5 (lower is better)
Translates to: TLRIVFKRCSPHCAPVICDPLFV*CPWSPL
Trigger: CAAAGGGCTCCAAGGACACAAAACGAACAGCGGATC...GCAGATGACTGGAGCACAGTGTGGACTGCATCTCTTAAATACAATCCTTAATGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp GTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCAAGTACCGGAGTCTATGTTAACTaGGCAGCATGGAAATCTCCT +
Preference number: 5 (lower is better)
Translates to: VHTVLQSSAQTSAKVSSTGVYVN*AAWKSP
Trigger: AGGAGATTTCCATGCTGCCAAGTTAACATAGACTCC...GGTACTTGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp GCTGTTCTCTGTGATGTGTGCCTGAAGTTCCAGCTAAGCAATTTTGTGGAAGAACTTGAACGTTGCAACTaGAAGCAGCGACAGGTAACC +
Preference number: 5 (lower is better)
Translates to: AVLCDVCLKFQLSNFVEELERCN*KQRQVT
Trigger: GGTTACCTGTCGCTGCTTCAAGTTGCAACGTTCAAG...TTCTTCCACAAAATTGCTTAGCTGGAACTTCAGGCACACATCACAGAGAACAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp GCTGTTCTCTGTGATGTGTGCCTGAAGTTCCAGCTAAGCAATTTTGTGGAAGAACCTCGGAATTGGTTTTaGTGGTTTCTTGGACCCCAG +
Preference number: 5 (lower is better)
Translates to: AVLCDVCLKFQLSNFVEEPRNWF*WFLGPQ
Trigger: CTGGGGTCCAAGAAACCACAAAAACCAATTCCGAGG...TTCTTCCACAAAATTGCTTAGCTGGAACTTCAGGCACACATCACAGAGAACAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp GTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCAAGTACCGTCAAATATGCATCCTaGGAATTTGTTCCCTGGCCT +
Preference number: 5 (lower is better)
Translates to: VHTVLQSSAQTSAKVSSTVKYAS*EFVPWP
Trigger: AGGCCAGGGAACAAATTCCAAGGATGCATATTTGAC...GGTACTTGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp GCTGTTCTCTGTGATGTGTGCCTGAAGTTCCAGCTAAGCAATTTTGTGGAAGAAGTCCAATCTGGAGGGTaGCTCATGGTCATGAATATG +
Preference number: 5 (lower is better)
Translates to: AVLCDVCLKFQLSNFVEEVQSGG*LMVMNM
Trigger: CATATTCATGACCATGAGCAACCCTCCAGATTGGAC...TTCTTCCACAAAATTGCTTAGCTGGAACTTCAGGCACACATCACAGAGAACAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp GAGTTTGGCATAGACCTCCGTAAAAGAGTCTTATTAACACGAGTGAGTCACCTTTCCTCTGACCCTGACTaGGACAGCTTCTCATCATCA +
Preference number: 5 (lower is better)
Translates to: EFGIDLRKRVLLTRVSHLSSDPD*DSFSSS
Trigger: TGATGATGAGAAGCTGTCCAAGTCAGGGTCAGAGGA...AAGGTGACTCACTCGTGTTAATAAGACTCTTTTACGGAGGTCTATGCCAAACTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp ACATTAAGGATTGTATTTAAGAGATGCAGTCCACACTGTGCTCCAGTCATCTGCCCCCTTCTGCTCTCGTaGTCTCCAAAAATGCTATGC +
Preference number: 5 (lower is better)
Translates to: TLRIVFKRCSPHCAPVICPLLLS*SPKMLC
Trigger: GCATAGCATTTTTGGAGACAACGAGAGCAGAAGGGG...GCAGATGACTGGAGCACAGTGTGGACTGCATCTCTTAAATACAATCCTTAATGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp GCTGTTCTCTGTGATGTGTGCCTGAAGTTCCAGCTAAGCAATTTTGTGGAAGAACAATCTGGAGGTTGTTaGCGTCGGTGTCTTCTTCAA +
Preference number: 5 (lower is better)
Translates to: AVLCDVCLKFQLSNFVEEQSGGC*RRCLLQ
Trigger: TTGAAGAAGACACCGACGCAAACAACCTCCAGATTG...TTCTTCCACAAAATTGCTTAGCTGGAACTTCAGGCACACATCACAGAGAACAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp CCTTGGCAGGGTAACTCCAACTATCTCAAAATGCTCTATTTGACCGATAAATGCACTGCAATCTGGAGGTaGTTTGCGTCGGTGTCTTCT +
Preference number: 5 (lower is better)
Translates to: PWQGNSNYLKMLYLTDKCTAIWR*FASVSS
Trigger: AGAAGACACCGACGCAAACAACCTCCAGATTGCAGT...GCATTTATCGGTCAAATAGAGCATTTTGAGATAGTTGGAGTTACCCTGCCAAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
CDS-3UTR CAA 90 bp GTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCAAGTACCCCGCAAGGGTACGGTTaGAGATATAGTTTTCTCTTT +
Preference number: 5 (lower is better)
Translates to: VHTVLQSSAQTSAKVSSTPQGYG*RYSFLF
Trigger: AAAGAGAAAACTATATCTCAAACCGTACCCTTGCGG...GGTACTTGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp CCAACGCAAAAAGTAGCCATGTGTAAATGCTTCTCTCTTGTTTCACTGGATCAGCTTGAACGTTGCAACTaGAAGCAGCGACAGGTAACC +
Preference number: 5 (lower is better)
Translates to: PTQKVAMCKCFSLVSLDQLERCN*KQRQVT
Trigger: GGTTACCTGTCGCTGCTTCAAGTTGCAACGTTCAAG...CTGATCCAGTGAAACAAGAGAGAAGCATTTACACATGGCTACTTTTTGCGTTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp GCTGTTCTCTGTGATGTGTGCCTGAAGTTCCAGCTAAGCAATTTTGTGGAAGAACGCAGATACATCCTCTaGTTTTCGCTTCAGTGTGGT +
Preference number: 5 (lower is better)
Translates to: AVLCDVCLKFQLSNFVEERRYIL*FSLQCG
Trigger: ACCACACTGAAGCGAAAACAAGAGGATGTATCTGCG...TTCTTCCACAAAATTGCTTAGCTGGAACTTCAGGCACACATCACAGAGAACAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp GTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCAAGTACCCTTTCGTCTTTCTCTTaGTCTTCCTTCTCCGTTTTG +
Preference number: 5 (lower is better)
Translates to: VHTVLQSSAQTSAKVSSTLSSFS*SSFSVL
Trigger: CAAAACGGAGAAGGAAGACAAAGAGAAAGACGAAAG...GGTACTTGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp CCTTGGCAGGGTAACTCCAACTATCTCAAAATGCTCTATTTGACCGATAAATGCGAGTCCCATAATCCTTaGTCCCACCTGCTTTGCCTT +
Preference number: 5 (lower is better)
Translates to: PWQGNSNYLKMLYLTDKCESHNP*SHLLCL
Trigger: AAGGCAAAGCAGGTGGGACAAAGGATTATGGGACTC...GCATTTATCGGTCAAATAGAGCATTTTGAGATAGTTGGAGTTACCCTGCCAAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100063.9
CDS-3UTR CAA 90 bp GCTGTTCTCTGTGATGTGTGCCTGAAGTTCCAGCTAAGCAATTTTGTGGAAGAATCTTCCTGCTCTTTTTaGAGTCGGTCTAACATCTGC +
Preference number: 5 (lower is better)
Translates to: AVLCDVCLKFQLSNFVEESSCSF*SRSNIC
Trigger: GCAGATGTTAGACCGACTCAAAAAAGAGCAGGAAGA...TTCTTCCACAAAATTGCTTAGCTGGAACTTCAGGCACACATCACAGAGAACAGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp TTCACTGGATCAGAGCTAGTGGCTGTGCTGCCTTTGAGAATATTTGATAAAAAGCCCCTTCTGCTCTCGTaGTCTCCAAAAATGCTATGC +
Preference number: 5 (lower is better)
Translates to: FTGSELVAVLPLRIFDKKPLLLS*SPKMLC
Trigger: GCATAGCATTTTTGGAGACAACGAGAGCAGAAGGGG...CTTTTTATCAAATATTCTCAAAGGCAGCACAGCCACTAGCTCTGATCCAGTGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp ATTAAGTCACCCTTGATTGCAATAATGATTATTCCCTGTAGAGTTACATGCACAGGAAGAAGCTGTCCATaGGGGAGCATGAGGGCTGAG +
Preference number: 5 (lower is better)
Translates to: IKSPLIAIMIIPCRVTCTGRSCP*GSMRAE
Trigger: CTCAGCCCTCATGCTCCCCAATGGACAGCTTCTTCC...TGTGCATGTAACTCTACAGGGAATAATCATTATTGCAATCAAGGGTGACTTAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp ATTATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAGGAAGAAGCTGTCCATaGGGGAGCATGAGGGCTGAG +
Preference number: 5 (lower is better)
Translates to: IIPCRVTCTILKESLTNAGRSCP*GSMRAE
Trigger: CTCAGCCCTCATGCTCCCCAATGGACAGCTTCTTCC...TGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAATAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp CTAAGCAATTTTGTGGAAGAATCATGTGATCACAAAATGCCAAAGATGTCCATAGGAAGAAGCTGTCCATaGGGGAGCATGAGGGCTGAG +
Preference number: 5 (lower is better)
Translates to: LSNFVEESCDHKMPKMSIGRSCP*GSMRAE
Trigger: CTCAGCCCTCATGCTCCCCAATGGACAGCTTCTTCC...TATGGACATCTTTGGCATTTTGTGATCACATGATTCTTCCACAAAATTGCTTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp CCAACGCAAAAAGTAGCCATGTGTAAATGCTTCTCTCTTGTTTCACTGGATCAGTGTTGGTTAGAATGCTaGCTCTGCTCATGGCCCTTT +
Preference number: 5 (lower is better)
Translates to: PTQKVAMCKCFSLVSLDQCWLEC*LCSWPF
Trigger: AAAGGGCCATGAGCAGAGCAAGCATTCTAACCAACA...CTGATCCAGTGAAACAAGAGAGAAGCATTTACACATGGCTACTTTTTGCGTTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp ACATTAAGGATTGTATTTAAGAGATGCAGTCCACACTGTGCTCCAGTCATCTGCTGTTGGTTAGAATGCTaGCTCTGCTCATGGCCCTTT +
Preference number: 5 (lower is better)
Translates to: TLRIVFKRCSPHCAPVICCWLEC*LCSWPF
Trigger: AAAGGGCCATGAGCAGAGCAAGCATTCTAACCAACA...GCAGATGACTGGAGCACAGTGTGGACTGCATCTCTTAAATACAATCCTTAATGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp TTCACTGGATCAGAGCTAGTGGCTGTGCTGCCTTTGAGAATATTTGATAAAAAGACTGCAATCTGGAGGTaGTTTGCGTCGGTGTCTTCT +
Preference number: 5 (lower is better)
Translates to: FTGSELVAVLPLRIFDKKTAIWR*FASVSS
Trigger: AGAAGACACCGACGCAAACAACCTCCAGATTGCAGT...CTTTTTATCAAATATTCTCAAAGGCAGCACAGCCACTAGCTCTGATCCAGTGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp GCTGTTCTCTGTGATGTGTGCCTGAAGTTCCAGCTAAGCAATTTTGTGGAAGAATGTCCTTGGAGCCCTTaGGCTTTTTGGAAAATGACT +
