RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SCN8A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000023033

Ensembl transcript IDs: ENSMUST00000082209.13, ENSMUST00000096198.10, ENSMUST00000108908.6, ENSMUST00000108909.9, ENSMUST00000108910.10, ENSMUST00000200959.2, ENSMUST00000200963.4, ENSMUST00000201438.4, ENSMUST00000201518.4, ENSMUST00000201549.4, ENSMUST00000202702.2

Found 1020 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp ATAATGGGAGTGGATGGAAGGCAGGGCCAGCACGAGCTGGTGGACTaGAAGCTGCCGGGCAGCGTGCTTGCGCTAGCCTTGGGAGGTGGG +
Preference number: 1 (lower is better)
Translates to: IMGVDGRQGQHELVD*KLPGSVLALALGGG
Trigger: CCCACCTCCCAAGGCTAGCGCAAGCACGCTGCCCGGCAGCTTCCAGTCCACCAGCTCGTGCTGGCCCTGCCTTCCATCCACTCCCATTAT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR CCA 90 bp GGATCATGGAGTGGGACAGAGAGAGCGAGGCGGGCAGAGAGTGGCTaGGTGGACAGATGGAAGGTGAGGGGCATTGCTGGGAGAGGTCTG +
Preference number: 1 (lower is better)
Translates to: GSWSGTERARRAESG*VDRWKVRGIAGRGL
Trigger: CAGACCTCTCCCAGCAATGCCCCTCACCTTCCATCTGTCCACCCAGCCACTCTCTGCCCGCCTCGCTCTCTCTGTCCCACTCCATGATCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR GCA 90 bp GATGGAATGAGAGCCGCATGCCCGGCAAGCAAGGTCCGAGACGTCTaGCTCAGGACCAAAGGGCCATTCCAGAGAATTCTTCTCAGGGGG +
Preference number: 1 (lower is better)
Translates to: DGMRAACPASKVRDV*LRTKGPFQRILLRG
Trigger: CCCCCTGAGAAGAATTCTCTGGAATGGCCCTTTGGTCCTGAGGCAGACGTCTCGGACCTTGCTTGCCGGGCATGCGGCTCTCATTCCATC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201438.4
3UTR CCA 90 bp GACACTGCTTTTTCCACTCTGCCATTCTGGCAGGCAGTCGTGGGTTaGAAGAGAAGGTGGAGGGACCGGTTAGACAGCTCAGGAGCCCAC +
Preference number: 1 (lower is better)
Translates to: DTAFSTLPFWQAVVG*KRRWRDRLDSSGAH
Trigger: GTGGGCTCCTGAGCTGTCTAACCGGTCCCTCCACCTTCTCTTCCAACCCACGACTGCCTGCCAGAATGGCAGAGTGGAAAAAGCAGTGTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000096198.10
ENSMUST00000200959.2
3UTR GCA 90 bp ACTCTATGTCGCTTCAGGGGCCCTGAGGGGGAGCTTGTCTCTCTGTaGGCAGCTTCAGATGCCCAAGTGGCTCATTTCCAGATGGTGAGA +
Preference number: 1 (lower is better)
Translates to: TLCRFRGPEGELVSL*AASDAQVAHFQMVR
Trigger: TCTCACCATCTGGAAATGAGCCACTTGGGCATCTGAAGCTGCGCACAGAGAGACAAGCTCCCCCTCAGGGCCCCTGAAGCGACATAGAGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR TCA 90 bp GAGGGATATGGCAGAAGCAGGAAGAACCGTGCAGCCAGGAGCTTGTaGCAACCCCTCTGCAGGACAGGGCAGTTCAGAATATCTGAACCC +
Preference number: 1 (lower is better)
Translates to: EGYGRSRKNRAARSL*QPLCRTGQFRISEP
Trigger: GGGTTCAGATATTCTGAACTGCCCTGTCCTGCAGAGGGGTTGTCACAAGCTCCTGGCTGCACGGTTCTTCCTGCTTCTGCCATATCCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR CCA 90 bp CCACAGGCTCCTATGGGCTGGCACTATTGGGACGTGTGGCCTTGTTaGAGGAAGTGTGTCACAGGGACAGGCTTTGAGGTCTCAGATGTA +
Preference number: 1 (lower is better)
Translates to: PQAPMGWHYWDVWPC*RKCVTGTGFEVSDV
Trigger: TACATCTGAGACCTCAAAGCCTGTCCCTGTGACACACTTCCTCCAACAAGGCCACACGTCCCAATAGTGCCAGCCCATAGGAGCCTGTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096198.10
3UTR GCA 90 bp CAGCCGGTATGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTaGAGGGCTGGGTCCTGTCCGAAGGCTGAGCCAATGCGAGGGACA +
Preference number: 1 (lower is better)
Translates to: QPVWNSYHFSKYSEQ*RAGSCPKAEPMRGT
Trigger: TGTCCCTCGCATTGGCTCAGCCTTCGGACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCATACCGGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
3UTR CCA 90 bp GGTTCGATGCCTGTTAACTGCGGGTGTGAACTGCTGGTGATGGTGTaGTTCACAAGAAAGGATCATGGAGTGGGACAGAGAGAGCGAGGC +
Preference number: 1 (lower is better)
Translates to: GSMPVNCGCELLVMV*FTRKDHGVGQRERG
Trigger: GCCTCGCTCTCTCTGTCCCACTCCATGATCCTTTCTTGTGAACCACACCATCACCAGCAGTTCACACCCGCAGTTAACAGGCATCGAACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR TCA 90 bp AATATTTGGAATTGGCCTGAGCAAGTCCTCCTCAGCCTGAAACCCTaGTTGTTTCCCCCACCGTCTCCAAACCATGTGCCACCCACGTGG +
Preference number: 1 (lower is better)
Translates to: NIWNWPEQVLLSLKP*LFPPPSPNHVPPTW
Trigger: CCACGTGGGTGGCACATGGTTTGGAGACGGTGGGGGAAACAATCAGGGTTTCAGGCTGAGGAGGACTTGCTCAGGCCAATTCCAAATATT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
3UTR GCA 90 bp CAGGACCAAAGGGCCATTCCAGAGAATTCTTCTCAGGGGGAAGCATaGAGAGCGAGACAAGGCATATCAGATGTGCCGATCCCAGGTTCA +
Preference number: 1 (lower is better)
Translates to: QDQRAIPENSSQGEA*RARQGISDVPIPGS
Trigger: TGAACCTGGGATCGGCACATCTGATATGCCTTGTCTCGCTCTGCATGCTTCCCCCTGAGAAGAATTCTCTGGAATGGCCCTTTGGTCCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000201438.4
3UTR CCA 90 bp ACAGGTCAGCTCCTGTTTTGTGCTGTTTGCGATGTTGCCTGCAGGTaGCGCTCTAGAATTGTCCTAGCTGTGGTGACACGGACACACTCT +
Preference number: 1 (lower is better)
Translates to: TGQLLFCAVCDVACR*RSRIVLAVVTRTHS
Trigger: AGAGTGTGTCCGTGTCACCACAGCTAGGACAATTCTAGAGCGCCACCTGCAGGCAACATCGCAAACAGCACAAAACAGGAGCTGACCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR TCA 90 bp ACGAGCACAATATTTGGAATTGGCCTGAGCAAGTCCTCCTCAGCCTaGAACCCTGATTGTTTCCCCCACCGTCTCCAAACCATGTGCCAC +
Preference number: 1 (lower is better)
Translates to: TSTIFGIGLSKSSSA*NPDCFPHRLQTMCH
Trigger: GTGGCACATGGTTTGGAGACGGTGGGGGAAACAATCAGGGTTTCAGGCTGAGGAGGACTTGCTCAGGCCAATTCCAAATATTGTGCTCGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
3UTR GCA 90 bp ATAACCACAGGTCAGCTCCTGTTTTGTGCTGTTTGCGATGTTGCCTaGAGGTGGCGCTCTAGAATTGTCCTAGCTGTGGTGACACGGACA +
Preference number: 1 (lower is better)
Translates to: ITTGQLLFCAVCDVA*RWRSRIVLAVVTRT
Trigger: TGTCCGTGTCACCACAGCTAGGACAATTCTAGAGCGCCACCTGCAGGCAACATCGCAAACAGCACAAAACAGGAGCTGACCTGTGGTTAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR GCA 90 bp CTTTGGGCAACATCTGAGAAAAGAAAGAGGCATCGTTCCAGAAGATaGCCAGGGTTCAGGTCACCATGTCCGGACCCATGGCAATTTCAC +
Preference number: 1 (lower is better)
Translates to: LWATSEKRKRHRSRR*PGFRSPCPDPWQFH
Trigger: GTGAAATTGCCATGGGTCCGGACATGGTGACCTGAACCCTGGGCATCTTCTGGAACGATGCCTCTTTCTTTTCTCAGATGTTGCCCAAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR TCA 90 bp ACAAGCAGTGGAATGGGGGTGGATATTAAAGACACTGTAATTCCATaGGGCCATGATTCGAGTGGTCCACATACAGAGGCACAGCCCACC +
Preference number: 1 (lower is better)
Translates to: TSSGMGVDIKDTVIP*GHDSSGPHTEAQPT
Trigger: GGTGGGCTGTGCCTCTGTATGTGGACCACTCGAATCATGGCCTCATGGAATTACAGTGTCTTTAATATCCACCCCCATTCCACTGCTTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000201438.4
3UTR GCA 90 bp TCGACCCTAGCTAAAGCCCAGACGGCATCAACATGCCTTTGTCTCTaGCTCGTTGCTGTCAGTCTTAACCTCAAACATACCTTCCCTTCT +
Preference number: 1 (lower is better)
Translates to: STLAKAQTASTCLCL*LVAVSLNLKHTFPS
Trigger: AGAAGGGAAGGTATGTTTGAGGTTAAGACTGACAGCAACGAGGCAGAGACAAAGGCATGTTGATGCCGTCTGGGCTTTAGCTAGGGTCGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201438.4
3UTR TCA 90 bp TTCTTTAAGGTTCGATGCCTGTTAACTGCGGGTGTGAACTGCTGGTaGTGGTGTGGTTCACAAGAAAGGATCATGGAGTGGGACAGAGAG +
Preference number: 1 (lower is better)
Translates to: FFKVRCLLTAGVNCW*WCGSQERIMEWDRE
Trigger: CTCTCTGTCCCACTCCATGATCCTTTCTTGTGAACCACACCATCACCAGCAGTTCACACCCGCAGTTAACAGGCATCGAACCTTAAAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR GCA 90 bp GGGAGAGTTGGACAGTGTCTACCGGTCCAAGAAGATAGAAAGCTCTaGTCACTGACTGGCTGTGGTTTGTTCTATGCAAAACTAGTCAGG +
Preference number: 1 (lower is better)
Translates to: GRVGQCLPVQEDRKL*SLTGCGLFYAKLVR
Trigger: CCTGACTAGTTTTGCATAGAACAAACCACAGCCAGTCAGTGAGCAGAGCTTTCTATCTTCTTGGACCGGTAGACACTGTCCAACTCTCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR TCA 90 bp AAGTCATTTCTACGCATTGAACGAGCACAATATTTGGAATTGGCCTaGGCAAGTCCTCCTCAGCCTGAAACCCTGATTGTTTCCCCCACC +
Preference number: 1 (lower is better)
Translates to: KSFLRIERAQYLELA*ASPPQPETLIVSPT
Trigger: GGTGGGGGAAACAATCAGGGTTTCAGGCTGAGGAGGACTTGCTCAGGCCAATTCCAAATATTGTGCTCGTTCAATGCGTAGAAATGACTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
3UTR GCA 90 bp AGAGTTTGTGTTGATTTGGTTCAGAGAGACTTTCTGGCATTCGAGTaGAGCATCTTGGCTTTGAGACCTTGTGGTCAGCTGAGACACCCT +
Preference number: 1 (lower is better)
Translates to: RVCVDLVQRDFLAFE*SILALRPCGQLRHP
Trigger: AGGGTGTCTCAGCTGACCACAAGGTCTCAAAGCCAAGATGCTGCACTCGAATGCCAGAAAGTCTCTCTGAACCAAATCAACACAAACTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR GCA 90 bp CTCTTAAAAAGAATAACCACAGGTCAGCTCCTGTTTTGTGCTGTTTaGGATGTTGCCTGCAGGTGGCGCTCTAGAATTGTCCTAGCTGTG +
Preference number: 1 (lower is better)
Translates to: LLKRITTGQLLFCAV*DVACRWRSRIVLAV
Trigger: CACAGCTAGGACAATTCTAGAGCGCCACCTGCAGGCAACATCGCAAACAGCACAAAACAGGAGCTGACCTGTGGTTATTCTTTTTAAGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR CCA 90 bp TGCTCACTGACTGGCTGTGGTTTGTTCTATGCAAAACTAGTCAGGTaGACTGTGAGATTACATCCAAAGTGCTTCTACTGCAAGGCGGAC +
Preference number: 1 (lower is better)
Translates to: CSLTGCGLFYAKLVR*TVRLHPKCFYCKAD
Trigger: GTCCGCCTTGCAGTAGAAGCACTTTGGATGTAATCTCACAGTCCACCTGACTAGTTTTGCATAGAACAAACCACAGCCAGTCAGTGAGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR TCA 90 bp AGCCGCCTCTGTTTGTATCCTGTTAAGTTTACTCCTAAGTTGCATTaGCCGAGTGTGGAACATGCAGTAACGTCTGCCCAAGCGATAGAA +
Preference number: 1 (lower is better)
Translates to: SRLCLYPVKFTPKLH*PSVEHAVTSAQAIE
Trigger: TTCTATCGCTTGGGCAGACGTTACTGCATGTTCCACACTCGGTCAATGCAACTTAGGAGTAAACTTAACAGGATACAAACAGAGGCGGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
3UTR TCA 90 bp GGACCAGGTCAGAGTAAAAGGCAAATATCTTTAGGAGATTGTCACTaGACTAGTCTTCCGCCCACTCTCTTCTTCCTTTCGTCCCTTCCA +
Preference number: 1 (lower is better)
Translates to: GPGQSKRQISLGDCH*TSLPPTLFFLSSLP
Trigger: TGGAAGGGACGAAAGGAAGAAGAGAGTGGGCGGAAGACTAGTTCAGTGACAATCTCCTAAAGATATTTGCCTTTTACTCTGACCTGGTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201438.4
3UTR GCA 90 bp TCTCAGACTGTAAGCCAGCCCCAATTAAACATTGTCCTTTGTAAATaGTGCTGCGGTCATGGTGTCTCTTCACAGCCAGGAAACCATAAC +
Preference number: 1 (lower is better)
Translates to: SQTVSQPQLNIVLCK*CCGHGVSSQPGNHN
Trigger: GTTATGGTTTCCTGGCTGTGAAGAGACACCATGACCGCAGCAGCATTTACAAAGGACAATGTTTAATTGGGGCTGGCTTACAGTCTGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096198.10
3UTR CCA 90 bp ACTCGATTCCCTCCATACTATGCTCAGGGAGAGTTTGTGTTGATTTaGTTCAGAGAGACTTTCTGGCATTCGAGTGCAGCATCTTGGCTT +
Preference number: 1 (lower is better)
Translates to: TRFPPYYAQGEFVLI*FRETFWHSSAASWL
Trigger: AAGCCAAGATGCTGCACTCGAATGCCAGAAAGTCTCTCTGAACCAAATCAACACAAACTCTCCCTGAGCATAGTATGGAGGGAATCGAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR TCA 90 bp GGTAGTGGTCAATTGGTTAATTATGTCTCCCTACCCAGAGGTGTATaGAAGACTTGTACACTGAGAGGATTGCAGCCGGTATGGAACTCT +
Preference number: 1 (lower is better)
Translates to: GSGQLVNYVSLPRGV*KTCTLRGLQPVWNS
Trigger: AGAGTTCCATACCGGCTGCAATCCTCTCAGTGTACAAGTCTTTCATACACCTCTGGGTAGGGAGACATAATTAACCAATTGACCACTACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
3UTR CCA 90 bp TTTACGGTAAGTGCTTCTAGTACAAGCATTTATGCAGCACTGCTGTaGACCAGGCCCTATGCTATAGACACTACATATTTACACATGCAC +
Preference number: 1 (lower is better)
Translates to: FTVSASSTSIYAALL*TRPYAIDTTYLHMH
Trigger: GTGCATGTGTAAATATGTAGTGTCTATAGCATAGGGCCTGGTCCACAGCAGTGCTGCATAAATGCTTGTACTAGAAGCACTTACCGTAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201438.4
3UTR TCA 90 bp TTAATTATGTCTCCCTACCCAGAGGTGTATGAAAGACTTGTACACTaGGAGGATTGCAGCCGGTATGGAACTCTTACCATTTCTCCAAAT +
Preference number: 1 (lower is better)
Translates to: LIMSPYPEVYERLVH*EDCSRYGTLTISPN
Trigger: ATTTGGAGAAATGGTAAGAGTTCCATACCGGCTGCAATCCTCTCAGTGTACAAGTCTTTCATACACCTCTGGGTAGGGAGACATAATTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
3UTR TCA 90 bp TGTCTCACTGACTTCCAAGCCTTCTCCACTTTAACTAGTCTGACCTaGCTAGTTAACTGGGCAAGTTGCTCCTTGACTAAAATGATTACA +
Preference number: 1 (lower is better)
Translates to: CLTDFQAFSTLTSLT*LVNWASCSLTKMIT
Trigger: TGTAATCATTTTAGTCAAGGAGCAACTTGCCCAGTTAACTAGTCAGGTCAGACTAGTTAAAGTGGAGAAGGCTTGGAAGTCAGTGAGACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201438.4
3UTR GCA 90 bp ATAAACTTCCAATCCACTTATACATTCTCATTTCTCAAGCATTTCTaGCATTTCCGCATTAACAGAACAGGGAACGAGTGGAGGGGTAAG +
Preference number: 1 (lower is better)
Translates to: INFQSTYTFSFLKHF*HFRINRTGNEWRGK
Trigger: CTTACCCCTCCACTCGTTCCCTGTTCTGTTAATGCGGAAATGGCAGAAATGCTTGAGAAATGAGAATGTATAAGTGGATTGGAAGTTTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR GCA 90 bp ATATTATATTTATATATCTATATATATATGTGCAGTGGTACTGGCTaGTGCCGCTCTTTGACAGGCTTCATGAATATTTGGCAAAGCCCT +
Preference number: 1 (lower is better)
Translates to: ILYLYIYIYMCSGTG*CRSLTGFMNIWQSP
Trigger: AGGGCTTTGCCAAATATTCATGAAGCCTGTCAAAGAGCGGCAGCAGCCAGTACCACTGCACATATATATATAGATATATAAATATAATAT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR TCA 90 bp CTATGTCGCTTCAGGGGCCCTGAGGGGGAGCTTGTCTCTCTGTGCGCAGCTTCAGTCCTGTCCGAAGGCTaGGCCAATGCGAGGGACAGG +
Preference number: 2 (lower is better)
Translates to: LCRFRGPEGELVSLCAASVLSEG*ANARDR
Trigger: CCTGTCCCTCGCATTGGCTCAGCCTTCGGACAGGAC...TGAAGCTGCGCACAGAGAGACAAGCTCCCCCTCAGGGCCCCTGAAGCGACATAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR TCA 90 bp CTATGTCGCTTCAGGGGCCCTGAGGGGGAGCTTGTCTCTCTGTGCGCAGCTTCAGGCTGTTGGAGGGTGTaGGAAACTGAGGCACAGCCT +
Preference number: 2 (lower is better)
Translates to: LCRFRGPEGELVSLCAASGCWRV*ETEAQP
Trigger: AGGCTGTGCCTCAGTTTCTCACACCCTCCAACAGCC...TGAAGCTGCGCACAGAGAGACAAGCTCCCCCTCAGGGCCCCTGAAGCGACATAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR TCA 90 bp CTATGTCGCTTCAGGGGCCCTGAGGGGGAGCTTGTCTCTCTGTGCGCAGCTTCATGGACAGATGGAAGGTaGGGGGCATTGCTGGGAGAG +
Preference number: 2 (lower is better)
Translates to: LCRFRGPEGELVSLCAASWTDGR*GALLGE
Trigger: CTCTCCCAGCAATGCCCCTCACCTTCCATCTGTCCA...TGAAGCTGCGCACAGAGAGACAAGCTCCCCCTCAGGGCCCCTGAAGCGACATAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR TCA 90 bp CTATGTCGCTTCAGGGGCCCTGAGGGGGAGCTTGTCTCTCTGTGCGCAGCTTCACTCAGCCTGAAACCCTaGTTGTTTCCCCCACCGTCT +
Preference number: 2 (lower is better)
Translates to: LCRFRGPEGELVSLCAASLSLKP*LFPPPS
Trigger: AGACGGTGGGGGAAACAATCAGGGTTTCAGGCTGAG...TGAAGCTGCGCACAGAGAGACAAGCTCCCCCTCAGGGCCCCTGAAGCGACATAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR GCA 90 bp CTATGTCGCTTCAGGGGCCCTGAGGGGGAGCTTGTCTCTCTGTGCGCAGCTTCAAGTCATGGCGACTACTaGTCAGGGGCTTTGGCTCTG +
Preference number: 2 (lower is better)
Translates to: LCRFRGPEGELVSLCAASSHGDY*SGALAL
Trigger: CAGAGCCAAAGCCCCTGAGCAGTAGTCGCCATGACT...TGAAGCTGCGCACAGAGAGACAAGCTCCCCCTCAGGGCCCCTGAAGCGACATAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR CAA 90 bp TTAGACAGCTCAGGAGCCCACGTCCAGGTGAGCAATATGGCAGCATaGACAGTGAGTCCAGGGGTCGGGGGTCAGATGGCCACATGGTTC +
Preference number: 2 (lower is better)
Translates to: LDSSGAHVQVSNMAA*TVSPGVGGQMATWF
Trigger: GAACCATGTGGCCATCTGACCCCCGACCCCTGGACTCACTGTCAATGCTGCCATATTGCTCACCTGGACGTGGGCTCCTGAGCTGTCTAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000096198.10
ENSMUST00000200959.2
3UTR-3UTR GCA 90 bp AAGAACAGCAGTGATGAGCCAGGCTGGGGAGAGCATCTGCTGCCCCAGTTAGTGCTGCAGATGAAGGCCTaGCTGGGGGTTACCACCCTT +
Preference number: 2 (lower is better)
Translates to: KNSSDEPGWGEHLLPQLVLQMKA*LGVTTL
Trigger: AAGGGTGGTAACCCCCAGGCAGGCCTTCATCTGCAG...CACTAACTGGGGCAGCAGATGCTCTCCCCAGCCTGGCTCATCACTGCTGTTCTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000201438.4
3UTR-3UTR GCA 90 bp GCCATTTCCGCATTAACAGAACAGGGAACGAGTGGAGGGGTAAGGAAGGAGATATGGTGGACTGGAAGCTaGCGGGCAGCGTGCTTGCGC +
Preference number: 2 (lower is better)
Translates to: AISALTEQGTSGGVRKEIWWTGS*RAACLR
Trigger: GCGCAAGCACGCTGCCCGGCAGCTTCCAGTCCACCA...TATCTCCTTCCTTACCCCTCCACTCGTTCCCTGTTCTGTTAATGCGGAAATGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR CCA 90 bp GCTGCAGATGAAGGCCTGCCTGGGGGTTACCACCCTTGTGGTTCCTCTCCTCACTTTCAAACGCATGGATaGAATGAGAGCCGCATGCCC +
Preference number: 2 (lower is better)
Translates to: AADEGLPGGYHPCGSSPHFQTHG*NESRMP
Trigger: GGGCATGCGGCTCTCATTCCATCCATGCGTTTGAAA...GTGAGGAGAGGAACCACAAGGGTGGTAACCCCCAGGCAGGCCTTCATCTGCAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000201438.4
3UTR-3UTR GCA 90 bp CCTCTTCCTCAAGTCCAAAGAATACTTTGCCCTTCCCTGGCGCCTTTGTCTCTGCAGACTCGGCTTTCCTaGTCCCACCCTCTGCCCTGT +
Preference number: 2 (lower is better)
Translates to: PLPQVQRILCPSLAPLSLQTRLS*SHPLPC
Trigger: ACAGGGCAGAGGGTGGGAGCAGGAAAGCCGAGTCTG...CAGAGACAAAGGCGCCAGGGAAGGGCAAAGTATTCTTTGGACTTGAGGAAGAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR CCA 90 bp CCTCTTCCTCAAGTCCAAAGAATACTTTGCCCTTCCCTGGCGCCTTTGTCTCTGGAAGGGGAGCCCTGCTaGCTGGAGGGATATGGCAGA +
Preference number: 2 (lower is better)
Translates to: PLPQVQRILCPSLAPLSLEGEPC*LEGYGR
Trigger: TCTGCCATATCCCTCCAGCCAGCAGGGCTCCCCTTC...CAGAGACAAAGGCGCCAGGGAAGGGCAAAGTATTCTTTGGACTTGAGGAAGAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR CCA 90 bp CAGTTCCTTCTCCAGCATCATGTCTGCCTGGATGCTCCCATGCTTCTGGCCATGATGCTGCTGCGGTCATaGTGTCTCTTCACAGCCAGG +
Preference number: 2 (lower is better)
Translates to: QFLLQHHVCLDAPMLLAMMLLRS*CLFTAR
Trigger: CCTGGCTGTGAAGAGACACCATGACCGCAGCAGCAT...CATGGCCAGAAGCATGGGAGCATCCAGGCAGACATGATGCTGGAGAAGGAACTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096198.10
3UTR CAA 90 bp AGGGCTGGGTCCTGTCCGAAGGCTGAGCCAATGCGAGGGACAGGATaGCTAGTGTCTGTTGGTGTATGGACCTCATGCATGACTTCTGAA +
Preference number: 2 (lower is better)
Translates to: RAGSCPKAEPMRGTG*LVSVGVWTSCMTSE
Trigger: TTCAGAAGTCATGCATGAGGTCCATACACCAACAGACACTAGCAATCCTGTCCCTCGCATTGGCTCAGCCTTCGGACAGGACCCAGCCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
3UTR-3UTR CCA 90 bp GGAAGAAGGGAGTGTTTTCACACAACCAGTAGTCATGGCGACTACTGCTCAGGGGCGATCTGCTGGTCCTaGCAGCCGCCTCTGTTTGTA +
Preference number: 2 (lower is better)
Translates to: GRRECFHTTSSHGDYCSGAICWS*QPPLFV
Trigger: TACAAACAGAGGCGGCTGCCAGGACCAGCAGATCGC...CCCTGAGCAGTAGTCGCCATGACTACTGGTTGTGTGAAAACACTCCCTTCTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR CCA 90 bp CTATGTCGCTTCAGGGGCCCTGAGGGGGAGCTTGTCTCTCTGTGCGCAGCTTCAGTGTCTGTTGGTGTATaGACCTCATGCATGACTTCT +
Preference number: 2 (lower is better)
Translates to: LCRFRGPEGELVSLCAASVSVGV*TSCMTS
Trigger: AGAAGTCATGCATGAGGTCCATACACCAACAGACAC...TGAAGCTGCGCACAGAGAGACAAGCTCCCCCTCAGGGCCCCTGAAGCGACATAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR CCA 90 bp AATGGAAGAGCCTACAGCCTTATCTCAGCCAACACTGCTGTCCTTGCCAGCCCTCTGGCTGGAGGGATATaGCAGAAGCAGGAAGAACCG +
Preference number: 2 (lower is better)
Translates to: NGRAYSLISANTAVLASPLAGGI*QKQEEP
Trigger: CGGTTCTTCCTGCTTCTGCCATATCCCTCCAGCCAG...AGGGCTGGCAAGGACAGCAGTGTTGGCTGAGATAAGGCTGTAGGCTCTTCCATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR CAA 90 bp TGTCCTAGCTGTGGTGACACGGACACACTCTCTGAGCTGGGAGAGTaGGACAGTGTCTACCGGTCCAAGAAGATAGAAAGCTCTGCTCAC +
Preference number: 2 (lower is better)
Translates to: CPSCGDTDTLSELGE*DSVYRSKKIESSAH
Trigger: GTGAGCAGAGCTTTCTATCTTCTTGGACCGGTAGACACTGTCCAACTCTCCCAGCTCAGAGAGTGTGTCCGTGTCACCACAGCTAGGACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR TCA 90 bp CTCCCTACCCAGAGGTGTATGAAAGACTTGTACACTGAGAGGATTGCAGCCGGTCTCAGCCTGAAACCCTaGTTGTTTCCCCCACCGTCT +
Preference number: 2 (lower is better)
Translates to: LPTQRCMKDLYTERIAAGLSLKP*LFPPPS
Trigger: AGACGGTGGGGGAAACAATCAGGGTTTCAGGCTGAG...ACCGGCTGCAATCCTCTCAGTGTACAAGTCTTTCATACACCTCTGGGTAGGGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
3UTR-3UTR TCA 90 bp GGAAGAAGGGAGTGTTTTCACACAACCAGTAGTCATGGCGACTACTGCTCAGGGCTCAGCCTGAAACCCTaGTTGTTTCCCCCACCGTCT +
Preference number: 2 (lower is better)
Translates to: GRRECFHTTSSHGDYCSGLSLKP*LFPPPS
Trigger: AGACGGTGGGGGAAACAATCAGGGTTTCAGGCTGAG...CCCTGAGCAGTAGTCGCCATGACTACTGGTTGTGTGAAAACACTCCCTTCTTCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR TCA 90 bp AATGGAAGAGCCTACAGCCTTATCTCAGCCAACACTGCTGTCCTTGCCAGCCCTAAGTCCTCCTCAGCCTaGAACCCTGATTGTTTCCCC +
Preference number: 2 (lower is better)
Translates to: NGRAYSLISANTAVLASPKSSSA*NPDCFP
Trigger: GGGGAAACAATCAGGGTTTCAGGCTGAGGAGGACTT...AGGGCTGGCAAGGACAGCAGTGTTGGCTGAGATAAGGCTGTAGGCTCTTCCATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR GCA 90 bp CTATGTCGCTTCAGGGGCCCTGAGGGGGAGCTTGTCTCTCTGTGCGCAGCTTCACACAGCATGCCATCATaGAAGTCATTTCTACGCATT +
Preference number: 2 (lower is better)
Translates to: LCRFRGPEGELVSLCAASHSMPS*KSFLRI
Trigger: AATGCGTAGAAATGACTTGCATGATGGCATGCTGTG...TGAAGCTGCGCACAGAGAGACAAGCTCCCCCTCAGGGCCCCTGAAGCGACATAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR GCA 90 bp ACTTTTCTAAAGATCAGGTATCGTTTAGGGCAGCATCAGGCTCCATGCACTCACTGGGAAGGGGAGCCCTaGTGGCTGGAGGGATATGGC +
Preference number: 2 (lower is better)
Translates to: TFLKIRYRLGQHQAPCTHWEGEP*WLEGYG
Trigger: GCCATATCCCTCCAGCCAGCAGGGCTCCCCTTCCCA...GTGAGTGCATGGAGCCTGATGCTGCCCTAAACGATACCTGATCTTTAGAAAAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR GCA 90 bp CCTCTTCCTCAAGTCCAAAGAATACTTTGCCCTTCCCTGGCGCCTTTGTCTCTGGAAGGTGAGGGGCATTaGTGGGAGAGGTCTGATCAG +
Preference number: 2 (lower is better)
Translates to: PLPQVQRILCPSLAPLSLEGEGH*WERSDQ
Trigger: CTGATCAGACCTCTCCCAGCAATGCCCCTCACCTTC...CAGAGACAAAGGCGCCAGGGAAGGGCAAAGTATTCTTTGGACTTGAGGAAGAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR GCA 90 bp GCCATTTCCGCATTAACAGAACAGGGAACGAGTGGAGGGGTAAGGAAGGAGATAGGGACAGCCCCAGTCTaGCGGTCTGATAATGGGAGT +
Preference number: 2 (lower is better)
Translates to: AISALTEQGTSGGVRKEIGTAPV*RSDNGS
Trigger: ACTCCCATTATCAGACCGGCAGACTGGGGCTGTCCC...TATCTCCTTCCTTACCCCTCCACTCGTTCCCTGTTCTGTTAATGCGGAAATGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR CCA 90 bp CCGGTATGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGGCGATCTGCTGGTCCTaGCAGCCGCCTCTGTTTGTA +
Preference number: 2 (lower is better)
Translates to: PVWNSYHFSKYSEQCRAGAICWS*QPPLFV
Trigger: TACAAACAGAGGCGGCTGCCAGGACCAGCAGATCGC...CCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCATACCGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
3UTR-3UTR CCA 90 bp GAACTCTCAGTTCCTTCTCCAGCATCATGTCTGCCTGGATGCTCCCATGCTTCTGGTTGGAAGAGAAGGTaGAGGGACCGGTTAGACAGC +
Preference number: 2 (lower is better)
Translates to: ELSVPSPASCLPGCSHASGWKRR*RDRLDS
Trigger: GCTGTCTAACCGGTCCCTCCACCTTCTCTTCCAACC...AGAAGCATGGGAGCATCCAGGCAGACATGATGCTGGAGAAGGAACTGAGAGTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096198.10
3UTR-3UTR CCA 90 bp GCTGCGGTCATGGTGTCTCTTCACAGCCAGGAAACCATAACTAAGACACTGCTTCAGGCAGTCGTGGGTTaGAAGAGAAGGTGGAGGGAC +
Preference number: 2 (lower is better)
Translates to: AAVMVSLHSQETITKTLLQAVVG*KRRWRD
Trigger: GTCCCTCCACCTTCTCTTCCAACCCACGACTGCCTG...AAGCAGTGTCTTAGTTATGGTTTCCTGGCTGTGAAGAGACACCATGACCGCAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096198.10
3UTR-3UTR TCA 90 bp GGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCCTCAGCCTGAAACCCTaGTTGTTTCCCCCACCGTCT +
Preference number: 2 (lower is better)
Translates to: GTLTISPNTVNSAGLGPVLSLKP*LFPPPS
Trigger: AGACGGTGGGGGAAACAATCAGGGTTTCAGGCTGAG...GACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
3UTR-3UTR TCA 90 bp CTATGTCGCTTCAGGGGCCCTGAGGGGGAGCTTGTCTCTCTGTGCGCAGCTTCAGCTCTGCGTTTTAAATaGACAGCATCACATGACTTT +
Preference number: 2 (lower is better)
Translates to: LCRFRGPEGELVSLCAASALRFK*TASHDF
Trigger: AAAGTCATGTGATGCTGTTCATTTAAAACGCAGAGC...TGAAGCTGCGCACAGAGAGACAAGCTCCCCCTCAGGGCCCCTGAAGCGACATAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR GCA 90 bp CTATGTCGCTTCAGGGGCCCTGAGGGGGAGCTTGTCTCTCTGTGCGCAGCTTCACCCACGTGGAGAAGATaGTGTTATGTTAAAGAAACA +
Preference number: 2 (lower is better)
Translates to: LCRFRGPEGELVSLCAASPTWRR*CYVKET
Trigger: TGTTTCTTTAACATAACAGCATCTTCTCCACGTGGG...TGAAGCTGCGCACAGAGAGACAAGCTCCCCCTCAGGGCCCCTGAAGCGACATAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR GCA 90 bp GGAAGAAGGGAGTGTTTTCACACAACCAGTAGTCATGGCGACTACTGCTCAGGGCGTCTCCAAACCATGTaGCACCCACGTGGAGAAGAT +
Preference number: 2 (lower is better)
Translates to: GRRECFHTTSSHGDYCSGRLQTM*HPRGED
Trigger: ATCTTCTCCACGTGGGTGGCACATGGTTTGGAGACG...CCCTGAGCAGTAGTCGCCATGACTACTGGTTGTGTGAAAACACTCCCTTCTTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR GCA 90 bp AACTCTCAGTTCCTTCTCCAGCATCATGTCTGCCTGGATGCTCCCATGCTTCTGCTGCTTTTTCCACTCTaGCATTCTGGCAGGCAGTCG +
Preference number: 2 (lower is better)
Translates to: NSQFLLQHHVCLDAPMLLLLFPL*HSGRQS
Trigger: CGACTGCCTGCCAGAATGGCAGAGTGGAAAAAGCAG...CAGAAGCATGGGAGCATCCAGGCAGACATGATGCTGGAGAAGGAACTGAGAGTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000096198.10
3UTR-3UTR CCA 90 bp TGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTGCGATCTGCTGGTCCTaGCAGCCGCCTCTGTTTGTA +
Preference number: 2 (lower is better)
Translates to: WNSYHFSKYSEQCRAGSCAICWS*QPPLFV
Trigger: TACAAACAGAGGCGGCTGCCAGGACCAGCAGATCGC...ACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
3UTR-3UTR TCA 90 bp CTCCCTACCCAGAGGTGTATGAAAGACTTGTACACTGAGAGGATTGCAGCCGGTTTTCTCCAAATACAGTaGACAGTGCAGGGCTGGGTC +
Preference number: 2 (lower is better)
Translates to: LPTQRCMKDLYTERIAAGFLQIQ*TVQGWV
Trigger: GACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAA...ACCGGCTGCAATCCTCTCAGTGTACAAGTCTTTCATACACCTCTGGGTAGGGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
3UTR-3UTR TCA 90 bp ACTTTTCTAAAGATCAGGTATCGTTTAGGGCAGCATCAGGCTCCATGCACTCACCACGGACACACTCTCTaGGCTGGGAGAGTTGGACAG +
Preference number: 2 (lower is better)
Translates to: TFLKIRYRLGQHQAPCTHHGHTL*AGRVGQ
Trigger: CTGTCCAACTCTCCCAGCTCAGAGAGTGTGTCCGTG...GTGAGTGCATGGAGCCTGATGCTGCCCTAAACGATACCTGATCTTTAGAAAAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR TCA 90 bp CCTCTTCCTCAAGTCCAAAGAATACTTTGCCCTTCCCTGGCGCCTTTGTCTCTGACTTCAAGATCCTCCTaGGTGTTCCTAGACCAGGAG +
Preference number: 2 (lower is better)
Translates to: PLPQVQRILCPSLAPLSLTSRSS*VFLDQE
Trigger: CTCCTGGTCTAGGAACACTCAGGAGGATCTTGAAGT...CAGAGACAAAGGCGCCAGGGAAGGGCAAAGTATTCTTTGGACTTGAGGAAGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR GCA 90 bp GGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCCGTCTCCAAACCATGTaGCACCCACGTGGAGAAGAT +
Preference number: 2 (lower is better)
Translates to: GTLTISPNTVNSAGLGPVRLQTM*HPRGED
Trigger: ATCTTCTCCACGTGGGTGGCACATGGTTTGGAGACG...GACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
3UTR-3UTR CCA 90 bp GAGAGCGTTATTCTACAAATGGAAGAGCCTACAGCCTTATCTCAGCCAACACTGGCGATCTGCTGGTCCTaGCAGCCGCCTCTGTTTGTA +
Preference number: 2 (lower is better)
Translates to: ESVILQMEEPTALSQPTLAICWS*QPPLFV
Trigger: TACAAACAGAGGCGGCTGCCAGGACCAGCAGATCGC...CAGTGTTGGCTGAGATAAGGCTGTAGGCTCTTCCATTTGTAGAATAACGCTCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR CCA 90 bp AAGTGTGTCACAGGGACAGGCTTTGAGGTCTCAGATGTAGAACTCTCAGTTCCTTCTGGCAGGCAGTCGTaGGTTGGAAGAGAAGGTGGA +
Preference number: 2 (lower is better)
Translates to: KCVTGTGFEVSDVELSVPSGRQS*VGREGG
Trigger: TCCACCTTCTCTTCCAACCCACGACTGCCTGCCAGA...AGGAACTGAGAGTTCTACATCTGAGACCTCAAAGCCTGTCCCTGTGACACACTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096198.10
3UTR CAA 90 bp TTGGTTCAGAGAGACTTTCTGGCATTCGAGTGCAGCATCTTGGCTTaGAGACCTTGTGGTCAGCTGAGACACCCTGGACTAAGAACTGTC +
Preference number: 2 (lower is better)
Translates to: LVQRDFLAFECSILA*RPCGQLRHPGLRTV
Trigger: GACAGTTCTTAGTCCAGGGTGTCTCAGCTGACCACAAGGTCTCAAAGCCAAGATGCTGCACTCGAATGCCAGAAAGTCTCTCTGAACCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR TCA 90 bp CTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCCGAAGGGCTGCTCTGTGTCCGTaGGATTCGGAAGTTTGTAAA +
Preference number: 2 (lower is better)
Translates to: LTISPNTVNSAGLGPVRRAALCP*DSEVCK
Trigger: TTTACAAACTTCCGAATCTCACGGACACAGAGCAGC...CCTTCGGACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
3UTR-3UTR TCA 90 bp CTCCCTACCCAGAGGTGTATGAAAGACTTGTACACTGAGAGGATTGCAGCCGGTGCTGCTCTGTGTCCGTaGGATTCGGAAGTTTGTAAA +
Preference number: 2 (lower is better)
Translates to: LPTQRCMKDLYTERIAAGAALCP*DSEVCK
Trigger: TTTACAAACTTCCGAATCTCACGGACACAGAGCAGC...ACCGGCTGCAATCCTCTCAGTGTACAAGTCTTTCATACACCTCTGGGTAGGGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
3UTR-3UTR TCA 90 bp CTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCCGAAGGACTCCTAAGTTGCATTaGCCGAGTGTGGAACATGCA +
Preference number: 2 (lower is better)
Translates to: LTISPNTVNSAGLGPVRRTPKLH*PSVEHA
Trigger: TGCATGTTCCACACTCGGTCAATGCAACTTAGGAGT...CCTTCGGACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
3UTR-3UTR TCA 90 bp TGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTAAGTCCTCCTCAGCCTaGAACCCTGATTGTTTCCCC +
Preference number: 2 (lower is better)
Translates to: WNSYHFSKYSEQCRAGSCKSSSA*NPDCFP
Trigger: GGGGAAACAATCAGGGTTTCAGGCTGAGGAGGACTT...ACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
3UTR-3UTR TCA 90 bp CTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCCGAAGGCTCATGCATGACTTCTaGACACAGCATGCCATCATG +
Preference number: 2 (lower is better)
Translates to: LTISPNTVNSAGLGPVRRLMHDF*TQHAIM
Trigger: CATGATGGCATGCTGTGTTCAGAAGTCATGCATGAG...CCTTCGGACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
3UTR-3UTR TCA 90 bp CTCCCTACCCAGAGGTGTATGAAAGACTTGTACACTGAGAGGATTGCAGCCGGTTATGGACCTCATGCATaGCTTCTGAACACAGCATGC +
Preference number: 2 (lower is better)
Translates to: LPTQRCMKDLYTERIAAGYGPHA*LLNTAC
Trigger: GCATGCTGTGTTCAGAAGTCATGCATGAGGTCCATA...ACCGGCTGCAATCCTCTCAGTGTACAAGTCTTTCATACACCTCTGGGTAGGGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
3UTR-3UTR TCA 90 bp GCCATTTCCGCATTAACAGAACAGGGAACGAGTGGAGGGGTAAGGAAGGAGATATTTCTCCAAATACAGTaGACAGTGCAGGGCTGGGTC +
Preference number: 2 (lower is better)
Translates to: AISALTEQGTSGGVRKEIFLQIQ*TVQGWV
Trigger: GACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAA...TATCTCCTTCCTTACCCCTCCACTCGTTCCCTGTTCTGTTAATGCGGAAATGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR TCA 90 bp GCCATTTCCGCATTAACAGAACAGGGAACGAGTGGAGGGGTAAGGAAGGAGATAAAGCAGAAAGCAAGGTaGGCTGAAAGGAAAGGCCAG +
Preference number: 2 (lower is better)
Translates to: AISALTEQGTSGGVRKEIKQKAR*AERKGQ
Trigger: CTGGCCTTTCCTTTCAGCTCACCTTGCTTTCTGCTT...TATCTCCTTCCTTACCCCTCCACTCGTTCCCTGTTCTGTTAATGCGGAAATGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR TCA 90 bp CCTCTTCCTCAAGTCCAAAGAATACTTTGCCCTTCCCTGGCGCCTTTGTCTCTGATGGAATGGAAGATATaGCGCCCCTCTAGAAGCCAT +
Preference number: 2 (lower is better)
Translates to: PLPQVQRILCPSLAPLSLMEWKI*RPSRSH
Trigger: ATGGCTTCTAGAGGGGCGTCATATCTTCCATTCCAT...CAGAGACAAAGGCGCCAGGGAAGGGCAAAGTATTCTTTGGACTTGAGGAAGAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR TCA 90 bp GCCATTTCCGCATTAACAGAACAGGGAACGAGTGGAGGGGTAAGGAAGGAGATAGCAAGTCTTGTCCTCTaGACCCAGACTTCCTCTTCT +
Preference number: 2 (lower is better)
Translates to: AISALTEQGTSGGVRKEIASLVL*TQTSSS
Trigger: AGAAGAGGAAGTCTGGGTTCAGAGGACAAGACTTGC...TATCTCCTTCCTTACCCCTCCACTCGTTCCCTGTTCTGTTAATGCGGAAATGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR GCA 90 bp CCTCTTCCTCAAGTCCAAAGAATACTTTGCCCTTCCCTGGCGCCTTTGTCTCTGTGCAGCGGATCCATCTaGTTGTTTGGTTGGGTTGTT +
Preference number: 2 (lower is better)
Translates to: PLPQVQRILCPSLAPLSLCSGSI*LFGWVV
Trigger: AACAACCCAACCAAACAAGCAGATGGATCCGCTGCA...CAGAGACAAAGGCGCCAGGGAAGGGCAAAGTATTCTTTGGACTTGAGGAAGAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR CCA 90 bp GGAAGAAGGGAGTGTTTTCACACAACCAGTAGTCATGGCGACTACTGCTCAGGGGGATTGCAGCCGGTATaGAACTCTTACCATTTCTCC +
Preference number: 2 (lower is better)
Translates to: GRRECFHTTSSHGDYCSGGLQPV*NSYHFS
Trigger: GGAGAAATGGTAAGAGTTCCATACCGGCTGCAATCC...CCCTGAGCAGTAGTCGCCATGACTACTGGTTGTGTGAAAACACTCCCTTCTTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR CCA 90 bp CTCACTGACTGGCTGTGGTTTGTTCTATGCAAAACTAGTCAGGTGGACTGTGAGAGAAACAAGACCAAGTaGGCTCTGTCCAGAGGCAGC +
Preference number: 2 (lower is better)
Translates to: LTDWLWFVLCKTSQVDCERNKTK*ALSRGS
Trigger: GCTGCCTCTGGACAGAGCCCACTTGGTCTTGTTTCT...CTCACAGTCCACCTGACTAGTTTTGCATAGAACAAACCACAGCCAGTCAGTGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR CCA 90 bp AATCATAACCATGAACAAGGCAGAAGTAAGGCCAGACCAGCTAGGTTGGTTGAAGGCTGGGTGGACAGATaGAAGGTGAGGGGCATTGCT +
Preference number: 2 (lower is better)
Translates to: NHNHEQGRSKARPARLVEGWVDR*KVRGIA
Trigger: AGCAATGCCCCTCACCTTCCATCTGTCCACCCAGCC...TTCAACCAACCTAGCTGGTCTGGCCTTACTTCTGCCTTGTTCATGGTTATGATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR CCA 90 bp ACTTTTCTAAAGATCAGGTATCGTTTAGGGCAGCATCAGGCTCCATGCACTCACGAAAGGATCATGGAGTaGGACAGAGAGAGCGAGGCG +
Preference number: 2 (lower is better)
Translates to: TFLKIRYRLGQHQAPCTHERIME*DRESEA
Trigger: CGCCTCGCTCTCTCTGTCCCACTCCATGATCCTTTC...GTGAGTGCATGGAGCCTGATGCTGCCCTAAACGATACCTGATCTTTAGAAAAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR CCA 90 bp CCTCTTCCTCAAGTCCAAAGAATACTTTGCCCTTCCCTGGCGCCTTTGTCTCTGATGAGAGAAGCCCTTTaGGCACTCTATGTCGCTTCA +
Preference number: 2 (lower is better)
Translates to: PLPQVQRILCPSLAPLSLMREAL*ALYVAS
Trigger: TGAAGCGACATAGAGTGCCCAAAGGGCTTCTCTCAT...CAGAGACAAAGGCGCCAGGGAAGGGCAAAGTATTCTTTGGACTTGAGGAAGAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR CAA 90 bp GTTGATTTGGTTCAGAGAGACTTTCTGGCATTCGAGTGCAGCATCTaGGCTTTGAGACCTTGTGGTCAGCTGAGACACCCTGGACTAAGA +
Preference number: 2 (lower is better)
Translates to: VDLVQRDFLAFECSI*ALRPCGQLRHPGLR
Trigger: TCTTAGTCCAGGGTGTCTCAGCTGACCACAAGGTCTCAAAGCCAAGATGCTGCACTCGAATGCCAGAAAGTCTCTCTGAACCAAATCAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR CAA 90 bp TGGGCCACTCGATTCCCTCCATACTATGCTCAGGGAGAGTTTGTGTaGATTTGGTTCAGAGAGACTTTCTGGCATTCGAGTGCAGCATCT +
Preference number: 2 (lower is better)
Translates to: WATRFPPYYAQGEFV*IWFRETFWHSSAAS
Trigger: AGATGCTGCACTCGAATGCCAGAAAGTCTCTCTGAACCAAATCAACACAAACTCTCCCTGAGCATAGTATGGAGGGAATCGAGTGGCCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR TCA 90 bp TGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTTATTTGGAATTGGCCTaGGCAAGTCCTCCTCAGCCT +
Preference number: 2 (lower is better)
Translates to: WNSYHFSKYSEQCRAGSCYLELA*ASPPQP
Trigger: AGGCTGAGGAGGACTTGCTCAGGCCAATTCCAAATA...ACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
3UTR-3UTR TCA 90 bp GGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCCTCATGCATGACTTCTaGACACAGCATGCCATCATG +
Preference number: 2 (lower is better)
Translates to: GTLTISPNTVNSAGLGPVLMHDF*TQHAIM
Trigger: CATGATGGCATGCTGTGTTCAGAAGTCATGCATGAG...GACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
3UTR-3UTR TCA 90 bp GCCATTTCCGCATTAACAGAACAGGGAACGAGTGGAGGGGTAAGGAAGGAGATACTCATGCATGACTTCTaGACACAGCATGCCATCATG +
Preference number: 2 (lower is better)
Translates to: AISALTEQGTSGGVRKEILMHDF*TQHAIM
Trigger: CATGATGGCATGCTGTGTTCAGAAGTCATGCATGAG...TATCTCCTTCCTTACCCCTCCACTCGTTCCCTGTTCTGTTAATGCGGAAATGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR TCA 90 bp CCTCTTCCTCAAGTCCAAAGAATACTTTGCCCTTCCCTGGCGCCTTTGTCTCTGAAATCTTGGCAGTCTTaGGAAGAGGCAAGAAGCACA +
Preference number: 2 (lower is better)
Translates to: PLPQVQRILCPSLAPLSLKSWQS*EEARST
Trigger: TGTGCTTCTTGCCTCTTCTCAAGACTGCCAAGATTT...CAGAGACAAAGGCGCCAGGGAAGGGCAAAGTATTCTTTGGACTTGAGGAAGAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR GCA 90 bp AATGGAAGAGCCTACAGCCTTATCTCAGCCAACACTGCTGTCCTTGCCAGCCCTCACAGCATGCCATCATaGAAGTCATTTCTACGCATT +
Preference number: 2 (lower is better)
Translates to: NGRAYSLISANTAVLASPHSMPS*KSFLRI
Trigger: AATGCGTAGAAATGACTTGCATGATGGCATGCTGTG...AGGGCTGGCAAGGACAGCAGTGTTGGCTGAGATAAGGCTGTAGGCTCTTCCATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR GCA 90 bp GCCATTTCCGCATTAACAGAACAGGGAACGAGTGGAGGGGTAAGGAAGGAGATAGGTGTATGGACCTCATaGATGACTTCTGAACACAGC +
Preference number: 2 (lower is better)
Translates to: AISALTEQGTSGGVRKEIGVWTS*MTSEHS
Trigger: GCTGTGTTCAGAAGTCATGCATGAGGTCCATACACC...TATCTCCTTCCTTACCCCTCCACTCGTTCCCTGTTCTGTTAATGCGGAAATGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR GCA 90 bp CCGGTATGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGGGTGTATGGACCTCATaGATGACTTCTGAACACAGC +
Preference number: 2 (lower is better)
Translates to: PVWNSYHFSKYSEQCRAGGVWTS*MTSEHS
Trigger: GCTGTGTTCAGAAGTCATGCATGAGGTCCATACACC...CCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCATACCGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
3UTR-3UTR GCA 90 bp GAGACACCTACCAGGTCTCACTCTACCGAAGCAGACACTTGCAAAATATGGGAGGCTGTTGGCAGAACATaGTACGGGAAGTCTGAAATC +
Preference number: 2 (lower is better)
Translates to: ETPTRSHSTEADTCKIWEAVGRT*YGKSEI
Trigger: GATTTCAGACTTCCCGTAGCATGTTCTGCCAACAGC...CTCCCATATTTTGCAAGTGTCTGCTTCGGTAGAGTGAGACCTGGTAGGTGTCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201438.4
3UTR-3UTR CCA 90 bp CCTCTTCCTCAAGTCCAAAGAATACTTTGCCCTTCCCTGGCGCCTTTGTCTCTGGTGTCTGTTGGTGTATaGACCTCATGCATGACTTCT +
Preference number: 2 (lower is better)
Translates to: PLPQVQRILCPSLAPLSLVSVGV*TSCMTS
Trigger: AGAAGTCATGCATGAGGTCCATACACCAACAGACAC...CAGAGACAAAGGCGCCAGGGAAGGGCAAAGTATTCTTTGGACTTGAGGAAGAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR CCA 90 bp CTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCCGAAGGGTGTCTGTTGGTGTATaGACCTCATGCATGACTTCT +
Preference number: 2 (lower is better)
Translates to: LTISPNTVNSAGLGPVRRVSVGV*TSCMTS
Trigger: AGAAGTCATGCATGAGGTCCATACACCAACAGACAC...CCTTCGGACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
3UTR-3UTR CCA 90 bp AATCATAACCATGAACAAGGCAGAAGTAAGGCCAGACCAGCTAGGTTGGTTGAAGGCTTTGAGACCTTGTaGTCAGCTGAGACACCCTGG +
Preference number: 2 (lower is better)
Translates to: NHNHEQGRSKARPARLVEGFETL*SAETPW
Trigger: CCAGGGTGTCTCAGCTGACCACAAGGTCTCAAAGCC...TTCAACCAACCTAGCTGGTCTGGCCTTACTTCTGCCTTGTTCATGGTTATGATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR CCA 90 bp GCCATTTCCGCATTAACAGAACAGGGAACGAGTGGAGGGGTAAGGAAGGAGATATATATATATGTGCAGTaGTACTGGCTGCTGCCGCTC +
Preference number: 2 (lower is better)
Translates to: AISALTEQGTSGGVRKEIYIYVQ*YWLLPL
Trigger: GAGCGGCAGCAGCCAGTACCACTGCACATATATATA...TATCTCCTTCCTTACCCCTCCACTCGTTCCCTGTTCTGTTAATGCGGAAATGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR CAA 90 bp CACTCGATTCCCTCCATACTATGCTCAGGGAGAGTTTGTGTTGATTaGGTTCAGAGAGACTTTCTGGCATTCGAGTGCAGCATCTTGGCT +
Preference number: 2 (lower is better)
Translates to: HSIPSILCSGRVCVD*VQRDFLAFECSILA
Trigger: AGCCAAGATGCTGCACTCGAATGCCAGAAAGTCTCTCTGAACCAAATCAACACAAACTCTCCCTGAGCATAGTATGGAGGGAATCGAGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR TCA 90 bp TGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTGCTGCTCTGTGTCCGTaGGATTCGGAAGTTTGTAAA +
Preference number: 2 (lower is better)
Translates to: WNSYHFSKYSEQCRAGSCAALCP*DSEVCK
Trigger: TTTACAAACTTCCGAATCTCACGGACACAGAGCAGC...ACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
3UTR-3UTR TCA 90 bp TGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTACTCCTAAGTTGCATTaGCCGAGTGTGGAACATGCA +
Preference number: 2 (lower is better)
Translates to: WNSYHFSKYSEQCRAGSCTPKLH*PSVEHA
Trigger: TGCATGTTCCACACTCGGTCAATGCAACTTAGGAGT...ACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
3UTR-3UTR TCA 90 bp ACTTTTCTAAAGATCAGGTATCGTTTAGGGCAGCATCAGGCTCCATGCACTCACTATTTGGAATTGGCCTaGGCAAGTCCTCCTCAGCCT +
Preference number: 2 (lower is better)
Translates to: TFLKIRYRLGQHQAPCTHYLELA*ASPPQP
Trigger: AGGCTGAGGAGGACTTGCTCAGGCCAATTCCAAATA...GTGAGTGCATGGAGCCTGATGCTGCCCTAAACGATACCTGATCTTTAGAAAAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR TCA 90 bp GAGAGCGTTATTCTACAAATGGAAGAGCCTACAGCCTTATCTCAGCCAACACTGTATTTGGAATTGGCCTaGGCAAGTCCTCCTCAGCCT +
Preference number: 2 (lower is better)
Translates to: ESVILQMEEPTALSQPTLYLELA*ASPPQP
Trigger: AGGCTGAGGAGGACTTGCTCAGGCCAATTCCAAATA...CAGTGTTGGCTGAGATAAGGCTGTAGGCTCTTCCATTTGTAGAATAACGCTCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR TCA 90 bp AATGGAAGAGCCTACAGCCTTATCTCAGCCAACACTGCTGTCCTTGCCAGCCCTGTCATTTCTACGCATTaGACGAGCACAATATTTGGA +
Preference number: 2 (lower is better)
Translates to: NGRAYSLISANTAVLASPVISTH*TSTIFG
Trigger: TCCAAATATTGTGCTCGTTCAATGCGTAGAAATGAC...AGGGCTGGCAAGGACAGCAGTGTTGGCTGAGATAAGGCTGTAGGCTCTTCCATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR TCA 90 bp TCTCCCCATGTATTGGACAGAGCAGCAAAATGTACGACAATGGCTGTATGTCAGTTTCTCCAAATACAGTaGACAGTGCAGGGCTGGGTC +
Preference number: 2 (lower is better)
Translates to: SPHVLDRAAKCTTMAVCQFLQIQ*TVQGWV
Trigger: GACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAA...CTGACATACAGCCATTGTCGTACATTTTGCTGCTCTGTCCAATACATGGGGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR TCA 90 bp AATCATAACCATGAACAAGGCAGAAGTAAGGCCAGACCAGCTAGGTTGGTTGAAGAAAGCAAGGTGAGCTaGAAGGAAAGGCCAGGGGAA +
Preference number: 2 (lower is better)
Translates to: NHNHEQGRSKARPARLVEESKVS*KERPGE
Trigger: TTCCCCTGGCCTTTCCTTTCAGCTCACCTTGCTTTC...TTCAACCAACCTAGCTGGTCTGGCCTTACTTCTGCCTTGTTCATGGTTATGATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR GCA 90 bp CTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCCGAAGGCTTCTGAACACAGCATaGCATCATGCAAGTCATTTC +
Preference number: 2 (lower is better)
Translates to: LTISPNTVNSAGLGPVRRLLNTA*HHASHF
Trigger: GAAATGACTTGCATGATGGCATGCTGTGTTCAGAAG...CCTTCGGACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
3UTR-3UTR GCA 90 bp TGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTGGTGTATGGACCTCATaGATGACTTCTGAACACAGC +
Preference number: 2 (lower is better)
Translates to: WNSYHFSKYSEQCRAGSCGVWTS*MTSEHS
Trigger: GCTGTGTTCAGAAGTCATGCATGAGGTCCATACACC...ACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
3UTR-3UTR GCA 90 bp GCCATTTCCGCATTAACAGAACAGGGAACGAGTGGAGGGGTAAGGAAGGAGATACAGGGGCTTTGGCTCTaGGTTTTAAATGAACAGCAT +
Preference number: 2 (lower is better)
Translates to: AISALTEQGTSGGVRKEIQGLWL*VLNEQH
Trigger: ATGCTGTTCATTTAAAACGCAGAGCCAAAGCCCCTG...TATCTCCTTCCTTACCCCTCCACTCGTTCCCTGTTCTGTTAATGCGGAAATGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR GCA 90 bp CCTCTTCCTCAAGTCCAAAGAATACTTTGCCCTTCCCTGGCGCCTTTGTCTCTGGACCTGGCTTTTCTCTaGAGTACCTACTTAGAATTG +
Preference number: 2 (lower is better)
Translates to: PLPQVQRILCPSLAPLSLDLAFL*STYLEL
Trigger: CAATTCTAAGTAGGTACTGCAGAGAAAAGCCAGGTC...CAGAGACAAAGGCGCCAGGGAAGGGCAAAGTATTCTTTGGACTTGAGGAAGAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR CCA 90 bp GGAAGAAGGGAGTGTTTTCACACAACCAGTAGTCATGGCGACTACTGCTCAGGGGCAAAACTAGTCAGGTaGACTGTGAGATTACATCCA +
Preference number: 2 (lower is better)
Translates to: GRRECFHTTSSHGDYCSGAKLVR*TVRLHP
Trigger: TGGATGTAATCTCACAGTCCACCTGACTAGTTTTGC...CCCTGAGCAGTAGTCGCCATGACTACTGGTTGTGTGAAAACACTCCCTTCTTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR CAA 90 bp CCGGTCCAAGAAGATAGAAAGCTCTGCTCACTGACTGGCTGTGGTTaGTTCTATGCAAAACTAGTCAGGTGGACTGTGAGATTACATCCA +
Preference number: 2 (lower is better)
Translates to: PVQEDRKLCSLTGCG*FYAKLVRWTVRLHP
Trigger: TGGATGTAATCTCACAGTCCACCTGACTAGTTTTGCATAGAACAAACCACAGCCAGTCAGTGAGCAGAGCTTTCTATCTTCTTGGACCGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR TCA 90 bp TCAGGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGCTGCTCTGTGTCCGTaGGATTCGGAAGTTTGTAAA +
Preference number: 2 (lower is better)
Translates to: SGCNRVTCKQTMFGIGLPAALCP*DSEVCK
Trigger: TTTACAAACTTCCGAATCTCACGGACACAGAGCAGC...TGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCCTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
3UTR-3UTR TCA 90 bp GGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTAGCTGCTCTGTGTCCGTaGGATTCGGAAGTTTGTAAA +
Preference number: 2 (lower is better)
Translates to: GCNRVTCKQTMFGIGLPVAALCP*DSEVCK
Trigger: TTTACAAACTTCCGAATCTCACGGACACAGAGCAGC...TACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
3UTR-3UTR TCA 90 bp TCTCCCCATGTATTGGACAGAGCAGCAAAATGTACGACAATGGCTGTATGTCAGTATGGACCTCATGCATaGCTTCTGAACACAGCATGC +
Preference number: 2 (lower is better)
Translates to: SPHVLDRAAKCTTMAVCQYGPHA*LLNTAC
Trigger: GCATGCTGTGTTCAGAAGTCATGCATGAGGTCCATA...CTGACATACAGCCATTGTCGTACATTTTGCTGCTCTGTCCAATACATGGGGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR TCA 90 bp GAGACACCTACCAGGTCTCACTCTACCGAAGCAGACACTTGCAAAATATGGGAGTTAACTAGTCTGACCTaGCTAGTTAACTGGGCAAGT +
Preference number: 2 (lower is better)
Translates to: ETPTRSHSTEADTCKIWELTSLT*LVNWAS
Trigger: ACTTGCCCAGTTAACTAGTCAGGTCAGACTAGTTAA...CTCCCATATTTTGCAAGTGTCTGCTTCGGTAGAGTGAGACCTGGTAGGTGTCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201438.4
3UTR-3UTR GCA 90 bp CCGGTATGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGCACAGCATGCCATCATaGAAGTCATTTCTACGCATT +
Preference number: 2 (lower is better)
Translates to: PVWNSYHFSKYSEQCRAGHSMPS*KSFLRI
Trigger: AATGCGTAGAAATGACTTGCATGATGGCATGCTGTG...CCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCATACCGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
3UTR-3UTR GCA 90 bp GGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCCTTCTGAACACAGCATaGCATCATGCAAGTCATTTC +
Preference number: 2 (lower is better)
Translates to: GTLTISPNTVNSAGLGPVLLNTA*HHASHF
Trigger: GAAATGACTTGCATGATGGCATGCTGTGTTCAGAAG...GACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
3UTR-3UTR GCA 90 bp GCCATTTCCGCATTAACAGAACAGGGAACGAGTGGAGGGGTAAGGAAGGAGATACTTCTGAACACAGCATaGCATCATGCAAGTCATTTC +
Preference number: 2 (lower is better)
Translates to: AISALTEQGTSGGVRKEILLNTA*HHASHF
Trigger: GAAATGACTTGCATGATGGCATGCTGTGTTCAGAAG...TATCTCCTTCCTTACCCCTCCACTCGTTCCCTGTTCTGTTAATGCGGAAATGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR GCA 90 bp ACTTTTCTAAAGATCAGGTATCGTTTAGGGCAGCATCAGGCTCCATGCACTCACGGTGTATGGACCTCATaGATGACTTCTGAACACAGC +
Preference number: 2 (lower is better)
Translates to: TFLKIRYRLGQHQAPCTHGVWTS*MTSEHS
Trigger: GCTGTGTTCAGAAGTCATGCATGAGGTCCATACACC...GTGAGTGCATGGAGCCTGATGCTGCCCTAAACGATACCTGATCTTTAGAAAAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR GCA 90 bp ACTTTTCTAAAGATCAGGTATCGTTTAGGGCAGCATCAGGCTCCATGCACTCACTGCAGCGGATCCATCTaGTTGTTTGGTTGGGTTGTT +
Preference number: 2 (lower is better)
Translates to: TFLKIRYRLGQHQAPCTHCSGSI*LFGWVV
Trigger: AACAACCCAACCAAACAAGCAGATGGATCCGCTGCA...GTGAGTGCATGGAGCCTGATGCTGCCCTAAACGATACCTGATCTTTAGAAAAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR CCA 90 bp CTCACTGACTGGCTGTGGTTTGTTCTATGCAAAACTAGTCAGGTGGACTGTGAGCACAATATTTGGAATTaGCCTGAGCAAGTCCTCCTC +
Preference number: 2 (lower is better)
Translates to: LTDWLWFVLCKTSQVDCEHNIWN*PEQVLL
Trigger: GAGGAGGACTTGCTCAGGCCAATTCCAAATATTGTG...CTCACAGTCCACCTGACTAGTTTTGCATAGAACAAACCACAGCCAGTCAGTGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR CCA 90 bp GCCATTTCCGCATTAACAGAACAGGGAACGAGTGGAGGGGTAAGGAAGGAGATAAACGAGCACAATATTTaGAATTGGCCTGAGCAAGTC +
Preference number: 2 (lower is better)
Translates to: AISALTEQGTSGGVRKEINEHNI*NWPEQV
Trigger: GACTTGCTCAGGCCAATTCCAAATATTGTGCTCGTT...TATCTCCTTCCTTACCCCTCCACTCGTTCCCTGTTCTGTTAATGCGGAAATGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR CAA 90 bp CTTTCGTCCCTTCCAGTTTCTCCGATTTTTGTTTACGGCTTACCTTaGACTTTAAATCAGCACCTGTATACGCTCTCACCGGGGTTTGCA +
Preference number: 2 (lower is better)
Translates to: LSSLPVSPIFVYGLP*TLNQHLYTLSPGFA
Trigger: TGCAAACCCCGGTGAGAGCGTATACAGGTGCTGATTTAAAGTCAAAGGTAAGCCGTAAACAAAAATCGGAGAAACTGGAAGGGACGAAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000201438.4
3UTR-3UTR TCA 90 bp TTTACAGTGACATTAATAGTACAAGCCATTCGGGGCCAGAGTCTCCCCATGTATCTCATGCATGACTTCTaGACACAGCATGCCATCATG +
Preference number: 2 (lower is better)
Translates to: FTVTLIVQAIRGQSLPMYLMHDF*TQHAIM
Trigger: CATGATGGCATGCTGTGTTCAGAAGTCATGCATGAG...ATACATGGGGAGACTCTGGCCCCGAATGGCTTGTACTATTAATGTCACTGTAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR TCA 90 bp GCTACAATACATAGCACTTTTATCTCTACCCCAGGGTCAGTTCTCCAGGATGAATATGGACCTCATGCATaGCTTCTGAACACAGCATGC +
Preference number: 2 (lower is better)
Translates to: ATIHSTFISTPGSVLQDEYGPHA*LLNTAC
Trigger: GCATGCTGTGTTCAGAAGTCATGCATGAGGTCCATA...TTCATCCTGGAGAACTGACCCTGGGGTAGAGATAAAAGTGCTATGTATTGTAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR TCA 90 bp GATAAAAGAACGGTTTCTGTAATCAGCCACAAGAGGAGGGCCTACAAGATCAGGTGGATGGGGTGTCTGTaGAATTTCATCTGTGTCTCT +
Preference number: 2 (lower is better)
Translates to: DKRTVSVISHKRRAYKIRWMGCL*NFICVS
Trigger: AGAGACACAGATGAAATTTCACAGACACCCCATCCA...CCTGATCTTGTAGGCCCTCCTCTTGTGGCTGATTACAGAAACCGTTCTTTTATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201438.4
3UTR-3UTR GCA 90 bp TTTACAGTGACATTAATAGTACAAGCCATTCGGGGCCAGAGTCTCCCCATGTATGGTGTATGGACCTCATaGATGACTTCTGAACACAGC +
Preference number: 2 (lower is better)
Translates to: FTVTLIVQAIRGQSLPMYGVWTS*MTSEHS
Trigger: GCTGTGTTCAGAAGTCATGCATGAGGTCCATACACC...ATACATGGGGAGACTCTGGCCCCGAATGGCTTGTACTATTAATGTCACTGTAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR CCA 90 bp CCTCTTCCTCAAGTCCAAAGAATACTTTGCCCTTCCCTGGCGCCTTTGTCTCTGATCTGCTTGTTTGGTTaGGTTGTTTTTGTTGGTAGT +
Preference number: 2 (lower is better)
Translates to: PLPQVQRILCPSLAPLSLICLFG*VVFVGS
Trigger: ACTACCAACAAAAACAACCCAACCAAACAAGCAGAT...CAGAGACAAAGGCGCCAGGGAAGGGCAAAGTATTCTTTGGACTTGAGGAAGAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR CCA 90 bp GCCATTTCCGCATTAACAGAACAGGGAACGAGTGGAGGGGTAAGGAAGGAGATACAAAATGTACGACAATaGCTGTATGTCAGAGATGTC +
Preference number: 2 (lower is better)
Translates to: AISALTEQGTSGGVRKEIQNVRQ*LYVRDV
Trigger: GACATCTCTGACATACAGCCATTGTCGTACATTTTG...TATCTCCTTCCTTACCCCTCCACTCGTTCCCTGTTCTGTTAATGCGGAAATGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR CCA 90 bp ACTTTTCTAAAGATCAGGTATCGTTTAGGGCAGCATCAGGCTCCATGCACTCACCTGCTGGTGATGGTGTaGTTCACAAGAAAGGATCAT +
Preference number: 2 (lower is better)
Translates to: TFLKIRYRLGQHQAPCTHLLVMV*FTRKDH
Trigger: ATGATCCTTTCTTGTGAACCACACCATCACCAGCAG...GTGAGTGCATGGAGCCTGATGCTGCCCTAAACGATACCTGATCTTTAGAAAAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR CAA 90 bp TATATCTATATATATATGTGCAGTGGTACTGGCTGCTGCCGCTCTTaGACAGGCTTCATGAATATTTGGCAAAGCCCTGCCACTTGCTCA +
Preference number: 2 (lower is better)
Translates to: YIYIYMCSGTGCCRS*TGFMNIWQSPATCS
Trigger: TGAGCAAGTGGCAGGGCTTTGCCAAATATTCATGAAGCCTGTCAAAGAGCGGCAGCAGCCAGTACCACTGCACATATATATATAGATATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR TCA 90 bp GTAGTGGTCAATTGGTTAATTATGTCTCCCTACCCAGAGGTGTATGAAAGACTTTATTTGGAATTGGCCTaGGCAAGTCCTCCTCAGCCT +
Preference number: 2 (lower is better)
Translates to: VVVNWLIMSPYPEVYERLYLELA*ASPPQP
Trigger: AGGCTGAGGAGGACTTGCTCAGGCCAATTCCAAATA...AAGTCTTTCATACACCTCTGGGTAGGGAGACATAATTAACCAATTGACCACTAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
3UTR-3UTR TCA 90 bp TGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTGTCATTTCTACGCATTaGACGAGCACAATATTTGGA +