Preference number: 5 (lower is better)
Translates to: AVLCDVCLKFQLSNFVEECPWSP*AFWKMT
Trigger: AGTCATTTTCCAAAAAGCCAAAGGGCTCCAAGGACA...TTCTTCCACAAAATTGCTTAGCTGGAACTTCAGGCACACATCACAGAGAACAGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp GAGTTTGGCATAGACCTCCGTAAAAGAGTCTTATTAACACGAGTGAGTCACCTTGTTCGTTTTGTGTCCTaGGAGCCCTTTGGCTTTTTG +
Preference number: 5 (lower is better)
Translates to: EFGIDLRKRVLLTRVSHLVRFVS*EPFGFL
Trigger: CAAAAAGCCAAAGGGCTCCAAGGACACAAAACGAAC...AAGGTGACTCACTCGTGTTAATAAGACTCTTTTACGGAGGTCTATGCCAAACTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp GTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCAAGTACCTTTTCTCTTTTGTTGTaGGGATCCGCTGTTCGTTTT +
Preference number: 5 (lower is better)
Translates to: VHTVLQSSAQTSAKVSSTFSLLL*GSAVRF
Trigger: AAAACGAACAGCGGATCCCAACAACAAAAGAGAAAA...GGTACTTGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp GATGCAGTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCATTTTCTCTTTTGTTGTaGGGATCCGCTGTTCGTTTT +
Preference number: 5 (lower is better)
Translates to: DAVHTVLQSSAQTSAKVSFSLLL*GSAVRF
Trigger: AAAACGAACAGCGGATCCCAACAACAAAAGAGAAAA...TGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGACTGCATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp ACATTAAGGATTGTATTTAAGAGATGCAGTCCACACTGTGCTCCAGTCATCTGCTGCACTCTGAAGAACTaGATCGGTTCCGTCTCTCTT +
Preference number: 5 (lower is better)
Translates to: TLRIVFKRCSPHCAPVICCTLKN*IGSVSL
Trigger: AAGAGAGACGGAACCGATCAAGTTCTTCAGAGTGCA...GCAGATGACTGGAGCACAGTGTGGACTGCATCTCTTAAATACAATCCTTAATGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp TTCACTGGATCAGAGCTAGTGGCTGTGCTGCCTTTGAGAATATTTGATAAAAAGCTTGAACGTTGCAACTaGAAGCAGCGACAGGTAACC +
Preference number: 5 (lower is better)
Translates to: FTGSELVAVLPLRIFDKKLERCN*KQRQVT
Trigger: GGTTACCTGTCGCTGCTTCAAGTTGCAACGTTCAAG...CTTTTTATCAAATATTCTCAAAGGCAGCACAGCCACTAGCTCTGATCCAGTGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp ACATTAAGGATTGTATTTAAGAGATGCAGTCCACACTGTGCTCCAGTCATCTGCATGCATCCTTGGAATTaGTTCCCTGGCCTCGGAATT +
Preference number: 5 (lower is better)
Translates to: TLRIVFKRCSPHCAPVICMHPWN*FPGLGI
Trigger: AATTCCGAGGCCAGGGAACAAATTCCAAGGATGCAT...GCAGATGACTGGAGCACAGTGTGGACTGCATCTCTTAAATACAATCCTTAATGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp ACATTAAGGATTGTATTTAAGAGATGCAGTCCACACTGTGCTCCAGTCATCTGCCGCAGATACATCCTCTaGTTTTCGCTTCAGTGTGGT +
Preference number: 5 (lower is better)
Translates to: TLRIVFKRCSPHCAPVICRRYIL*FSLQCG
Trigger: ACCACACTGAAGCGAAAACAAGAGGATGTATCTGCG...GCAGATGACTGGAGCACAGTGTGGACTGCATCTCTTAAATACAATCCTTAATGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS TCA 90 bp CCACTAACATTCATCAGGGCAAAACACTCAGAACGGTTTGCAACTTaGGATACAGAAAATCGTGAGCCATCTGTGGTGTTAACACACTCA +
Preference number: 5 (lower is better)
Translates to: PLTFIRAKHSERFAT*DTENREPSVVLTHS
Trigger: TGAGTGTGTTAACACCACAGATGGCTCACGATTTTCTGTATCTCAAGTTGCAAACCGTTCTGAGTGTTTTGCCCTGATGAATGTTAGTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS GCA 90 bp GTTTCTGAAGAGCTCTCAGAGAGTCCCATAATCCTTTGTCCCACCTaGTTTGCCTTCGTGTTTGTAATAATAAATACTACCTCGGCTTCT +
Preference number: 5 (lower is better)
Translates to: VSEELSESPIILCPT*FAFVFVIINTTSAS
Trigger: AGAAGCCGAGGTAGTATTTATTATTACAAACACGAAGGCAAAGCAGGTGGGACAAAGGATTATGGGACTCTCTGAGAGCTCTTCAGAAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100063.9
CDS-3UTR CAA 90 bp CCTTGGCAGGGTAACTCCAACTATCTCAAAATGCTCTATTTGACCGATAAATGCTTCTTCAGAAATGCGTaGTTCAATGAGGGCAAGGGA +
Preference number: 5 (lower is better)
Translates to: PWQGNSNYLKMLYLTDKCFFRNA*FNEGKG
Trigger: TCCCTTGCCCTCATTGAACAACGCATTTCTGAAGAA...GCATTTATCGGTCAAATAGAGCATTTTGAGATAGTTGGAGTTACCCTGCCAAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
CDS-3UTR CAA 90 bp ACATTAAGGATTGTATTTAAGAGATGCAGTCCACACTGTGCTCCAGTCATCTGCTTCTTCAGAAATGCGTaGTTCAATGAGGGCAAGGGA +
Preference number: 5 (lower is better)
Translates to: TLRIVFKRCSPHCAPVICFFRNA*FNEGKG
Trigger: TCCCTTGCCCTCATTGAACAACGCATTTCTGAAGAA...GCAGATGACTGGAGCACAGTGTGGACTGCATCTCTTAAATACAATCCTTAATGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp GAGTTTGGCATAGACCTCCGTAAAAGAGTCTTATTAACACGAGTGAGTCACCTTTTCTTCAGAAATGCGTaGTTCAATGAGGGCAAGGGA +
Preference number: 5 (lower is better)
Translates to: EFGIDLRKRVLLTRVSHLFFRNA*FNEGKG
Trigger: TCCCTTGCCCTCATTGAACAACGCATTTCTGAAGAA...AAGGTGACTCACTCGTGTTAATAAGACTCTTTTACGGAGGTCTATGCCAAACTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp CCAACGCAAAAAGTAGCCATGTGTAAATGCTTCTCTCTTGTTTCACTGGATCAGTTCTTCAGAAATGCGTaGTTCAATGAGGGCAAGGGA +
Preference number: 5 (lower is better)
Translates to: PTQKVAMCKCFSLVSLDQFFRNA*FNEGKG
Trigger: TCCCTTGCCCTCATTGAACAACGCATTTCTGAAGAA...CTGATCCAGTGAAACAAGAGAGAAGCATTTACACATGGCTACTTTTTGCGTTGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp TTCACTGGATCAGAGCTAGTGGCTGTGCTGCCTTTGAGAATATTTGATAAAAAGGTCCAATCTGGAGGGTaGCTCATGGTCATGAATATG +
Preference number: 5 (lower is better)
Translates to: FTGSELVAVLPLRIFDKKVQSGG*LMVMNM
Trigger: CATATTCATGACCATGAGCAACCCTCCAGATTGGAC...CTTTTTATCAAATATTCTCAAAGGCAGCACAGCCACTAGCTCTGATCCAGTGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp TTCACTGGATCAGAGCTAGTGGCTGTGCTGCCTTTGAGAATATTTGATAAAAAGAGCACGCAGTGTCTGTaGATAAAGGTTCTCCCAGTA +
Preference number: 5 (lower is better)
Translates to: FTGSELVAVLPLRIFDKKSTQCL*IKVLPV
Trigger: TACTGGGAGAACCTTTATCAACAGACACTGCGTGCT...CTTTTTATCAAATATTCTCAAAGGCAGCACAGCCACTAGCTCTGATCCAGTGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp TTCACTGGATCAGAGCTAGTGGCTGTGCTGCCTTTGAGAATATTTGATAAAAAGCGCTGTCGTCGGAAGTaGCCTTATCTATTATCACCT +
Preference number: 5 (lower is better)
Translates to: FTGSELVAVLPLRIFDKKRCRRK*PYLLSP
Trigger: AGGTGATAATAGATAAGGCAACTTCCGACGACAGCG...CTTTTTATCAAATATTCTCAAAGGCAGCACAGCCACTAGCTCTGATCCAGTGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000100064.9
ENSMUST00000164384.9
CDS-3UTR CAA 90 bp GCTGTTCTCTGTGATGTGTGCCTGAAGTTCCAGCTAAGCAATTTTGTGGAAGAAAGTTCTTCTACTGTGTaGGTTAGAATGCTTGCTCTG +
Preference number: 5 (lower is better)
Translates to: AVLCDVCLKFQLSNFVEESSSTV*VRMLAL
Trigger: CAGAGCAAGCATTCTAACCAACACAGTAGAAGAACT...TTCTTCCACAAAATTGCTTAGCTGGAACTTCAGGCACACATCACAGAGAACAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp GTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCAAGTACCAATATTCCACCCTACTaGGAAATATTCATAGGGATC +
Preference number: 5 (lower is better)
Translates to: VHTVLQSSAQTSAKVSSTNIPPY*EIFIGI
Trigger: GATCCCTATGAATATTTCCAAGTAGGGTGGAATATT...GGTACTTGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp GCTGTTCTCTGTGATGTGTGCCTGAAGTTCCAGCTAAGCAATTTTGTGGAAGAACCGCAAGGGTACGGTTaGAGATATAGTTTTCTCTTT +
Preference number: 5 (lower is better)
Translates to: AVLCDVCLKFQLSNFVEEPQGYG*RYSFLF
Trigger: AAAGAGAAAACTATATCTCAAACCGTACCCTTGCGG...TTCTTCCACAAAATTGCTTAGCTGGAACTTCAGGCACACATCACAGAGAACAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp GATGCAGTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCATCATCCATAAAGCTTTaGTCTAGACTGCTGCTAAAA +
Preference number: 5 (lower is better)
Translates to: DAVHTVLQSSAQTSAKVSSSIKL*SRLLLK
Trigger: TTTTAGCAGCAGTCTAGACAAAAGCTTTATGGATGA...TGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGACTGCATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp TTCACTGGATCAGAGCTAGTGGCTGTGCTGCCTTTGAGAATATTTGATAAAAAGTGCACTCTGAAGAACTaGATCGGTTCCGTCTCTCTT +
Preference number: 5 (lower is better)
Translates to: FTGSELVAVLPLRIFDKKCTLKN*IGSVSL
Trigger: AAGAGAGACGGAACCGATCAAGTTCTTCAGAGTGCA...CTTTTTATCAAATATTCTCAAAGGCAGCACAGCCACTAGCTCTGATCCAGTGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp GAGTTTGGCATAGACCTCCGTAAAAGAGTCTTATTAACACGAGTGAGTCACCTTGGAGTCTATGTTAACTaGGCAGCATGGAAATCTCCT +
Preference number: 5 (lower is better)
Translates to: EFGIDLRKRVLLTRVSHLGVYVN*AAWKSP
Trigger: AGGAGATTTCCATGCTGCCAAGTTAACATAGACTCC...AAGGTGACTCACTCGTGTTAATAAGACTCTTTTACGGAGGTCTATGCCAAACTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp GTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCAAGTACCTGTCATAAAGATATCTaGACCTCCAAGCTTCTTCTT +
Preference number: 5 (lower is better)
Translates to: VHTVLQSSAQTSAKVSSTCHKDI*TSKLLL
Trigger: AAGAAGAAGCTTGGAGGTCAAGATATCTTTATGACA...GGTACTTGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp TTCACTGGATCAGAGCTAGTGGCTGTGCTGCCTTTGAGAATATTTGATAAAAAGATGCATCCTTGGAATTaGTTCCCTGGCCTCGGAATT +
Preference number: 5 (lower is better)
Translates to: FTGSELVAVLPLRIFDKKMHPWN*FPGLGI
Trigger: AATTCCGAGGCCAGGGAACAAATTCCAAGGATGCAT...CTTTTTATCAAATATTCTCAAAGGCAGCACAGCCACTAGCTCTGATCCAGTGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp ACATTAAGGATTGTATTTAAGAGATGCAGTCCACACTGTGCTCCAGTCATCTGCGTCAAATATGCATCCTaGGAATTTGTTCCCTGGCCT +
Preference number: 5 (lower is better)
Translates to: TLRIVFKRCSPHCAPVICVKYAS*EFVPWP
Trigger: AGGCCAGGGAACAAATTCCAAGGATGCATATTTGAC...GCAGATGACTGGAGCACAGTGTGGACTGCATCTCTTAAATACAATCCTTAATGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp TTCACTGGATCAGAGCTAGTGGCTGTGCTGCCTTTGAGAATATTTGATAAAAAGCGCAGATACATCCTCTaGTTTTCGCTTCAGTGTGGT +
Preference number: 5 (lower is better)
Translates to: FTGSELVAVLPLRIFDKKRRYIL*FSLQCG
Trigger: ACCACACTGAAGCGAAAACAAGAGGATGTATCTGCG...CTTTTTATCAAATATTCTCAAAGGCAGCACAGCCACTAGCTCTGATCCAGTGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp GTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCAAGTACCACTATATCTTCTTTATaGGGCAAATCGTCATCTCTG +
Preference number: 5 (lower is better)
Translates to: VHTVLQSSAQTSAKVSSTTISSL*GKSSSL
Trigger: CAGAGATGACGATTTGCCCAATAAAGAAGATATAGT...GGTACTTGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp GATGCAGTCCACACTGTGCTCCAGTCATCTGCTCAAACAAGCGCTAAAGTATCAACTATATCTTCTTTATaGGGCAAATCGTCATCTCTG +
Preference number: 5 (lower is better)
Translates to: DAVHTVLQSSAQTSAKVSTISSL*GKSSSL
Trigger: CAGAGATGACGATTTGCCCAATAAAGAAGATATAGT...TGATACTTTAGCGCTTGTTTGAGCAGATGACTGGAGCACAGTGTGGACTGCATC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp GCTGTTCTCTGTGATGTGTGCCTGAAGTTCCAGCTAAGCAATTTTGTGGAAGAATCATCTTTGTGTCCCTaGGCTTTTTCTTCAGAAATG +
Preference number: 5 (lower is better)
Translates to: AVLCDVCLKFQLSNFVEESSLCP*AFSSEM
Trigger: CATTTCTGAAGAAAAAGCCAAGGGACACAAAGATGA...TTCTTCCACAAAATTGCTTAGCTGGAACTTCAGGCACACATCACAGAGAACAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp ATTATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCACGGTTTCTTCTCTCCTaGGCACTCTTTGAGCTCAGC +
Preference number: 5 (lower is better)
Translates to: IIPCRVTCTILKESLTNARFLLS*ALFELS
Trigger: GCTGAGCTCAAAGAGTGCCAAGGAGAGAAGAAACCG...TGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAATAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp AACTGCATTTCAGGGTACATCTCATTAGAAAGGAGACATTCAATTTGCTTAGACTCCTCTGACCCTGACTaGGACAGCTTCTCATCATCA +
Preference number: 5 (lower is better)
Translates to: NCISGYISLERRHSICLDSSDPD*DSFSSS
Trigger: TGATGATGAGAAGCTGTCCAAGTCAGGGTCAGAGGA...GTCTAAGCAAATTGAATGTCTCCTTTCTAATGAGATGTACCCTGAAATGCAGTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp ATTAAGTCACCCTTGATTGCAATAATGATTATTCCCTGTAGAGTTACATGCACATCTGCTCATGGCCCTTaGCCTGAGATGTGGGTCATT +
Preference number: 5 (lower is better)
Translates to: IKSPLIAIMIIPCRVTCTSAHGP*PEMWVI
Trigger: AATGACCCACATCTCAGGCAAAGGGCCATGAGCAGA...TGTGCATGTAACTCTACAGGGAATAATCATTATTGCAATCAAGGGTGACTTAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp ATTATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCATCTGCTCATGGCCCTTaGCCTGAGATGTGGGTCATT +
Preference number: 5 (lower is better)
Translates to: IIPCRVTCTILKESLTNASAHGP*PEMWVI
Trigger: AATGACCCACATCTCAGGCAAAGGGCCATGAGCAGA...TGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAATAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp AGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAAAGTAGCCATTCTGCTCATGGCCCTTaGCCTGAGATGTGGGTCATT +
Preference number: 5 (lower is better)
Translates to: RVTCTILKESLTNAKSSHSAHGP*PEMWVI
Trigger: AATGACCCACATCTCAGGCAAAGGGCCATGAGCAGA...ATGGCTACTTTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp CCTTGGCAGGGTAACTCCAACTATCTCAAAATGCTCTATTTGACCGATAAATGCAGTTCTTCTACTGTGTaGGTTAGAATGCTTGCTCTG +
Preference number: 5 (lower is better)
Translates to: PWQGNSNYLKMLYLTDKCSSSTV*VRMLAL
Trigger: CAGAGCAAGCATTCTAACCAACACAGTAGAAGAACT...GCATTTATCGGTCAAATAGAGCATTTTGAGATAGTTGGAGTTACCCTGCCAAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
CDS-3UTR CAA 90 bp GAGTTTGGCATAGACCTCCGTAAAAGAGTCTTATTAACACGAGTGAGTCACCTTAGTTCTTCTACTGTGTaGGTTAGAATGCTTGCTCTG +
Preference number: 5 (lower is better)
Translates to: EFGIDLRKRVLLTRVSHLSSSTV*VRMLAL
Trigger: CAGAGCAAGCATTCTAACCAACACAGTAGAAGAACT...AAGGTGACTCACTCGTGTTAATAAGACTCTTTTACGGAGGTCTATGCCAAACTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp GCTGTTCTCTGTGATGTGTGCCTGAAGTTCCAGCTAAGCAATTTTGTGGAAGAAGAGCCCTTTGGCTTTTaGGAAAATGACTTTAGAATG +
Preference number: 5 (lower is better)
Translates to: AVLCDVCLKFQLSNFVEEEPFGF*ENDFRM
Trigger: CATTCTAAAGTCATTTTCCAAAAAGCCAAAGGGCTC...TTCTTCCACAAAATTGCTTAGCTGGAACTTCAGGCACACATCACAGAGAACAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp ATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAAGATCCGCTGTTCGTTTaGTGTCCTTGGAGCCCTTTG +
Preference number: 5 (lower is better)
Translates to: IPCRVTCTILKESLTNAKDPLFV*CPWSPL
Trigger: CAAAGGGCTCCAAGGACACAAAACGAACAGCGGATC...TTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp ATTAAGTCACCCTTGATTGCAATAATGATTATTCCCTGTAGAGTTACATGCACAGATCCGCTGTTCGTTTaGTGTCCTTGGAGCCCTTTG +
Preference number: 5 (lower is better)
Translates to: IKSPLIAIMIIPCRVTCTDPLFV*CPWSPL
Trigger: CAAAGGGCTCCAAGGACACAAAACGAACAGCGGATC...TGTGCATGTAACTCTACAGGGAATAATCATTATTGCAATCAAGGGTGACTTAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp GCTGTTCTCTGTGATGTGTGCCTGAAGTTCCAGCTAAGCAATTTTGTGGAAGAATTTTCTCTTTTGTTGTaGGGATCCGCTGTTCGTTTT +
Preference number: 5 (lower is better)
Translates to: AVLCDVCLKFQLSNFVEEFSLLL*GSAVRF
Trigger: AAAACGAACAGCGGATCCCAACAACAAAAGAGAAAA...TTCTTCCACAAAATTGCTTAGCTGGAACTTCAGGCACACATCACAGAGAACAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp CCTTGGCAGGGTAACTCCAACTATCTCAAAATGCTCTATTTGACCGATAAATGCCCGCAAGGGTACGGTTaGAGATATAGTTTTCTCTTT +
Preference number: 5 (lower is better)
Translates to: PWQGNSNYLKMLYLTDKCPQGYG*RYSFLF
Trigger: AAAGAGAAAACTATATCTCAAACCGTACCCTTGCGG...GCATTTATCGGTCAAATAGAGCATTTTGAGATAGTTGGAGTTACCCTGCCAAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
CDS-3UTR CAA 90 bp AACTGCATTTCAGGGTACATCTCATTAGAAAGGAGACATTCAATTTGCTTAGACCCTCGGAATTGGTTTTaGTGGTTTCTTGGACCCCAG +
Preference number: 5 (lower is better)
Translates to: NCISGYISLERRHSICLDPRNWF*WFLGPQ
Trigger: CTGGGGTCCAAGAAACCACAAAAACCAATTCCGAGG...GTCTAAGCAAATTGAATGTCTCCTTTCTAATGAGATGTACCCTGAAATGCAGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp CCAACGCAAAAAGTAGCCATGTGTAAATGCTTCTCTCTTGTTTCACTGGATCAGCTTTCGTCTTTCTCTTaGTCTTCCTTCTCCGTTTTG +
Preference number: 5 (lower is better)
Translates to: PTQKVAMCKCFSLVSLDQLSSFS*SSFSVL
Trigger: CAAAACGGAGAAGGAAGACAAAGAGAAAGACGAAAG...CTGATCCAGTGAAACAAGAGAGAAGCATTTACACATGGCTACTTTTTGCGTTGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp GAGTTTGGCATAGACCTCCGTAAAAGAGTCTTATTAACACGAGTGAGTCACCTTCTTTCGTCTTTCTCTTaGTCTTCCTTCTCCGTTTTG +
Preference number: 5 (lower is better)
Translates to: EFGIDLRKRVLLTRVSHLLSSFS*SSFSVL
Trigger: CAAAACGGAGAAGGAAGACAAAGAGAAAGACGAAAG...AAGGTGACTCACTCGTGTTAATAAGACTCTTTTACGGAGGTCTATGCCAAACTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp CTAAGCAATTTTGTGGAAGAATCATGTGATCACAAAATGCCAAAGATGTCCATAAAAGCAGGGGTGGCGTaGAAACGGAAGATTGCTTTC +
Preference number: 5 (lower is better)
Translates to: LSNFVEESCDHKMPKMSIKAGVA*KRKIAF