Preference number: 2 (lower is better)
Translates to: WNSYHFSKYSEQCRAGSCVISTH*TSTIFG
Trigger: TCCAAATATTGTGCTCGTTCAATGCGTAGAAATGAC...ACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
3UTR-3UTR TCA 90 bp GTTCTTAGAAAGGTTATTTCCCCGGATGCAATGATTTTAGATGACAGAATCTTAAACGCATGGATGGAATaGGAGCCGCATGCCCGGCAA +
Preference number: 2 (lower is better)
Translates to: VLRKVISPDAMILDDRILNAWME*EPHARQ
Trigger: TTGCCGGGCATGCGGCTCTCATTCCATCCATGCGTT...TAAGATTCTGTCATCTAAAATCATTGCATCCGGGGAAATAACCTTTCTAAGAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201438.4
3UTR-3UTR GCA 90 bp CTCACTGACTGGCTGTGGTTTGTTCTATGCAAAACTAGTCAGGTGGACTGTGAGCCCACGTGGAGAAGATaGTGTTATGTTAAAGAAACA +
Preference number: 2 (lower is better)
Translates to: LTDWLWFVLCKTSQVDCEPTWRR*CYVKET
Trigger: TGTTTCTTTAACATAACAGCATCTTCTCCACGTGGG...CTCACAGTCCACCTGACTAGTTTTGCATAGAACAAACCACAGCCAGTCAGTGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR GCA 90 bp TGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCCCACGTGGAGAAGATaGTGTTATGTTAAAGAAACA +
Preference number: 2 (lower is better)
Translates to: WNSYHFSKYSEQCRAGSCPTWRR*CYVKET
Trigger: TGTTTCTTTAACATAACAGCATCTTCTCCACGTGGG...ACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
3UTR-3UTR GCA 90 bp TCTCCCCATGTATTGGACAGAGCAGCAAAATGTACGACAATGGCTGTATGTCAGCACAGCATGCCATCATaGAAGTCATTTCTACGCATT +
Preference number: 2 (lower is better)
Translates to: SPHVLDRAAKCTTMAVCQHSMPS*KSFLRI
Trigger: AATGCGTAGAAATGACTTGCATGATGGCATGCTGTG...CTGACATACAGCCATTGTCGTACATTTTGCTGCTCTGTCCAATACATGGGGAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR CCA 90 bp ACTTTTCTAAAGATCAGGTATCGTTTAGGGCAGCATCAGGCTCCATGCACTCACAACGAGCACAATATTTaGAATTGGCCTGAGCAAGTC +
Preference number: 2 (lower is better)
Translates to: TFLKIRYRLGQHQAPCTHNEHNI*NWPEQV
Trigger: GACTTGCTCAGGCCAATTCCAAATATTGTGCTCGTT...GTGAGTGCATGGAGCCTGATGCTGCCCTAAACGATACCTGATCTTTAGAAAAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR CCA 90 bp AATCATAACCATGAACAAGGCAGAAGTAAGGCCAGACCAGCTAGGTTGGTTGAAGTGTCTGTTGGTGTATaGACCTCATGCATGACTTCT +
Preference number: 2 (lower is better)
Translates to: NHNHEQGRSKARPARLVEVSVGV*TSCMTS
Trigger: AGAAGTCATGCATGAGGTCCATACACCAACAGACAC...TTCAACCAACCTAGCTGGTCTGGCCTTACTTCTGCCTTGTTCATGGTTATGATT
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR TCA 90 bp ACTTTTCTAAAGATCAGGTATCGTTTAGGGCAGCATCAGGCTCCATGCACTCACGTCATTTCTACGCATTaGACGAGCACAATATTTGGA +
Preference number: 2 (lower is better)
Translates to: TFLKIRYRLGQHQAPCTHVISTH*TSTIFG
Trigger: TCCAAATATTGTGCTCGTTCAATGCGTAGAAATGAC...GTGAGTGCATGGAGCCTGATGCTGCCCTAAACGATACCTGATCTTTAGAAAAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR TCA 90 bp GTAGTGGTCAATTGGTTAATTATGTCTCCCTACCCAGAGGTGTATGAAAGACTTTATGGACCTCATGCATaGCTTCTGAACACAGCATGC +
Preference number: 2 (lower is better)
Translates to: VVVNWLIMSPYPEVYERLYGPHA*LLNTAC
Trigger: GCATGCTGTGTTCAGAAGTCATGCATGAGGTCCATA...AAGTCTTTCATACACCTCTGGGTAGGGAGACATAATTAACCAATTGACCACTAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
3UTR-3UTR TCA 90 bp AATTTCATCTGTGTCTCTAGGGGACCAAAAACCCTCAAGAGATTTAGAACCACTAATTCCATGAGGCCATaGTTCGAGTGGTCCACATAC +
Preference number: 2 (lower is better)
Translates to: NFICVSRGPKTLKRFRTTNSMRP*FEWSTY
Trigger: GTATGTGGACCACTCGAATCATGGCCTCATGGAATT...AGTGGTTCTAAATCTCTTGAGGGTTTTTGGTCCCCTAGAGACACAGATGAAATT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000201438.4
3UTR-3UTR GCA 90 bp TTTACAGTGACATTAATAGTACAAGCCATTCGGGGCCAGAGTCTCCCCATGTATCTTCTGAACACAGCATaGCATCATGCAAGTCATTTC +
Preference number: 2 (lower is better)
Translates to: FTVTLIVQAIRGQSLPMYLLNTA*HHASHF
Trigger: GAAATGACTTGCATGATGGCATGCTGTGTTCAGAAG...ATACATGGGGAGACTCTGGCCCCGAATGGCTTGTACTATTAATGTCACTGTAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR GCA 90 bp GATAAAAGAACGGTTTCTGTAATCAGCCACAAGAGGAGGGCCTACAAGATCAGGAGTCTTTGGATAACATaGTGTTGGCAGAACATGCTA +
Preference number: 2 (lower is better)
Translates to: DKRTVSVISHKRRAYKIRSLWIT*CWQNML
Trigger: TAGCATGTTCTGCCAACAGCATGTTATCCAAAGACT...CCTGATCTTGTAGGCCCTCCTCTTGTGGCTGATTACAGAAACCGTTCTTTTATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201438.4
3UTR-3UTR CCA 90 bp GTAGTGGTCAATTGGTTAATTATGTCTCCCTACCCAGAGGTGTATGAAAGACTTGGATTGCAGCCGGTATaGAACTCTTACCATTTCTCC +
Preference number: 2 (lower is better)
Translates to: VVVNWLIMSPYPEVYERLGLQPV*NSYHFS
Trigger: GGAGAAATGGTAAGAGTTCCATACCGGCTGCAATCC...AAGTCTTTCATACACCTCTGGGTAGGGAGACATAATTAACCAATTGACCACTAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
3UTR-3UTR CCA 90 bp GAGAGCGTTATTCTACAAATGGAAGAGCCTACAGCCTTATCTCAGCCAACACTGCAAAATGTACGACAATaGCTGTATGTCAGAGATGTC +
Preference number: 2 (lower is better)
Translates to: ESVILQMEEPTALSQPTLQNVRQ*LYVRDV
Trigger: GACATCTCTGACATACAGCCATTGTCGTACATTTTG...CAGTGTTGGCTGAGATAAGGCTGTAGGCTCTTCCATTTGTAGAATAACGCTCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR CCA 90 bp AATCATAACCATGAACAAGGCAGAAGTAAGGCCAGACCAGCTAGGTTGGTTGAACTCACTGACTGGCTGTaGTTTGTTCTATGCAAAACT +
Preference number: 2 (lower is better)
Translates to: NHNHEQGRSKARPARLVELTDWL*FVLCKT
Trigger: AGTTTTGCATAGAACAAACCACAGCCAGTCAGTGAG...TTCAACCAACCTAGCTGGTCTGGCCTTACTTCTGCCTTGTTCATGGTTATGATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR TCA 90 bp TTTGGTTGGGTTGTTTTTGTTGGTAGTGGTCAATTGGTTAATTATGTCTCCCTATTTCTCCAAATACAGTaGACAGTGCAGGGCTGGGTC +
Preference number: 2 (lower is better)
Translates to: FGWVVFVGSGQLVNYVSLFLQIQ*TVQGWV
Trigger: GACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAA...TAGGGAGACATAATTAACCAATTGACCACTACCAACAAAAACAACCCAACCAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
3UTR-3UTR TCA 90 bp AATTTCATCTGTGTCTCTAGGGGACCAAAAACCCTCAAGAGATTTAGAACCACTATGCTACGGGAAGTCTaGAATCACAAGCAGTGGAAT +
Preference number: 2 (lower is better)
Translates to: NFICVSRGPKTLKRFRTTMLREV*NHKQWN
Trigger: ATTCCACTGCTTGTGATTTCAGACTTCCCGTAGCAT...AGTGGTTCTAAATCTCTTGAGGGTTTTTGGTCCCCTAGAGACACAGATGAAATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000201438.4
3UTR-3UTR CCA 90 bp AATCATAACCATGAACAAGGCAGAAGTAAGGCCAGACCAGCTAGGTTGGTTGAACAAAATGTACGACAATaGCTGTATGTCAGAGATGTC +
Preference number: 2 (lower is better)
Translates to: NHNHEQGRSKARPARLVEQNVRQ*LYVRDV
Trigger: GACATCTCTGACATACAGCCATTGTCGTACATTTTG...TTCAACCAACCTAGCTGGTCTGGCCTTACTTCTGCCTTGTTCATGGTTATGATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR CCA 90 bp GTAGTGGTCAATTGGTTAATTATGTCTCCCTACCCAGAGGTGTATGAAAGACTTAACGAGCACAATATTTaGAATTGGCCTGAGCAAGTC +
Preference number: 2 (lower is better)
Translates to: VVVNWLIMSPYPEVYERLNEHNI*NWPEQV
Trigger: GACTTGCTCAGGCCAATTCCAAATATTGTGCTCGTT...AAGTCTTTCATACACCTCTGGGTAGGGAGACATAATTAACCAATTGACCACTAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
3UTR CAA 90 bp AGTCTTAACCTCAAACATACCTTCCCTTCTAGATTTCAAGGCCGGTaGGTTCTTAGAAAGGTTATTTCCCCGGATGCAATGATTTTAGAT +
Preference number: 2 (lower is better)
Translates to: SLNLKHTFPSRFQGR*VLRKVISPDAMILD
Trigger: ATCTAAAATCATTGCATCCGGGGAAATAACCTTTCTAAGAACCAACCGGCCTTGAAATCTAGAAGGGAAGGTATGTTTGAGGTTAAGACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201438.4
3UTR-3UTR GCA 90 bp TTTGGTTGGGTTGTTTTTGTTGGTAGTGGTCAATTGGTTAATTATGTCTCCCTACTTCTGAACACAGCATaGCATCATGCAAGTCATTTC +
Preference number: 2 (lower is better)
Translates to: FGWVVFVGSGQLVNYVSLLLNTA*HHASHF
Trigger: GAAATGACTTGCATGATGGCATGCTGTGTTCAGAAG...TAGGGAGACATAATTAACCAATTGACCACTACCAACAAAAACAACCCAACCAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
3UTR CAA 90 bp TGTCTGTGTGTGTCTTTGTGTGTCTGTATGTGTGTGTGTTTCTTTTaGCTGCTTAGCTTAACTAATGTAAGAATGCAAATATTGTTTGCA +
Preference number: 2 (lower is better)
Translates to: CLCVSLCVCMCVCFF*LLSLTNVRMQILFA
Trigger: TGCAAACAATATTTGCATTCTTACATTAGTTAAGCTAAGCAGCAAAAAGAAACACACACACATACAGACACACAAAGACACACACAGACA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
3UTR CCA 72 bp GTGGATGGAAGGCAGGGCCAGCACGAGCTGGTGGACTaGAAGCTGCCGGGCAGCGTGCTTGCGCTAGCCTTG +
Preference number: 3 (lower is better)
Translates to: VDGRQGQHELVD*KLPGSVLALAL
Trigger: CAAGGCTAGCGCAAGCACGCTGCCCGGCAGCTTCCAGTCCACCAGCTCGTGCTGGCCCTGCCTTCCATCCAC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR CCA 72 bp AGAGCGAGGCGGGCAGAGAGTGGCTGGGTGGACAGATaGAAGGTGAGGGGCATTGCTGGGAGAGGTCTGATC +
Preference number: 3 (lower is better)
Translates to: RARRAESGWVDR*KVRGIAGRGLI
Trigger: GATCAGACCTCTCCCAGCAATGCCCCTCACCTTCCATCTGTCCACCCAGCCACTCTCTGCCCGCCTCGCTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR GCA 72 bp CGCTTCAGGGGCCCTGAGGGGGAGCTTGTCTCTCTGTaGGCAGCTTCAGATGCCCAAGTGGCTCATTTCCAG +
Preference number: 3 (lower is better)
Translates to: RFRGPEGELVSL*AASDAQVAHFQ
Trigger: CTGGAAATGAGCCACTTGGGCATCTGAAGCTGCGCACAGAGAGACAAGCTCCCCCTCAGGGCCCCTGAAGCG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR CCA 72 bp CCATTCTGGCAGGCAGTCGTGGGTTGGAAGAGAAGGTaGAGGGACCGGTTAGACAGCTCAGGAGCCCACGTC +
Preference number: 3 (lower is better)
Translates to: PFWQAVVGWKRR*RDRLDSSGAHV
Trigger: GACGTGGGCTCCTGAGCTGTCTAACCGGTCCCTCCACCTTCTCTTCCAACCCACGACTGCCTGCCAGAATGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096198.10
ENSMUST00000200959.2
3UTR-3UTR CAA 90 bp CTATGTCGCTTCAGGGGCCCTGAGGGGGAGCTTGTCTCTCTGTGCGCAGCTTCATCTGAGCTGGGAGAGTaGGACAGTGTCTACCGGTCC +
Preference number: 3 (lower is better)
Translates to: LCRFRGPEGELVSLCAASSELGE*DSVYRS
Trigger: GGACCGGTAGACACTGTCCAACTCTCCCAGCTCAGA...TGAAGCTGCGCACAGAGAGACAAGCTCCCCCTCAGGGCCCCTGAAGCGACATAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR TCA 72 bp GGGAAAGGAGAGACATGGTGGTCCAGCTGCTGCAGATaGAGGCCTGCCTGGGGGTTACCACCCTTGTGGTTC +
Preference number: 3 (lower is better)
Translates to: GKGETWWSSCCR*RPAWGLPPLWF
Trigger: GAACCACAAGGGTGGTAACCCCCAGGCAGGCCTTCATCTGCAGCAGCTGGACCACCATGTCTCTCCTTTCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000201438.4
3UTR GCA 72 bp CTGGCTGGAGGGATATGGCAGAAGCAGGAAGAACCGTaGAGCCAGGAGCTTGTGACAACCCCTCTGCAGGAC +
Preference number: 3 (lower is better)
Translates to: LAGGIWQKQEEP*SQELVTTPLQD
Trigger: GTCCTGCAGAGGGGTTGTCACAAGCTCCTGGCTGCACGGTTCTTCCTGCTTCTGCCATATCCCTCCAGCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR GCA 72 bp AGAGCCGCATGCCCGGCAAGCAAGGTCCGAGACGTCTaGCTCAGGACCAAAGGGCCATTCCAGAGAATTCTT +
Preference number: 3 (lower is better)
Translates to: RAACPASKVRDV*LRTKGPFQRIL
Trigger: AAGAATTCTCTGGAATGGCCCTTTGGTCCTGAGGCAGACGTCTCGGACCTTGCTTGCCGGGCATGCGGCTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201438.4
3UTR TCA 72 bp GGCAGAAGCAGGAAGAACCGTGCAGCCAGGAGCTTGTaGCAACCCCTCTGCAGGACAGGGCAGTTCAGAATA +
Preference number: 3 (lower is better)
Translates to: GRSRKNRAARSL*QPLCRTGQFRI
Trigger: TATTCTGAACTGCCCTGTCCTGCAGAGGGGTTGTCACAAGCTCCTGGCTGCACGGTTCTTCCTGCTTCTGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR GCA 72 bp CAGGGTCCTTTGTCCCCAGCAGGTCACCGCTCAGGATaGAACCGTGTCACGTGTAAGCAGACTATGTTTGGT +
Preference number: 3 (lower is better)
Translates to: QGPLSPAGHRSG*NRVTCKQTMFG
Trigger: ACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCCTGAGCGGTGACCTGCTGGGGACAAAGGACCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
3UTR GCA 72 bp ACAAGAGGAGGGCCTACAAGATCAGGCGATGGTGCTTaGTCAGCACCCTGTTTCCATAGAACCCAGGGGACA +
Preference number: 3 (lower is better)
Translates to: TRGGPTRSGDGA*SAPCFHRTQGT
Trigger: TGTCCCCTGGGTTCTATGGAAACAGGGTGCTGAGCAAGCACCATCGCCTGATCTTGTAGGCCCTCCTCTTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201438.4
3UTR CCA 72 bp TTTTCCACTCTGCCATTCTGGCAGGCAGTCGTGGGTTaGAAGAGAAGGTGGAGGGACCGGTTAGACAGCTCA +
Preference number: 3 (lower is better)
Translates to: FSTLPFWQAVVG*KRRWRDRLDSS
Trigger: TGAGCTGTCTAACCGGTCCCTCCACCTTCTCTTCCAACCCACGACTGCCTGCCAGAATGGCAGAGTGGAAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096198.10
ENSMUST00000200959.2
3UTR-3UTR CAA 90 bp CTATGTCGCTTCAGGGGCCCTGAGGGGGAGCTTGTCTCTCTGTGCGCAGCTTCAAGCGGATCCATCTGCTaGTTTGGTTGGGTTGTTTTT +
Preference number: 3 (lower is better)
Translates to: LCRFRGPEGELVSLCAASSGSIC*FGWVVF
Trigger: AAAAACAACCCAACCAAACAAGCAGATGGATCCGCT...TGAAGCTGCGCACAGAGAGACAAGCTCCCCCTCAGGGCCCCTGAAGCGACATAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR CAA 90 bp CTATGTCGCTTCAGGGGCCCTGAGGGGGAGCTTGTCTCTCTGTGCGCAGCTTCACTGACTGGCTGTGGTTaGTTCTATGCAAAACTAGTC +
Preference number: 3 (lower is better)
Translates to: LCRFRGPEGELVSLCAASLTGCG*FYAKLV
Trigger: GACTAGTTTTGCATAGAACAAACCACAGCCAGTCAG...TGAAGCTGCGCACAGAGAGACAAGCTCCCCCTCAGGGCCCCTGAAGCGACATAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR CAA 90 bp GATGTAGAACTCTCAGTTCCTTCTCCAGCATCATGTCTGCCTGGATGCTCCCATGCAGGCAGTCGTGGGTaGGAAGAGAAGGTGGAGGGA +
Preference number: 3 (lower is better)
Translates to: DVELSVPSPASCLPGCSHAGSRG*EEKVEG
Trigger: TCCCTCCACCTTCTCTTCCAACCCACGACTGCCTGC...ATGGGAGCATCCAGGCAGACATGATGCTGGAGAAGGAACTGAGAGTTCTACATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096198.10
3UTR TCA 72 bp CAGCTTCAGATGCCCAAGTGGCTCATTTCCAGATGGTaGGAGCAGATCACTCAGACTCGGCTTTCCTGCTCC +
Preference number: 3 (lower is better)
Translates to: QLQMPKWLISRW*EQITQTRLSCS
Trigger: GGAGCAGGAAAGCCGAGTCTGAGTGATCTGCTCTCACCATCTGGAAATGAGCCACTTGGGCATCTGAAGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR TCA 72 bp CTAGAGTGGACTAGAGTGGGCACTTCAAGATCCTCCTaGGTGTTCCTAGACCAGGAGACATGGCCTGGAGAG +
Preference number: 3 (lower is better)
Translates to: LEWTRVGTSRSS*VFLDQETWPGE
Trigger: CTCTCCAGGCCATGTCTCCTGGTCTAGGAACACTCAGGAGGATCTTGAAGTGCCCACTCTAGTCCACTCTAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR GCA 72 bp GGTCAGCTCCTGTTTTGTGCTGTTTGCGATGTTGCCTaGAGGTGGCGCTCTAGAATTGTCCTAGCTGTGGTG +
Preference number: 3 (lower is better)
Translates to: GQLLFCAVCDVA*RWRSRIVLAVV
Trigger: CACCACAGCTAGGACAATTCTAGAGCGCCACCTGCAGGCAACATCGCAAACAGCACAAAACAGGAGCTGACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR GCA 72 bp TTTTATTTCAAACGCATGGATGGAATGAGAGCCGCATaGCCGGCAAGCAAGGTCCGAGACGTCTGCCTCAGG +
Preference number: 3 (lower is better)
Translates to: FYFKRMDGMRAA*PASKVRDVCLR
Trigger: CCTGAGGCAGACGTCTCGGACCTTGCTTGCCGGGCATGCGGCTCTCATTCCATCCATGCGTTTGAAATAAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201438.4
3UTR CCA 72 bp CTCCTGTTTTGTGCTGTTTGCGATGTTGCCTGCAGGTaGCGCTCTAGAATTGTCCTAGCTGTGGTGACACGG +
Preference number: 3 (lower is better)
Translates to: LLFCAVCDVACR*RSRIVLAVVTR
Trigger: CCGTGTCACCACAGCTAGGACAATTCTAGAGCGCCACCTGCAGGCAACATCGCAAACAGCACAAAACAGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR CCA 72 bp GGCTGCTGCCGCTCTTTGACAGGCTTCATGAATATTTaGCAAAGCCCTGCCACTTGCTCACGCAATGAGGAC +
Preference number: 3 (lower is better)
Translates to: GCCRSLTGFMNI*QSPATCSRNED
Trigger: GTCCTCATTGCGTGAGCAAGTGGCAGGGCTTTGCCAAATATTCATGAAGCCTGTCAAAGAGCGGCAGCAGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR CAA 90 bp CCTCTTCCTCAAGTCCAAAGAATACTTTGCCCTTCCCTGGCGCCTTTGTCTCTGCTTGGCTTTGAGACCTaGTGGTCAGCTGAGACACCC +
Preference number: 3 (lower is better)
Translates to: PLPQVQRILCPSLAPLSLLGFET*WSAETP
Trigger: GGGTGTCTCAGCTGACCACAAGGTCTCAAAGCCAAG...CAGAGACAAAGGCGCCAGGGAAGGGCAAAGTATTCTTTGGACTTGAGGAAGAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR TCA 72 bp GTCAGGAGCTGGGGTAGGAGGGTCAGATCTAATCGCTaGACATTACTAGCATGGCGCTTGGTGTTCCTAGCA +
Preference number: 3 (lower is better)
Translates to: VRSWGRRVRSNR*TLLAWRLVFLA
Trigger: TGCTAGGAACACCAAGCGCCATGCTAGTAATGTTCAGCGATTAGATCTGACCCTCCTACCCCAGCTCCTGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR GCA 72 bp ACATCTGAGAAAAGAAAGAGGCATCGTTCCAGAAGATaGCCAGGGTTCAGGTCACCATGTCCGGACCCATGG +
Preference number: 3 (lower is better)
Translates to: TSEKRKRHRSRR*PGFRSPCPDPW
Trigger: CCATGGGTCCGGACATGGTGACCTGAACCCTGGGCATCTTCTGGAACGATGCCTCTTTCTTTTCTCAGATGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR GCA 72 bp CTCTCAGTTCCTTCTCCAGCATCATGTCTGCCTGGATaGTCCCATGCTTCTGGCCATGATGATACTGGACTG +
Preference number: 3 (lower is better)
Translates to: LSVPSPASCLPG*SHASGHDDTGL
Trigger: CAGTCCAGTATCATCATGGCCAGAAGCATGGGAGCATCCAGGCAGACATGATGCTGGAGAAGGAACTGAGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096198.10
3UTR GCA 72 bp AGGGCCATTCCAGAGAATTCTTCTCAGGGGGAAGCATaGAGAGCGAGACAAGGCATATCAGATGTGCCGATC +
Preference number: 3 (lower is better)
Translates to: RAIPENSSQGEA*RARQGISDVPI
Trigger: GATCGGCACATCTGATATGCCTTGTCTCGCTCTGCATGCTTCCCCCTGAGAAGAATTCTCTGGAATGGCCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000201438.4
3UTR GCA 72 bp TCCTCGACCCTAGCTAAAGCCCAGACGGCATCAACATaGCTTTGTCTCTGCCTCGTTGCTGTCAGTCTTAAC +
Preference number: 3 (lower is better)
Translates to: SSTLAKAQTAST*LCLCLVAVSLN
Trigger: GTTAAGACTGACAGCAACGAGGCAGAGACAAAGGCATGTTGATGCCGTCTGGGCTTTAGCTAGGGTCGAGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201438.4
3UTR-3UTR CAA 90 bp GCCATTTCCGCATTAACAGAACAGGGAACGAGTGGAGGGGTAAGGAAGGAGATACTTGGCTTTGAGACCTaGTGGTCAGCTGAGACACCC +
Preference number: 3 (lower is better)
Translates to: AISALTEQGTSGGVRKEILGFET*WSAETP
Trigger: GGGTGTCTCAGCTGACCACAAGGTCTCAAAGCCAAG...TATCTCCTTCCTTACCCCTCCACTCGTTCCCTGTTCTGTTAATGCGGAAATGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR CAA 90 bp GCCATTTCCGCATTAACAGAACAGGGAACGAGTGGAGGGGTAAGGAAGGAGATAGAGAGGTTAAGTGACTaGCCCAAGGCCACACAGCGA +
Preference number: 3 (lower is better)
Translates to: AISALTEQGTSGGVRKEIERLSD*PKATQR
Trigger: TCGCTGTGTGGCCTTGGGCAAGTCACTTAACCTCTC...TATCTCCTTCCTTACCCCTCCACTCGTTCCCTGTTCTGTTAATGCGGAAATGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR CAA 90 bp ATCTGTGTCTCTAGGGGACCAAAAACCCTCAAGAGATTTAGAACCACTGAGCTACGCTCTCACCGGGGTTaGCACTTGAGAGCGACCCCT +
Preference number: 3 (lower is better)
Translates to: ICVSRGPKTLKRFRTTELRSHRG*HLRATP
Trigger: AGGGGTCGCTCTCAAGTGCAAACCCCGGTGAGAGCG...TAGCTCAGTGGTTCTAAATCTCTTGAGGGTTTTTGGTCCCCTAGAGACACAGAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000201438.4
3UTR-3UTR CAA 90 bp GGAAGAAGGGAGTGTTTTCACACAACCAGTAGTCATGGCGACTACTGCTCAGGGTGTACACTGAGAGGATaGCAGCCGGTATGGAACTCT +
Preference number: 3 (lower is better)
Translates to: GRRECFHTTSSHGDYCSGCTLRG*QPVWNS
Trigger: AGAGTTCCATACCGGCTGCAATCCTCTCAGTGTACA...CCCTGAGCAGTAGTCGCCATGACTACTGGTTGTGTGAAAACACTCCCTTCTTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR TCA 72 bp ATATTTGGAATTGGCCTGAGCAAGTCCTCCTCAGCCTaGAACCCTGATTGTTTCCCCCACCGTCTCCAAACC +
Preference number: 3 (lower is better)
Translates to: IFGIGLSKSSSA*NPDCFPHRLQT
Trigger: GGTTTGGAGACGGTGGGGGAAACAATCAGGGTTTCAGGCTGAGGAGGACTTGCTCAGGCCAATTCCAAATAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
3UTR TCA 72 bp GTTCGATGCCTGTTAACTGCGGGTGTGAACTGCTGGTaGTGGTGTGGTTCACAAGAAAGGATCATGGAGTGG +
Preference number: 3 (lower is better)
Translates to: VRCLLTAGVNCW*WCGSQERIMEW
Trigger: CCACTCCATGATCCTTTCTTGTGAACCACACCATCACCAGCAGTTCACACCCGCAGTTAACAGGCATCGAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR CCA 72 bp CCTGTTAACTGCGGGTGTGAACTGCTGGTGATGGTGTaGTTCACAAGAAAGGATCATGGAGTGGGACAGAGA +
Preference number: 3 (lower is better)
Translates to: PVNCGCELLVMV*FTRKDHGVGQR
Trigger: TCTCTGTCCCACTCCATGATCCTTTCTTGTGAACCACACCATCACCAGCAGTTCACACCCGCAGTTAACAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR CAA 90 bp CTCCCTACCCAGAGGTGTATGAAAGACTTGTACACTGAGAGGATTGCAGCCGGTGGCAGCCGCCTCTGTTaGTATCCTGTTAAGTTTACT +
Preference number: 3 (lower is better)
Translates to: LPTQRCMKDLYTERIAAGGSRLC*YPVKFT
Trigger: AGTAAACTTAACAGGATACAAACAGAGGCGGCTGCC...ACCGGCTGCAATCCTCTCAGTGTACAAGTCTTTCATACACCTCTGGGTAGGGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
3UTR-3UTR CAA 90 bp CTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCCGAAGGGGCAGCCGCCTCTGTTaGTATCCTGTTAAGTTTACT +
Preference number: 3 (lower is better)
Translates to: LTISPNTVNSAGLGPVRRGSRLC*YPVKFT
Trigger: AGTAAACTTAACAGGATACAAACAGAGGCGGCTGCC...CCTTCGGACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
3UTR-3UTR CAA 90 bp CCTCTTCCTCAAGTCCAAAGAATACTTTGCCCTTCCCTGGCGCCTTTGTCTCTGAGGCTTCATGAATATTaGGCAAAGCCCTGCCACTTG +
Preference number: 3 (lower is better)
Translates to: PLPQVQRILCPSLAPLSLRLHEY*AKPCHL
Trigger: CAAGTGGCAGGGCTTTGCCAAATATTCATGAAGCCT...CAGAGACAAAGGCGCCAGGGAAGGGCAAAGTATTCTTTGGACTTGAGGAAGAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR CAA 90 bp GACACTGCTTTTTCCACTCTGCCATTCTGGCAGGCAGTCGTGGGTTGGAAGAGAAGACAGGAGGGGAGTTaGCTTTGTTCCATAAATCCA +
Preference number: 3 (lower is better)
Translates to: DTAFSTLPFWQAVVGWKRRQEGS*LCSINP
Trigger: TGGATTTATGGAACAAAGCAAACTCCCCTCCTGTCT...TCTCTTCCAACCCACGACTGCCTGCCAGAATGGCAGAGTGGAAAAAGCAGTGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000096198.10
ENSMUST00000200959.2
3UTR-3UTR CAA 90 bp AAGAACAGCAGTGATGAGCCAGGCTGGGGAGAGCATCTGCTGCCCCAGTTAGTGAGATTTCAAGGCCGGTaGGTTCTTAGAAAGGTTATT +
Preference number: 3 (lower is better)
Translates to: KNSSDEPGWGEHLLPQLVRFQGR*VLRKVI
Trigger: AATAACCTTTCTAAGAACCAACCGGCCTTGAAATCT...CACTAACTGGGGCAGCAGATGCTCTCCCCAGCCTGGCTCATCACTGCTGTTCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201438.4
3UTR GCA 72 bp AGAATAACCACAGGTCAGCTCCTGTTTTGTGCTGTTTaGGATGTTGCCTGCAGGTGGCGCTCTAGAATTGTC +
Preference number: 3 (lower is better)
Translates to: RITTGQLLFCAV*DVACRWRSRIV
Trigger: GACAATTCTAGAGCGCCACCTGCAGGCAACATCGCAAACAGCACAAAACAGGAGCTGACCTGTGGTTATTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR GCA 72 bp GCTAAAGCCCAGACGGCATCAACATGCCTTTGTCTCTaGCTCGTTGCTGTCAGTCTTAACCTCAAACATACC +
Preference number: 3 (lower is better)
Translates to: AKAQTASTCLCL*LVAVSLNLKHT
Trigger: GGTATGTTTGAGGTTAAGACTGACAGCAACGAGGCAGAGACAAAGGCATGTTGATGCCGTCTGGGCTTTAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201438.4
3UTR CCA 72 bp ATGCGAGGGACAGGATTGCTAGTGTCTGTTGGTGTATaGACCTCATGCATGACTTCTGAACACAGCATGCCA +
Preference number: 3 (lower is better)
Translates to: MRGTGLLVSVGV*TSCMTSEHSMP
Trigger: TGGCATGCTGTGTTCAGAAGTCATGCATGAGGTCCATACACCAACAGACACTAGCAATCCTGTCCCTCGCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
3UTR CCA 72 bp CTTTCTCACAAAAGCCGTCGTAGAAACAAGACCAAGTaGGCTCTGTCCAGAGGCAGCTCCATCTTTCCATCA +
Preference number: 3 (lower is better)
Translates to: LSHKSRRRNKTK*ALSRGSSIFPS
Trigger: TGATGGAAAGATGGAGCTGCCTCTGGACAGAGCCCACTTGGTCTTGTTTCTACGACGGCTTTTGTGAGAAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR CCA 72 bp GGATGGAACACAGTTCTGTCCCTCTTCTGGAACCACTaGACCACGCTCCCCTTTACCTATGTACATTCTTCA +
Preference number: 3 (lower is better)
Translates to: GWNTVLSLFWNH*TTLPFTYVHSS
Trigger: TGAAGAATGTACATAGGTAAAGGGGAGCGTGGTCCAGTGGTTCCAGAAGAGGGACAGAACTGTGTTCCATCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR CAA 90 bp TTTGGTTGGGTTGTTTTTGTTGGTAGTGGTCAATTGGTTAATTATGTCTCCCTAAGGGAGCAGGGTCCTTaGTCCCCAGCAGGTCACCGC +
Preference number: 3 (lower is better)
Translates to: FGWVVFVGSGQLVNYVSLREQGP*SPAGHR
Trigger: GCGGTGACCTGCTGGGGACAAAGGACCCTGCTCCCT...TAGGGAGACATAATTAACCAATTGACCACTACCAACAAAAACAACCCAACCAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
3UTR-3UTR CAA 90 bp GGAAGAAGGGAGTGTTTTCACACAACCAGTAGTCATGGCGACTACTGCTCAGGGAGCGGATCCATCTGCTaGTTTGGTTGGGTTGTTTTT +
Preference number: 3 (lower is better)
Translates to: GRRECFHTTSSHGDYCSGSGSIC*FGWVVF
Trigger: AAAAACAACCCAACCAAACAAGCAGATGGATCCGCT...CCCTGAGCAGTAGTCGCCATGACTACTGGTTGTGTGAAAACACTCCCTTCTTCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR TCA 72 bp TTCCAGTACAGCATCTCCGCAGCTGCTCTGTGTCCGTaGGATTCGGAAGTTTGTAAACAAGCTTTCACTTGC +
Preference number: 3 (lower is better)
Translates to: FQYSISAAALCP*DSEVCKQAFTC
Trigger: GCAAGTGAAAGCTTGTTTACAAACTTCCGAATCTCACGGACACAGAGCAGCTGCGGAGATGCTGTACTGGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
3UTR GCA 72 bp GTTGATTTGGTTCAGAGAGACTTTCTGGCATTCGAGTaGAGCATCTTGGCTTTGAGACCTTGTGGTCAGCTG +
Preference number: 3 (lower is better)
Translates to: VDLVQRDFLAFE*SILALRPCGQL
Trigger: CAGCTGACCACAAGGTCTCAAAGCCAAGATGCTGCACTCGAATGCCAGAAAGTCTCTCTGAACCAAATCAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR GCA 72 bp CAGGAAACCATAACTAAGACACTGCTTTTTCCACTCTaGCATTCTGGCAGGCAGTCGTGGGTTGGAAGAGAA +
Preference number: 3 (lower is better)
Translates to: QETITKTLLFPL*HSGRQSWVGRE
Trigger: TTCTCTTCCAACCCACGACTGCCTGCCAGAATGGCAGAGTGGAAAAAGCAGTGTCTTAGTTATGGTTTCCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000096198.10
3UTR GCA 72 bp AGCCAGCCCCAATTAAACATTGTCCTTTGTAAATGCTaGTGCGGTCATGGTGTCTCTTCACAGCCAGGAAAC +
Preference number: 3 (lower is better)
Translates to: SQPQLNIVLCKC*CGHGVSSQPGN
Trigger: GTTTCCTGGCTGTGAAGAGACACCATGACCGCAGCAGCATTTACAAAGGACAATGTTTAATTGGGGCTGGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096198.10
3UTR CCA 72 bp CAACCAGTAGTCATGGCGACTACTGCTCAGGGGCTTTaGCTCTGCGTTTTAAATGAACAGCATCACATGACT +
Preference number: 3 (lower is better)
Translates to: QPVVMATTAQGL*LCVLNEQHHMT
Trigger: AGTCATGTGATGCTGTTCATTTAAAACGCAGAGCCAAAGCCCCTGAGCAGTAGTCGCCATGACTACTGGTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR CAA 90 bp TGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTGGCAGCCGCCTCTGTTaGTATCCTGTTAAGTTTACT +