Trigger: GAAAGCAATCTTCCGTTTCAACGCCACCCCTGCTTT...TATGGACATCTTTGGCATTTTGTGATCACATGATTCTTCCACAAAATTGCTTAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp AGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAAAGTAGCCATAAAGCAGGGGTGGCGTaGAAACGGAAGATTGCTTTC +
Preference number: 5 (lower is better)
Translates to: RVTCTILKESLTNAKSSHKAGVA*KRKIAF
Trigger: GAAAGCAATCTTCCGTTTCAACGCCACCCCTGCTTT...ATGGCTACTTTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp ATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAAAAAGCAGGGGTGGCGTaGAAACGGAAGATTGCTTTC +
Preference number: 5 (lower is better)
Translates to: IPCRVTCTILKESLTNAKKAGVA*KRKIAF
Trigger: GAAAGCAATCTTCCGTTTCAACGCCACCCCTGCTTT...TTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAAT
41% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp AACTGCATTTCAGGGTACATCTCATTAGAAAGGAGACATTCAATTTGCTTAGACGTCCAATCTGGAGGGTaGCTCATGGTCATGAATATG +
Preference number: 5 (lower is better)
Translates to: NCISGYISLERRHSICLDVQSGG*LMVMNM
Trigger: CATATTCATGACCATGAGCAACCCTCCAGATTGGAC...GTCTAAGCAAATTGAATGTCTCCTTTCTAATGAGATGTACCCTGAAATGCAGTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp CTAAGCAATTTTGTGGAAGAATCATGTGATCACAAAATGCCAAAGATGTCCATATCCTCTGACCCTGACTaGGACAGCTTCTCATCATCA +
Preference number: 5 (lower is better)
Translates to: LSNFVEESCDHKMPKMSISSDPD*DSFSSS
Trigger: TGATGATGAGAAGCTGTCCAAGTCAGGGTCAGAGGA...TATGGACATCTTTGGCATTTTGTGATCACATGATTCTTCCACAAAATTGCTTAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp AGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAAAGTAGCCATCCCCTTCTGCTCTCGTaGTCTCCAAAAATGCTATGC +
Preference number: 5 (lower is better)
Translates to: RVTCTILKESLTNAKSSHPLLLS*SPKMLC
Trigger: GCATAGCATTTTTGGAGACAACGAGAGCAGAAGGGG...ATGGCTACTTTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp CTAAGCAATTTTGTGGAAGAATCATGTGATCACAAAATGCCAAAGATGTCCATACCCCTTCTGCTCTCGTaGTCTCCAAAAATGCTATGC +
Preference number: 5 (lower is better)
Translates to: LSNFVEESCDHKMPKMSIPLLLS*SPKMLC
Trigger: GCATAGCATTTTTGGAGACAACGAGAGCAGAAGGGG...TATGGACATCTTTGGCATTTTGTGATCACATGATTCTTCCACAAAATTGCTTAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp TTCACTGGATCAGAGCTAGTGGCTGTGCTGCCTTTGAGAATATTTGATAAAAAGAGTTCTTCTACTGTGTaGGTTAGAATGCTTGCTCTG +
Preference number: 5 (lower is better)
Translates to: FTGSELVAVLPLRIFDKKSSSTV*VRMLAL
Trigger: CAGAGCAAGCATTCTAACCAACACAGTAGAAGAACT...CTTTTTATCAAATATTCTCAAAGGCAGCACAGCCACTAGCTCTGATCCAGTGAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp GCTGTTCTCTGTGATGTGTGCCTGAAGTTCCAGCTAAGCAATTTTGTGGAAGAATCAATTGCTGTAAGATaGTCAGAACTAAAGGAACTC +
Preference number: 5 (lower is better)
Translates to: AVLCDVCLKFQLSNFVEESIAVR*SELKEL
Trigger: GAGTTCCTTTAGTTCTGACAATCTTACAGCAATTGA...TTCTTCCACAAAATTGCTTAGCTGGAACTTCAGGCACACATCACAGAGAACAGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp AACTGCATTTCAGGGTACATCTCATTAGAAAGGAGACATTCAATTTGCTTAGACCAATCTGGAGGTTGTTaGCGTCGGTGTCTTCTTCAA +
Preference number: 5 (lower is better)
Translates to: NCISGYISLERRHSICLDQSGGC*RRCLLQ
Trigger: TTGAAGAAGACACCGACGCAAACAACCTCCAGATTG...GTCTAAGCAAATTGAATGTCTCCTTTCTAATGAGATGTACCCTGAAATGCAGTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp ATTATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAACTGCAATCTGGAGGTaGTTTGCGTCGGTGTCTTCT +
Preference number: 5 (lower is better)
Translates to: IIPCRVTCTILKESLTNATAIWR*FASVSS
Trigger: AGAAGACACCGACGCAAACAACCTCCAGATTGCAGT...TGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAATAAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp ACATTAAGGATTGTATTTAAGAGATGCAGTCCACACTGTGCTCCAGTCATCTGCGAGCCCTTTGGCTTTTaGGAAAATGACTTTAGAATG +
Preference number: 5 (lower is better)
Translates to: TLRIVFKRCSPHCAPVICEPFGF*ENDFRM
Trigger: CATTCTAAAGTCATTTTCCAAAAAGCCAAAGGGCTC...GCAGATGACTGGAGCACAGTGTGGACTGCATCTCTTAAATACAATCCTTAATGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp AACTGCATTTCAGGGTACATCTCATTAGAAAGGAGACATTCAATTTGCTTAGACGTTCGTTTTGTGTCCTaGGAGCCCTTTGGCTTTTTG +
Preference number: 5 (lower is better)
Translates to: NCISGYISLERRHSICLDVRFVS*EPFGFL
Trigger: CAAAAAGCCAAAGGGCTCCAAGGACACAAAACGAAC...GTCTAAGCAAATTGAATGTCTCCTTTCTAATGAGATGTACCCTGAAATGCAGTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp AGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAAAGTAGCCATCTTGAACGTTGCAACTaGAAGCAGCGACAGGTAACC +
Preference number: 5 (lower is better)
Translates to: RVTCTILKESLTNAKSSHLERCN*KQRQVT
Trigger: GGTTACCTGTCGCTGCTTCAAGTTGCAACGTTCAAG...ATGGCTACTTTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp ATTAAGTCACCCTTGATTGCAATAATGATTATTCCCTGTAGAGTTACATGCACACTTGAACGTTGCAACTaGAAGCAGCGACAGGTAACC +
Preference number: 5 (lower is better)
Translates to: IKSPLIAIMIIPCRVTCTLERCN*KQRQVT
Trigger: GGTTACCTGTCGCTGCTTCAAGTTGCAACGTTCAAG...TGTGCATGTAACTCTACAGGGAATAATCATTATTGCAATCAAGGGTGACTTAAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp CTAAGCAATTTTGTGGAAGAATCATGTGATCACAAAATGCCAAAGATGTCCATACCTCGGAATTGGTTTTaGTGGTTTCTTGGACCCCAG +
Preference number: 5 (lower is better)
Translates to: LSNFVEESCDHKMPKMSIPRNWF*WFLGPQ
Trigger: CTGGGGTCCAAGAAACCACAAAAACCAATTCCGAGG...TATGGACATCTTTGGCATTTTGTGATCACATGATTCTTCCACAAAATTGCTTAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp AGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAAAGTAGCCATCCTCGGAATTGGTTTTaGTGGTTTCTTGGACCCCAG +
Preference number: 5 (lower is better)
Translates to: RVTCTILKESLTNAKSSHPRNWF*WFLGPQ
Trigger: CTGGGGTCCAAGAAACCACAAAAACCAATTCCGAGG...ATGGCTACTTTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp ATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAACCTCGGAATTGGTTTTaGTGGTTTCTTGGACCCCAG +
Preference number: 5 (lower is better)
Translates to: IPCRVTCTILKESLTNAKPRNWF*WFLGPQ
Trigger: CTGGGGTCCAAGAAACCACAAAAACCAATTCCGAGG...TTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp CCTTGGCAGGGTAACTCCAACTATCTCAAAATGCTCTATTTGACCGATAAATGCATCATGGTTACCATATaGAGGCAGATAAGAACCATG +
Preference number: 5 (lower is better)
Translates to: PWQGNSNYLKMLYLTDKCIMVTI*RQIRTM
Trigger: CATGGTTCTTATCTGCCTCAATATGGTAACCATGAT...GCATTTATCGGTCAAATAGAGCATTTTGAGATAGTTGGAGTTACCCTGCCAAGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
CDS-3UTR CAA 90 bp GAGTTTGGCATAGACCTCCGTAAAAGAGTCTTATTAACACGAGTGAGTCACCTTATCATGGTTACCATATaGAGGCAGATAAGAACCATG +
Preference number: 5 (lower is better)
Translates to: EFGIDLRKRVLLTRVSHLIMVTI*RQIRTM
Trigger: CATGGTTCTTATCTGCCTCAATATGGTAACCATGAT...AAGGTGACTCACTCGTGTTAATAAGACTCTTTTACGGAGGTCTATGCCAAACTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp ACATTAAGGATTGTATTTAAGAGATGCAGTCCACACTGTGCTCCAGTCATCTGCATCATGGTTACCATATaGAGGCAGATAAGAACCATG +
Preference number: 5 (lower is better)
Translates to: TLRIVFKRCSPHCAPVICIMVTI*RQIRTM
Trigger: CATGGTTCTTATCTGCCTCAATATGGTAACCATGAT...GCAGATGACTGGAGCACAGTGTGGACTGCATCTCTTAAATACAATCCTTAATGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp ACATTAAGGATTGTATTTAAGAGATGCAGTCCACACTGTGCTCCAGTCATCTGCATACTTGATATATTCTaGACGTTTTGCCTAAGGCGG +
Preference number: 5 (lower is better)
Translates to: TLRIVFKRCSPHCAPVICILDIF*TFCLRR
Trigger: CCGCCTTAGGCAAAACGTCAAGAATATATCAAGTAT...GCAGATGACTGGAGCACAGTGTGGACTGCATCTCTTAAATACAATCCTTAATGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp GCTGTTCTCTGTGATGTGTGCCTGAAGTTCCAGCTAAGCAATTTTGTGGAAGAAACTATATCTTCTTTATaGGGCAAATCGTCATCTCTG +
Preference number: 5 (lower is better)
Translates to: AVLCDVCLKFQLSNFVEETISSL*GKSSSL
Trigger: CAGAGATGACGATTTGCCCAATAAAGAAGATATAGT...TTCTTCCACAAAATTGCTTAGCTGGAACTTCAGGCACACATCACAGAGAACAGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp CCTTGGCAGGGTAACTCCAACTATCTCAAAATGCTCTATTTGACCGATAAATGCTTTCTCTGGTACCCTTaGTGCCCATTTTCTAATGTT +
Preference number: 5 (lower is better)
Translates to: PWQGNSNYLKMLYLTDKCFLWYP*CPFSNV