Preference number: 3 (lower is better)
Translates to: WNSYHFSKYSEQCRAGSCGSRLC*YPVKFT
Trigger: AGTAAACTTAACAGGATACAAACAGAGGCGGCTGCC...ACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
3UTR-3UTR CAA 90 bp CTCACTGACTGGCTGTGGTTTGTTCTATGCAAAACTAGTCAGGTGGACTGTGAGGGCAGCCGCCTCTGTTaGTATCCTGTTAAGTTTACT +
Preference number: 3 (lower is better)
Translates to: LTDWLWFVLCKTSQVDCEGSRLC*YPVKFT
Trigger: AGTAAACTTAACAGGATACAAACAGAGGCGGCTGCC...CTCACAGTCCACCTGACTAGTTTTGCATAGAACAAACCACAGCCAGTCAGTGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR CAA 90 bp ACTTTTCTAAAGATCAGGTATCGTTTAGGGCAGCATCAGGCTCCATGCACTCACTGTACACTGAGAGGATaGCAGCCGGTATGGAACTCT +
Preference number: 3 (lower is better)
Translates to: TFLKIRYRLGQHQAPCTHCTLRG*QPVWNS
Trigger: AGAGTTCCATACCGGCTGCAATCCTCTCAGTGTACA...GTGAGTGCATGGAGCCTGATGCTGCCCTAAACGATACCTGATCTTTAGAAAAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR CAA 90 bp GAGAGCGTTATTCTACAAATGGAAGAGCCTACAGCCTTATCTCAGCCAACACTGTGTACACTGAGAGGATaGCAGCCGGTATGGAACTCT +
Preference number: 3 (lower is better)
Translates to: ESVILQMEEPTALSQPTLCTLRG*QPVWNS
Trigger: AGAGTTCCATACCGGCTGCAATCCTCTCAGTGTACA...CAGTGTTGGCTGAGATAAGGCTGTAGGCTCTTCCATTTGTAGAATAACGCTCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR CAA 90 bp GGAAGAAGGGAGTGTTTTCACACAACCAGTAGTCATGGCGACTACTGCTCAGGGTTGGTTGGGTTGTTTTaGTTGGTAGTGGTCAATTGG +
Preference number: 3 (lower is better)
Translates to: GRRECFHTTSSHGDYCSGLVGLF*LVVVNW
Trigger: CCAATTGACCACTACCAACAAAAACAACCCAACCAA...CCCTGAGCAGTAGTCGCCATGACTACTGGTTGTGTGAAAACACTCCCTTCTTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR CAA 90 bp GGAAGAAGGGAGTGTTTTCACACAACCAGTAGTCATGGCGACTACTGCTCAGGGGATCCATCTGCTTGTTaGGTTGGGTTGTTTTTGTTG +
Preference number: 3 (lower is better)
Translates to: GRRECFHTTSSHGDYCSGDPSAC*VGLFLL
Trigger: CAACAAAAACAACCCAACCAAACAAGCAGATGGATC...CCCTGAGCAGTAGTCGCCATGACTACTGGTTGTGTGAAAACACTCCCTTCTTCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR CAA 90 bp GGAAGAAGGGAGTGTTTTCACACAACCAGTAGTCATGGCGACTACTGCTCAGGGGTTGGGTTGTTTTTGTaGGTAGTGGTCAATTGGTTA +
Preference number: 3 (lower is better)
Translates to: GRRECFHTTSSHGDYCSGVGLFL*VVVNWL
Trigger: TAACCAATTGACCACTACCAACAAAAACAACCCAAC...CCCTGAGCAGTAGTCGCCATGACTACTGGTTGTGTGAAAACACTCCCTTCTTCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR CAA 90 bp CTCACTGACTGGCTGTGGTTTGTTCTATGCAAAACTAGTCAGGTGGACTGTGAGAGCGGATCCATCTGCTaGTTTGGTTGGGTTGTTTTT +
Preference number: 3 (lower is better)
Translates to: LTDWLWFVLCKTSQVDCESGSIC*FGWVVF
Trigger: AAAAACAACCCAACCAAACAAGCAGATGGATCCGCT...CTCACAGTCCACCTGACTAGTTTTGCATAGAACAAACCACAGCCAGTCAGTGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR CAA 90 bp ACTTTTCTAAAGATCAGGTATCGTTTAGGGCAGCATCAGGCTCCATGCACTCACGAGTCTCCCCATGTATaGGACAGAGCAGCAAAATGT +
Preference number: 3 (lower is better)
Translates to: TFLKIRYRLGQHQAPCTHESPHV*DRAAKC
Trigger: ACATTTTGCTGCTCTGTCCAATACATGGGGAGACTC...GTGAGTGCATGGAGCCTGATGCTGCCCTAAACGATACCTGATCTTTAGAAAAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR CAA 90 bp ACTTTTCTAAAGATCAGGTATCGTTTAGGGCAGCATCAGGCTCCATGCACTCACAGGCTTCATGAATATTaGGCAAAGCCCTGCCACTTG +
Preference number: 3 (lower is better)
Translates to: TFLKIRYRLGQHQAPCTHRLHEY*AKPCHL
Trigger: CAAGTGGCAGGGCTTTGCCAAATATTCATGAAGCCT...GTGAGTGCATGGAGCCTGATGCTGCCCTAAACGATACCTGATCTTTAGAAAAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR TCA 72 bp CTACGCATTGAACGAGCACAATATTTGGAATTGGCCTaGGCAAGTCCTCCTCAGCCTGAAACCCTGATTGTT +
Preference number: 3 (lower is better)
Translates to: LRIERAQYLELA*ASPPQPETLIV
Trigger: AACAATCAGGGTTTCAGGCTGAGGAGGACTTGCTCAGGCCAATTCCAAATATTGTGCTCGTTCAATGCGTAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
3UTR TCA 72 bp TCTCCCTACCCAGAGGTGTATGAAAGACTTGTACACTaGGAGGATTGCAGCCGGTATGGAACTCTTACCATT +
Preference number: 3 (lower is better)
Translates to: SPYPEVYERLVH*EDCSRYGTLTI
Trigger: AATGGTAAGAGTTCCATACCGGCTGCAATCCTCTCAGTGTACAAGTCTTTCATACACCTCTGGGTAGGGAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
3UTR TCA 72 bp GGAATGGGGGTGGATATTAAAGACACTGTAATTCCATaGGGCCATGATTCGAGTGGTCCACATACAGAGGCA +
Preference number: 3 (lower is better)
Translates to: GMGVDIKDTVIP*GHDSSGPHTEA
Trigger: TGCCTCTGTATGTGGACCACTCGAATCATGGCCTCATGGAATTACAGTGTCTTTAATATCCACCCCCATTCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000201438.4
3UTR GCA 72 bp GGACAGTGTCTACCGGTCCAAGAAGATAGAAAGCTCTaGTCACTGACTGGCTGTGGTTTGTTCTATGCAAAA +
Preference number: 3 (lower is better)
Translates to: GQCLPVQEDRKL*SLTGCGLFYAK
Trigger: TTTTGCATAGAACAAACCACAGCCAGTCAGTGAGCAGAGCTTTCTATCTTCTTGGACCGGTAGACACTGTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR GCA 72 bp CAGCCCCAATTAAACATTGTCCTTTGTAAATGCTGCTaGGGTCATGGTGTCTCTTCACAGCCAGGAAACCAT +
Preference number: 3 (lower is better)
Translates to: QPQLNIVLCKCC*GHGVSSQPGNH
Trigger: ATGGTTTCCTGGCTGTGAAGAGACACCATGACCGCAGCAGCATTTACAAAGGACAATGTTTAATTGGGGCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096198.10
3UTR CCA 72 bp CTCTTCCTCAAGTCCAAAGAATACTTTGCCCTTCCCTaGCGCCTTTGTCTCTGTATCTCAGAACGCTTTACA +
Preference number: 3 (lower is better)
Translates to: LFLKSKEYFALP*RLCLCISERFT
Trigger: TGTAAAGCGTTCTGAGATACAGAGACAAAGGCGCCAGGGAAGGGCAAAGTATTCTTTGGACTTGAGGAAGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR CAA 90 bp CTCACTGACTGGCTGTGGTTTGTTCTATGCAAAACTAGTCAGGTGGACTGTGAGGATCCATCTGCTTGTTaGGTTGGGTTGTTTTTGTTG +
Preference number: 3 (lower is better)
Translates to: LTDWLWFVLCKTSQVDCEDPSAC*VGLFLL
Trigger: CAACAAAAACAACCCAACCAAACAAGCAGATGGATC...CTCACAGTCCACCTGACTAGTTTTGCATAGAACAAACCACAGCCAGTCAGTGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR TCA 72 bp GATTCCCTCCATACTATGCTCAGGGAGAGTTTGTGTTaGTTTGGTTCAGAGAGACTTTCTGGCATTCGAGTG +
Preference number: 3 (lower is better)
Translates to: DSLHTMLRESLC*FGSERLSGIRV
Trigger: CACTCGAATGCCAGAAAGTCTCTCTGAACCAAATCAACACAAACTCTCCCTGAGCATAGTATGGAGGGAATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR CAA 90 bp CTCACTGACTGGCTGTGGTTTGTTCTATGCAAAACTAGTCAGGTGGACTGTGAGGTTGGGTTGTTTTTGTaGGTAGTGGTCAATTGGTTA +
Preference number: 3 (lower is better)
Translates to: LTDWLWFVLCKTSQVDCEVGLFL*VVVNWL
Trigger: TAACCAATTGACCACTACCAACAAAAACAACCCAAC...CTCACAGTCCACCTGACTAGTTTTGCATAGAACAAACCACAGCCAGTCAGTGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR TCA 72 bp ACACAGCATGCCATCATGCAAGTCATTTCTACGCATTaGACGAGCACAATATTTGGAATTGGCCTGAGCAAG +
Preference number: 3 (lower is better)
Translates to: TQHAIMQVISTH*TSTIFGIGLSK
Trigger: CTTGCTCAGGCCAATTCCAAATATTGTGCTCGTTCAATGCGTAGAAATGACTTGCATGATGGCATGCTGTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
3UTR TCA 72 bp GACTTCCAAGCCTTCTCCACTTTAACTAGTCTGACCTaGCTAGTTAACTGGGCAAGTTGCTCCTTGACTAAA +
Preference number: 3 (lower is better)
Translates to: DFQAFSTLTSLT*LVNWASCSLTK
Trigger: TTTAGTCAAGGAGCAACTTGCCCAGTTAACTAGTCAGGTCAGACTAGTTAAAGTGGAGAAGGCTTGGAAGTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201438.4
3UTR TCA 72 bp AACCTGACAGGAATTACTTTGCAGAAATTCCCGGCTTaGAAGTTAACCCTACAGCAGAGACAAGAACAGCAG +
Preference number: 3 (lower is better)
Translates to: NLTGITLQKFPA*KLTLQQRQEQQ
Trigger: CTGCTGTTCTTGTCTCTGCTGTAGGGTTAACTTTCAAGCCGGGAATTTCTGCAAAGTAATTCCTGTCAGGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201438.4
3UTR CCA 72 bp ACTGGCTGTGGTTTGTTCTATGCAAAACTAGTCAGGTaGACTGTGAGATTACATCCAAAGTGCTTCTACTGC +
Preference number: 3 (lower is better)
Translates to: TGCGLFYAKLVR*TVRLHPKCFYC
Trigger: GCAGTAGAAGCACTTTGGATGTAATCTCACAGTCCACCTGACTAGTTTTGCATAGAACAAACCACAGCCAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR CAA 90 bp GAGAGCGTTATTCTACAAATGGAAGAGCCTACAGCCTTATCTCAGCCAACACTGAGTCATTTCTACGCATaGAACGAGCACAATATTTGG +
Preference number: 3 (lower is better)
Translates to: ESVILQMEEPTALSQPTLSHFYA*NEHNIW
Trigger: CCAAATATTGTGCTCGTTCAATGCGTAGAAATGACT...CAGTGTTGGCTGAGATAAGGCTGTAGGCTCTTCCATTTGTAGAATAACGCTCTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR-3UTR CAA 90 bp GCTACAATACATAGCACTTTTATCTCTACCCCAGGGTCAGTTCTCCAGGATGAAGATCCATCTGCTTGTTaGGTTGGGTTGTTTTTGTTG +
Preference number: 3 (lower is better)
Translates to: ATIHSTFISTPGSVLQDEDPSAC*VGLFLL
Trigger: CAACAAAAACAACCCAACCAAACAAGCAGATGGATC...TTCATCCTGGAGAACTGACCCTGGGGTAGAGATAAAAGTGCTATGTATTGTAGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR TCA 72 bp TGTTTGTATCCTGTTAAGTTTACTCCTAAGTTGCATTaGCCGAGTGTGGAACATGCAGTAACGTCTGCCCAA +
Preference number: 3 (lower is better)
Translates to: CLYPVKFTPKLH*PSVEHAVTSAQ
Trigger: TTGGGCAGACGTTACTGCATGTTCCACACTCGGTCAATGCAACTTAGGAGTAAACTTAACAGGATACAAACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
3UTR TCA 72 bp CACTTTTATCTCTACCCCAGGGTCAGTTCTCCAGGATaGAGGCTAAACAATCAACAGGATATTGCAAGATAC +
Preference number: 3 (lower is better)
Translates to: HFYLYPRVSSPG*RLNNQQDIARY
Trigger: GTATCTTGCAATATCCTGTTGATTGTTTAGCCTTCATCCTGGAGAACTGACCCTGGGGTAGAGATAAAAGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR TCA 72 bp CAGAGTAAAAGGCAAATATCTTTAGGAGATTGTCACTaGACTAGTCTTCCGCCCACTCTCTTCTTCCTTTCG +
Preference number: 3 (lower is better)
Translates to: QSKRQISLGDCH*TSLPPTLFFLS
Trigger: CGAAAGGAAGAAGAGAGTGGGCGGAAGACTAGTTCAGTGACAATCTCCTAAAGATATTTGCCTTTTACTCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201438.4
3UTR GCA 72 bp TGGCGCTTGGTGTTCCTAGCAGGATCAAATAGCTGTTaGCCATCTCAAGATCTAAGAACAATGATTGAGTTT +
Preference number: 3 (lower is better)
Translates to: WRLVFLAGSNSC*PSQDLRTMIEF
Trigger: AAACTCAATCATTGTTCTTAGATCTTGAGATGGGCAACAGCTATTTGATCCTGCTAGGAACACCAAGCGCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR CCA 72 bp AGTGCTTCTAGTACAAGCATTTATGCAGCACTGCTGTaGACCAGGCCCTATGCTATAGACACTACATATTTA +
Preference number: 3 (lower is better)
Translates to: SASSTSIYAALL*TRPYAIDTTYL
Trigger: TAAATATGTAGTGTCTATAGCATAGGGCCTGGTCCACAGCAGTGCTGCATAAATGCTTGTACTAGAAGCACT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201438.4
3UTR-3UTR CAA 90 bp TTTACAGTGACATTAATAGTACAAGCCATTCGGGGCCAGAGTCTCCCCATGTATAGTCATTTCTACGCATaGAACGAGCACAATATTTGG +
Preference number: 3 (lower is better)
Translates to: FTVTLIVQAIRGQSLPMYSHFYA*NEHNIW
Trigger: CCAAATATTGTGCTCGTTCAATGCGTAGAAATGACT...ATACATGGGGAGACTCTGGCCCCGAATGGCTTGTACTATTAATGTCACTGTAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR CCA 72 bp TTACATTCGTATAACACCAGTAAAAGTACAAGTCTTTaGATAACATGCTGTTGGCAGAACATGCTACGGGAA +
Preference number: 3 (lower is better)
Translates to: LHSYNTSKSTSL*ITCCWQNMLRE
Trigger: TTCCCGTAGCATGTTCTGCCAACAGCATGTTATCCAAAGACTTGTACTTTTACTGGTGTTATACGAATGTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201438.4
3UTR-3UTR CAA 90 bp TTTGGTTGGGTTGTTTTTGTTGGTAGTGGTCAATTGGTTAATTATGTCTCCCTAAGTCATTTCTACGCATaGAACGAGCACAATATTTGG +
Preference number: 3 (lower is better)
Translates to: FGWVVFVGSGQLVNYVSLSHFYA*NEHNIW
Trigger: CCAAATATTGTGCTCGTTCAATGCGTAGAAATGACT...TAGGGAGACATAATTAACCAATTGACCACTACCAACAAAAACAACCCAACCAAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
3UTR CCA 72 bp ATATTTATATATCTATATATATATGTGCAGTGGTACTaGCTGCTGCCGCTCTTTGACAGGCTTCATGAATAT +
Preference number: 3 (lower is better)
Translates to: IFIYLYIYVQWY*LLPLFDRLHEY
Trigger: ATATTCATGAAGCCTGTCAAAGAGCGGCAGCAGCCAGTACCACTGCACATATATATATAGATATATAAATAT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CCA 90 bp CTATGTCGCTTCAGGGGCCCTGAGGGGGAGCTTGTCTCTCTGTGCGCAGCTTCAACTGTCGGGGCCTGGTaGTGCGAGCAGCCGCGCTGC +
Preference number: 4 (lower is better)
Translates to: LCRFRGPEGELVSLCAASTVGAW*CEQPRC
Trigger: GCAGCGCGGCTGCTCGCACCACCAGGCCCCGACAGT...TGAAGCTGCGCACAGAGAGACAAGCTCCCCCTCAGGGCCCCTGAAGCGACATAG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CCA 90 bp GCAGCATTGACAGTGAGTCCAGGGGTCGGGGGTCAGATGGCCACATGGTTCTTAACTGTCGGGGCCTGGTaGTGCGAGCAGCCGCGCTGC +
Preference number: 4 (lower is better)
Translates to: AALTVSPGVGGQMATWFLTVGAW*CEQPRC
Trigger: GCAGCGCGGCTGCTCGCACCACCAGGCCCCGACAGT...TAAGAACCATGTGGCCATCTGACCCCCGACCCCTGGACTCACTGTCAATGCTGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000096198.10
ENSMUST00000200959.2
CDS-3UTR CCA 90 bp GCAGCATTGACAGTGAGTCCAGGGGTCGGGGGTCAGATGGCCACATGGTTCTTAGAAACTGTCGGGGCCTaGTGGTGCGAGCAGCCGCGC +
Preference number: 4 (lower is better)
Translates to: AALTVSPGVGGQMATWFLETVGA*WCEQPR
Trigger: GCGCGGCTGCTCGCACCACCAGGCCCCGACAGTTTC...TAAGAACCATGTGGCCATCTGACCCCCGACCCCTGGACTCACTGTCAATGCTGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000096198.10
ENSMUST00000200959.2
CDS-3UTR CCA 90 bp CTATGTCGCTTCAGGGGCCCTGAGGGGGAGCTTGTCTCTCTGTGCGCAGCTTCATCATCGTCCTCCCGGTaGCTGCCATCCGCCTTGGGT +
Preference number: 4 (lower is better)
Translates to: LCRFRGPEGELVSLCAASSSSSR*LPSALG
Trigger: ACCCAAGGCGGATGGCAGCCACCGGGAGGACGATGA...TGAAGCTGCGCACAGAGAGACAAGCTCCCCCTCAGGGCCCCTGAAGCGACATAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CCA 90 bp CTATGTCGCTTCAGGGGCCCTGAGGGGGAGCTTGTCTCTCTGTGCGCAGCTTCAAGGGGAGGGAGGCTGTaGACGGGGTGCTCTCCTTCT +
Preference number: 4 (lower is better)
Translates to: LCRFRGPEGELVSLCAASRGGRL*TGCSPS
Trigger: AGAAGGAGAGCACCCCGTCCACAGCCTCCCTCCCCT...TGAAGCTGCGCACAGAGAGACAAGCTCCCCCTCAGGGCCCCTGAAGCGACATAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR GCA 90 bp CTATGTCGCTTCAGGGGCCCTGAGGGGGAGCTTGTCTCTCTGTGCGCAGCTTCACGCTCCTCCATCTGCTaGCGCAGGATGTCCAACTCC +
Preference number: 4 (lower is better)
Translates to: LCRFRGPEGELVSLCAASRSSIC*RRMSNS
Trigger: GGAGTTGGACATCCTGCGGCAGCAGATGGAGGAGCG...TGAAGCTGCGCACAGAGAGACAAGCTCCCCCTCAGGGCCCCTGAAGCGACATAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CCA 90 bp GGCAGCATTGACAGTGAGTCCAGGGGTCGGGGGTCAGATGGCCACATGGTTCTTTCATCGTCCTCCCGGTaGCTGCCATCCGCCTTGGGT +
Preference number: 4 (lower is better)
Translates to: GSIDSESRGRGSDGHMVLSSSSR*LPSALG
Trigger: ACCCAAGGCGGATGGCAGCCACCGGGAGGACGATGA...AAGAACCATGTGGCCATCTGACCCCCGACCCCTGGACTCACTGTCAATGCTGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000096198.10
ENSMUST00000200959.2
3UTR CAA 72 bp TCAGGAGCCCACGTCCAGGTGAGCAATATGGCAGCATaGACAGTGAGTCCAGGGGTCGGGGGTCAGATGGCC +
Preference number: 4 (lower is better)
Translates to: SGAHVQVSNMAA*TVSPGVGGQMA
Trigger: GGCCATCTGACCCCCGACCCCTGGACTCACTGTCAATGCTGCCATATTGCTCACCTGGACGTGGGCTCCTGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000096198.10
ENSMUST00000200959.2
CDS-3UTR TCA 90 bp CTATGTCGCTTCAGGGGCCCTGAGGGGGAGCTTGTCTCTCTGTGCGCAGCTTCAGCTCCAGCATCGCCTTaGACTCTGCCTCTTTCTGCT +
Preference number: 4 (lower is better)
Translates to: LCRFRGPEGELVSLCAASAPASP*TLPLSA
Trigger: AGCAGAAAGAGGCAGAGTTCAAGGCGATGCTGGAGC...TGAAGCTGCGCACAGAGAGACAAGCTCCCCCTCAGGGCCCCTGAAGCGACATAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR GCA 90 bp CTATGTCGCTTCAGGGGCCCTGAGGGGGAGCTTGTCTCTCTGTGCGCAGCTTCATTCCCCATGAAGAGCTaGAGGCCAATCAGGGCGAAG +
Preference number: 4 (lower is better)
Translates to: LCRFRGPEGELVSLCAASFPMKS*RPIRAK
Trigger: CTTCGCCCTGATTGGCCTGCAGCTCTTCATGGGGAA...TGAAGCTGCGCACAGAGAGACAAGCTCCCCCTCAGGGCCCCTGAAGCGACATAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR GCA 90 bp CTATGTCGCTTCAGGGGCCCTGAGGGGGAGCTTGTCTCTCTGTGCGCAGCTTCACATTGCAGTCCACGGTaGTGTTGCGTTTCACGCTGC +
Preference number: 4 (lower is better)
Translates to: LCRFRGPEGELVSLCAASHCSPR*CCVSRC
Trigger: GCAGCGTGAAACGCAACAGCACCGTGGACTGCAATG...TGAAGCTGCGCACAGAGAGACAAGCTCCCCCTCAGGGCCCCTGAAGCGACATAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR GCA 90 bp CTATGTCGCTTCAGGGGCCCTGAGGGGGAGCTTGTCTCTCTGTGCGCAGCTTCAAAGCCACTTCCTGGGTaGTCCTTGTCCAAGCTGCAG +
Preference number: 4 (lower is better)
Translates to: LCRFRGPEGELVSLCAASKPLPG*SLSKLQ
Trigger: CTGCAGCTTGGACAAGGAGCACCCAGGAAGTGGCTT...TGAAGCTGCGCACAGAGAGACAAGCTCCCCCTCAGGGCCCCTGAAGCGACATAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CCA 90 bp CTCCCTACCCAGAGGTGTATGAAAGACTTGTACACTGAGAGGATTGCAGCCGGTGAAACTGTCGGGGCCTaGTGGTGCGAGCAGCCGCGC +
Preference number: 4 (lower is better)
Translates to: LPTQRCMKDLYTERIAAGETVGA*WCEQPR
Trigger: GCGCGGCTGCTCGCACCACCAGGCCCCGACAGTTTC...ACCGGCTGCAATCCTCTCAGTGTACAAGTCTTTCATACACCTCTGGGTAGGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp CTATGTCGCTTCAGGGGCCCTGAGGGGGAGCTTGTCTCTCTGTGCGCAGCTTCACCCTATCCTATTGTCTaGCAGCCGGAAGGCCTTCCT +
Preference number: 4 (lower is better)
Translates to: LCRFRGPEGELVSLCAASPYPIV*QPEGLP
Trigger: AGGAAGGCCTTCCGGCTGCCAGACAATAGGATAGGG...TGAAGCTGCGCACAGAGAGACAAGCTCCCCCTCAGGGCCCCTGAAGCGACATAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CCA 90 bp CCGGTATGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGCGCTGCGCCGCAGGCTaGGGAAGATGCGCGACGAGC +
Preference number: 4 (lower is better)
Translates to: PVWNSYHFSKYSEQCRAGRCAAG*GRCATS
Trigger: GCTCGTCGCGCATCTTCCCCAGCCTGCGGCGCAGCG...CCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCATACCGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp GGCAGCATTGACAGTGAGTCCAGGGGTCGGGGGTCAGATGGCCACATGGTTCTTGGATGTCCCCGTAGATaGAAGGCAAACTCTTCCCCG +
Preference number: 4 (lower is better)
Translates to: GSIDSESRGRGSDGHMVLGCPRR*KANSSP
Trigger: CGGGGAAGAGTTTGCCTTTCATCTACGGGGACATCC...AAGAACCATGTGGCCATCTGACCCCCGACCCCTGGACTCACTGTCAATGCTGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000096198.10
ENSMUST00000200959.2
CDS-3UTR GCA 90 bp CTATGTCGCTTCAGGGGCCCTGAGGGGGAGCTTGTCTCTCTGTGCGCAGCTTCATGTTTGGCTTGGGCTTaGTGTCTTCATCGTCCTCCC +
Preference number: 4 (lower is better)
Translates to: LCRFRGPEGELVSLCAASCLAWA*CLHRPP
Trigger: GGGAGGACGATGAAGACAGCAAGCCCAAGCCAAACA...TGAAGCTGCGCACAGAGAGACAAGCTCCCCCTCAGGGCCCCTGAAGCGACATAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR GCA 90 bp CTATGTCGCTTCAGGGGCCCTGAGGGGGAGCTTGTCTCTCTGTGCGCAGCTTCAGGATCCACCACGACTTaGCTAGTCCTTCCTCGATGT +
Preference number: 4 (lower is better)
Translates to: LCRFRGPEGELVSLCAASGSTTT*LVLPRC
Trigger: ACATCGAGGAAGGACTAGGCAAGTCGTGGTGGATCC...TGAAGCTGCGCACAGAGAGACAAGCTCCCCCTCAGGGCCCCTGAAGCGACATAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR GCA 90 bp CTATGTCGCTTCAGGGGCCCTGAGGGGGAGCTTGTCTCTCTGTGCGCAGCTTCACCAGCCTTTGAAGGTTaGCACTTGAAGAAGGGCCAG +
Preference number: 4 (lower is better)
Translates to: LCRFRGPEGELVSLCAASPAFEG*HLKKGQ
Trigger: CTGGCCCTTCTTCAAGTGGCAACCTTCAAAGGCTGG...TGAAGCTGCGCACAGAGAGACAAGCTCCCCCTCAGGGCCCCTGAAGCGACATAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CCA 90 bp TGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTACTGTCGGGGCCTGGTaGTGCGAGCAGCCGCGCTGC +
Preference number: 4 (lower is better)
Translates to: WNSYHFSKYSEQCRAGSCTVGAW*CEQPRC
Trigger: GCAGCGCGGCTGCTCGCACCACCAGGCCCCGACAGT...ACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp GCTGCGGTCATGGTGTCTCTTCACAGCCAGGAAACCATAACTAAGACACTGCTTGAAACTGTCGGGGCCTaGTGGTGCGAGCAGCCGCGC +
Preference number: 4 (lower is better)
Translates to: AAVMVSLHSQETITKTLLETVGA*WCEQPR
Trigger: GCGCGGCTGCTCGCACCACCAGGCCCCGACAGTTTC...AAGCAGTGTCTTAGTTATGGTTTCCTGGCTGTGAAGAGACACCATGACCGCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096198.10
CDS-3UTR CCA 90 bp CTATGTCGCTTCAGGGGCCCTGAGGGGGAGCTTGTCTCTCTGTGCGCAGCTTCACGAATTGTGGCGTCATaGGATGGTGCTCCATTGCCA +
Preference number: 4 (lower is better)
Translates to: LCRFRGPEGELVSLCAASRIVAS*DGAPLP
Trigger: TGGCAATGGAGCACCATCCCATGACGCCACAATTCG...TGAAGCTGCGCACAGAGAGACAAGCTCCCCCTCAGGGCCCCTGAAGCGACATAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CCA 90 bp CTATGTCGCTTCAGGGGCCCTGAGGGGGAGCTTGTCTCTCTGTGCGCAGCTTCACAGCACTTGAACCTCTaGACACAACCCTCCGTGAAG +
Preference number: 4 (lower is better)
Translates to: LCRFRGPEGELVSLCAASQHLNL*TQPSVK
Trigger: CTTCACGGAGGGTTGTGTCCAGAGGTTCAAGTGCTG...TGAAGCTGCGCACAGAGAGACAAGCTCCCCCTCAGGGCCCCTGAAGCGACATAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR TCA 90 bp CTATGTCGCTTCAGGGGCCCTGAGGGGGAGCTTGTCTCTCTGTGCGCAGCTTCACCAGATAGCTCTCGTTaGAGTTTATGGGCCACACGA +
Preference number: 4 (lower is better)
Translates to: LCRFRGPEGELVSLCAASPDSSR*SLWATR
Trigger: TCGTGTGGCCCATAAACTTCAACGAGAGCTATCTGG...TGAAGCTGCGCACAGAGAGACAAGCTCCCCCTCAGGGCCCCTGAAGCGACATAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR TCA 90 bp CTATGTCGCTTCAGGGGCCCTGAGGGGGAGCTTGTCTCTCTGTGCGCAGCTTCAAGGACTTGGCCAATTTaGAGACTCGGAGCAATCGGA +
Preference number: 4 (lower is better)
Translates to: LCRFRGPEGELVSLCAASRTWPI*RLGAIG
Trigger: TCCGATTGCTCCGAGTCTTCAAATTGGCCAAGTCCT...TGAAGCTGCGCACAGAGAGACAAGCTCCCCCTCAGGGCCCCTGAAGCGACATAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR TCA 90 bp GCCATTTCCGCATTAACAGAACAGGGAACGAGTGGAGGGGTAAGGAAGGAGATATGCGGGCCAATCGGATaGCGCGGAATAGGGTCGGGG +
Preference number: 4 (lower is better)
Translates to: AISALTEQGTSGGVRKEICGPIG*RGIGSG
Trigger: CCCCGACCCTATTCCGCGTCATCCGATTGGCCCGCA...TATCTCCTTCCTTACCCCTCCACTCGTTCCCTGTTCTGTTAATGCGGAAATGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR GCA 90 bp GGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCGCAGGCTGGGGAAGATaGGCGACGAGCGGCTGCACT +
Preference number: 4 (lower is better)
Translates to: GTLTISPNTVNSAGLGPVAGWGR*ATSGCT
Trigger: AGTGCAGCCGCTCGTCGCGCATCTTCCCCAGCCTGC...GACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp TCAGGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAACTGTCGGGGCCTGGTaGTGCGAGCAGCCGCGCTGC +
Preference number: 4 (lower is better)
Translates to: SGCNRVTCKQTMFGIGLPTVGAW*CEQPRC
Trigger: GCAGCGCGGCTGCTCGCACCACCAGGCCCCGACAGT...TGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCCTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp CTCACTGACTGGCTGTGGTTTGTTCTATGCAAAACTAGTCAGGTGGACTGTGAGGAAACTGTCGGGGCCTaGTGGTGCGAGCAGCCGCGC +
Preference number: 4 (lower is better)
Translates to: LTDWLWFVLCKTSQVDCEETVGA*WCEQPR
Trigger: GCGCGGCTGCTCGCACCACCAGGCCCCGACAGTTTC...CTCACAGTCCACCTGACTAGTTTTGCATAGAACAAACCACAGCCAGTCAGTGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CCA 90 bp ACACTGCTTTTTCCACTCTGCCATTCTGGCAGGCAGTCGTGGGTTGGAAGAGAATCATCGTCCTCCCGGTaGCTGCCATCCGCCTTGGGT +
Preference number: 4 (lower is better)
Translates to: TLLFPLCHSGRQSWVGRESSSSR*LPSALG
Trigger: ACCCAAGGCGGATGGCAGCCACCGGGAGGACGATGA...TTCTCTTCCAACCCACGACTGCCTGCCAGAATGGCAGAGTGGAAAAAGCAGTGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000096198.10
ENSMUST00000200959.2
CDS-3UTR CCA 90 bp CTCCCTACCCAGAGGTGTATGAAAGACTTGTACACTGAGAGGATTGCAGCCGGTGCACTGGAACCCCTCTaGGCATTGCCCGGCGTCAGA +
Preference number: 4 (lower is better)
Translates to: LPTQRCMKDLYTERIAAGALEPL*ALPGVR
Trigger: TCTGACGCCGGGCAATGCCCAGAGGGGTTCCAGTGC...ACCGGCTGCAATCCTCTCAGTGTACAAGTCTTTCATACACCTCTGGGTAGGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp AATGGAAGAGCCTACAGCCTTATCTCAGCCAACACTGCTGTCCTTGCCAGCCCTAAGGAAGGGCGAGCCTaGGATGCTGAGCAGCGACTG +
Preference number: 4 (lower is better)
Translates to: NGRAYSLISANTAVLASPKEGRA*DAEQRL
Trigger: CAGTCGCTGCTCAGCATCCCAGGCTCGCCCTTCCTT...AGGGCTGGCAAGGACAGCAGTGTTGGCTGAGATAAGGCTGTAGGCTCTTCCATT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CCA 90 bp TCTCCCCATGTATTGGACAGAGCAGCAAAATGTACGACAATGGCTGTATGTCAGCGCTGCGCCGCAGGCTaGGGAAGATGCGCGACGAGC +
Preference number: 4 (lower is better)
Translates to: SPHVLDRAAKCTTMAVCQRCAAG*GRCATS
Trigger: GCTCGTCGCGCATCTTCCCCAGCCTGCGGCGCAGCG...CTGACATACAGCCATTGTCGTACATTTTGCTGCTCTGTCCAATACATGGGGAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CCA 90 bp GGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACGCTGCGCCGCAGGCTaGGGAAGATGCGCGACGAGC +
Preference number: 4 (lower is better)
Translates to: GCNRVTCKQTMFGIGLPVRCAAG*GRCATS
Trigger: GCTCGTCGCGCATCTTCCCCAGCCTGCGGCGCAGCG...TACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp CTCCCTACCCAGAGGTGTATGAAAGACTTGTACACTGAGAGGATTGCAGCCGGTACTCGCCCACAGCAATaGGCACCCGCACGGTCAGGT +
Preference number: 4 (lower is better)
Translates to: LPTQRCMKDLYTERIAAGTRPQQ*APARSG
Trigger: ACCTGACCGTGCGGGTGCCCATTGCTGTGGGCGAGT...ACCGGCTGCAATCCTCTCAGTGTACAAGTCTTTCATACACCTCTGGGTAGGGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
3UTR CAA 72 bp GAGAAGAGGCAAGAAGCACAGGCCGGGGTGCAAGTCTaGTCCTCTGAACCCAGACTTCCTCTTCTCCTGACC +
Preference number: 4 (lower is better)
Translates to: EKRQEAQAGVQV*SSEPRLPLLLT
Trigger: GGTCAGGAGAAGAGGAAGTCTGGGTTCAGAGGACAAGACTTGCACCCCGGCCTGTGCTTCTTGCCTCTTCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR TCA 90 bp GGAAGAAGGGAGTGTTTTCACACAACCAGTAGTCATGGCGACTACTGCTCAGGGGCTGCCTTCGGGGTCTaGCTCGCTGCTAACATCCTC +
Preference number: 4 (lower is better)
Translates to: GRRECFHTTSSHGDYCSGAAFGV*LAANIL
Trigger: GAGGATGTTAGCAGCGAGTCAGACCCCGAAGGCAGC...CCCTGAGCAGTAGTCGCCATGACTACTGGTTGTGTGAAAACACTCCCTTCTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR TCA 90 bp CTCCCTACCCAGAGGTGTATGAAAGACTTGTACACTGAGAGGATTGCAGCCGGTGCTGCCTTCGGGGTCTaGCTCGCTGCTAACATCCTC +
Preference number: 4 (lower is better)
Translates to: LPTQRCMKDLYTERIAAGAAFGV*LAANIL
Trigger: GAGGATGTTAGCAGCGAGTCAGACCCCGAAGGCAGC...ACCGGCTGCAATCCTCTCAGTGTACAAGTCTTTCATACACCTCTGGGTAGGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp CTATGTCGCTTCAGGGGCCCTGAGGGGGAGCTTGTCTCTCTGTGCGCAGCTTCATGTCCATCCAGCCTTTaGAGGTTGCCACTTGAAGAA +