Trigger: AACATTAGAAAATGGGCACAAAGGGTACCAGAGAAA...GCATTTATCGGTCAAATAGAGCATTTTGAGATAGTTGGAGTTACCCTGCCAAGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100063.9
CDS-3UTR CAA 90 bp ATTAAGTCACCCTTGATTGCAATAATGATTATTCCCTGTAGAGTTACATGCACAGTCCAATCTGGAGGGTaGCTCATGGTCATGAATATG +
Preference number: 5 (lower is better)
Translates to: IKSPLIAIMIIPCRVTCTVQSGG*LMVMNM
Trigger: CATATTCATGACCATGAGCAACCCTCCAGATTGGAC...TGTGCATGTAACTCTACAGGGAATAATCATTATTGCAATCAAGGGTGACTTAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp ACATTAAGGATTGTATTTAAGAGATGCAGTCCACACTGTGCTCCAGTCATCTGCCATTTATGCTTCAAGTaGCCCATAAACAGTTGTAGT +
Preference number: 5 (lower is better)
Translates to: TLRIVFKRCSPHCAPVICHLCFK*PINSCS
Trigger: ACTACAACTGTTTATGGGCAACTTGAAGCATAAATG...GCAGATGACTGGAGCACAGTGTGGACTGCATCTCTTAAATACAATCCTTAATGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp CCAACGCAAAAAGTAGCCATGTGTAAATGCTTCTCTCTTGTTTCACTGGATCAGCATTTATGCTTCAAGTaGCCCATAAACAGTTGTAGT +
Preference number: 5 (lower is better)
Translates to: PTQKVAMCKCFSLVSLDQHLCFK*PINSCS
Trigger: ACTACAACTGTTTATGGGCAACTTGAAGCATAAATG...CTGATCCAGTGAAACAAGAGAGAAGCATTTACACATGGCTACTTTTTGCGTTGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp ATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAAAGCACGCAGTGTCTGTaGATAAAGGTTCTCCCAGTA +
Preference number: 5 (lower is better)
Translates to: IPCRVTCTILKESLTNAKSTQCL*IKVLPV
Trigger: TACTGGGAGAACCTTTATCAACAGACACTGCGTGCT...TTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp AGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAAAGTAGCCATAGCACGCAGTGTCTGTaGATAAAGGTTCTCCCAGTA +
Preference number: 5 (lower is better)
Translates to: RVTCTILKESLTNAKSSHSTQCL*IKVLPV
Trigger: TACTGGGAGAACCTTTATCAACAGACACTGCGTGCT...ATGGCTACTTTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp CTAAGCAATTTTGTGGAAGAATCATGTGATCACAAAATGCCAAAGATGTCCATAAGCACGCAGTGTCTGTaGATAAAGGTTCTCCCAGTA +
Preference number: 5 (lower is better)
Translates to: LSNFVEESCDHKMPKMSISTQCL*IKVLPV
Trigger: TACTGGGAGAACCTTTATCAACAGACACTGCGTGCT...TATGGACATCTTTGGCATTTTGTGATCACATGATTCTTCCACAAAATTGCTTAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp AACTGCATTTCAGGGTACATCTCATTAGAAAGGAGACATTCAATTTGCTTAGACTCTTCCTGCTCTTTTTaGAGTCGGTCTAACATCTGC +
Preference number: 5 (lower is better)
Translates to: NCISGYISLERRHSICLDSSCSF*SRSNIC
Trigger: GCAGATGTTAGACCGACTCAAAAAAGAGCAGGAAGA...GTCTAAGCAAATTGAATGTCTCCTTTCTAATGAGATGTACCCTGAAATGCAGTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp TTGCAAATCACAGGTGAAATATTTACATCGAATTCCAAATCACAGCTAATCCTGCGCTGTCGTCGGAAGTaGCCTTATCTATTATCACCT +
Preference number: 5 (lower is better)
Translates to: LQITGEIFTSNSKSQLILRCRRK*PYLLSP
Trigger: AGGTGATAATAGATAAGGCAACTTCCGACGACAGCG...CAGGATTAGCTGTGATTTGGAATTCGATGTAAATATTTCACCTGTGATTTGCAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100064.9
ENSMUST00000164384.9
CDS-3UTR CAA 90 bp ATTAAGTCACCCTTGATTGCAATAATGATTATTCCCTGTAGAGTTACATGCACATGTTGGTTAGAATGCTaGCTCTGCTCATGGCCCTTT +
Preference number: 5 (lower is better)
Translates to: IKSPLIAIMIIPCRVTCTCWLEC*LCSWPF
Trigger: AAAGGGCCATGAGCAGAGCAAGCATTCTAACCAACA...TGTGCATGTAACTCTACAGGGAATAATCATTATTGCAATCAAGGGTGACTTAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp AGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAAAGTAGCCATTGTTGGTTAGAATGCTaGCTCTGCTCATGGCCCTTT +
Preference number: 5 (lower is better)
Translates to: RVTCTILKESLTNAKSSHCWLEC*LCSWPF
Trigger: AAAGGGCCATGAGCAGAGCAAGCATTCTAACCAACA...ATGGCTACTTTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp CTAAGCAATTTTGTGGAAGAATCATGTGATCACAAAATGCCAAAGATGTCCATATGTTGGTTAGAATGCTaGCTCTGCTCATGGCCCTTT +
Preference number: 5 (lower is better)
Translates to: LSNFVEESCDHKMPKMSICWLEC*LCSWPF
Trigger: AAAGGGCCATGAGCAGAGCAAGCATTCTAACCAACA...TATGGACATCTTTGGCATTTTGTGATCACATGATTCTTCCACAAAATTGCTTAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp ACATTAAGGATTGTATTTAAGAGATGCAGTCCACACTGTGCTCCAGTCATCTGCACTGCAAGTACATTTTaGAATTCATCCGTCATTGGA +
Preference number: 5 (lower is better)
Translates to: TLRIVFKRCSPHCAPVICTASTF*NSSVIG
Trigger: TCCAATGACGGATGAATTCAAAAATGTACTTGCAGT...GCAGATGACTGGAGCACAGTGTGGACTGCATCTCTTAAATACAATCCTTAATGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp CCAACGCAAAAAGTAGCCATGTGTAAATGCTTCTCTCTTGTTTCACTGGATCAGACTGCAAGTACATTTTaGAATTCATCCGTCATTGGA +
Preference number: 5 (lower is better)
Translates to: PTQKVAMCKCFSLVSLDQTASTF*NSSVIG
Trigger: TCCAATGACGGATGAATTCAAAAATGTACTTGCAGT...CTGATCCAGTGAAACAAGAGAGAAGCATTTACACATGGCTACTTTTTGCGTTGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp CCTTGGCAGGGTAACTCCAACTATCTCAAAATGCTCTATTTGACCGATAAATGCAATATTCCACCCTACTaGGAAATATTCATAGGGATC +
Preference number: 5 (lower is better)
Translates to: PWQGNSNYLKMLYLTDKCNIPPY*EIFIGI
Trigger: GATCCCTATGAATATTTCCAAGTAGGGTGGAATATT...GCATTTATCGGTCAAATAGAGCATTTTGAGATAGTTGGAGTTACCCTGCCAAGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
CDS-3UTR CAA 90 bp GAGTTTGGCATAGACCTCCGTAAAAGAGTCTTATTAACACGAGTGAGTCACCTTAATATTCCACCCTACTaGGAAATATTCATAGGGATC +
Preference number: 5 (lower is better)
Translates to: EFGIDLRKRVLLTRVSHLNIPPY*EIFIGI
Trigger: GATCCCTATGAATATTTCCAAGTAGGGTGGAATATT...AAGGTGACTCACTCGTGTTAATAAGACTCTTTTACGGAGGTCTATGCCAAACTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp ACATTAAGGATTGTATTTAAGAGATGCAGTCCACACTGTGCTCCAGTCATCTGCTCAATTGCTGTAAGATaGTCAGAACTAAAGGAACTC +
Preference number: 5 (lower is better)
Translates to: TLRIVFKRCSPHCAPVICSIAVR*SELKEL
Trigger: GAGTTCCTTTAGTTCTGACAATCTTACAGCAATTGA...GCAGATGACTGGAGCACAGTGTGGACTGCATCTCTTAAATACAATCCTTAATGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp CCAACGCAAAAAGTAGCCATGTGTAAATGCTTCTCTCTTGTTTCACTGGATCAGTCAATTGCTGTAAGATaGTCAGAACTAAAGGAACTC +
Preference number: 5 (lower is better)
Translates to: PTQKVAMCKCFSLVSLDQSIAVR*SELKEL
Trigger: GAGTTCCTTTAGTTCTGACAATCTTACAGCAATTGA...CTGATCCAGTGAAACAAGAGAGAAGCATTTACACATGGCTACTTTTTGCGTTGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp ATTAAGTCACCCTTGATTGCAATAATGATTATTCCCTGTAGAGTTACATGCACACAATCTGGAGGTTGTTaGCGTCGGTGTCTTCTTCAA +
Preference number: 5 (lower is better)
Translates to: IKSPLIAIMIIPCRVTCTQSGGC*RRCLLQ
Trigger: TTGAAGAAGACACCGACGCAAACAACCTCCAGATTG...TGTGCATGTAACTCTACAGGGAATAATCATTATTGCAATCAAGGGTGACTTAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp ATTATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCACAATCTGGAGGTTGTTaGCGTCGGTGTCTTCTTCAA +
Preference number: 5 (lower is better)
Translates to: IIPCRVTCTILKESLTNAQSGGC*RRCLLQ
Trigger: TTGAAGAAGACACCGACGCAAACAACCTCCAGATTG...TGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAATAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp TTCACTGGATCAGAGCTAGTGGCTGTGCTGCCTTTGAGAATATTTGATAAAAAGGAGCCCTTTGGCTTTTaGGAAAATGACTTTAGAATG +
Preference number: 5 (lower is better)
Translates to: FTGSELVAVLPLRIFDKKEPFGF*ENDFRM
Trigger: CATTCTAAAGTCATTTTCCAAAAAGCCAAAGGGCTC...CTTTTTATCAAATATTCTCAAAGGCAGCACAGCCACTAGCTCTGATCCAGTGAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp AACTGCATTTCAGGGTACATCTCATTAGAAAGGAGACATTCAATTTGCTTAGACTGTCCTTGGAGCCCTTaGGCTTTTTGGAAAATGACT +
Preference number: 5 (lower is better)
Translates to: NCISGYISLERRHSICLDCPWSP*AFWKMT
Trigger: AGTCATTTTCCAAAAAGCCAAAGGGCTCCAAGGACA...GTCTAAGCAAATTGAATGTCTCCTTTCTAATGAGATGTACCCTGAAATGCAGTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp CTAAGCAATTTTGTGGAAGAATCATGTGATCACAAAATGCCAAAGATGTCCATAGTTCGTTTTGTGTCCTaGGAGCCCTTTGGCTTTTTG +
Preference number: 5 (lower is better)
Translates to: LSNFVEESCDHKMPKMSIVRFVS*EPFGFL
Trigger: CAAAAAGCCAAAGGGCTCCAAGGACACAAAACGAAC...TATGGACATCTTTGGCATTTTGTGATCACATGATTCTTCCACAAAATTGCTTAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp TTGCAAATCACAGGTGAAATATTTACATCGAATTCCAAATCACAGCTAATCCTGTGCACTCTGAAGAACTaGATCGGTTCCGTCTCTCTT +
Preference number: 5 (lower is better)