Preference number: 4 (lower is better)
Translates to: LCRFRGPEGELVSLCAASCPSSL*RLPLEE
Trigger: TTCTTCAAGTGGCAACCTTCAAAGGCTGGATGGACA...TGAAGCTGCGCACAGAGAGACAAGCTCCCCCTCAGGGCCCCTGAAGCGACATAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR TCA 90 bp ACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGCATCTCCGCAGCTGCGGGCCAATCGGATaGCGCGGAATAGGGTCGGGG +
Preference number: 4 (lower is better)
Translates to: TCKQTMFGIGLPVQHLRSCGPIG*RGIGSG
Trigger: CCCCGACCCTATTCCGCGTCATCCGATTGGCCCGCA...GCTGCGGAGATGCTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp ACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGCATCTCCGCAGCGCAGGCTGGGGAAGATaGGCGACGAGCGGCTGCACT +
Preference number: 4 (lower is better)
Translates to: TCKQTMFGIGLPVQHLRSAGWGR*ATSGCT
Trigger: AGTGCAGCCGCTCGTCGCGCATCTTCCCCAGCCTGC...GCTGCGGAGATGCTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp GGAAGAAGGGAGTGTTTTCACACAACCAGTAGTCATGGCGACTACTGCTCAGGGAGTCCACGGTGCTGTTaGGTTTCACGCTGCGCCGCA +
Preference number: 4 (lower is better)
Translates to: GRRECFHTTSSHGDYCSGSPRCC*VSRCAA
Trigger: TGCGGCGCAGCGTGAAACGCAACAGCACCGTGGACT...CCCTGAGCAGTAGTCGCCATGACTACTGGTTGTGTGAAAACACTCCCTTCTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR GCA 90 bp CTCCCTACCCAGAGGTGTATGAAAGACTTGTACACTGAGAGGATTGCAGCCGGTGCGACACCACGCCATTaGAGTCCACGGTGCTGTTGC +
Preference number: 4 (lower is better)
Translates to: LPTQRCMKDLYTERIAAGATPRH*SPRCCC
Trigger: GCAACAGCACCGTGGACTGCAATGGCGTGGTGTCGC...ACCGGCTGCAATCCTCTCAGTGTACAAGTCTTTCATACACCTCTGGGTAGGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp CTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCCGAAGGCGCTCCTCCATCTGCTaGCGCAGGATGTCCAACTCC +
Preference number: 4 (lower is better)
Translates to: LTISPNTVNSAGLGPVRRRSSIC*RRMSNS
Trigger: GGAGTTGGACATCCTGCGGCAGCAGATGGAGGAGCG...CCTTCGGACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp GGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCCCTTCCTCTGCCCGCTaGTGCTTCTCCTTGTCGGGC +
Preference number: 4 (lower is better)
Translates to: GTLTISPNTVNSAGLGPVPSSAR*CFSLSG
Trigger: GCCCGACAAGGAGAAGCAGCAGCGGGCAGAGGAAGG...GACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp ACTTTTCTAAAGATCAGGTATCGTTTAGGGCAGCATCAGGCTCCATGCACTCACGAAACTGTCGGGGCCTaGTGGTGCGAGCAGCCGCGC +
Preference number: 4 (lower is better)
Translates to: TFLKIRYRLGQHQAPCTHETVGA*WCEQPR
Trigger: GCGCGGCTGCTCGCACCACCAGGCCCCGACAGTTTC...GTGAGTGCATGGAGCCTGATGCTGCCCTAAACGATACCTGATCTTTAGAAAAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CCA 90 bp GAGAGCGTTATTCTACAAATGGAAGAGCCTACAGCCTTATCTCAGCCAACACTGGAAACTGTCGGGGCCTaGTGGTGCGAGCAGCCGCGC +
Preference number: 4 (lower is better)
Translates to: ESVILQMEEPTALSQPTLETVGA*WCEQPR
Trigger: GCGCGGCTGCTCGCACCACCAGGCCCCGACAGTTTC...CAGTGTTGGCTGAGATAAGGCTGTAGGCTCTTCCATTTGTAGAATAACGCTCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CCA 90 bp CCGGTATGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCATCGTCCTCCCGGTaGCTGCCATCCGCCTTGGGT +
Preference number: 4 (lower is better)
Translates to: PVWNSYHFSKYSEQCRAGSSSSR*LPSALG
Trigger: ACCCAAGGCGGATGGCAGCCACCGGGAGGACGATGA...CCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCATACCGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp GCCATTTCCGCATTAACAGAACAGGGAACGAGTGGAGGGGTAAGGAAGGAGATAGCACTGGAACCCCTCTaGGCATTGCCCGGCGTCAGA +
Preference number: 4 (lower is better)
Translates to: AISALTEQGTSGGVRKEIALEPL*ALPGVR
Trigger: TCTGACGCCGGGCAATGCCCAGAGGGGTTCCAGTGC...TATCTCCTTCCTTACCCCTCCACTCGTTCCCTGTTCTGTTAATGCGGAAATGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CCA 90 bp CTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCCGAAGGAAGGAAGGGCGAGCCTaGGATGCTGAGCAGCGACTG +
Preference number: 4 (lower is better)
Translates to: LTISPNTVNSAGLGPVRRKEGRA*DAEQRL
Trigger: CAGTCGCTGCTCAGCATCCCAGGCTCGCCCTTCCTT...CCTTCGGACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp TTTACAGTGACATTAATAGTACAAGCCATTCGGGGCCAGAGTCTCCCCATGTATCGCTGCGCCGCAGGCTaGGGAAGATGCGCGACGAGC +
Preference number: 4 (lower is better)
Translates to: FTVTLIVQAIRGQSLPMYRCAAG*GRCATS
Trigger: GCTCGTCGCGCATCTTCCCCAGCCTGCGGCGCAGCG...ATACATGGGGAGACTCTGGCCCCGAATGGCTTGTACTATTAATGTCACTGTAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CCA 90 bp GGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCACTCGCCCACAGCAATaGGCACCCGCACGGTCAGGT +
Preference number: 4 (lower is better)
Translates to: GTLTISPNTVNSAGLGPVTRPQQ*APARSG
Trigger: ACCTGACCGTGCGGGTGCCCATTGCTGTGGGCGAGT...GACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp GGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCAGGGGAGGGAGGCTGTaGACGGGGTGCTCTCCTTCT +
Preference number: 4 (lower is better)
Translates to: GTLTISPNTVNSAGLGPVRGGRL*TGCSPS
Trigger: AGAAGGAGAGCACCCCGTCCACAGCCTCCCTCCCCT...GACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp AATGGAAGAGCCTACAGCCTTATCTCAGCCAACACTGCTGTCCTTGCCAGCCCTGGATGTCCCCGTAGATaGAAGGCAAACTCTTCCCCG +
Preference number: 4 (lower is better)
Translates to: NGRAYSLISANTAVLASPGCPRR*KANSSP
Trigger: CGGGGAAGAGTTTGCCTTTCATCTACGGGGACATCC...AGGGCTGGCAAGGACAGCAGTGTTGGCTGAGATAAGGCTGTAGGCTCTTCCATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR TCA 90 bp CTATGTCGCTTCAGGGGCCCTGAGGGGGAGCTTGTCTCTCTGTGCGCAGCTTCAGCAGCGACTGATTCATaGTGGAAAATTTCCTCCCTA +
Preference number: 4 (lower is better)
Translates to: LCRFRGPEGELVSLCAASAATDS*WKISSL
Trigger: TAGGGAGGAAATTTTCCATCATGAATCAGTCGCTGC...TGAAGCTGCGCACAGAGAGACAAGCTCCCCCTCAGGGCCCCTGAAGCGACATAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR TCA 90 bp GGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTATGCGGGCCAATCGGATaGCGCGGAATAGGGTCGGGG +
Preference number: 4 (lower is better)
Translates to: GCNRVTCKQTMFGIGLPVCGPIG*RGIGSG
Trigger: CCCCGACCCTATTCCGCGTCATCCGATTGGCCCGCA...TACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp TCTCCCCATGTATTGGACAGAGCAGCAAAATGTACGACAATGGCTGTATGTCAGTGCGGGCCAATCGGATaGCGCGGAATAGGGTCGGGG +
Preference number: 4 (lower is better)
Translates to: SPHVLDRAAKCTTMAVCQCGPIG*RGIGSG
Trigger: CCCCGACCCTATTCCGCGTCATCCGATTGGCCCGCA...CTGACATACAGCCATTGTCGTACATTTTGCTGCTCTGTCCAATACATGGGGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR GCA 90 bp CAGTTCCTTCTCCAGCATCATGTCTGCCTGGATGCTCCCATGCTTCTGGCCATGTGTTTGGCTTGGGCTTaGTGTCTTCATCGTCCTCCC +
Preference number: 4 (lower is better)
Translates to: QFLLQHHVCLDAPMLLAMCLAWA*CLHRPP
Trigger: GGGAGGACGATGAAGACAGCAAGCCCAAGCCAAACA...CATGGCCAGAAGCATGGGAGCATCCAGGCAGACATGATGCTGGAGAAGGAACTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096198.10
CDS-3UTR GCA 90 bp TCTCCCCATGTATTGGACAGAGCAGCAAAATGTACGACAATGGCTGTATGTCAGGCAGGCTGGGGAAGATaGGCGACGAGCGGCTGCACT +
Preference number: 4 (lower is better)
Translates to: SPHVLDRAAKCTTMAVCQAGWGR*ATSGCT
Trigger: AGTGCAGCCGCTCGTCGCGCATCTTCCCCAGCCTGC...CTGACATACAGCCATTGTCGTACATTTTGCTGCTCTGTCCAATACATGGGGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR GCA 90 bp ACTTTTCTAAAGATCAGGTATCGTTTAGGGCAGCATCAGGCTCCATGCACTCACGCAGGCTGGGGAAGATaGGCGACGAGCGGCTGCACT +
Preference number: 4 (lower is better)
Translates to: TFLKIRYRLGQHQAPCTHAGWGR*ATSGCT
Trigger: AGTGCAGCCGCTCGTCGCGCATCTTCCCCAGCCTGC...GTGAGTGCATGGAGCCTGATGCTGCCCTAAACGATACCTGATCTTTAGAAAAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR GCA 90 bp GAGAGCGTTATTCTACAAATGGAAGAGCCTACAGCCTTATCTCAGCCAACACTGGCAGGCTGGGGAAGATaGGCGACGAGCGGCTGCACT +
Preference number: 4 (lower is better)
Translates to: ESVILQMEEPTALSQPTLAGWGR*ATSGCT
Trigger: AGTGCAGCCGCTCGTCGCGCATCTTCCCCAGCCTGC...CAGTGTTGGCTGAGATAAGGCTGTAGGCTCTTCCATTTGTAGAATAACGCTCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR GCA 90 bp GGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCAGTCCACGGTGCTGTTaGGTTTCACGCTGCGCCGCA +
Preference number: 4 (lower is better)
Translates to: GTLTISPNTVNSAGLGPVSPRCC*VSRCAA
Trigger: TGCGGCGCAGCGTGAAACGCAACAGCACCGTGGACT...GACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp CCGGTATGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGAGTCCACGGTGCTGTTaGGTTTCACGCTGCGCCGCA +
Preference number: 4 (lower is better)
Translates to: PVWNSYHFSKYSEQCRAGSPRCC*VSRCAA
Trigger: TGCGGCGCAGCGTGAAACGCAACAGCACCGTGGACT...CCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCATACCGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp CCGGTATGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGGCGACACCACGCCATTaGAGTCCACGGTGCTGTTGC +
Preference number: 4 (lower is better)
Translates to: PVWNSYHFSKYSEQCRAGATPRH*SPRCCC
Trigger: GCAACAGCACCGTGGACTGCAATGGCGTGGTGTCGC...CCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCATACCGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp GGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCCGCTCCTCCATCTGCTaGCGCAGGATGTCCAACTCC +
Preference number: 4 (lower is better)
Translates to: GTLTISPNTVNSAGLGPVRSSIC*RRMSNS
Trigger: GGAGTTGGACATCCTGCGGCAGCAGATGGAGGAGCG...GACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp ACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGCATCTCCGCAGCTCATCGTCCTCCCGGTaGCTGCCATCCGCCTTGGGT +
Preference number: 4 (lower is better)
Translates to: TCKQTMFGIGLPVQHLRSSSSSR*LPSALG
Trigger: ACCCAAGGCGGATGGCAGCCACCGGGAGGACGATGA...GCTGCGGAGATGCTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp CTCACTGACTGGCTGTGGTTTGTTCTATGCAAAACTAGTCAGGTGGACTGTGAGTCATCGTCCTCCCGGTaGCTGCCATCCGCCTTGGGT +
Preference number: 4 (lower is better)
Translates to: LTDWLWFVLCKTSQVDCESSSSR*LPSALG
Trigger: ACCCAAGGCGGATGGCAGCCACCGGGAGGACGATGA...CTCACAGTCCACCTGACTAGTTTTGCATAGAACAAACCACAGCCAGTCAGTGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CCA 90 bp TGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTGCACTGGAACCCCTCTaGGCATTGCCCGGCGTCAGA +
Preference number: 4 (lower is better)
Translates to: WNSYHFSKYSEQCRAGSCALEPL*ALPGVR
Trigger: TCTGACGCCGGGCAATGCCCAGAGGGGTTCCAGTGC...ACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp CTATGTCGCTTCAGGGGCCCTGAGGGGGAGCTTGTCTCTCTGTGCGCAGCTTCATGGTGTAGCCGTAGTTaGGATTTCTTCCTGCTTTCA +
Preference number: 4 (lower is better)
Translates to: LCRFRGPEGELVSLCAASWCSRS*DFFLLS
Trigger: TGAAAGCAGGAAGAAATCCCAACTACGGCTACACCA...TGAAGCTGCGCACAGAGAGACAAGCTCCCCCTCAGGGCCCCTGAAGCGACATAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CCA 90 bp CCGGTATGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGAAGGAAGGGCGAGCCTaGGATGCTGAGCAGCGACTG +
Preference number: 4 (lower is better)
Translates to: PVWNSYHFSKYSEQCRAGKEGRA*DAEQRL
Trigger: CAGTCGCTGCTCAGCATCCCAGGCTCGCCCTTCCTT...CCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCATACCGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp CTCCCTACCCAGAGGTGTATGAAAGACTTGTACACTGAGAGGATTGCAGCCGGTCATGCACCTTCACTTTaGCCCAGGCCACGCCCTTCT +
Preference number: 4 (lower is better)
Translates to: LPTQRCMKDLYTERIAAGHAPSL*PRPRPS
Trigger: AGAAGGGCGTGGCCTGGGCCAAAGTGAAGGTGCATG...ACCGGCTGCAATCCTCTCAGTGTACAAGTCTTTCATACACCTCTGGGTAGGGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp CTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCCGAAGGCATGCACCTTCACTTTaGCCCAGGCCACGCCCTTCT +
Preference number: 4 (lower is better)
Translates to: LTISPNTVNSAGLGPVRRHAPSL*PRPRPS
Trigger: AGAAGGGCGTGGCCTGGGCCAAAGTGAAGGTGCATG...CCTTCGGACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp CCGGTATGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGCCACGCCGGTGTGGTTaGCGATGCAGTTGGCCTTCT +
Preference number: 4 (lower is better)
Translates to: PVWNSYHFSKYSEQCRAGPRRCG*RCSWPS
Trigger: AGAAGGCCAACTGCATCGCCAACCACACCGGCGTGG...CCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCATACCGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp TGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTAGGGGAGGGAGGCTGTaGACGGGGTGCTCTCCTTCT +
Preference number: 4 (lower is better)
Translates to: WNSYHFSKYSEQCRAGSCRGGRL*TGCSPS
Trigger: AGAAGGAGAGCACCCCGTCCACAGCCTCCCTCCCCT...ACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
3UTR CAA 72 bp TCCTGTCCGAAGGCTGAGCCAATGCGAGGGACAGGATaGCTAGTGTCTGTTGGTGTATGGACCTCATGCATG +
Preference number: 4 (lower is better)
Translates to: SCPKAEPMRGTG*LVSVGVWTSCM
Trigger: CATGCATGAGGTCCATACACCAACAGACACTAGCAATCCTGTCCCTCGCATTGGCTCAGCCTTCGGACAGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp TTCTCAGGGGGAAGCATGCAGAGCGAGACAAGGCATATCAGATGTGCCGATCCCGGTCTCGTAAGAAGGTaGAGCCGTCTATGCAGAAAC +
Preference number: 4 (lower is better)
Translates to: FSGGSMQSETRHIRCADPGLVRR*SRLCRN
Trigger: GTTTCTGCATAGACGGCTTCACCTTCTTACGAGACC...GGGATCGGCACATCTGATATGCCTTGTCTCGCTCTGCATGCTTCCCCCTGAGAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000201438.4
CDS-3UTR TCA 90 bp CTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCCGAAGGAGTAGTCCTGAGTCATaGGGCGGAACAGTGCCAGGA +
Preference number: 4 (lower is better)
Translates to: LTISPNTVNSAGLGPVRRSSPES*GGTVPG
Trigger: TCCTGGCACTGTTCCGCCTCATGACTCAGGACTACT...CCTTCGGACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp AATGGAAGAGCCTACAGCCTTATCTCAGCCAACACTGCTGTCCTTGCCAGCCCTGCCATCTTCCGACTCTaGCTTAAACACCTTCTCGGG +
Preference number: 4 (lower is better)
Translates to: NGRAYSLISANTAVLASPAIFRL*LKHLLG
Trigger: CCCGAGAAGGTGTTTAAGTCAGAGTCGGAAGATGGC...AGGGCTGGCAAGGACAGCAGTGTTGGCTGAGATAAGGCTGTAGGCTCTTCCATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR TCA 90 bp AATGGAAGAGCCTACAGCCTTATCTCAGCCAACACTGCTGTCCTTGCCAGCCCTCAGGACCCCGAAAGCTaGAGATGCTGCTTTTGCTGT +
Preference number: 4 (lower is better)
Translates to: NGRAYSLISANTAVLASPQDPES*RCCFCC
Trigger: ACAGCAAAAGCAGCATCTTCAGCTTTCGGGGTCCTG...AGGGCTGGCAAGGACAGCAGTGTTGGCTGAGATAAGGCTGTAGGCTCTTCCATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR TCA 90 bp CTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCCGAAGGTGTGGTCCTCGTCGATaGTGTACTTCTCCACGCTGC +
Preference number: 4 (lower is better)
Translates to: LTISPNTVNSAGLGPVRRCGPRR*CTSPRC
Trigger: GCAGCGTGGAGAAGTACATCATCGACGAGGACCACA...CCTTCGGACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp CCTCTTCCTCAAGTCCAAAGAATACTTTGCCCTTCCCTGGCGCCTTTGTCTCTGTGTGGTCCTCGTCGATaGTGTACTTCTCCACGCTGC +
Preference number: 4 (lower is better)
Translates to: PLPQVQRILCPSLAPLSLCGPRR*CTSPRC
Trigger: GCAGCGTGGAGAAGTACATCATCGACGAGGACCACA...CAGAGACAAAGGCGCCAGGGAAGGGCAAAGTATTCTTTGGACTTGAGGAAGAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR TCA 90 bp ACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGCATCTCCGCAGCGCTGCCTTCGGGGTCTaGCTCGCTGCTAACATCCTC +
Preference number: 4 (lower is better)
Translates to: TCKQTMFGIGLPVQHLRSAAFGV*LAANIL
Trigger: GAGGATGTTAGCAGCGAGTCAGACCCCGAAGGCAGC...GCTGCGGAGATGCTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp CTCACTGACTGGCTGTGGTTTGTTCTATGCAAAACTAGTCAGGTGGACTGTGAGTCCCTTTGGCGCCCTTaGTCAGACGCAAGATGCGCC +
Preference number: 4 (lower is better)
Translates to: LTDWLWFVLCKTSQVDCESLWRP*SDARCA
Trigger: GGCGCATCTTGCGTCTGATCAAGGGCGCCAAAGGGA...CTCACAGTCCACCTGACTAGTTTTGCATAGAACAAACCACAGCCAGTCAGTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR TCA 90 bp ACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGCATCTCCGCAGCTCCCTTTGGCGCCCTTaGTCAGACGCAAGATGCGCC +
Preference number: 4 (lower is better)
Translates to: TCKQTMFGIGLPVQHLRSSLWRP*SDARCA
Trigger: GGCGCATCTTGCGTCTGATCAAGGGCGCCAAAGGGA...GCTGCGGAGATGCTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp ACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGCATCTCCGCAGCTCCCGCAGTCCCCTTTaGAGCCACTTCCTGGGTGCT +
Preference number: 4 (lower is better)
Translates to: TCKQTMFGIGLPVQHLRSSRSPL*SHFLGA
Trigger: AGCACCCAGGAAGTGGCTTCAAAGGGGACTGCGGGA...GCTGCGGAGATGCTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp GGAAGAAGGGAGTGTTTTCACACAACCAGTAGTCATGGCGACTACTGCTCAGGGCCAGGACTCGCTTGGTaGAGGCGAAAAGGATGTCCA +
Preference number: 4 (lower is better)
Translates to: GRRECFHTTSSHGDYCSGPGLAW*RRKGCP
Trigger: TGGACATCCTTTTCGCCTTCACCAAGCGAGTCCTGG...CCCTGAGCAGTAGTCGCCATGACTACTGGTTGTGTGAAAACACTCCCTTCTTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR TCA 90 bp CCTCTTCCTCAAGTCCAAAGAATACTTTGCCCTTCCCTGGCGCCTTTGTCTCTGCCAGGACTCGCTTGGTaGAGGCGAAAAGGATGTCCA +
Preference number: 4 (lower is better)
Translates to: PLPQVQRILCPSLAPLSLPGLAW*RRKGCP
Trigger: TGGACATCCTTTTCGCCTTCACCAAGCGAGTCCTGG...CAGAGACAAAGGCGCCAGGGAAGGGCAAAGTATTCTTTGGACTTGAGGAAGAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR TCA 90 bp CTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCCGAAGGCCAGGACTCGCTTGGTaGAGGCGAAAAGGATGTCCA +
Preference number: 4 (lower is better)
Translates to: LTISPNTVNSAGLGPVRRPGLAW*RRKGCP
Trigger: TGGACATCCTTTTCGCCTTCACCAAGCGAGTCCTGG...CCTTCGGACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp TGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTTGCGCCTCCTCCTGCTaGTTCTTGAGCTGCTCCAGC +
Preference number: 4 (lower is better)
Translates to: WNSYHFSKYSEQCRAGSCCASSC*FLSCSS
Trigger: GCTGGAGCAGCTCAAGAAGCAGCAGGAGGAGGCGCA...ACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp GGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCCATCTTCTGAGACGGTaGCCGCCGAAGTGGCCATTG +
Preference number: 4 (lower is better)
Translates to: GTLTISPNTVNSAGLGPVHLLRR*PPKWPL
Trigger: CAATGGCCACTTCGGCGGGCACCGTCTCAGAAGATG...GACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp CCTCTTCCTCAAGTCCAAAGAATACTTTGCCCTTCCCTGGCGCCTTTGTCTCTGCACTTTCCTCCACTGTaGTGTGCTCGTCGTCTGCGA +
Preference number: 4 (lower is better)
Translates to: PLPQVQRILCPSLAPLSLHFPPL*CARRLR
Trigger: TCGCAGACGACGAGCACAGCACAGTGGAGGAAAGTG...CAGAGACAAAGGCGCCAGGGAAGGGCAAAGTATTCTTTGGACTTGAGGAAGAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR GCA 90 bp ACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGCATCTCCGCAGCTGTTGCGTTTCACGCTaGGCCGCAGGCTGGGGAAGA +
Preference number: 4 (lower is better)
Translates to: TCKQTMFGIGLPVQHLRSCCVSR*AAGWGR
Trigger: TCTTCCCCAGCCTGCGGCGCAGCGTGAAACGCAACA...GCTGCGGAGATGCTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp CTCACTGACTGGCTGTGGTTTGTTCTATGCAAAACTAGTCAGGTGGACTGTGAGTGTTGCGTTTCACGCTaGGCCGCAGGCTGGGGAAGA +
Preference number: 4 (lower is better)
Translates to: LTDWLWFVLCKTSQVDCECCVSR*AAGWGR
Trigger: TCTTCCCCAGCCTGCGGCGCAGCGTGAAACGCAACA...CTCACAGTCCACCTGACTAGTTTTGCATAGAACAAACCACAGCCAGTCAGTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR GCA 90 bp TGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTTGTTGCGTTTCACGCTaGGCCGCAGGCTGGGGAAGA +
Preference number: 4 (lower is better)
Translates to: WNSYHFSKYSEQCRAGSCCCVSR*AAGWGR
Trigger: TCTTCCCCAGCCTGCGGCGCAGCGTGAAACGCAACA...ACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp CTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCCGAAGGGCCTGCATGAAGGCATaGACCTTCACTTTGGCCCAG +
Preference number: 4 (lower is better)
Translates to: LTISPNTVNSAGLGPVRRACMKA*TFTLAQ
Trigger: CTGGGCCAAAGTGAAGGTGCATGCCTTCATGCAGGC...CCTTCGGACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp AATGGAAGAGCCTACAGCCTTATCTCAGCCAACACTGCTGTCCTTGCCAGCCCTCCGTTGCTTGAAGTGTaGCTGCATGAAGGCATGCAC +
Preference number: 4 (lower is better)
Translates to: NGRAYSLISANTAVLASPPLLEV*LHEGMH
Trigger: GTGCATGCCTTCATGCAGGCACACTTCAAGCAACGG...AGGGCTGGCAAGGACAGCAGTGTTGGCTGAGATAAGGCTGTAGGCTCTTCCATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR GCA 90 bp CTCCCTACCCAGAGGTGTATGAAAGACTTGTACACTGAGAGGATTGCAGCCGGTCCAGTTTGTCTTTGCTaGCTTCGGGGTCTGACTCGC +
Preference number: 4 (lower is better)
Translates to: LPTQRCMKDLYTERIAAGPVCLC*LRGLTR
Trigger: GCGAGTCAGACCCCGAAGGCAGCAAAGACAAACTGG...ACCGGCTGCAATCCTCTCAGTGTACAAGTCTTTCATACACCTCTGGGTAGGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp CCTCTTCCTCAAGTCCAAAGAATACTTTGCCCTTCCCTGGCGCCTTTGTCTCTGCCAGTTTGTCTTTGCTaGCTTCGGGGTCTGACTCGC +
Preference number: 4 (lower is better)
Translates to: PLPQVQRILCPSLAPLSLPVCLC*LRGLTR
Trigger: GCGAGTCAGACCCCGAAGGCAGCAAAGACAAACTGG...CAGAGACAAAGGCGCCAGGGAAGGGCAAAGTATTCTTTGGACTTGAGGAAGAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR GCA 90 bp AATGGAAGAGCCTACAGCCTTATCTCAGCCAACACTGCTGTCCTTGCCAGCCCTCCAGCCTTTGAAGGTTaGCACTTGAAGAAGGGCCAG +
Preference number: 4 (lower is better)
Translates to: NGRAYSLISANTAVLASPPAFEG*HLKKGQ
Trigger: CTGGCCCTTCTTCAAGTGGCAACCTTCAAAGGCTGG...AGGGCTGGCAAGGACAGCAGTGTTGGCTGAGATAAGGCTGTAGGCTCTTCCATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR GCA 90 bp GGAAGAAGGGAGTGTTTTCACACAACCAGTAGTCATGGCGACTACTGCTCAGGGAAGCCACTTCCTGGGTaGTCCTTGTCCAAGCTGCAG +
Preference number: 4 (lower is better)
Translates to: GRRECFHTTSSHGDYCSGKPLPG*SLSKLQ
Trigger: CTGCAGCTTGGACAAGGAGCACCCAGGAAGTGGCTT...CCCTGAGCAGTAGTCGCCATGACTACTGGTTGTGTGAAAACACTCCCTTCTTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR GCA 90 bp CTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCCGAAGGAAGCCACTTCCTGGGTaGTCCTTGTCCAAGCTGCAG +
Preference number: 4 (lower is better)
Translates to: LTISPNTVNSAGLGPVRRKPLPG*SLSKLQ
Trigger: CTGCAGCTTGGACAAGGAGCACCCAGGAAGTGGCTT...CCTTCGGACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp CTCACTGACTGGCTGTGGTTTGTTCTATGCAAAACTAGTCAGGTGGACTGTGAGCGCTCCTCCATCTGCTaGCGCAGGATGTCCAACTCC +
Preference number: 4 (lower is better)
Translates to: LTDWLWFVLCKTSQVDCERSSIC*RRMSNS
Trigger: GGAGTTGGACATCCTGCGGCAGCAGATGGAGGAGCG...CTCACAGTCCACCTGACTAGTTTTGCATAGAACAAACCACAGCCAGTCAGTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR GCA 90 bp ACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGCATCTCCGCAGCGCAGACACCTCTTCCTaGTTGCGCCGCAGAGTGGTC +
Preference number: 4 (lower is better)
Translates to: TCKQTMFGIGLPVQHLRSADTSS*LRRRVV
Trigger: GACCACTCTGCGGCGCAAGCAGGAAGAGGTGTCTGC...GCTGCGGAGATGCTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp GGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCTCCTCTGCCCGCTGCTaGTTCTCCTTGTCGGGCTTT +
Preference number: 4 (lower is better)
Translates to: GTLTISPNTVNSAGLGPVSSARC*FSLSGF
Trigger: AAAGCCCGACAAGGAGAAGCAGCAGCGGGCAGAGGA...GACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp TCTCCCCATGTATTGGACAGAGCAGCAAAATGTACGACAATGGCTGTATGTCAGCCTTCCTCTGCCCGCTaGTGCTTCTCCTTGTCGGGC +
Preference number: 4 (lower is better)
Translates to: SPHVLDRAAKCTTMAVCQPSSAR*CFSLSG
Trigger: GCCCGACAAGGAGAAGCAGCAGCGGGCAGAGGAAGG...CTGACATACAGCCATTGTCGTACATTTTGCTGCTCTGTCCAATACATGGGGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR GCA 90 bp GGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACCTTCCTCTGCCCGCTaGTGCTTCTCCTTGTCGGGC +
Preference number: 4 (lower is better)
Translates to: GCNRVTCKQTMFGIGLPVPSSAR*CFSLSG
Trigger: GCCCGACAAGGAGAAGCAGCAGCGGGCAGAGGAAGG...TACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp TGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGCCTTCCTCTGCCCGCTaGTGCTTCTCCTTGTCGGGC +
Preference number: 4 (lower is better)
Translates to: CNRVTCKQTMFGIGLPVQPSSAR*CFSLSG
Trigger: GCCCGACAAGGAGAAGCAGCAGCGGGCAGAGGAAGG...CTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp GTAGTGGTCAATTGGTTAATTATGTCTCCCTACCCAGAGGTGTATGAAAGACTTACTGTCGGGGCCTGGTaGTGCGAGCAGCCGCGCTGC +
Preference number: 4 (lower is better)
Translates to: VVVNWLIMSPYPEVYERLTVGAW*CEQPRC
Trigger: GCAGCGCGGCTGCTCGCACCACCAGGCCCCGACAGT...AAGTCTTTCATACACCTCTGGGTAGGGAGACATAATTAACCAATTGACCACTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp AACTCTCAGTTCCTTCTCCAGCATCATGTCTGCCTGGATGCTCCCATGCTTCTGGCCATCCGCCTTGGGTaGTTTCTTGAGCTTGCTCTC +
Preference number: 4 (lower is better)
Translates to: NSQFLLQHHVCLDAPMLLAIRLG*FLELAL
Trigger: GAGAGCAAGCTCAAGAAACCACCCAAGGCGGATGGC...CAGAAGCATGGGAGCATCCAGGCAGACATGATGCTGGAGAAGGAACTGAGAGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096198.10
CDS-3UTR CCA 90 bp CTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCCGAAGGGCCATCCGCCTTGGGTaGTTTCTTGAGCTTGCTCTC +
Preference number: 4 (lower is better)
Translates to: LTISPNTVNSAGLGPVRRAIRLG*FLELAL
Trigger: GAGAGCAAGCTCAAGAAACCACCCAAGGCGGATGGC...CCTTCGGACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp CCTCTTCCTCAAGTCCAAAGAATACTTTGCCCTTCCCTGGCGCCTTTGTCTCTGGCCATCCGCCTTGGGTaGTTTCTTGAGCTTGCTCTC +
Preference number: 4 (lower is better)
Translates to: PLPQVQRILCPSLAPLSLAIRLG*FLELAL
Trigger: GAGAGCAAGCTCAAGAAACCACCCAAGGCGGATGGC...CAGAGACAAAGGCGCCAGGGAAGGGCAAAGTATTCTTTGGACTTGAGGAAGAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CCA 90 bp ACACTGCTTTTTCCACTCTGCCATTCTGGCAGGCAGTCGTGGGTTGGAAGAGAAGCCATCCGCCTTGGGTaGTTTCTTGAGCTTGCTCTC +
Preference number: 4 (lower is better)
Translates to: TLLFPLCHSGRQSWVGREAIRLG*FLELAL
Trigger: GAGAGCAAGCTCAAGAAACCACCCAAGGCGGATGGC...TTCTCTTCCAACCCACGACTGCCTGCCAGAATGGCAGAGTGGAAAAAGCAGTGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000096198.10
ENSMUST00000200959.2
CDS-3UTR CCA 90 bp CACTGCTTTTTCCACTCTGCCATTCTGGCAGGCAGTCGTGGGTTGGAAGAGAAGCTCCAGGTCACTGTTTaGCTTGGGCTTGCTGTCTTC +
Preference number: 4 (lower is better)
Translates to: HCFFHSAILAGSRGLEEKLQVTV*LGLAVF
Trigger: GAAGACAGCAAGCCCAAGCCAAACAGTGACCTGGAG...CTTCTCTTCCAACCCACGACTGCCTGCCAGAATGGCAGAGTGGAAAAAGCAGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000096198.10
ENSMUST00000200959.2
CDS-3UTR CCA 90 bp TCAGGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGCACTGGAACCCCTCTaGGCATTGCCCGGCGTCAGA +
Preference number: 4 (lower is better)
Translates to: SGCNRVTCKQTMFGIGLPALEPL*ALPGVR
Trigger: TCTGACGCCGGGCAATGCCCAGAGGGGTTCCAGTGC...TGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCCTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp TGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGGCACTGGAACCCCTCTaGGCATTGCCCGGCGTCAGA +
Preference number: 4 (lower is better)
Translates to: CNRVTCKQTMFGIGLPVQALEPL*ALPGVR
Trigger: TCTGACGCCGGGCAATGCCCAGAGGGGTTCCAGTGC...CTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp CTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCCGAAGGCCTGCTTTCATGCACTaGAACCCCTCTGGGCATTGC +
Preference number: 4 (lower is better)
Translates to: LTISPNTVNSAGLGPVRRPAFMH*NPSGHC
Trigger: GCAATGCCCAGAGGGGTTCCAGTGCATGAAAGCAGG...CCTTCGGACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp ACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGCATCTCCGCAGCAAGGAAGGGCGAGCCTaGGATGCTGAGCAGCGACTG +
Preference number: 4 (lower is better)
Translates to: TCKQTMFGIGLPVQHLRSKEGRA*DAEQRL
Trigger: CAGTCGCTGCTCAGCATCCCAGGCTCGCCCTTCCTT...GCTGCGGAGATGCTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp CCGGTATGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGCATGCACCTTCACTTTaGCCCAGGCCACGCCCTTCT +
Preference number: 4 (lower is better)
Translates to: PVWNSYHFSKYSEQCRAGHAPSL*PRPRPS
Trigger: AGAAGGGCGTGGCCTGGGCCAAAGTGAAGGTGCATG...CCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCATACCGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp TGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCCACGCCGGTGTGGTTaGCGATGCAGTTGGCCTTCT +
Preference number: 4 (lower is better)
Translates to: WNSYHFSKYSEQCRAGSCPRRCG*RCSWPS
Trigger: AGAAGGCCAACTGCATCGCCAACCACACCGGCGTGG...ACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp GGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTAACTCGCCCACAGCAATaGGCACCCGCACGGTCAGGT +
Preference number: 4 (lower is better)
Translates to: GCNRVTCKQTMFGIGLPVTRPQQ*APARSG
Trigger: ACCTGACCGTGCGGGTGCCCATTGCTGTGGGCGAGT...TACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp TGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGACTCGCCCACAGCAATaGGCACCCGCACGGTCAGGT +
Preference number: 4 (lower is better)
Translates to: CNRVTCKQTMFGIGLPVQTRPQQ*APARSG
Trigger: ACCTGACCGTGCGGGTGCCCATTGCTGTGGGCGAGT...CTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp AATGGAAGAGCCTACAGCCTTATCTCAGCCAACACTGCTGTCCTTGCCAGCCCTTCCTCGATGTTGACCTaGCAGCACTTGAACCTCTGG +
Preference number: 4 (lower is better)
Translates to: NGRAYSLISANTAVLASPSSMLT*QHLNLW
Trigger: CCAGAGGTTCAAGTGCTGCCAGGTCAACATCGAGGA...AGGGCTGGCAAGGACAGCAGTGTTGGCTGAGATAAGGCTGTAGGCTCTTCCATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CCA 90 bp CTCCCTACCCAGAGGTGTATGAAAGACTTGTACACTGAGAGGATTGCAGCCGGTTCCTTCTTCTCTCGGTaGGTGCCTCCATTCTCCAGC +
Preference number: 4 (lower is better)
Translates to: LPTQRCMKDLYTERIAAGSFFSR*VPPFSS
Trigger: GCTGGAGAATGGAGGCACCCACCGAGAGAAGAAGGA...ACCGGCTGCAATCCTCTCAGTGTACAAGTCTTTCATACACCTCTGGGTAGGGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp TGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGAGGGGAGGGAGGCTGTaGACGGGGTGCTCTCCTTCT +
Preference number: 4 (lower is better)
Translates to: CNRVTCKQTMFGIGLPVQRGGRL*TGCSPS
Trigger: AGAAGGAGAGCACCCCGTCCACAGCCTCCCTCCCCT...CTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
3UTR CAA 72 bp CAGGGGTGCCTCAGGAGTGTTTTAATGGAGGAAATCTaGGCAGTCTTGAGAAGAGGCAAGAAGCACAGGCCG +
Preference number: 4 (lower is better)
Translates to: QGCLRSVLMEEI*AVLRRGKKHRP
Trigger: CGGCCTGTGCTTCTTGCCTCTTCTCAAGACTGCCAAGATTTCCTCCATTAAAACACTCCTGAGGCACCCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR TCA 90 bp GTCTCAGATGTAGAACTCTCAGTTCCTTCTCCAGCATCATGTCTGCCTGGATGCGGATGTCCCCGTAGATaGAAGGCAAACTCTTCCCCG +
Preference number: 4 (lower is better)
Translates to: VSDVELSVPSPASCLPGCGCPRR*KANSSP
Trigger: CGGGGAAGAGTTTGCCTTTCATCTACGGGGACATCC...GCATCCAGGCAGACATGATGCTGGAGAAGGAACTGAGAGTTCTACATCTGAGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096198.10
CDS-3UTR TCA 90 bp GCTAAAGCCCAGACGGCATCAACATGCCTTTGTCTCTGCCTCGTTGCTGTCAGTAAGCCCTCAGTACCCTaGAAGTGCGTAGAGCTGAAA +
Preference number: 4 (lower is better)
Translates to: AKAQTASTCLCLCLVAVSKPSVP*KCVELK
Trigger: TTTCAGCTCTACGCACTTTCAGGGTACTGAGGGCTT...ACTGACAGCAACGAGGCAGAGACAAAGGCATGTTGATGCCGTCTGGGCTTTAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201438.4
CDS-3UTR TCA 90 bp GCCATTTCCGCATTAACAGAACAGGGAACGAGTGGAGGGGTAAGGAAGGAGATAAGTAGTCCTGAGTCATaGGGCGGAACAGTGCCAGGA +
Preference number: 4 (lower is better)
Translates to: AISALTEQGTSGGVRKEISSPES*GGTVPG
Trigger: TCCTGGCACTGTTCCGCCTCATGACTCAGGACTACT...TATCTCCTTCCTTACCCCTCCACTCGTTCCCTGTTCTGTTAATGCGGAAATGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR TCA 90 bp GGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCGCTCCAGCATCGCCTTaGACTCTGCCTCTTTCTGCT +
Preference number: 4 (lower is better)
Translates to: GTLTISPNTVNSAGLGPVAPASP*TLPLSA
Trigger: AGCAGAAAGAGGCAGAGTTCAAGGCGATGCTGGAGC...GACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp CTCCCTACCCAGAGGTGTATGAAAGACTTGTACACTGAGAGGATTGCAGCCGGTGCCATCTTCCGACTCTaGCTTAAACACCTTCTCGGG +
Preference number: 4 (lower is better)
Translates to: LPTQRCMKDLYTERIAAGAIFRL*LKHLLG
Trigger: CCCGAGAAGGTGTTTAAGTCAGAGTCGGAAGATGGC...ACCGGCTGCAATCCTCTCAGTGTACAAGTCTTTCATACACCTCTGGGTAGGGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp CTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCCGAAGGCAGGACCCCGAAAGCTaGAGATGCTGCTTTTGCTGT +
Preference number: 4 (lower is better)
Translates to: LTISPNTVNSAGLGPVRRQDPES*RCCFCC
Trigger: ACAGCAAAAGCAGCATCTTCAGCTTTCGGGGTCCTG...CCTTCGGACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp TGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGGAAAGATCGCAGCACTaGGAGCCCCTCCACGTCTGC +
Preference number: 4 (lower is better)
Translates to: CNRVTCKQTMFGIGLPVQERSQH*EPLHVC
Trigger: GCAGACGTGGAGGGGCTCTCAGTGCTGCGATCTTTC...CTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp ACTTTTCTAAAGATCAGGTATCGTTTAGGGCAGCATCAGGCTCCATGCACTCACGAAAGATCGCAGCACTaGGAGCCCCTCCACGTCTGC +
Preference number: 4 (lower is better)
Translates to: TFLKIRYRLGQHQAPCTHERSQH*EPLHVC
Trigger: GCAGACGTGGAGGGGCTCTCAGTGCTGCGATCTTTC...GTGAGTGCATGGAGCCTGATGCTGCCCTAAACGATACCTGATCTTTAGAAAAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR TCA 90 bp TCAGGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGCTGCCTTCGGGGTCTaGCTCGCTGCTAACATCCTC +
Preference number: 4 (lower is better)
Translates to: SGCNRVTCKQTMFGIGLPAAFGV*LAANIL
Trigger: GAGGATGTTAGCAGCGAGTCAGACCCCGAAGGCAGC...TGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCCTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp GAGAGCGTTATTCTACAAATGGAAGAGCCTACAGCCTTATCTCAGCCAACACTGTCCCTTTGGCGCCCTTaGTCAGACGCAAGATGCGCC +
Preference number: 4 (lower is better)
Translates to: ESVILQMEEPTALSQPTLSLWRP*SDARCA
Trigger: GGCGCATCTTGCGTCTGATCAAGGGCGCCAAAGGGA...CAGTGTTGGCTGAGATAAGGCTGTAGGCTCTTCCATTTGTAGAATAACGCTCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR TCA 90 bp GGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTATCCCTTTGGCGCCCTTaGTCAGACGCAAGATGCGCC +
Preference number: 4 (lower is better)
Translates to: GCNRVTCKQTMFGIGLPVSLWRP*SDARCA
Trigger: GGCGCATCTTGCGTCTGATCAAGGGCGCCAAAGGGA...TACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp TCAGGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCATCCCTTTGGCGCCCTTaGTCAGACGCAAGATGCGCC +
Preference number: 4 (lower is better)
Translates to: SGCNRVTCKQTMFGIGLPSLWRP*SDARCA
Trigger: GGCGCATCTTGCGTCTGATCAAGGGCGCCAAAGGGA...TGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCCTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp TCAGGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCATCCCGCAGTCCCCTTTaGAGCCACTTCCTGGGTGCT +
Preference number: 4 (lower is better)
Translates to: SGCNRVTCKQTMFGIGLPSRSPL*SHFLGA
Trigger: AGCACCCAGGAAGTGGCTTCAAAGGGGACTGCGGGA...TGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCCTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp AATGGAAGAGCCTACAGCCTTATCTCAGCCAACACTGCTGTCCTTGCCAGCCCTGCTTACAGTACTCGATaGACTGGGTGGCATCAGGAT +
Preference number: 4 (lower is better)
Translates to: NGRAYSLISANTAVLASPAYSTR*TGWHQD
Trigger: ATCCTGATGCCACCCAGTTCATCGAGTACTGTAAGC...AGGGCTGGCAAGGACAGCAGTGTTGGCTGAGATAAGGCTGTAGGCTCTTCCATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR GCA 90 bp GGAAGAAGGGAGTGTTTTCACACAACCAGTAGTCATGGCGACTACTGCTCAGGGTGTTTGGCTTGGGCTTaGTGTCTTCATCGTCCTCCC +
Preference number: 4 (lower is better)
Translates to: GRRECFHTTSSHGDYCSGCLAWA*CLHRPP
Trigger: GGGAGGACGATGAAGACAGCAAGCCCAAGCCAAACA...CCCTGAGCAGTAGTCGCCATGACTACTGGTTGTGTGAAAACACTCCCTTCTTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR GCA 90 bp CTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCCGAAGGTGCCTCCTCCAGTGTTaGCTGGTTCTGCTCTTCGTA +
Preference number: 4 (lower is better)
Translates to: LTISPNTVNSAGLGPVRRCLLQC*LVLLFV
Trigger: TACGAAGAGCAGAACCAGGCAACACTGGAGGAGGCA...CCTTCGGACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp GGAAGAAGGGAGTGTTTTCACACAACCAGTAGTCATGGCGACTACTGCTCAGGGCATCGCCTTGAACTCTaGCTCTTTCTGCTCTGCCTC +
Preference number: 4 (lower is better)
Translates to: GRRECFHTTSSHGDYCSGHRLEL*LFLLCL
Trigger: GAGGCAGAGCAGAAAGAGGCAGAGTTCAAGGCGATG...CCCTGAGCAGTAGTCGCCATGACTACTGGTTGTGTGAAAACACTCCCTTCTTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR GCA 90 bp GGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTATGCGCCTCCTCCTGCTaGTTCTTGAGCTGCTCCAGC +
Preference number: 4 (lower is better)
Translates to: GCNRVTCKQTMFGIGLPVCASSC*FLSCSS
Trigger: GCTGGAGCAGCTCAAGAAGCAGCAGGAGGAGGCGCA...TACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp TGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGTGCGCCTCCTCCTGCTaGTTCTTGAGCTGCTCCAGC +
Preference number: 4 (lower is better)
Translates to: CNRVTCKQTMFGIGLPVQCASSC*FLSCSS
Trigger: GCTGGAGCAGCTCAAGAAGCAGCAGGAGGAGGCGCA...CTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp CTCACTGACTGGCTGTGGTTTGTTCTATGCAAAACTAGTCAGGTGGACTGTGAGCATCTTCTGAGACGGTaGCCGCCGAAGTGGCCATTG +
Preference number: 4 (lower is better)
Translates to: LTDWLWFVLCKTSQVDCEHLLRR*PPKWPL
Trigger: CAATGGCCACTTCGGCGGGCACCGTCTCAGAAGATG...CTCACAGTCCACCTGACTAGTTTTGCATAGAACAAACCACAGCCAGTCAGTGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR GCA 90 bp ACTTTTCTAAAGATCAGGTATCGTTTAGGGCAGCATCAGGCTCCATGCACTCACTGTTGCGTTTCACGCTaGGCCGCAGGCTGGGGAAGA +
Preference number: 4 (lower is better)
Translates to: TFLKIRYRLGQHQAPCTHCCVSR*AAGWGR
Trigger: TCTTCCCCAGCCTGCGGCGCAGCGTGAAACGCAACA...GTGAGTGCATGGAGCCTGATGCTGCCCTAAACGATACCTGATCTTTAGAAAAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR GCA 90 bp TCAGGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGCGACACCACGCCATTaGAGTCCACGGTGCTGTTGC +
Preference number: 4 (lower is better)
Translates to: SGCNRVTCKQTMFGIGLPATPRH*SPRCCC
Trigger: GCAACAGCACCGTGGACTGCAATGGCGTGGTGTCGC...TGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCCTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp CCGGTATGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGGCCTGCATGAAGGCATaGACCTTCACTTTGGCCCAG +
Preference number: 4 (lower is better)
Translates to: PVWNSYHFSKYSEQCRAGACMKA*TFTLAQ
Trigger: CTGGGCCAAAGTGAAGGTGCATGCCTTCATGCAGGC...CCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCATACCGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp CCTCTTCCTCAAGTCCAAAGAATACTTTGCCCTTCCCTGGCGCCTTTGTCTCTGTCATCAGCCTCCCGTTaGTTGAAGTGTGCCTGCATG +
Preference number: 4 (lower is better)
Translates to: PLPQVQRILCPSLAPLSLSSASR*LKCACM
Trigger: CATGCAGGCACACTTCAAGCAACGGGAGGCTGATGA...CAGAGACAAAGGCGCCAGGGAAGGGCAAAGTATTCTTTGGACTTGAGGAAGAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR GCA 90 bp CTCCCTACCCAGAGGTGTATGAAAGACTTGTACACTGAGAGGATTGCAGCCGGTCGGTGTGGTTGGCGATaGAGTTGGCCTTCTTCTCAT +
Preference number: 4 (lower is better)
Translates to: LPTQRCMKDLYTERIAAGRCGWR*SWPSSH
Trigger: ATGAGAAGAAGGCCAACTGCATCGCCAACCACACCG...ACCGGCTGCAATCCTCTCAGTGTACAAGTCTTTCATACACCTCTGGGTAGGGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp CTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCCGAAGGCGGTGTGGTTGGCGATaGAGTTGGCCTTCTTCTCAT +
Preference number: 4 (lower is better)
Translates to: LTISPNTVNSAGLGPVRRRCGWR*SWPSSH
Trigger: ATGAGAAGAAGGCCAACTGCATCGCCAACCACACCG...CCTTCGGACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp GGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCCCAGTTTGTCTTTGCTaGCTTCGGGGTCTGACTCGC +
Preference number: 4 (lower is better)
Translates to: GTLTISPNTVNSAGLGPVPVCLC*LRGLTR
Trigger: GCGAGTCAGACCCCGAAGGCAGCAAAGACAAACTGG...GACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp CTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCCGAAGGCGTCCAGTTTGTCTTTaGTGCCTTCGGGGTCTGACT +
Preference number: 4 (lower is better)
Translates to: LTISPNTVNSAGLGPVRRRPVCL*CLRGLT
Trigger: AGTCAGACCCCGAAGGCAGCAAAGACAAACTGGACG...CCTTCGGACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp CTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCCGAAGGCCAGCCTTTGAAGGTTaGCACTTGAAGAAGGGCCAG +
Preference number: 4 (lower is better)
Translates to: LTISPNTVNSAGLGPVRRPAFEG*HLKKGQ
Trigger: CTGGCCCTTCTTCAAGTGGCAACCTTCAAAGGCTGG...CCTTCGGACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp CCGGTATGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGAAGCCACTTCCTGGGTaGTCCTTGTCCAAGCTGCAG +
Preference number: 4 (lower is better)
Translates to: PVWNSYHFSKYSEQCRAGKPLPG*SLSKLQ
Trigger: CTGCAGCTTGGACAAGGAGCACCCAGGAAGTGGCTT...CCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCATACCGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp TCAGGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGCAGACACCTCTTCCTaGTTGCGCCGCAGAGTGGTC +
Preference number: 4 (lower is better)
Translates to: SGCNRVTCKQTMFGIGLPADTSS*LRRRVV
Trigger: GACCACTCTGCGGCGCAAGCAGGAAGAGGTGTCTGC...TGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCCTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp CTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCCGAAGGTCTTCTCTCGGTGGGTaGCTCCATTCTCCAGCTTGT +
Preference number: 4 (lower is better)
Translates to: LTISPNTVNSAGLGPVRRSSLGG*LHSPAC
Trigger: ACAAGCTGGAGAATGGAGGCACCCACCGAGAGAAGA...CCTTCGGACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp GGAAGAAGGGAGTGTTTTCACACAACCAGTAGTCATGGCGACTACTGCTCAGGGTCTTCTCTCGGTGGGTaGCTCCATTCTCCAGCTTGT +
Preference number: 4 (lower is better)
Translates to: GRRECFHTTSSHGDYCSGSSLGG*LHSPAC
Trigger: ACAAGCTGGAGAATGGAGGCACCCACCGAGAGAAGA...CCCTGAGCAGTAGTCGCCATGACTACTGGTTGTGTGAAAACACTCCCTTCTTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CCA 90 bp GTAGTGGTCAATTGGTTAATTATGTCTCCCTACCCAGAGGTGTATGAAAGACTTGAAACTGTCGGGGCCTaGTGGTGCGAGCAGCCGCGC +
Preference number: 4 (lower is better)
Translates to: VVVNWLIMSPYPEVYERLETVGA*WCEQPR
Trigger: GCGCGGCTGCTCGCACCACCAGGCCCCGACAGTTTC...AAGTCTTTCATACACCTCTGGGTAGGGAGACATAATTAACCAATTGACCACTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp GCCATTTCCGCATTAACAGAACAGGGAACGAGTGGAGGGGTAAGGAAGGAGATAGCCATCCGCCTTGGGTaGTTTCTTGAGCTTGCTCTC +
Preference number: 4 (lower is better)
Translates to: AISALTEQGTSGGVRKEIAIRLG*FLELAL
Trigger: GAGAGCAAGCTCAAGAAACCACCCAAGGCGGATGGC...TATCTCCTTCCTTACCCCTCCACTCGTTCCCTGTTCTGTTAATGCGGAAATGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CCA 90 bp CCGGTATGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGGCCATCCGCCTTGGGTaGTTTCTTGAGCTTGCTCTC +
Preference number: 4 (lower is better)
Translates to: PVWNSYHFSKYSEQCRAGAIRLG*FLELAL
Trigger: GAGAGCAAGCTCAAGAAACCACCCAAGGCGGATGGC...CCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCATACCGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp GACACTGCTTTTTCCACTCTGCCATTCTGGCAGGCAGTCGTGGGTTGGAAGAGAGGTCACTGTTTGGCTTaGGCTTGCTGTCTTCATCGT +
Preference number: 4 (lower is better)
Translates to: DTAFSTLPFWQAVVGWKRGHCLA*ACCLHR
Trigger: ACGATGAAGACAGCAAGCCCAAGCCAAACAGTGACC...TCTCTTCCAACCCACGACTGCCTGCCAGAATGGCAGAGTGGAAAAAGCAGTGTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000096198.10
ENSMUST00000200959.2
CDS-3UTR CCA 90 bp CACTGCTTTTTCCACTCTGCCATTCTGGCAGGCAGTCGTGGGTTGGAAGAGAAGGGTCACTGTTTGGCTTaGGCTTGCTGTCTTCATCGT +
Preference number: 4 (lower is better)
Translates to: HCFFHSAILAGSRGLEEKGHCLA*ACCLHR
Trigger: ACGATGAAGACAGCAAGCCCAAGCCAAACAGTGACC...CTTCTCTTCCAACCCACGACTGCCTGCCAGAATGGCAGAGTGGAAAAAGCAGTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000096198.10
ENSMUST00000200959.2
CDS-3UTR CCA 90 bp CTTCTCCAGCATCATGTCTGCCTGGATGCTCCCATGCTTCTGGCCATGATGATACTCCAGGTCACTGTTTaGCTTGGGCTTGCTGTCTTC +
Preference number: 4 (lower is better)
Translates to: LLQHHVCLDAPMLLAMMILQVTV*LGLAVF
Trigger: GAAGACAGCAAGCCCAAGCCAAACAGTGACCTGGAG...TATCATCATGGCCAGAAGCATGGGAGCATCCAGGCAGACATGATGCTGGAGAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096198.10
CDS-3UTR CCA 90 bp CTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCCGAAGGCTCCAGGTCACTGTTTaGCTTGGGCTTGCTGTCTTC +
Preference number: 4 (lower is better)
Translates to: LTISPNTVNSAGLGPVRRLQVTV*LGLAVF
Trigger: GAAGACAGCAAGCCCAAGCCAAACAGTGACCTGGAG...CCTTCGGACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp CCGGTATGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGCCTGCTTTCATGCACTaGAACCCCTCTGGGCATTGC +
Preference number: 4 (lower is better)
Translates to: PVWNSYHFSKYSEQCRAGPAFMH*NPSGHC
Trigger: GCAATGCCCAGAGGGGTTCCAGTGCATGAAAGCAGG...CCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCATACCGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp CCGGTATGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGCCCTATCCTATTGTCTaGCAGCCGGAAGGCCTTCCT +
Preference number: 4 (lower is better)
Translates to: PVWNSYHFSKYSEQCRAGPYPIV*QPEGLP
Trigger: AGGAAGGCCTTCCGGCTGCCAGACAATAGGATAGGG...CCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCATACCGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp CTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCCGAAGGCGAATTGTGGCGTCATaGGATGGTGCTCCATTGCCA +
Preference number: 4 (lower is better)
Translates to: LTISPNTVNSAGLGPVRRRIVAS*DGAPLP
Trigger: TGGCAATGGAGCACCATCCCATGACGCCACAATTCG...CCTTCGGACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp TGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGCCACGCCGGTGTGGTTaGCGATGCAGTTGGCCTTCT +
Preference number: 4 (lower is better)
Translates to: CNRVTCKQTMFGIGLPVQPRRCG*RCSWPS
Trigger: AGAAGGCCAACTGCATCGCCAACCACACCGGCGTGG...CTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp TCAGGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCACCACGCCGGTGTGGTTaGCGATGCAGTTGGCCTTCT +
Preference number: 4 (lower is better)
Translates to: SGCNRVTCKQTMFGIGLPPRRCG*RCSWPS
Trigger: AGAAGGCCAACTGCATCGCCAACCACACCGGCGTGG...TGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCCTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp CTCCCTACCCAGAGGTGTATGAAAGACTTGTACACTGAGAGGATTGCAGCCGGTCAGCACTTGAACCTCTaGACACAACCCTCCGTGAAG +
Preference number: 4 (lower is better)
Translates to: LPTQRCMKDLYTERIAAGQHLNL*TQPSVK
Trigger: CTTCACGGAGGGTTGTGTCCAGAGGTTCAAGTGCTG...ACCGGCTGCAATCCTCTCAGTGTACAAGTCTTTCATACACCTCTGGGTAGGGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp CCGGTATGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTTCTTCTCTCGGTaGGTGCCTCCATTCTCCAGC +
Preference number: 4 (lower is better)
Translates to: PVWNSYHFSKYSEQCRAGSFFSR*VPPFSS
Trigger: GCTGGAGAATGGAGGCACCCACCGAGAGAAGAAGGA...CCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCATACCGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp GCAGAGACAAGAACAGCAGTGATGAGCCAGGCTGGGGAGAGCATCTGCTGCCCCACGAATTCGCTCACCTaGGATTACCGAAATAGTTTT +
Preference number: 4 (lower is better)
Translates to: AETRTAVMSQAGESICCPTNSLT*DYRNSF
Trigger: AAAACTATTTCGGTAATCCCAGGTGAGCGAATTCGT...GGGGCAGCAGATGCTCTCCCCAGCCTGGCTCATCACTGCTGTTCTTGTCTCTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201438.4
CDS-3UTR TCA 90 bp ACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGCATCTCCGCAGCGGATGTCCCCGTAGATaGAAGGCAAACTCTTCCCCG +
Preference number: 4 (lower is better)
Translates to: TCKQTMFGIGLPVQHLRSGCPRR*KANSSP
Trigger: CGGGGAAGAGTTTGCCTTTCATCTACGGGGACATCC...GCTGCGGAGATGCTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp CTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCCGAAGGGGTCTCGTAAGAAGGTaGAGCCGTCTATGCAGAAAC +
Preference number: 4 (lower is better)
Translates to: LTISPNTVNSAGLGPVRRGLVRR*SRLCRN
Trigger: GTTTCTGCATAGACGGCTTCACCTTCTTACGAGACC...CCTTCGGACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp CTCCCTACCCAGAGGTGTATGAAAGACTTGTACACTGAGAGGATTGCAGCCGGTAAGCCCTCAGTACCCTaGAAGTGCGTAGAGCTGAAA +
Preference number: 4 (lower is better)
Translates to: LPTQRCMKDLYTERIAAGKPSVP*KCVELK
Trigger: TTTCAGCTCTACGCACTTTCAGGGTACTGAGGGCTT...ACCGGCTGCAATCCTCTCAGTGTACAAGTCTTTCATACACCTCTGGGTAGGGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000082209.13
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp TGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTAGTAGTCCTGAGTCATaGGGCGGAACAGTGCCAGGA +
Preference number: 4 (lower is better)
Translates to: WNSYHFSKYSEQCRAGSCSSPES*GGTVPG
Trigger: TCCTGGCACTGTTCCGCCTCATGACTCAGGACTACT...ACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp TGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTGCTCCAGCATCGCCTTaGACTCTGCCTCTTTCTGCT +
Preference number: 4 (lower is better)
Translates to: WNSYHFSKYSEQCRAGSCAPASP*TLPLSA
Trigger: AGCAGAAAGAGGCAGAGTTCAAGGCGATGCTGGAGC...ACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp CCGGTATGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGGCCATCTTCCGACTCTaGCTTAAACACCTTCTCGGG +
Preference number: 4 (lower is better)
Translates to: PVWNSYHFSKYSEQCRAGAIFRL*LKHLLG
Trigger: CCCGAGAAGGTGTTTAAGTCAGAGTCGGAAGATGGC...CCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCATACCGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp TGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTGGTGGGCACTTTCTCTaGGACTCTTCCAGCTCTTCC +
Preference number: 4 (lower is better)
Translates to: WNSYHFSKYSEQCRAGSCGGHFL*DSSSSS
Trigger: GGAAGAGCTGGAAGAGTCTCAGAGAAAGTGCCCACC...ACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp AATGGAAGAGCCTACAGCCTTATCTCAGCCAACACTGCTGTCCTTGCCAGCCCTGGTGACACTCCCAGATaGGGAAAGTATTGGCAAACT +
Preference number: 4 (lower is better)
Translates to: NGRAYSLISANTAVLASPGDTPR*GKYWQT
Trigger: AGTTTGCCAATACTTTCCTCATCTGGGAGTGTCACC...AGGGCTGGCAAGGACAGCAGTGTTGGCTGAGATAAGGCTGTAGGCTCTTCCATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR TCA 90 bp GCTACAATACATAGCACTTTTATCTCTACCCCAGGGTCAGTTCTCCAGGATGAAGAAAGATCGCAGCACTaGGAGCCCCTCCACGTCTGC +
Preference number: 4 (lower is better)
Translates to: ATIHSTFISTPGSVLQDEERSQH*EPLHVC
Trigger: GCAGACGTGGAGGGGCTCTCAGTGCTGCGATCTTTC...TTCATCCTGGAGAACTGACCCTGGGGTAGAGATAAAAGTGCTATGTATTGTAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR TCA 90 bp CTCCCTACCCAGAGGTGTATGAAAGACTTGTACACTGAGAGGATTGCAGCCGGTAGGACTTGGCCAATTTaGAGACTCGGAGCAATCGGA +
Preference number: 4 (lower is better)
Translates to: LPTQRCMKDLYTERIAAGRTWPI*RLGAIG
Trigger: TCCGATTGCTCCGAGTCTTCAAATTGGCCAAGTCCT...ACCGGCTGCAATCCTCTCAGTGTACAAGTCTTTCATACACCTCTGGGTAGGGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp GCTACAATACATAGCACTTTTATCTCTACCCCAGGGTCAGTTCTCCAGGATGAAGCTGCCTTCGGGGTCTaGCTCGCTGCTAACATCCTC +
Preference number: 4 (lower is better)
Translates to: ATIHSTFISTPGSVLQDEAAFGV*LAANIL
Trigger: GAGGATGTTAGCAGCGAGTCAGACCCCGAAGGCAGC...TTCATCCTGGAGAACTGACCCTGGGGTAGAGATAAAAGTGCTATGTATTGTAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR TCA 90 bp CCGGTATGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGAAGAGACAGCCACAATaGGGAAGTCCAACCAGCACC +
Preference number: 4 (lower is better)
Translates to: PVWNSYHFSKYSEQCRAGKRQPQ*GSPTST
Trigger: GGTGCTGGTTGGACTTCCTCATTGTGGCTGTCTCTT...CCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCATACCGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp GGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCAAGAGACAGCCACAATaGGGAAGTCCAACCAGCACC +