Translates to: LQITGEIFTSNSKSQLILCTLKN*IGSVSL
Trigger: AAGAGAGACGGAACCGATCAAGTTCTTCAGAGTGCA...CAGGATTAGCTGTGATTTGGAATTCGATGTAAATATTTCACCTGTGATTTGCAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp ATTATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCATGCACTCTGAAGAACTaGATCGGTTCCGTCTCTCTT +
Preference number: 5 (lower is better)
Translates to: IIPCRVTCTILKESLTNACTLKN*IGSVSL
Trigger: AAGAGAGACGGAACCGATCAAGTTCTTCAGAGTGCA...TGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAATAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp TTGCAAATCACAGGTGAAATATTTACATCGAATTCCAAATCACAGCTAATCCTGATGCATCCTTGGAATTaGTTCCCTGGCCTCGGAATT +
Preference number: 5 (lower is better)
Translates to: LQITGEIFTSNSKSQLILMHPWN*FPGLGI
Trigger: AATTCCGAGGCCAGGGAACAAATTCCAAGGATGCAT...CAGGATTAGCTGTGATTTGGAATTCGATGTAAATATTTCACCTGTGATTTGCAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp ATTAAGTCACCCTTGATTGCAATAATGATTATTCCCTGTAGAGTTACATGCACAATGCATCCTTGGAATTaGTTCCCTGGCCTCGGAATT +
Preference number: 5 (lower is better)
Translates to: IKSPLIAIMIIPCRVTCTMHPWN*FPGLGI
Trigger: AATTCCGAGGCCAGGGAACAAATTCCAAGGATGCAT...TGTGCATGTAACTCTACAGGGAATAATCATTATTGCAATCAAGGGTGACTTAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp ATTATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCACGCAGATACATCCTCTaGTTTTCGCTTCAGTGTGGT +
Preference number: 5 (lower is better)
Translates to: IIPCRVTCTILKESLTNARRYIL*FSLQCG
Trigger: ACCACACTGAAGCGAAAACAAGAGGATGTATCTGCG...TGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAATAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp TTCACTGGATCAGAGCTAGTGGCTGTGCTGCCTTTGAGAATATTTGATAAAAAGATACTTGATATATTCTaGACGTTTTGCCTAAGGCGG +
Preference number: 5 (lower is better)
Translates to: FTGSELVAVLPLRIFDKKILDIF*TFCLRR
Trigger: CCGCCTTAGGCAAAACGTCAAGAATATATCAAGTAT...CTTTTTATCAAATATTCTCAAAGGCAGCACAGCCACTAGCTCTGATCCAGTGAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp ATTATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCATCTTCCTGCTCTTTTTaGAGTCGGTCTAACATCTGC +
Preference number: 5 (lower is better)
Translates to: IIPCRVTCTILKESLTNASSCSF*SRSNIC
Trigger: GCAGATGTTAGACCGACTCAAAAAAGAGCAGGAAGA...TGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAATAAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp ATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAATCTTCCTGCTCTTTTTaGAGTCGGTCTAACATCTGC +
Preference number: 5 (lower is better)
Translates to: IPCRVTCTILKESLTNAKSSCSF*SRSNIC
Trigger: GCAGATGTTAGACCGACTCAAAAAAGAGCAGGAAGA...TTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp AGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAAAGTAGCCATTGTCCTTGGAGCCCTTaGGCTTTTTGGAAAATGACT +
Preference number: 5 (lower is better)
Translates to: RVTCTILKESLTNAKSSHCPWSP*AFWKMT
Trigger: AGTCATTTTCCAAAAAGCCAAAGGGCTCCAAGGACA...ATGGCTACTTTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp ATTATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCATGTCCTTGGAGCCCTTaGGCTTTTTGGAAAATGACT +
Preference number: 5 (lower is better)
Translates to: IIPCRVTCTILKESLTNACPWSP*AFWKMT
Trigger: AGTCATTTTCCAAAAAGCCAAAGGGCTCCAAGGACA...TGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAATAAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp TTCACTGGATCAGAGCTAGTGGCTGTGCTGCCTTTGAGAATATTTGATAAAAAGTCATCCATAAAGCTTTaGTCTAGACTGCTGCTAAAA +
Preference number: 5 (lower is better)
Translates to: FTGSELVAVLPLRIFDKKSSIKL*SRLLLK
Trigger: TTTTAGCAGCAGTCTAGACAAAAGCTTTATGGATGA...CTTTTTATCAAATATTCTCAAAGGCAGCACAGCCACTAGCTCTGATCCAGTGAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp AGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAAAGTAGCCATGGAGTCTATGTTAACTaGGCAGCATGGAAATCTCCT +
Preference number: 5 (lower is better)
Translates to: RVTCTILKESLTNAKSSHGVYVN*AAWKSP
Trigger: AGGAGATTTCCATGCTGCCAAGTTAACATAGACTCC...ATGGCTACTTTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp ATTAAGTCACCCTTGATTGCAATAATGATTATTCCCTGTAGAGTTACATGCACAGGAGTCTATGTTAACTaGGCAGCATGGAAATCTCCT +
Preference number: 5 (lower is better)
Translates to: IKSPLIAIMIIPCRVTCTGVYVN*AAWKSP
Trigger: AGGAGATTTCCATGCTGCCAAGTTAACATAGACTCC...TGTGCATGTAACTCTACAGGGAATAATCATTATTGCAATCAAGGGTGACTTAAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp ATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAAGGAGTCTATGTTAACTaGGCAGCATGGAAATCTCCT +
Preference number: 5 (lower is better)
Translates to: IPCRVTCTILKESLTNAKGVYVN*AAWKSP
Trigger: AGGAGATTTCCATGCTGCCAAGTTAACATAGACTCC...TTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp ATTATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAGTCAAATATGCATCCTaGGAATTTGTTCCCTGGCCT +
Preference number: 5 (lower is better)
Translates to: IIPCRVTCTILKESLTNAVKYAS*EFVPWP
Trigger: AGGCCAGGGAACAAATTCCAAGGATGCATATTTGAC...TGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAATAAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp TTGCAAATCACAGGTGAAATATTTACATCGAATTCCAAATCACAGCTAATCCTGGTCAAATATGCATCCTaGGAATTTGTTCCCTGGCCT +
Preference number: 5 (lower is better)
Translates to: LQITGEIFTSNSKSQLILVKYAS*EFVPWP
Trigger: AGGCCAGGGAACAAATTCCAAGGATGCATATTTGAC...CAGGATTAGCTGTGATTTGGAATTCGATGTAAATATTTCACCTGTGATTTGCAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp TTCACTGGATCAGAGCTAGTGGCTGTGCTGCCTTTGAGAATATTTGATAAAAAGTGTTTCATATTTCTCTaGATCTGGCTTTGTGACACT +
Preference number: 5 (lower is better)
Translates to: FTGSELVAVLPLRIFDKKCFIFL*IWLCDT
Trigger: AGTGTCACAAAGCCAGATCAAGAGAAATATGAAACA...CTTTTTATCAAATATTCTCAAAGGCAGCACAGCCACTAGCTCTGATCCAGTGAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp TTGCAAATCACAGGTGAAATATTTACATCGAATTCCAAATCACAGCTAATCCTGAGTTCTTCTACTGTGTaGGTTAGAATGCTTGCTCTG +
Preference number: 5 (lower is better)
Translates to: LQITGEIFTSNSKSQLILSSSTV*VRMLAL
Trigger: CAGAGCAAGCATTCTAACCAACACAGTAGAAGAACT...CAGGATTAGCTGTGATTTGGAATTCGATGTAAATATTTCACCTGTGATTTGCAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp ATTATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCACCGCAAGGGTACGGTTaGAGATATAGTTTTCTCTTT +
Preference number: 5 (lower is better)
Translates to: IIPCRVTCTILKESLTNAPQGYG*RYSFLF
Trigger: AAAGAGAAAACTATATCTCAAACCGTACCCTTGCGG...TGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAATAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp ATTATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCACTTTCGTCTTTCTCTTaGTCTTCCTTCTCCGTTTTG +
Preference number: 5 (lower is better)
Translates to: IIPCRVTCTILKESLTNALSSFS*SSFSVL
Trigger: CAAAACGGAGAAGGAAGACAAAGAGAAAGACGAAAG...TGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAATAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp AACTGCATTTCAGGGTACATCTCATTAGAAAGGAGACATTCAATTTGCTTAGACCATTTATGCTTCAAGTaGCCCATAAACAGTTGTAGT +
Preference number: 5 (lower is better)
Translates to: NCISGYISLERRHSICLDHLCFK*PINSCS
Trigger: ACTACAACTGTTTATGGGCAACTTGAAGCATAAATG...GTCTAAGCAAATTGAATGTCTCCTTTCTAATGAGATGTACCCTGAAATGCAGTT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp AACTGCATTTCAGGGTACATCTCATTAGAAAGGAGACATTCAATTTGCTTAGACACTGCAAGTACATTTTaGAATTCATCCGTCATTGGA +
Preference number: 5 (lower is better)
Translates to: NCISGYISLERRHSICLDTASTF*NSSVIG
Trigger: TCCAATGACGGATGAATTCAAAAATGTACTTGCAGT...GTCTAAGCAAATTGAATGTCTCCTTTCTAATGAGATGTACCCTGAAATGCAGTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp ATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAAGAGCCCTTTGGCTTTTaGGAAAATGACTTTAGAATG +
Preference number: 5 (lower is better)
Translates to: IPCRVTCTILKESLTNAKEPFGF*ENDFRM
Trigger: CATTCTAAAGTCATTTTCCAAAAAGCCAAAGGGCTC...TTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp ATTATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAGAGCCCTTTGGCTTTTaGGAAAATGACTTTAGAATG +
Preference number: 5 (lower is better)