Preference number: 4 (lower is better)
Translates to: GTLTISPNTVNSAGLGPVKRQPQ*GSPTST
Trigger: GGTGCTGGTTGGACTTCCTCATTGTGGCTGTCTCTT...GACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp CCGGTATGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTGCCTCCTCCAGTGTTaGCTGGTTCTGCTCTTCGTA +
Preference number: 4 (lower is better)
Translates to: PVWNSYHFSKYSEQCRAGCLLQC*LVLLFV
Trigger: TACGAAGAGCAGAACCAGGCAACACTGGAGGAGGCA...CCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCATACCGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp GCCATTTCCGCATTAACAGAACAGGGAACGAGTGGAGGGGTAAGGAAGGAGATATGCCTCCTCCAGTGTTaGCTGGTTCTGCTCTTCGTA +
Preference number: 4 (lower is better)
Translates to: AISALTEQGTSGGVRKEICLLQC*LVLLFV
Trigger: TACGAAGAGCAGAACCAGGCAACACTGGAGGAGGCA...TATCTCCTTCCTTACCCCTCCACTCGTTCCCTGTTCTGTTAATGCGGAAATGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR GCA 90 bp CCGGTATGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGCATCGCCTTGAACTCTaGCTCTTTCTGCTCTGCCTC +
Preference number: 4 (lower is better)
Translates to: PVWNSYHFSKYSEQCRAGHRLEL*LFLLCL
Trigger: GAGGCAGAGCAGAAAGAGGCAGAGTTCAAGGCGATG...CCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCATACCGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp GCTACAATACATAGCACTTTTATCTCTACCCCAGGGTCAGTTCTCCAGGATGAATGCGCCTCCTCCTGCTaGTTCTTGAGCTGCTCCAGC +
Preference number: 4 (lower is better)
Translates to: ATIHSTFISTPGSVLQDECASSC*FLSCSS
Trigger: GCTGGAGCAGCTCAAGAAGCAGCAGGAGGAGGCGCA...TTCATCCTGGAGAACTGACCCTGGGGTAGAGATAAAAGTGCTATGTATTGTAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR GCA 90 bp GGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACATCTTCTGAGACGGTaGCCGCCGAAGTGGCCATTG +
Preference number: 4 (lower is better)
Translates to: GCNRVTCKQTMFGIGLPVHLLRR*PPKWPL
Trigger: CAATGGCCACTTCGGCGGGCACCGTCTCAGAAGATG...TACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp GGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCTCAGAGAGCTCCTTCTaGTTCCTCTTCTTCCGTCGG +
Preference number: 4 (lower is better)
Translates to: GTLTISPNTVNSAGLGPVSESSF*FLFFRR
Trigger: CCGACGGAAGAAGAGGAAGCAGAAGGAGCTCTCTGA...GACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp GGAAGAAGGGAGTGTTTTCACACAACCAGTAGTCATGGCGACTACTGCTCAGGGAGGCCTTCCTTCTCATaGCATCTTCCGACTCTGACT +
Preference number: 4 (lower is better)
Translates to: GRRECFHTTSSHGDYCSGRPSFS*HLPTLT
Trigger: AGTCAGAGTCGGAAGATGGCATGAGAAGGAAGGCCT...CCCTGAGCAGTAGTCGCCATGACTACTGGTTGTGTGAAAACACTCCCTTCTTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR GCA 90 bp TGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCACTTTCCTCCACTGTaGTGTGCTCGTCGTCTGCGA +
Preference number: 4 (lower is better)
Translates to: WNSYHFSKYSEQCRAGSCHFPPL*CARRLR
Trigger: TCGCAGACGACGAGCACAGCACAGTGGAGGAAAGTG...ACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp AATCATAACCATGAACAAGGCAGAAGTAAGGCCAGACCAGCTAGGTTGGTTGAAAGTCCACGGTGCTGTTaGGTTTCACGCTGCGCCGCA +
Preference number: 4 (lower is better)
Translates to: NHNHEQGRSKARPARLVESPRCC*VSRCAA
Trigger: TGCGGCGCAGCGTGAAACGCAACAGCACCGTGGACT...TTCAACCAACCTAGCTGGTCTGGCCTTACTTCTGCCTTGTTCATGGTTATGATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR GCA 90 bp TGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCATTGCAGTCCACGGTaGTGTTGCGTTTCACGCTGC +
Preference number: 4 (lower is better)
Translates to: WNSYHFSKYSEQCRAGSCHCSPR*CCVSRC
Trigger: GCAGCGTGAAACGCAACAGCACCGTGGACTGCAATG...ACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp GGAAGAAGGGAGTGTTTTCACACAACCAGTAGTCATGGCGACTACTGCTCAGGGCGGATCACCGATATCTaGAGGTTGTTCATTTCCCCG +
Preference number: 4 (lower is better)
Translates to: GRRECFHTTSSHGDYCSGRITDI*RLFISP
Trigger: CGGGGAAATGAACAACCTGCAGATATCGGTGATCCG...CCCTGAGCAGTAGTCGCCATGACTACTGGTTGTGTGAAAACACTCCCTTCTTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR GCA 90 bp CTCCCTACCCAGAGGTGTATGAAAGACTTGTACACTGAGAGGATTGCAGCCGGTCGGATCACCGATATCTaGAGGTTGTTCATTTCCCCG +
Preference number: 4 (lower is better)
Translates to: LPTQRCMKDLYTERIAAGRITDI*RLFISP
Trigger: CGGGGAAATGAACAACCTGCAGATATCGGTGATCCG...ACCGGCTGCAATCCTCTCAGTGTACAAGTCTTTCATACACCTCTGGGTAGGGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp TGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTGCCTGCATGAAGGCATaGACCTTCACTTTGGCCCAG +
Preference number: 4 (lower is better)
Translates to: WNSYHFSKYSEQCRAGSCACMKA*TFTLAQ
Trigger: CTGGGCCAAAGTGAAGGTGCATGCCTTCATGCAGGC...ACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp CCGGTATGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCATCAGCCTCCCGTTaGTTGAAGTGTGCCTGCATG +
Preference number: 4 (lower is better)
Translates to: PVWNSYHFSKYSEQCRAGSSASR*LKCACM
Trigger: CATGCAGGCACACTTCAAGCAACGGGAGGCTGATGA...CCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCATACCGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp GCCATTTCCGCATTAACAGAACAGGGAACGAGTGGAGGGGTAAGGAAGGAGATACGGTGTGGTTGGCGATaGAGTTGGCCTTCTTCTCAT +
Preference number: 4 (lower is better)
Translates to: AISALTEQGTSGGVRKEIRCGWR*SWPSSH
Trigger: ATGAGAAGAAGGCCAACTGCATCGCCAACCACACCG...TATCTCCTTCCTTACCCCTCCACTCGTTCCCTGTTCTGTTAATGCGGAAATGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR GCA 90 bp CTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCCGAAGGAAGTATTCCTCAGGCTaGTCCACTGGGACTTCTTCC +
Preference number: 4 (lower is better)
Translates to: LTISPNTVNSAGLGPVRRKYSSG*STGTSS
Trigger: GGAAGAAGTCCCAGTGGAGCAGCCTGAGGAATACTT...CCTTCGGACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp GGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCGGATCCACCACGACTTaGCTAGTCCTTCCTCGATGT +
Preference number: 4 (lower is better)
Translates to: GTLTISPNTVNSAGLGPVGSTTT*LVLPRC
Trigger: ACATCGAGGAAGGACTAGGCAAGTCGTGGTGGATCC...GACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp CCGGTATGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGCCAGCCTTTGAAGGTTaGCACTTGAAGAAGGGCCAG +
Preference number: 4 (lower is better)
Translates to: PVWNSYHFSKYSEQCRAGPAFEG*HLKKGQ
Trigger: CTGGCCCTTCTTCAAGTGGCAACCTTCAAAGGCTGG...CCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCATACCGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp TGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGTCCTCTGCCCGCTGCTaGTTCTCCTTGTCGGGCTTT +
Preference number: 4 (lower is better)
Translates to: CNRVTCKQTMFGIGLPVQSSARC*FSLSGF
Trigger: AAAGCCCGACAAGGAGAAGCAGCAGCGGGCAGAGGA...CTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp CTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCCGAAGGCCCCTTCTTCTTCAATaGCATCTTCTGAGACGGTGC +
Preference number: 4 (lower is better)
Translates to: LTISPNTVNSAGLGPVRRPLLLQ*HLLRRC
Trigger: GCACCGTCTCAGAAGATGCCATTGAAGAAGAAGGGG...CCTTCGGACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp ACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGCATCTCCGCAGCCCCTATCCTATTGTCTaGCAGCCGGAAGGCCTTCCT +
Preference number: 4 (lower is better)
Translates to: TCKQTMFGIGLPVQHLRSPYPIV*QPEGLP
Trigger: AGGAAGGCCTTCCGGCTGCCAGACAATAGGATAGGG...GCTGCGGAGATGCTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp AATCATAACCATGAACAAGGCAGAAGTAAGGCCAGACCAGCTAGGTTGGTTGAAAAGGAAGGGCGAGCCTaGGATGCTGAGCAGCGACTG +
Preference number: 4 (lower is better)
Translates to: NHNHEQGRSKARPARLVEKEGRA*DAEQRL
Trigger: CAGTCGCTGCTCAGCATCCCAGGCTCGCCCTTCCTT...TTCAACCAACCTAGCTGGTCTGGCCTTACTTCTGCCTTGTTCATGGTTATGATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CCA 90 bp GGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCCGAATTGTGGCGTCATaGGATGGTGCTCCATTGCCA +
Preference number: 4 (lower is better)
Translates to: GTLTISPNTVNSAGLGPVRIVAS*DGAPLP
Trigger: TGGCAATGGAGCACCATCCCATGACGCCACAATTCG...GACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp CTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCCGAAGGGACATGTTCGAATTGTaGCGTCATGGGATGGTGCTC +
Preference number: 4 (lower is better)
Translates to: LTISPNTVNSAGLGPVRRDMFEL*RHGMVL
Trigger: GAGCACCATCCCATGACGCCACAATTCGAACATGTC...CCTTCGGACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp CTCCCTACCCAGAGGTGTATGAAAGACTTGTACACTGAGAGGATTGCAGCCGGTGACATGTTCGAATTGTaGCGTCATGGGATGGTGCTC +
Preference number: 4 (lower is better)
Translates to: LPTQRCMKDLYTERIAAGDMFEL*RHGMVL
Trigger: GAGCACCATCCCATGACGCCACAATTCGAACATGTC...ACCGGCTGCAATCCTCTCAGTGTACAAGTCTTTCATACACCTCTGGGTAGGGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp TCAGGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCACTCAGGCTGCTCCACTaGGACTTCTTCCACCTCAGG +
Preference number: 4 (lower is better)
Translates to: SGCNRVTCKQTMFGIGLPLRLLH*DFFHLR
Trigger: CCTGAGGTGGAAGAAGTCCCAGTGGAGCAGCCTGAG...TGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCCTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp CCGGTATGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGCGTGAAGCAGGCGTCTaGATCCAAGTATTCCTCAGG +
Preference number: 4 (lower is better)
Translates to: PVWNSYHFSKYSEQCRAGREAGV*IQVFLR
Trigger: CCTGAGGAATACTTGGATCCAGACGCCTGCTTCACG...CCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCATACCGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp GGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCCGTGAAGCAGGCGTCTaGATCCAAGTATTCCTCAGG +
Preference number: 4 (lower is better)
Translates to: GTLTISPNTVNSAGLGPVREAGV*IQVFLR
Trigger: CCTGAGGAATACTTGGATCCAGACGCCTGCTTCACG...GACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp CCGGTATGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGCAGCACTTGAACCTCTaGACACAACCCTCCGTGAAG +
Preference number: 4 (lower is better)
Translates to: PVWNSYHFSKYSEQCRAGQHLNL*TQPSVK
Trigger: CTTCACGGAGGGTTGTGTCCAGAGGTTCAAGTGCTG...CCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCATACCGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp CTCCCTACCCAGAGGTGTATGAAAGACTTGTACACTGAGAGGATTGCAGCCGGTCCAGGATGGTACGGATaGTCTTCCTCTGCTCAATGT +
Preference number: 4 (lower is better)
Translates to: LPTQRCMKDLYTERIAAGPGWYG*SSSAQC
Trigger: ACATTGAGCAGAGGAAGACCATCCGTACCATCCTGG...ACCGGCTGCAATCCTCTCAGTGTACAAGTCTTTCATACACCTCTGGGTAGGGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp GCCATTTCCGCATTAACAGAACAGGGAACGAGTGGAGGGGTAAGGAAGGAGATACCGCATACTCCAGGATaGTACGGATGGTCTTCCTCT +
Preference number: 4 (lower is better)
Translates to: AISALTEQGTSGGVRKEIPHTPG*YGWSSS
Trigger: AGAGGAAGACCATCCGTACCATCCTGGAGTATGCGG...TATCTCCTTCCTTACCCCTCCACTCGTTCCCTGTTCTGTTAATGCGGAAATGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CCA 90 bp ACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGCATCTCCGCAGCTCCTTCTTCTCTCGGTaGGTGCCTCCATTCTCCAGC +
Preference number: 4 (lower is better)
Translates to: TCKQTMFGIGLPVQHLRSSFFSR*VPPFSS
Trigger: GCTGGAGAATGGAGGCACCCACCGAGAGAAGAAGGA...GCTGCGGAGATGCTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
3UTR CAA 72 bp AGAGACTTTCTGGCATTCGAGTGCAGCATCTTGGCTTaGAGACCTTGTGGTCAGCTGAGACACCCTGGACTA +
Preference number: 4 (lower is better)
Translates to: RDFLAFECSILA*RPCGQLRHPGL
Trigger: TAGTCCAGGGTGTCTCAGCTGACCACAAGGTCTCAAAGCCAAGATGCTGCACTCGAATGCCAGAAAGTCTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR CAA 72 bp CTCAGGAGTGTTTTAATGGAGGAAATCTTGGCAGTCTaGAGAAGAGGCAAGAAGCACAGGCCGGGGTGCAAG +
Preference number: 4 (lower is better)
Translates to: LRSVLMEEILAV*RRGKKHRPGCK
Trigger: CTTGCACCCCGGCCTGTGCTTCTTGCCTCTTCTCAAGACTGCCAAGATTTCCTCCATTAAAACACTCCTGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR TCA 90 bp TCTCCCCATGTATTGGACAGAGCAGCAAAATGTACGACAATGGCTGTATGTCAGGGATGTCCCCGTAGATaGAAGGCAAACTCTTCCCCG +
Preference number: 4 (lower is better)
Translates to: SPHVLDRAAKCTTMAVCQGCPRR*KANSSP
Trigger: CGGGGAAGAGTTTGCCTTTCATCTACGGGGACATCC...CTGACATACAGCCATTGTCGTACATTTTGCTGCTCTGTCCAATACATGGGGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR TCA 90 bp TCAGGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAAGTAGTCCTGAGTCATaGGGCGGAACAGTGCCAGGA +
Preference number: 4 (lower is better)
Translates to: SGCNRVTCKQTMFGIGLPSSPES*GGTVPG
Trigger: TCCTGGCACTGTTCCGCCTCATGACTCAGGACTACT...TGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCCTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp TCAGGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGCTCCAGCATCGCCTTaGACTCTGCCTCTTTCTGCT +
Preference number: 4 (lower is better)
Translates to: SGCNRVTCKQTMFGIGLPAPASP*TLPLSA
Trigger: AGCAGAAAGAGGCAGAGTTCAAGGCGATGCTGGAGC...TGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCCTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp AATGGAAGAGCCTACAGCCTTATCTCAGCCAACACTGCTGTCCTTGCCAGCCCTGCAGCGACTGATTCATaGTGGAAAATTTCCTCCCTA +
Preference number: 4 (lower is better)
Translates to: NGRAYSLISANTAVLASPAATDS*WKISSL
Trigger: TAGGGAGGAAATTTTCCATCATGAATCAGTCGCTGC...AGGGCTGGCAAGGACAGCAGTGTTGGCTGAGATAAGGCTGTAGGCTCTTCCATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR TCA 90 bp TGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCAGGACCCCGAAAGCTaGAGATGCTGCTTTTGCTGT +
Preference number: 4 (lower is better)
Translates to: WNSYHFSKYSEQCRAGSCQDPES*RCCFCC
Trigger: ACAGCAAAAGCAGCATCTTCAGCTTTCGGGGTCCTG...ACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp TGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGGGTGGGCACTTTCTCTaGGACTCTTCCAGCTCTTCC +
Preference number: 4 (lower is better)
Translates to: CNRVTCKQTMFGIGLPVQGGHFL*DSSSSS
Trigger: GGAAGAGCTGGAAGAGTCTCAGAGAAAGTGCCCACC...CTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp CTCCCTACCCAGAGGTGTATGAAAGACTTGTACACTGAGAGGATTGCAGCCGGTGGTGACACTCCCAGATaGGGAAAGTATTGGCAAACT +
Preference number: 4 (lower is better)
Translates to: LPTQRCMKDLYTERIAAGGDTPR*GKYWQT
Trigger: AGTTTGCCAATACTTTCCTCATCTGGGAGTGTCACC...ACCGGCTGCAATCCTCTCAGTGTACAAGTCTTTCATACACCTCTGGGTAGGGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp GGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCAGGACTTGGCCAATTTaGAGACTCGGAGCAATCGGA +
Preference number: 4 (lower is better)
Translates to: GTLTISPNTVNSAGLGPVRTWPI*RLGAIG
Trigger: TCCGATTGCTCCGAGTCTTCAAATTGGCCAAGTCCT...GACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp TCAGGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCATGTGGTCCTCGTCGATaGTGTACTTCTCCACGCTGC +
Preference number: 4 (lower is better)
Translates to: SGCNRVTCKQTMFGIGLPCGPRR*CTSPRC
Trigger: GCAGCGTGGAGAAGTACATCATCGACGAGGACCACA...TGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCCTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp CTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCCGAAGGAATTGTGCTCCACAATaGGGAAGCAGGTTTTCCGCA +
Preference number: 4 (lower is better)
Translates to: LTISPNTVNSAGLGPVRRNCAPQ*GSRFSA
Trigger: TGCGGAAAACCTGCTTCCTCATTGTGGAGCACAATT...CCTTCGGACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp CTCCCTACCCAGAGGTGTATGAAAGACTTGTACACTGAGAGGATTGCAGCCGGTAATTGTGCTCCACAATaGGGAAGCAGGTTTTCCGCA +
Preference number: 4 (lower is better)
Translates to: LPTQRCMKDLYTERIAAGNCAPQ*GSRFSA
Trigger: TGCGGAAAACCTGCTTCCTCATTGTGGAGCACAATT...ACCGGCTGCAATCCTCTCAGTGTACAAGTCTTTCATACACCTCTGGGTAGGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp CTCACTGACTGGCTGTGGTTTGTTCTATGCAAAACTAGTCAGGTGGACTGTGAGAAGAGACAGCCACAATaGGGAAGTCCAACCAGCACC +
Preference number: 4 (lower is better)
Translates to: LTDWLWFVLCKTSQVDCEKRQPQ*GSPTST
Trigger: GGTGCTGGTTGGACTTCCTCATTGTGGCTGTCTCTT...CTCACAGTCCACCTGACTAGTTTTGCATAGAACAAACCACAGCCAGTCAGTGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR TCA 90 bp CTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCCGAAGGTGTCCATCCAGCCTTTaGAGGTTGCCACTTGAAGAA +
Preference number: 4 (lower is better)
Translates to: LTISPNTVNSAGLGPVRRCPSSL*RLPLEE
Trigger: TTCTTCAAGTGGCAACCTTCAAAGGCTGGATGGACA...CCTTCGGACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp GGAAGAAGGGAGTGTTTTCACACAACCAGTAGTCATGGCGACTACTGCTCAGGGTGTCCATCCAGCCTTTaGAGGTTGCCACTTGAAGAA +
Preference number: 4 (lower is better)
Translates to: GRRECFHTTSSHGDYCSGCPSSL*RLPLEE
Trigger: TTCTTCAAGTGGCAACCTTCAAAGGCTGGATGGACA...CCCTGAGCAGTAGTCGCCATGACTACTGGTTGTGTGAAAACACTCCCTTCTTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR TCA 90 bp CCGGTATGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGGCTTACAGTACTCGATaGACTGGGTGGCATCAGGAT +
Preference number: 4 (lower is better)
Translates to: PVWNSYHFSKYSEQCRAGAYSTR*TGWHQD
Trigger: ATCCTGATGCCACCCAGTTCATCGAGTACTGTAAGC...CCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCATACCGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp TGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGCCAGGACTCGCTTGGTaGAGGCGAAAAGGATGTCCA +
Preference number: 4 (lower is better)
Translates to: CNRVTCKQTMFGIGLPVQPGLAW*RRKGCP
Trigger: TGGACATCCTTTTCGCCTTCACCAAGCGAGTCCTGG...CTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp ACTTTTCTAAAGATCAGGTATCGTTTAGGGCAGCATCAGGCTCCATGCACTCACCCAGGACTCGCTTGGTaGAGGCGAAAAGGATGTCCA +
Preference number: 4 (lower is better)
Translates to: TFLKIRYRLGQHQAPCTHPGLAW*RRKGCP
Trigger: TGGACATCCTTTTCGCCTTCACCAAGCGAGTCCTGG...GTGAGTGCATGGAGCCTGATGCTGCCCTAAACGATACCTGATCTTTAGAAAAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR TCA 90 bp GGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCAGCACTTGGACTCCCTaGCTTCTTTTTGCCTCTTGG +
Preference number: 4 (lower is better)
Translates to: GTLTISPNTVNSAGLGPVSTWTP*LLFASW
Trigger: CCAAGAGGCAAAAAGAAGTCAGGGAGTCCAAGTGCT...GACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp TCTCCCCATGTATTGGACAGAGCAGCAAAATGTACGACAATGGCTGTATGTCAGTTCCCCATGAAGAGCTaGAGGCCAATCAGGGCGAAG +
Preference number: 4 (lower is better)
Translates to: SPHVLDRAAKCTTMAVCQFPMKS*RPIRAK
Trigger: CTTCGCCCTGATTGGCCTGCAGCTCTTCATGGGGAA...CTGACATACAGCCATTGTCGTACATTTTGCTGCTCTGTCCAATACATGGGGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR GCA 90 bp GGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTATTCCCCATGAAGAGCTaGAGGCCAATCAGGGCGAAG +
Preference number: 4 (lower is better)
Translates to: GCNRVTCKQTMFGIGLPVFPMKS*RPIRAK
Trigger: CTTCGCCCTGATTGGCCTGCAGCTCTTCATGGGGAA...TACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp TCAGGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCATTCCCCATGAAGAGCTaGAGGCCAATCAGGGCGAAG +
Preference number: 4 (lower is better)
Translates to: SGCNRVTCKQTMFGIGLPFPMKS*RPIRAK
Trigger: CTTCGCCCTGATTGGCCTGCAGCTCTTCATGGGGAA...TGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCCTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp ACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGCATCTCCGCAGCTTCTTCCTGCTTTCATaGACTGGAACCCCTCTGGGC +
Preference number: 4 (lower is better)
Translates to: TCKQTMFGIGLPVQHLRSFFLLS*TGTPLG
Trigger: GCCCAGAGGGGTTCCAGTGCATGAAAGCAGGAAGAA...GCTGCGGAGATGCTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp TGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTTTCTTCCTGCTTTCATaGACTGGAACCCCTCTGGGC +
Preference number: 4 (lower is better)
Translates to: WNSYHFSKYSEQCRAGSCFFLLS*TGTPLG
Trigger: GCCCAGAGGGGTTCCAGTGCATGAAAGCAGGAAGAA...ACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp ACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGCATCTCCGCAGCCATCGCCTTGAACTCTaGCTCTTTCTGCTCTGCCTC +
Preference number: 4 (lower is better)
Translates to: TCKQTMFGIGLPVQHLRSHRLEL*LFLLCL
Trigger: GAGGCAGAGCAGAAAGAGGCAGAGTTCAAGGCGATG...GCTGCGGAGATGCTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp TTTACAGTGACATTAATAGTACAAGCCATTCGGGGCCAGAGTCTCCCCATGTATCATCTTCTGAGACGGTaGCCGCCGAAGTGGCCATTG +
Preference number: 4 (lower is better)
Translates to: FTVTLIVQAIRGQSLPMYHLLRR*PPKWPL
Trigger: CAATGGCCACTTCGGCGGGCACCGTCTCAGAAGATG...ATACATGGGGAGACTCTGGCCCCGAATGGCTTGTACTATTAATGTCACTGTAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR GCA 90 bp ACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGCATCTCCGCAGCTCAGAGAGCTCCTTCTaGTTCCTCTTCTTCCGTCGG +
Preference number: 4 (lower is better)
Translates to: TCKQTMFGIGLPVQHLRSSESSF*FLFFRR
Trigger: CCGACGGAAGAAGAGGAAGCAGAAGGAGCTCTCTGA...GCTGCGGAGATGCTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp TCAGGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCACACTTTCCTCCACTGTaGTGTGCTCGTCGTCTGCGA +
Preference number: 4 (lower is better)
Translates to: SGCNRVTCKQTMFGIGLPHFPPL*CARRLR
Trigger: TCGCAGACGACGAGCACAGCACAGTGGAGGAAAGTG...TGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCCTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp ACTTTTCTAAAGATCAGGTATCGTTTAGGGCAGCATCAGGCTCCATGCACTCACCACTTTCCTCCACTGTaGTGTGCTCGTCGTCTGCGA +
Preference number: 4 (lower is better)
Translates to: TFLKIRYRLGQHQAPCTHHFPPL*CARRLR
Trigger: TCGCAGACGACGAGCACAGCACAGTGGAGGAAAGTG...GTGAGTGCATGGAGCCTGATGCTGCCCTAAACGATACCTGATCTTTAGAAAAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR GCA 90 bp GGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACACTTTCCTCCACTGTaGTGTGCTCGTCGTCTGCGA +
Preference number: 4 (lower is better)
Translates to: GCNRVTCKQTMFGIGLPVHFPPL*CARRLR
Trigger: TCGCAGACGACGAGCACAGCACAGTGGAGGAAAGTG...TACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp GGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACATTGCAGTCCACGGTaGTGTTGCGTTTCACGCTGC +
Preference number: 4 (lower is better)
Translates to: GCNRVTCKQTMFGIGLPVHCSPR*CCVSRC
Trigger: GCAGCGTGAAACGCAACAGCACCGTGGACTGCAATG...TACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp TCAGGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCACATTGCAGTCCACGGTaGTGTTGCGTTTCACGCTGC +
Preference number: 4 (lower is better)
Translates to: SGCNRVTCKQTMFGIGLPHCSPR*CCVSRC
Trigger: GCAGCGTGAAACGCAACAGCACCGTGGACTGCAATG...TGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCCTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp GAGAGCGTTATTCTACAAATGGAAGAGCCTACAGCCTTATCTCAGCCAACACTGGCCTGCATGAAGGCATaGACCTTCACTTTGGCCCAG +
Preference number: 4 (lower is better)
Translates to: ESVILQMEEPTALSQPTLACMKA*TFTLAQ
Trigger: CTGGGCCAAAGTGAAGGTGCATGCCTTCATGCAGGC...CAGTGTTGGCTGAGATAAGGCTGTAGGCTCTTCCATTTGTAGAATAACGCTCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR GCA 90 bp GGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACCAGTTTGTCTTTGCTaGCTTCGGGGTCTGACTCGC +
Preference number: 4 (lower is better)
Translates to: GCNRVTCKQTMFGIGLPVPVCLC*LRGLTR
Trigger: GCGAGTCAGACCCCGAAGGCAGCAAAGACAAACTGG...TACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp TCAGGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCACCAGTTTGTCTTTGCTaGCTTCGGGGTCTGACTCGC +
Preference number: 4 (lower is better)
Translates to: SGCNRVTCKQTMFGIGLPPVCLC*LRGLTR
Trigger: GCGAGTCAGACCCCGAAGGCAGCAAAGACAAACTGG...TGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCCTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp TGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCGTCCAGTTTGTCTTTaGTGCCTTCGGGGTCTGACT +
Preference number: 4 (lower is better)
Translates to: WNSYHFSKYSEQCRAGSCRPVCL*CLRGLT
Trigger: AGTCAGACCCCGAAGGCAGCAAAGACAAACTGGACG...ACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp GGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCAAGTATTCCTCAGGCTaGTCCACTGGGACTTCTTCC +
Preference number: 4 (lower is better)
Translates to: GTLTISPNTVNSAGLGPVKYSSG*STGTSS
Trigger: GGAAGAAGTCCCAGTGGAGCAGCCTGAGGAATACTT...GACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp AATGGAAGAGCCTACAGCCTTATCTCAGCCAACACTGCTGTCCTTGCCAGCCCTGTCTCAAACCAATTGTaGTCCACAATGAGGAAGCAG +
Preference number: 4 (lower is better)
Translates to: NGRAYSLISANTAVLASPVSNQL*STMRKQ
Trigger: CTGCTTCCTCATTGTGGAGCACAATTGGTTTGAGAC...AGGGCTGGCAAGGACAGCAGTGTTGGCTGAGATAAGGCTGTAGGCTCTTCCATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR GCA 90 bp TGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTTCTTCTCTCGGTGGGTaGCTCCATTCTCCAGCTTGT +
Preference number: 4 (lower is better)
Translates to: WNSYHFSKYSEQCRAGSCSSLGG*LHSPAC
Trigger: ACAAGCTGGAGAATGGAGGCACCCACCGAGAGAAGA...ACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp CTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCCGAAGGTCCCTGACTTCTTTTTaGCTCTTGGCTCTTTCCCTC +
Preference number: 4 (lower is better)
Translates to: LTISPNTVNSAGLGPVRRSLTSF*LLALSL
Trigger: GAGGGAAAGAGCCAAGAGGCAAAAAGAAGTCAGGGA...CCTTCGGACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp GGAAGAAGGGAGTGTTTTCACACAACCAGTAGTCATGGCGACTACTGCTCAGGGTCCCTGACTTCTTTTTaGCTCTTGGCTCTTTCCCTC +
Preference number: 4 (lower is better)
Translates to: GRRECFHTTSSHGDYCSGSLTSF*LLALSL
Trigger: GAGGGAAAGAGCCAAGAGGCAAAAAGAAGTCAGGGA...CCCTGAGCAGTAGTCGCCATGACTACTGGTTGTGTGAAAACACTCCCTTCTTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CCA 90 bp GCCATTTCCGCATTAACAGAACAGGGAACGAGTGGAGGGGTAAGGAAGGAGATAGGTCACTGTTTGGCTTaGGCTTGCTGTCTTCATCGT +