Translates to: IIPCRVTCTILKESLTNAEPFGF*ENDFRM
Trigger: CATTCTAAAGTCATTTTCCAAAAAGCCAAAGGGCTC...TGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAATAAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp AGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAAAGTAGCCATTTTTCTCTTTTGTTGTaGGGATCCGCTGTTCGTTTT +
Preference number: 5 (lower is better)
Translates to: RVTCTILKESLTNAKSSHFSLLL*GSAVRF
Trigger: AAAACGAACAGCGGATCCCAACAACAAAAGAGAAAA...ATGGCTACTTTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp ATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAATTTTCTCTTTTGTTGTaGGGATCCGCTGTTCGTTTT +
Preference number: 5 (lower is better)
Translates to: IPCRVTCTILKESLTNAKFSLLL*GSAVRF
Trigger: AAAACGAACAGCGGATCCCAACAACAAAAGAGAAAA...TTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp ATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAAATCATGGTTACCATATaGAGGCAGATAAGAACCATG +
Preference number: 5 (lower is better)
Translates to: IPCRVTCTILKESLTNAKIMVTI*RQIRTM
Trigger: CATGGTTCTTATCTGCCTCAATATGGTAACCATGAT...TTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAAT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp ATTATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAATCATGGTTACCATATaGAGGCAGATAAGAACCATG +
Preference number: 5 (lower is better)
Translates to: IIPCRVTCTILKESLTNAIMVTI*RQIRTM
Trigger: CATGGTTCTTATCTGCCTCAATATGGTAACCATGAT...TGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAATAAT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp ATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAAATACTTGATATATTCTaGACGTTTTGCCTAAGGCGG +
Preference number: 5 (lower is better)
Translates to: IPCRVTCTILKESLTNAKILDIF*TFCLRR
Trigger: CCGCCTTAGGCAAAACGTCAAGAATATATCAAGTAT...TTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAAT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp ATTATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAATACTTGATATATTCTaGACGTTTTGCCTAAGGCGG +
Preference number: 5 (lower is better)
Translates to: IIPCRVTCTILKESLTNAILDIF*TFCLRR
Trigger: CCGCCTTAGGCAAAACGTCAAGAATATATCAAGTAT...TGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAATAAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp AACTGCATTTCAGGGTACATCTCATTAGAAAGGAGACATTCAATTTGCTTAGACTGTTTCATATTTCTCTaGATCTGGCTTTGTGACACT +
Preference number: 5 (lower is better)
Translates to: NCISGYISLERRHSICLDCFIFL*IWLCDT
Trigger: AGTGTCACAAAGCCAGATCAAGAGAAATATGAAACA...GTCTAAGCAAATTGAATGTCTCCTTTCTAATGAGATGTACCCTGAAATGCAGTT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp ATTAAGTCACCCTTGATTGCAATAATGATTATTCCCTGTAGAGTTACATGCACACATTTATGCTTCAAGTaGCCCATAAACAGTTGTAGT +
Preference number: 5 (lower is better)
Translates to: IKSPLIAIMIIPCRVTCTHLCFK*PINSCS
Trigger: ACTACAACTGTTTATGGGCAACTTGAAGCATAAATG...TGTGCATGTAACTCTACAGGGAATAATCATTATTGCAATCAAGGGTGACTTAAT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp ATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAACATTTATGCTTCAAGTaGCCCATAAACAGTTGTAGT +
Preference number: 5 (lower is better)
Translates to: IPCRVTCTILKESLTNAKHLCFK*PINSCS
Trigger: ACTACAACTGTTTATGGGCAACTTGAAGCATAAATG...TTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp CTAAGCAATTTTGTGGAAGAATCATGTGATCACAAAATGCCAAAGATGTCCATAACTGCAAGTACATTTTaGAATTCATCCGTCATTGGA +
Preference number: 5 (lower is better)
Translates to: LSNFVEESCDHKMPKMSITASTF*NSSVIG
Trigger: TCCAATGACGGATGAATTCAAAAATGTACTTGCAGT...TATGGACATCTTTGGCATTTTGTGATCACATGATTCTTCCACAAAATTGCTTAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp ATTAAGTCACCCTTGATTGCAATAATGATTATTCCCTGTAGAGTTACATGCACAAATATTCCACCCTACTaGGAAATATTCATAGGGATC +
Preference number: 5 (lower is better)
Translates to: IKSPLIAIMIIPCRVTCTNIPPY*EIFIGI
Trigger: GATCCCTATGAATATTTCCAAGTAGGGTGGAATATT...TGTGCATGTAACTCTACAGGGAATAATCATTATTGCAATCAAGGGTGACTTAAT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp ATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAATCAATTGCTGTAAGATaGTCAGAACTAAAGGAACTC +
Preference number: 5 (lower is better)
Translates to: IPCRVTCTILKESLTNAKSIAVR*SELKEL
Trigger: GAGTTCCTTTAGTTCTGACAATCTTACAGCAATTGA...TTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp TTGCAAATCACAGGTGAAATATTTACATCGAATTCCAAATCACAGCTAATCCTGTCAATTGCTGTAAGATaGTCAGAACTAAAGGAACTC +
Preference number: 5 (lower is better)
Translates to: LQITGEIFTSNSKSQLILSIAVR*SELKEL
Trigger: GAGTTCCTTTAGTTCTGACAATCTTACAGCAATTGA...CAGGATTAGCTGTGATTTGGAATTCGATGTAAATATTTCACCTGTGATTTGCAA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp ATTATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCATCATCCATAAAGCTTTaGTCTAGACTGCTGCTAAAA +
Preference number: 5 (lower is better)
Translates to: IIPCRVTCTILKESLTNASSIKL*SRLLLK
Trigger: TTTTAGCAGCAGTCTAGACAAAAGCTTTATGGATGA...TGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAATAAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp AGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAAAGTAGCCATTCATCCATAAAGCTTTaGTCTAGACTGCTGCTAAAA +
Preference number: 5 (lower is better)
Translates to: RVTCTILKESLTNAKSSHSSIKL*SRLLLK
Trigger: TTTTAGCAGCAGTCTAGACAAAAGCTTTATGGATGA...ATGGCTACTTTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp CTAAGCAATTTTGTGGAAGAATCATGTGATCACAAAATGCCAAAGATGTCCATATCATCCATAAAGCTTTaGTCTAGACTGCTGCTAAAA +
Preference number: 5 (lower is better)
Translates to: LSNFVEESCDHKMPKMSISSIKL*SRLLLK
Trigger: TTTTAGCAGCAGTCTAGACAAAAGCTTTATGGATGA...TATGGACATCTTTGGCATTTTGTGATCACATGATTCTTCCACAAAATTGCTTAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp AGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAAAAAGTAGCCATTGTCATAAAGATATCTaGACCTCCAAGCTTCTTCTT +
Preference number: 5 (lower is better)
Translates to: RVTCTILKESLTNAKSSHCHKDI*TSKLLL
Trigger: AAGAAGAAGCTTGGAGGTCAAGATATCTTTATGACA...ATGGCTACTTTTTGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp ATTAAGTCACCCTTGATTGCAATAATGATTATTCCCTGTAGAGTTACATGCACATGTCATAAAGATATCTaGACCTCCAAGCTTCTTCTT +
Preference number: 5 (lower is better)
Translates to: IKSPLIAIMIIPCRVTCTCHKDI*TSKLLL
Trigger: AAGAAGAAGCTTGGAGGTCAAGATATCTTTATGACA...TGTGCATGTAACTCTACAGGGAATAATCATTATTGCAATCAAGGGTGACTTAAT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp TTGCAAATCACAGGTGAAATATTTACATCGAATTCCAAATCACAGCTAATCCTGTGTCATAAAGATATCTaGACCTCCAAGCTTCTTCTT +
Preference number: 5 (lower is better)
Translates to: LQITGEIFTSNSKSQLILCHKDI*TSKLLL
Trigger: AAGAAGAAGCTTGGAGGTCAAGATATCTTTATGACA...CAGGATTAGCTGTGATTTGGAATTCGATGTAAATATTTCACCTGTGATTTGCAA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp ATTATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCAACTATATCTTCTTTATaGGGCAAATCGTCATCTCTG +
Preference number: 5 (lower is better)
Translates to: IIPCRVTCTILKESLTNATISSL*GKSSSL
Trigger: CAGAGATGACGATTTGCCCAATAAAGAAGATATAGT...TGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAATAAT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp ATTAAGTCACCCTTGATTGCAATAATGATTATTCCCTGTAGAGTTACATGCACATGTTTCATATTTCTCTaGATCTGGCTTTGTGACACT +
Preference number: 5 (lower is better)
Translates to: IKSPLIAIMIIPCRVTCTCFIFL*IWLCDT
Trigger: AGTGTCACAAAGCCAGATCAAGAGAAATATGAAACA...TGTGCATGTAACTCTACAGGGAATAATCATTATTGCAATCAAGGGTGACTTAAT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS-3UTR CAA 90 bp ATTATTCCCTGTAGAGTTACATGCACAATTCTTAAAGAATCATTGACCAACGCATGTTTCATATTTCTCTaGATCTGGCTTTGTGACACT +
Preference number: 5 (lower is better)
Translates to: IIPCRVTCTILKESLTNACFIFL*IWLCDT
Trigger: AGTGTCACAAAGCCAGATCAAGAGAAATATGAAACA...TGCGTTGGTCAATGATTCTTTAAGAATTGTGCATGTAACTCTACAGGGAATAAT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS TCA 72 bp TCACCGGCAGCACTGGTGGGGACCTACTGGCCTGGCTaGTGTTACTGCTGCGCCGCTCCCGGGGTCTATGGG +
Preference number: 6 (lower is better)
Translates to: SPAALVGTYWPG*CYCCAAPGVYG
Trigger: CCCATAGACCCCGGGAGCGGCGCAGCAGTAACATCAGCCAGGCCAGTAGGTCCCCACCAGTGCTGCCGGTGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS CCA 72 bp CCGTTCACCGGCAGCACTGGTGGGGACCTACTGGCCTaGCTGATGTTACTGCTGCGCCGCTCCCGGGGTCTA +
Preference number: 6 (lower is better)
Translates to: PFTGSTGGDLLA*LMLLLRRSRGL
Trigger: TAGACCCCGGGAGCGGCGCAGCAGTAACATCAGCCAGGCCAGTAGGTCCCCACCAGTGCTGCCGGTGAACGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS CCA 72 bp GTGGTGACTGGTTGGGGGTGGACAGCCTCTTTTCCCTaGCCCGGTGGTGCCCTTCCACGCCGAGATGGAAGC +
Preference number: 6 (lower is better)
Translates to: VVTGWGWTASFP*PGGALPRRDGS
Trigger: GCTTCCATCTCGGCGTGGAAGGGCACCACCGGGCCAGGGAAAAGAGGCTGTCCACCCCCAACCAGTCACCAC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS CCA 72 bp CACTGCACTGTGCATCTTCCCGTTCACCGGCAGCACTaGTGGGGACCTACTGGCCTGGCTGATGTTACTGCT +
Preference number: 6 (lower is better)
Translates to: HCTVHLPVHRQH*WGPTGLADVTA
Trigger: AGCAGTAACATCAGCCAGGCCAGTAGGTCCCCACCAGTGCTGCCGGTGAACGGGAAGATGCACAGTGCAGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS TCA 72 bp CTCTGGAAGAAGCTGTCCATTGGGGAGCATGAGGGCTaGGGGTCCATCAACAAGCGACACCACGCCATTGCA +
Preference number: 6 (lower is better)
Translates to: LWKKLSIGEHEG*GSINKRHHAIA
Trigger: TGCAATGGCGTGGTGTCGCTTGTTGATGGACCCTCAGCCCTCATGCTCCCCAATGGACAGCTTCTTCCAGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS CCA 72 bp TGGCTGATGTTACTGCTGCGCCGCTCCCGGGGTCTATaGGGTACAAATAGTGAACCCCTTCTGCTCTCGTTG +
Preference number: 6 (lower is better)
Translates to: WLMLLLRRSRGL*GTNSEPLLLSL
Trigger: CAACGAGAGCAGAAGGGGTTCACTATTTGTACCCCATAGACCCCGGGAGCGGCGCAGCAGTAACATCAGCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS CAA 72 bp CAGCCATCTGTAAAACAGGCTTCGGGCTCATCTGCATaGATAGGCTCAGCTTCTGCCTCCTCTTCTCCTGGC +
Preference number: 6 (lower is better)
Translates to: QPSVKQASGSSA*IGSASASSSPG
Trigger: GCCAGGAGAAGAGGAGGCAGAAGCTGAGCCTATCAATGCAGATGAGCCCGAAGCCTGTTTTACAGATGGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS CAA 90 bp CTCCTCACACAGCCATCTGTAAAACAGGCTTCGGGCTCATCTGCATaGATAGGCTCAGCTTCTGCCTCCTCTTCTCCTGGCAGAGGGTTA +
Preference number: 6 (lower is better)
Translates to: LLTQPSVKQASGSSA*IGSASASSSPGRGL
Trigger: TAACCCTCTGCCAGGAGAAGAGGAGGCAGAAGCTGAGCCTATCAATGCAGATGAGCCCGAAGCCTGTTTTACAGATGGCTGTGTGAGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS GCA 72 bp CTGCCTCCTCTTCTCCTGGCAGAGGGTTATCAACTGTaGTGCACTCTGAAGAACTTGATCGGTTCCGTCTCT +
Preference number: 6 (lower is better)
Translates to: LPPLLLAEGYQL*CTLKNLIGSVS
Trigger: AGAGACGGAACCGATCAAGTTCTTCAGAGTGCAGCACAGTTGATAACCCTCTGCCAGGAGAAGAGGAGGCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS GCA 72 bp CCTCCTCTTCTCCTGGCAGAGGGTTATCAACTGTGCTaGACTCTGAAGAACTTGATCGGTTCCGTCTCTCTT +
Preference number: 6 (lower is better)
Translates to: PPLLLAEGYQLC*TLKNLIGSVSL
Trigger: AAGAGAGACGGAACCGATCAAGTTCTTCAGAGTGCAGCACAGTTGATAACCCTCTGCCAGGAGAAGAGGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS CAA 90 bp CCGGATGGTCCACCAAACTTTCCCTTTCCCGGAGTCTATGTTAACTaGGCAGCATGGAAATCTCCTCACACAGCCATCTGTAAAACAGGC +
Preference number: 6 (lower is better)
Translates to: PDGPPNFPFPGVYVN*AAWKSPHTAICKTG
Trigger: GCCTGTTTTACAGATGGCTGTGTGAGGAGATTTCCATGCTGCCAAGTTAACATAGACTCCGGGAAAGGGAAAGTTTGGTGGACCATCCGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS CAA 90 bp CTTCTCCTGGCAGAGGGTTATCAACTGTGCTGCACTCTGAAGAACTaGATCGGTTCCGTCTCTCTTTGCTGTAGTCACTATCTGAGTCAC +
Preference number: 6 (lower is better)
Translates to: LLLAEGYQLCCTLKN*IGSVSLCCSHYLSH
Trigger: GTGACTCAGATAGTGACTACAGCAAAGAGAGACGGAACCGATCAAGTTCTTCAGAGTGCAGCACAGTTGATAACCCTCTGCCAGGAGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS CAA 72 bp CCACCAAACTTTCCCTTTCCCGGAGTCTATGTTAACTaGGCAGCATGGAAATCTCCTCACACAGCCATCTGT +
Preference number: 6 (lower is better)
Translates to: PPNFPFPGVYVN*AAWKSPHTAIC
Trigger: ACAGATGGCTGTGTGAGGAGATTTCCATGCTGCCAAGTTAACATAGACTCCGGGAAAGGGAAAGTTTGGTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS CCA 72 bp TTTCCCTTTCCCGGAGTCTATGTTAACTTGGCAGCATaGAAATCTCCTCACACAGCCATCTGTAAAACAGGC +
Preference number: 6 (lower is better)
Translates to: FPFPGVYVNLAA*KSPHTAICKTG
Trigger: GCCTGTTTTACAGATGGCTGTGTGAGGAGATTTCCATGCTGCCAAGTTAACATAGACTCCGGGAAAGGGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS CCA 72 bp CACCAAACTTTCCCTTTCCCGGAGTCTATGTTAACTTaGCAGCATGGAAATCTCCTCACACAGCCATCTGTA +
Preference number: 6 (lower is better)
Translates to: HQTFPFPESMLT*QHGNLLTQPSV
Trigger: TACAGATGGCTGTGTGAGGAGATTTCCATGCTGCCAAGTTAACATAGACTCCGGGAAAGGGAAAGTTTGGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS GCA 72 bp CTCAGAGAGTCCCATAATCCTTTGTCCCACCTGCTTTaGCTTCGTGTTTGTAATAATAAATACTACCTCGGC +
Preference number: 6 (lower is better)
Translates to: LRESHNPLSHLL*LRVCNNKYYLG
Trigger: GCCGAGGTAGTATTTATTATTACAAACACGAAGGCAAAGCAGGTGGGACAAAGGATTATGGGACTCTCTGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100063.9
CDS CAA 72 bp ATCCCTCTTTTAATTCTGGCCACTGCAATCTGGAGGTaGTTTGCGTCGGTGTCTTCTTCAATTGCTGTAAGA +
Preference number: 6 (lower is better)
Translates to: IPLLILATAIWR*FASVSSSIAVR
Trigger: TCTTACAGCAATTGAAGAAGACACCGACGCAAACAACCTCCAGATTGCAGTGGCCAGAATTAAAAGAGGGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS TCA 72 bp TTCATCAGGGCAAAACACTCAGAACGGTTTGCAACTTaGGATACAGAAAATCGTGAGCCATCTGTGGTGTTA +
Preference number: 6 (lower is better)
Translates to: FIRAKHSERFAT*DTENREPSVVL
Trigger: TAACACCACAGATGGCTCACGATTTTCTGTATCTCAAGTTGCAAACCGTTCTGAGTGTTTTGCCCTGATGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS GCA 72 bp GAGCTCTCAGAGAGTCCCATAATCCTTTGTCCCACCTaGTTTGCCTTCGTGTTTGTAATAATAAATACTACC +
Preference number: 6 (lower is better)
Translates to: ELSESPIILCPT*FAFVFVIINTT
Trigger: GGTAGTATTTATTATTACAAACACGAAGGCAAAGCAGGTGGGACAAAGGATTATGGGACTCTCTGAGAGCTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100063.9
CDS TCA 72 bp CTCAGAACGGTTTGCAACTTGAGATACAGAAAATCGTaGGCCATCTGTGGTGTTAACACACTCATAGAACTT +
Preference number: 6 (lower is better)
Translates to: LRTVCNLRYRKS*AICGVNTLIEL
Trigger: AAGTTCTATGAGTGTGTTAACACCACAGATGGCTCACGATTTTCTGTATCTCAAGTTGCAAACCGTTCTGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS GCA 72 bp TGGTACCCTTTGTGCCCATTTTCTAATGTTTCATTCTaGTCAAGGTCCTTCCGGAAACATTTATGCTTCAAG +
Preference number: 6 (lower is better)
Translates to: WYPLCPFSNVSF*SRSFRKHLCFK
Trigger: CTTGAAGCATAAATGTTTCCGGAAGGACCTTGAGCAGAATGAAACATTAGAAAATGGGCACAAAGGGTACCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100063.9
CDS CAA 72 bp TGGTTTGTCACTAAGTCAAATATGCATCCTTGGAATTaGTTCCCTGGCCTCGGAATTGGTTTTTGTGGTTTC +
Preference number: 6 (lower is better)
Translates to: WFVTKSNMHPWN*FPGLGIGFCGF
Trigger: GAAACCACAAAAACCAATTCCGAGGCCAGGGAACAAATTCCAAGGATGCATATTTGACTTAGTGACAAACCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS GCA 72 bp ATAGTTTTCACCTTACACTTTCTCTGGTACCCTTTGTaGCCATTTTCTAATGTTTCATTCTGCTCAAGGTCC +
Preference number: 6 (lower is better)
Translates to: IVFTLHFLWYPL*PFSNVSFCSRS
Trigger: GGACCTTGAGCAGAATGAAACATTAGAAAATGGGCACAAAGGGTACCAGAGAAAGTGTAAGGTGAAAACTAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100063.9
CDS CAA 72 bp AATTGTGATCTTTGCTTATCTCCGCAAGGGTACGGTTaGAGATATAGTTTTCTCTTTTGTTGTTGGGATCCG +
Preference number: 6 (lower is better)
Translates to: NCDLCLSPQGYG*RYSFLFCCWDP
Trigger: CGGATCCCAACAACAAAAGAGAAAACTATATCTCAAACCGTACCCTTGCGGAGATAAGCAAAGATCACAATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8
CDS TCA 72 bp GATGGTAGAGGCTGTTGCATCTGTCTTTTCTGGACTTaGGTTCTCGTTAACATTATCAAAAACTATATCTTC +
Preference number: 6 (lower is better)
Translates to: DGRGCCICLFWT*VLVNIIKNYIF
Trigger: GAAGATATAGTTTTTGATAATGTTAACGAGAACTCAAGTCCAGAAAAGACAGATGCAACAGCCTCTACCATC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000100063.9
ENSMUST00000100064.9
ENSMUST00000112354.3
ENSMUST00000164384.9
ENSMUST00000169900.8