Preference number: 4 (lower is better)
Translates to: AISALTEQGTSGGVRKEIGHCLA*ACCLHR
Trigger: ACGATGAAGACAGCAAGCCCAAGCCAAACAGTGACC...TATCTCCTTCCTTACCCCTCCACTCGTTCCCTGTTCTGTTAATGCGGAAATGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CCA 90 bp GGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCGGTCACTGTTTGGCTTaGGCTTGCTGTCTTCATCGT +
Preference number: 4 (lower is better)
Translates to: GTLTISPNTVNSAGLGPVGHCLA*ACCLHR
Trigger: ACGATGAAGACAGCAAGCCCAAGCCAAACAGTGACC...GACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp TGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCTCCAGGTCACTGTTTaGCTTGGGCTTGCTGTCTTC +
Preference number: 4 (lower is better)
Translates to: WNSYHFSKYSEQCRAGSCLQVTV*LGLAVF
Trigger: GAAGACAGCAAGCCCAAGCCAAACAGTGACCTGGAG...ACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp GGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACCTGCTTTCATGCACTaGAACCCCTCTGGGCATTGC +
Preference number: 4 (lower is better)
Translates to: GCNRVTCKQTMFGIGLPVPAFMH*NPSGHC
Trigger: GCAATGCCCAGAGGGGTTCCAGTGCATGAAAGCAGG...TACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp TCAGGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCACCTGCTTTCATGCACTaGAACCCCTCTGGGCATTGC +
Preference number: 4 (lower is better)
Translates to: SGCNRVTCKQTMFGIGLPPAFMH*NPSGHC
Trigger: GCAATGCCCAGAGGGGTTCCAGTGCATGAAAGCAGG...TGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCCTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp TCTCCCCATGTATTGGACAGAGCAGCAAAATGTACGACAATGGCTGTATGTCAGCCCTATCCTATTGTCTaGCAGCCGGAAGGCCTTCCT +
Preference number: 4 (lower is better)
Translates to: SPHVLDRAAKCTTMAVCQPYPIV*QPEGLP
Trigger: AGGAAGGCCTTCCGGCTGCCAGACAATAGGATAGGG...CTGACATACAGCCATTGTCGTACATTTTGCTGCTCTGTCCAATACATGGGGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CCA 90 bp AATCATAACCATGAACAAGGCAGAAGTAAGGCCAGACCAGCTAGGTTGGTTGAACATGCACCTTCACTTTaGCCCAGGCCACGCCCTTCT +
Preference number: 4 (lower is better)
Translates to: NHNHEQGRSKARPARLVEHAPSL*PRPRPS
Trigger: AGAAGGGCGTGGCCTGGGCCAAAGTGAAGGTGCATG...TTCAACCAACCTAGCTGGTCTGGCCTTACTTCTGCCTTGTTCATGGTTATGATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CCA 90 bp AATCATAACCATGAACAAGGCAGAAGTAAGGCCAGACCAGCTAGGTTGGTTGAACTCAGGCTGCTCCACTaGGACTTCTTCCACCTCAGG +
Preference number: 4 (lower is better)
Translates to: NHNHEQGRSKARPARLVELRLLH*DFFHLR
Trigger: CCTGAGGTGGAAGAAGTCCCAGTGGAGCAGCCTGAG...TTCAACCAACCTAGCTGGTCTGGCCTTACTTCTGCCTTGTTCATGGTTATGATT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CCA 90 bp TTTACAGTGACATTAATAGTACAAGCCATTCGGGGCCAGAGTCTCCCCATGTATCTCAGGCTGCTCCACTaGGACTTCTTCCACCTCAGG +
Preference number: 4 (lower is better)
Translates to: FTVTLIVQAIRGQSLPMYLRLLH*DFFHLR
Trigger: CCTGAGGTGGAAGAAGTCCCAGTGGAGCAGCCTGAG...ATACATGGGGAGACTCTGGCCCCGAATGGCTTGTACTATTAATGTCACTGTAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CCA 90 bp GGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCCCAGGATGGTACGGATaGTCTTCCTCTGCTCAATGT +
Preference number: 4 (lower is better)
Translates to: GTLTISPNTVNSAGLGPVPGWYG*SSSAQC
Trigger: ACATTGAGCAGAGGAAGACCATCCGTACCATCCTGG...GACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp ACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGCATCTCCGCAGCCCGCATACTCCAGGATaGTACGGATGGTCTTCCTCT +
Preference number: 4 (lower is better)
Translates to: TCKQTMFGIGLPVQHLRSPHTPG*YGWSSS
Trigger: AGAGGAAGACCATCCGTACCATCCTGGAGTATGCGG...GCTGCGGAGATGCTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp GGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCGCTCGTAAGACACTTTaGAAGGATTGGACGCCACGA +
Preference number: 4 (lower is better)
Translates to: GTLTISPNTVNSAGLGPVARKTL*KDWTPR
Trigger: TCGTGGCGTCCAATCCTTCCAAAGTGTCTTACGAGC...GACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp TCAGGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCATCCTTCTTCTCTCGGTaGGTGCCTCCATTCTCCAGC +
Preference number: 4 (lower is better)
Translates to: SGCNRVTCKQTMFGIGLPSFFSR*VPPFSS
Trigger: GCTGGAGAATGGAGGCACCCACCGAGAGAAGAAGGA...TGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCCTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp TGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGTCCTTCTTCTCTCGGTaGGTGCCTCCATTCTCCAGC +
Preference number: 4 (lower is better)
Translates to: CNRVTCKQTMFGIGLPVQSFFSR*VPPFSS
Trigger: GCTGGAGAATGGAGGCACCCACCGAGAGAAGAAGGA...CTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp ACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGCATCTCCGCAGCGGTCTCGTAAGAAGGTaGAGCCGTCTATGCAGAAAC +
Preference number: 4 (lower is better)
Translates to: TCKQTMFGIGLPVQHLRSGLVRR*SRLCRN
Trigger: GTTTCTGCATAGACGGCTTCACCTTCTTACGAGACC...GCTGCGGAGATGCTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp TGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCCAGATAGCTCTCGTTaGAGTTTATGGGCCACACGA +
Preference number: 4 (lower is better)
Translates to: WNSYHFSKYSEQCRAGSCPDSSR*SLWATR
Trigger: TCGTGTGGCCCATAAACTTCAACGAGAGCTATCTGG...ACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp ACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGCATCTCCGCAGCCCAGATAGCTCTCGTTaGAGTTTATGGGCCACACGA +
Preference number: 4 (lower is better)
Translates to: TCKQTMFGIGLPVQHLRSPDSSR*SLWATR
Trigger: TCGTGTGGCCCATAAACTTCAACGAGAGCTATCTGG...GCTGCGGAGATGCTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp AATCATAACCATGAACAAGGCAGAAGTAAGGCCAGACCAGCTAGGTTGGTTGAAGCTCCAGCATCGCCTTaGACTCTGCCTCTTTCTGCT +
Preference number: 4 (lower is better)
Translates to: NHNHEQGRSKARPARLVEAPASP*TLPLSA
Trigger: AGCAGAAAGAGGCAGAGTTCAAGGCGATGCTGGAGC...TTCAACCAACCTAGCTGGTCTGGCCTTACTTCTGCCTTGTTCATGGTTATGATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR TCA 90 bp ACTTTTCTAAAGATCAGGTATCGTTTAGGGCAGCATCAGGCTCCATGCACTCACGCCATCTTCCGACTCTaGCTTAAACACCTTCTCGGG +
Preference number: 4 (lower is better)
Translates to: TFLKIRYRLGQHQAPCTHAIFRL*LKHLLG
Trigger: CCCGAGAAGGTGTTTAAGTCAGAGTCGGAAGATGGC...GTGAGTGCATGGAGCCTGATGCTGCCCTAAACGATACCTGATCTTTAGAAAAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR TCA 90 bp CTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCCGAAGGGCAGCGACTGATTCATaGTGGAAAATTTCCTCCCTA +
Preference number: 4 (lower is better)
Translates to: LTISPNTVNSAGLGPVRRAATDS*WKISSL
Trigger: TAGGGAGGAAATTTTCCATCATGAATCAGTCGCTGC...CCTTCGGACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp TTTACAGTGACATTAATAGTACAAGCCATTCGGGGCCAGAGTCTCCCCATGTATGGTGGGCACTTTCTCTaGGACTCTTCCAGCTCTTCC +
Preference number: 4 (lower is better)
Translates to: FTVTLIVQAIRGQSLPMYGGHFL*DSSSSS
Trigger: GGAAGAGCTGGAAGAGTCTCAGAGAAAGTGCCCACC...ATACATGGGGAGACTCTGGCCCCGAATGGCTTGTACTATTAATGTCACTGTAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR TCA 90 bp GTAGTGGTCAATTGGTTAATTATGTCTCCCTACCCAGAGGTGTATGAAAGACTTGAAAGATCGCAGCACTaGGAGCCCCTCCACGTCTGC +
Preference number: 4 (lower is better)
Translates to: VVVNWLIMSPYPEVYERLERSQH*EPLHVC
Trigger: GCAGACGTGGAGGGGCTCTCAGTGCTGCGATCTTTC...AAGTCTTTCATACACCTCTGGGTAGGGAGACATAATTAACCAATTGACCACTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp TCAGGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAAAGAGACAGCCACAATaGGGAAGTCCAACCAGCACC +
Preference number: 4 (lower is better)
Translates to: SGCNRVTCKQTMFGIGLPKRQPQ*GSPTST
Trigger: GGTGCTGGTTGGACTTCCTCATTGTGGCTGTCTCTT...TGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCCTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp CTCCCTACCCAGAGGTGTATGAAAGACTTGTACACTGAGAGGATTGCAGCCGGTTGTTCCAGCCAATGGTaGAATAGTAGTGTCTCAAGG +
Preference number: 4 (lower is better)
Translates to: LPTQRCMKDLYTERIAAGCSSQW*NSSVSR
Trigger: CCTTGAGACACTACTATTTCACCATTGGCTGGAACA...ACCGGCTGCAATCCTCTCAGTGTACAAGTCTTTCATACACCTCTGGGTAGGGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp TTTGGTTGGGTTGTTTTTGTTGGTAGTGGTCAATTGGTTAATTATGTCTCCCTATGCGGGCCAATCGGATaGCGCGGAATAGGGTCGGGG +
Preference number: 4 (lower is better)
Translates to: FGWVVFVGSGQLVNYVSLCGPIG*RGIGSG
Trigger: CCCCGACCCTATTCCGCGTCATCCGATTGGCCCGCA...TAGGGAGACATAATTAACCAATTGACCACTACCAACAAAAACAACCCAACCAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp GTAGTGGTCAATTGGTTAATTATGTCTCCCTACCCAGAGGTGTATGAAAGACTTTCCCGCAGTCCCCTTTaGAGCCACTTCCTGGGTGCT +
Preference number: 4 (lower is better)
Translates to: VVVNWLIMSPYPEVYERLSRSPL*SHFLGA
Trigger: AGCACCCAGGAAGTGGCTTCAAAGGGGACTGCGGGA...AAGTCTTTCATACACCTCTGGGTAGGGAGACATAATTAACCAATTGACCACTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp GGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTATGTTTGGCTTGGGCTTaGTGTCTTCATCGTCCTCCC +
Preference number: 4 (lower is better)
Translates to: GCNRVTCKQTMFGIGLPVCLAWA*CLHRPP
Trigger: GGGAGGACGATGAAGACAGCAAGCCCAAGCCAAACA...TACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp TGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGTGCCTCCTCCAGTGTTaGCTGGTTCTGCTCTTCGTA +
Preference number: 4 (lower is better)
Translates to: CNRVTCKQTMFGIGLPVQCLLQC*LVLLFV
Trigger: TACGAAGAGCAGAACCAGGCAACACTGGAGGAGGCA...CTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp TGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGTCAGAGAGCTCCTTCTaGTTCCTCTTCTTCCGTCGG +
Preference number: 4 (lower is better)
Translates to: CNRVTCKQTMFGIGLPVQSESSF*FLFFRR
Trigger: CCGACGGAAGAAGAGGAAGCAGAAGGAGCTCTCTGA...CTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp GGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTATCAGAGAGCTCCTTCTaGTTCCTCTTCTTCCGTCGG +
Preference number: 4 (lower is better)
Translates to: GCNRVTCKQTMFGIGLPVSESSF*FLFFRR
Trigger: CCGACGGAAGAAGAGGAAGCAGAAGGAGCTCTCTGA...TACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp TGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTAGGCCTTCCTTCTCATaGCATCTTCCGACTCTGACT +
Preference number: 4 (lower is better)
Translates to: WNSYHFSKYSEQCRAGSCRPSFS*HLPTLT
Trigger: AGTCAGAGTCGGAAGATGGCATGAGAAGGAAGGCCT...ACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp ACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGCATCTCCGCAGCAGGCCTTCCTTCTCATaGCATCTTCCGACTCTGACT +
Preference number: 4 (lower is better)
Translates to: TCKQTMFGIGLPVQHLRSRPSFS*HLPTLT
Trigger: AGTCAGAGTCGGAAGATGGCATGAGAAGGAAGGCCT...GCTGCGGAGATGCTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp GTAGTGGTCAATTGGTTAATTATGTCTCCCTACCCAGAGGTGTATGAAAGACTTTGTTGCGTTTCACGCTaGGCCGCAGGCTGGGGAAGA +
Preference number: 4 (lower is better)
Translates to: VVVNWLIMSPYPEVYERLCCVSR*AAGWGR
Trigger: TCTTCCCCAGCCTGCGGCGCAGCGTGAAACGCAACA...AAGTCTTTCATACACCTCTGGGTAGGGAGACATAATTAACCAATTGACCACTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp GTAGTGGTCAATTGGTTAATTATGTCTCCCTACCCAGAGGTGTATGAAAGACTTGCGACACCACGCCATTaGAGTCCACGGTGCTGTTGC +
Preference number: 4 (lower is better)
Translates to: VVVNWLIMSPYPEVYERLATPRH*SPRCCC
Trigger: GCAACAGCACCGTGGACTGCAATGGCGTGGTGTCGC...AAGTCTTTCATACACCTCTGGGTAGGGAGACATAATTAACCAATTGACCACTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp ACTTTTCTAAAGATCAGGTATCGTTTAGGGCAGCATCAGGCTCCATGCACTCACCCGTTGCTTGAAGTGTaGCTGCATGAAGGCATGCAC +
Preference number: 4 (lower is better)
Translates to: TFLKIRYRLGQHQAPCTHPLLEV*LHEGMH
Trigger: GTGCATGCCTTCATGCAGGCACACTTCAAGCAACGG...GTGAGTGCATGGAGCCTGATGCTGCCCTAAACGATACCTGATCTTTAGAAAAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR GCA 90 bp TCAGGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCACCGTTGCTTGAAGTGTaGCTGCATGAAGGCATGCAC +
Preference number: 4 (lower is better)
Translates to: SGCNRVTCKQTMFGIGLPPLLEV*LHEGMH
Trigger: GTGCATGCCTTCATGCAGGCACACTTCAAGCAACGG...TGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCCTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp GAGAGCGTTATTCTACAAATGGAAGAGCCTACAGCCTTATCTCAGCCAACACTGTCATCAGCCTCCCGTTaGTTGAAGTGTGCCTGCATG +
Preference number: 4 (lower is better)
Translates to: ESVILQMEEPTALSQPTLSSASR*LKCACM
Trigger: CATGCAGGCACACTTCAAGCAACGGGAGGCTGATGA...CAGTGTTGGCTGAGATAAGGCTGTAGGCTCTTCCATTTGTAGAATAACGCTCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR GCA 90 bp GGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTATCATCAGCCTCCCGTTaGTTGAAGTGTGCCTGCATG +
Preference number: 4 (lower is better)
Translates to: GCNRVTCKQTMFGIGLPVSSASR*LKCACM
Trigger: CATGCAGGCACACTTCAAGCAACGGGAGGCTGATGA...TACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp GGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACGGTGTGGTTGGCGATaGAGTTGGCCTTCTTCTCAT +
Preference number: 4 (lower is better)
Translates to: GCNRVTCKQTMFGIGLPVRCGWR*SWPSSH
Trigger: ATGAGAAGAAGGCCAACTGCATCGCCAACCACACCG...TACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp TCAGGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCACGTCCAGTTTGTCTTTaGTGCCTTCGGGGTCTGACT +
Preference number: 4 (lower is better)
Translates to: SGCNRVTCKQTMFGIGLPRPVCL*CLRGLT
Trigger: AGTCAGACCCCGAAGGCAGCAAAGACAAACTGGACG...TGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCCTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp CTCCCTACCCAGAGGTGTATGAAAGACTTGTACACTGAGAGGATTGCAGCCGGTGTCTCAAACCAATTGTaGTCCACAATGAGGAAGCAG +
Preference number: 4 (lower is better)
Translates to: LPTQRCMKDLYTERIAAGVSNQL*STMRKQ
Trigger: CTGCTTCCTCATTGTGGAGCACAATTGGTTTGAGAC...ACCGGCTGCAATCCTCTCAGTGTACAAGTCTTTCATACACCTCTGGGTAGGGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp GCTACAATACATAGCACTTTTATCTCTACCCCAGGGTCAGTTCTCCAGGATGAAAAGCCACTTCCTGGGTaGTCCTTGTCCAAGCTGCAG +
Preference number: 4 (lower is better)
Translates to: ATIHSTFISTPGSVLQDEKPLPG*SLSKLQ
Trigger: CTGCAGCTTGGACAAGGAGCACCCAGGAAGTGGCTT...TTCATCCTGGAGAACTGACCCTGGGGTAGAGATAAAAGTGCTATGTATTGTAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR GCA 90 bp GTAGTGGTCAATTGGTTAATTATGTCTCCCTACCCAGAGGTGTATGAAAGACTTGCAGACACCTCTTCCTaGTTGCGCCGCAGAGTGGTC +
Preference number: 4 (lower is better)
Translates to: VVVNWLIMSPYPEVYERLADTSS*LRRRVV
Trigger: GACCACTCTGCGGCGCAAGCAGGAAGAGGTGTCTGC...AAGTCTTTCATACACCTCTGGGTAGGGAGACATAATTAACCAATTGACCACTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp TGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGTCTTCTCTCGGTGGGTaGCTCCATTCTCCAGCTTGT +
Preference number: 4 (lower is better)
Translates to: CNRVTCKQTMFGIGLPVQSSLGG*LHSPAC
Trigger: ACAAGCTGGAGAATGGAGGCACCCACCGAGAGAAGA...CTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp TTTACAGTGACATTAATAGTACAAGCCATTCGGGGCCAGAGTCTCCCCATGTATGCCATCCGCCTTGGGTaGTTTCTTGAGCTTGCTCTC +
Preference number: 4 (lower is better)
Translates to: FTVTLIVQAIRGQSLPMYAIRLG*FLELAL
Trigger: GAGAGCAAGCTCAAGAAACCACCCAAGGCGGATGGC...ATACATGGGGAGACTCTGGCCCCGAATGGCTTGTACTATTAATGTCACTGTAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CCA 90 bp ACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGCATCTCCGCAGCGGTCACTGTTTGGCTTaGGCTTGCTGTCTTCATCGT +
Preference number: 4 (lower is better)
Translates to: TCKQTMFGIGLPVQHLRSGHCLA*ACCLHR
Trigger: ACGATGAAGACAGCAAGCCCAAGCCAAACAGTGACC...GCTGCGGAGATGCTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp TCTCCCCATGTATTGGACAGAGCAGCAAAATGTACGACAATGGCTGTATGTCAGCTCCAGGTCACTGTTTaGCTTGGGCTTGCTGTCTTC +
Preference number: 4 (lower is better)
Translates to: SPHVLDRAAKCTTMAVCQLQVTV*LGLAVF
Trigger: GAAGACAGCAAGCCCAAGCCAAACAGTGACCTGGAG...CTGACATACAGCCATTGTCGTACATTTTGCTGCTCTGTCCAATACATGGGGAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CCA 90 bp GGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACTCCAGGTCACTGTTTaGCTTGGGCTTGCTGTCTTC +
Preference number: 4 (lower is better)
Translates to: GCNRVTCKQTMFGIGLPVLQVTV*LGLAVF
Trigger: GAAGACAGCAAGCCCAAGCCAAACAGTGACCTGGAG...TACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp ACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGCATCTCCGCAGCCCCCTTCTTCTTCAATaGCATCTTCTGAGACGGTGC +
Preference number: 4 (lower is better)
Translates to: TCKQTMFGIGLPVQHLRSPLLLQ*HLLRRC
Trigger: GCACCGTCTCAGAAGATGCCATTGAAGAAGAAGGGG...GCTGCGGAGATGCTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp TGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCCCCTTCTTCTTCAATaGCATCTTCTGAGACGGTGC +
Preference number: 4 (lower is better)
Translates to: WNSYHFSKYSEQCRAGSCPLLLQ*HLLRRC
Trigger: GCACCGTCTCAGAAGATGCCATTGAAGAAGAAGGGG...ACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp TTTACAGTGACATTAATAGTACAAGCCATTCGGGGCCAGAGTCTCCCCATGTATCCCTATCCTATTGTCTaGCAGCCGGAAGGCCTTCCT +
Preference number: 4 (lower is better)
Translates to: FTVTLIVQAIRGQSLPMYPYPIV*QPEGLP
Trigger: AGGAAGGCCTTCCGGCTGCCAGACAATAGGATAGGG...ATACATGGGGAGACTCTGGCCCCGAATGGCTTGTACTATTAATGTCACTGTAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CCA 90 bp TCTCCCCATGTATTGGACAGAGCAGCAAAATGTACGACAATGGCTGTATGTCAGCGAATTGTGGCGTCATaGGATGGTGCTCCATTGCCA +
Preference number: 4 (lower is better)
Translates to: SPHVLDRAAKCTTMAVCQRIVAS*DGAPLP
Trigger: TGGCAATGGAGCACCATCCCATGACGCCACAATTCG...CTGACATACAGCCATTGTCGTACATTTTGCTGCTCTGTCCAATACATGGGGAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CCA 90 bp GGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCCCGCACGGTCAGGTTTaGGTTGTTAATGAAGGACAT +
Preference number: 4 (lower is better)
Translates to: GTLTISPNTVNSAGLGPVPHGQV*VVNEGH
Trigger: ATGTCCTTCATTAACAACCCAAACCTGACCGTGCGG...GACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp TGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGCAGCACTTGAACCTCTaGACACAACCCTCCGTGAAG +
Preference number: 4 (lower is better)
Translates to: CNRVTCKQTMFGIGLPVQQHLNL*TQPSVK
Trigger: CTTCACGGAGGGTTGTGTCCAGAGGTTCAAGTGCTG...CTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp TCAGGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCACAGCACTTGAACCTCTaGACACAACCCTCCGTGAAG +
Preference number: 4 (lower is better)
Translates to: SGCNRVTCKQTMFGIGLPQHLNL*TQPSVK
Trigger: CTTCACGGAGGGTTGTGTCCAGAGGTTCAAGTGCTG...TGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCCTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp TCAGGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCATCCTCGATGTTGACCTaGCAGCACTTGAACCTCTGG +
Preference number: 4 (lower is better)
Translates to: SGCNRVTCKQTMFGIGLPSSMLT*QHLNLW
Trigger: CCAGAGGTTCAAGTGCTGCCAGGTCAACATCGAGGA...TGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCCTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp TGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGTCCTCGATGTTGACCTaGCAGCACTTGAACCTCTGG +
Preference number: 4 (lower is better)
Translates to: CNRVTCKQTMFGIGLPVQSSMLT*QHLNLW
Trigger: CCAGAGGTTCAAGTGCTGCCAGGTCAACATCGAGGA...CTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp TGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCCAGGATGGTACGGATaGTCTTCCTCTGCTCAATGT +
Preference number: 4 (lower is better)
Translates to: WNSYHFSKYSEQCRAGSCPGWYG*SSSAQC
Trigger: ACATTGAGCAGAGGAAGACCATCCGTACCATCCTGG...ACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp ACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGCATCTCCGCAGCCCAGGATGGTACGGATaGTCTTCCTCTGCTCAATGT +
Preference number: 4 (lower is better)
Translates to: TCKQTMFGIGLPVQHLRSPGWYG*SSSAQC
Trigger: ACATTGAGCAGAGGAAGACCATCCGTACCATCCTGG...GCTGCGGAGATGCTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp GGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACCGCATACTCCAGGATaGTACGGATGGTCTTCCTCT +
Preference number: 4 (lower is better)
Translates to: GCNRVTCKQTMFGIGLPVPHTPG*YGWSSS
Trigger: AGAGGAAGACCATCCGTACCATCCTGGAGTATGCGG...TACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp TGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTGCTCGTAAGACACTTTaGAAGGATTGGACGCCACGA +
Preference number: 4 (lower is better)
Translates to: WNSYHFSKYSEQCRAGSCARKTL*KDWTPR
Trigger: TCGTGGCGTCCAATCCTTCCAAAGTGTCTTACGAGC...ACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp ACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGCATCTCCGCAGCGCTCGTAAGACACTTTaGAAGGATTGGACGCCACGA +
Preference number: 4 (lower is better)
Translates to: TCKQTMFGIGLPVQHLRSARKTL*KDWTPR
Trigger: TCGTGGCGTCCAATCCTTCCAAAGTGTCTTACGAGC...GCTGCGGAGATGCTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
3UTR CAA 72 bp CCCTCCATACTATGCTCAGGGAGAGTTTGTGTTGATTaGGTTCAGAGAGACTTTCTGGCATTCGAGTGCAGC +
Preference number: 4 (lower is better)
Translates to: PSILCSGRVCVD*VQRDFLAFECS
Trigger: GCTGCACTCGAATGCCAGAAAGTCTCTCTGAACCAAATCAACACAAACTCTCCCTGAGCATAGTATGGAGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR CAA 72 bp TCTCTTAAAAAGAATAACCACAGGTCAGCTCCTGTTTaGTGCTGTTTGCGATGTTGCCTGCAGGTGGCGCTC +
Preference number: 4 (lower is better)
Translates to: SLKKNNHRSAPV*CCLRCCLQVAL
Trigger: GAGCGCCACCTGCAGGCAACATCGCAAACAGCACAAAACAGGAGCTGACCTGTGGTTATTCTTTTTAAGAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR TCA 90 bp GGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTAGGTCTCGTAAGAAGGTaGAGCCGTCTATGCAGAAAC +
Preference number: 4 (lower is better)
Translates to: GCNRVTCKQTMFGIGLPVGLVRR*SRLCRN
Trigger: GTTTCTGCATAGACGGCTTCACCTTCTTACGAGACC...TACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp TGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGCCAGATAGCTCTCGTTaGAGTTTATGGGCCACACGA +
Preference number: 4 (lower is better)
Translates to: CNRVTCKQTMFGIGLPVQPDSSR*SLWATR
Trigger: TCGTGTGGCCCATAAACTTCAACGAGAGCTATCTGG...CTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp GCCATTTCCGCATTAACAGAACAGGGAACGAGTGGAGGGGTAAGGAAGGAGATAGCAGCGACTGATTCATaGTGGAAAATTTCCTCCCTA +
Preference number: 4 (lower is better)
Translates to: AISALTEQGTSGGVRKEIAATDS*WKISSL
Trigger: TAGGGAGGAAATTTTCCATCATGAATCAGTCGCTGC...TATCTCCTTCCTTACCCCTCCACTCGTTCCCTGTTCTGTTAATGCGGAAATGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR TCA 90 bp TGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCGCTCATTATACTGTTaGTTCTGTCCTTCCGTCCGT +
Preference number: 4 (lower is better)
Translates to: WNSYHFSKYSEQCRAGSCRSLYC*FCPSVR
Trigger: ACGGACGGAAGGACAGAATCAACAGTATAATGAGCG...ACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp CTCACTGACTGGCTGTGGTTTGTTCTATGCAAAACTAGTCAGGTGGACTGTGAGCGCTCATTATACTGTTaGTTCTGTCCTTCCGTCCGT +
Preference number: 4 (lower is better)
Translates to: LTDWLWFVLCKTSQVDCERSLYC*FCPSVR
Trigger: ACGGACGGAAGGACAGAATCAACAGTATAATGAGCG...CTCACAGTCCACCTGACTAGTTTTGCATAGAACAAACCACAGCCAGTCAGTGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR TCA 90 bp CTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCCGAAGGCCACTAGTGTGTTTGTaGCAACGCTCATTATACTGT +
Preference number: 4 (lower is better)
Translates to: LTISPNTVNSAGLGPVRRPLVCL*QRSLYC
Trigger: ACAGTATAATGAGCGTTGTCACAAACACACTAGTGG...CCTTCGGACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp CTCCCTACCCAGAGGTGTATGAAAGACTTGTACACTGAGAGGATTGCAGCCGGTCCACTAGTGTGTTTGTaGCAACGCTCATTATACTGT +
Preference number: 4 (lower is better)
Translates to: LPTQRCMKDLYTERIAAGPLVCL*QRSLYC
Trigger: ACAGTATAATGAGCGTTGTCACAAACACACTAGTGG...ACCGGCTGCAATCCTCTCAGTGTACAAGTCTTTCATACACCTCTGGGTAGGGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp CTCACTGACTGGCTGTGGTTTGTTCTATGCAAAACTAGTCAGGTGGACTGTGAGGGTGACACTCCCAGATaGGGAAAGTATTGGCAAACT +
Preference number: 4 (lower is better)
Translates to: LTDWLWFVLCKTSQVDCEGDTPR*GKYWQT
Trigger: AGTTTGCCAATACTTTCCTCATCTGGGAGTGTCACC...CTCACAGTCCACCTGACTAGTTTTGCATAGAACAAACCACAGCCAGTCAGTGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR TCA 90 bp ACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGCATCTCCGCAGCCTACGAAAGGGTCCATaGCGATCAGGTTCACAATCT +
Preference number: 4 (lower is better)
Translates to: TCKQTMFGIGLPVQHLRSLRKGP*RSGSQS
Trigger: AGATTGTGAACCTGATCGTCATGGACCCTTTCGTAG...GCTGCGGAGATGCTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp TCTCCCCATGTATTGGACAGAGCAGCAAAATGTACGACAATGGCTGTATGTCAGAGGACTTGGCCAATTTaGAGACTCGGAGCAATCGGA +
Preference number: 4 (lower is better)
Translates to: SPHVLDRAAKCTTMAVCQRTWPI*RLGAIG
Trigger: TCCGATTGCTCCGAGTCTTCAAATTGGCCAAGTCCT...CTGACATACAGCCATTGTCGTACATTTTGCTGCTCTGTCCAATACATGGGGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR TCA 90 bp TGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTAATTGTGCTCCACAATaGGGAAGCAGGTTTTCCGCA +
Preference number: 4 (lower is better)
Translates to: WNSYHFSKYSEQCRAGSCNCAPQ*GSRFSA
Trigger: TGCGGAAAACCTGCTTCCTCATTGTGGAGCACAATT...ACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp GCTACAATACATAGCACTTTTATCTCTACCCCAGGGTCAGTTCTCCAGGATGAAAAGAGACAGCCACAATaGGGAAGTCCAACCAGCACC +
Preference number: 4 (lower is better)
Translates to: ATIHSTFISTPGSVLQDEKRQPQ*GSPTST
Trigger: GGTGCTGGTTGGACTTCCTCATTGTGGCTGTCTCTT...TTCATCCTGGAGAACTGACCCTGGGGTAGAGATAAAAGTGCTATGTATTGTAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR TCA 90 bp GGAAGAAGGGAGTGTTTTCACACAACCAGTAGTCATGGCGACTACTGCTCAGGGTTTCTGAAGTCTCGTTaGAGCAGTAGTGGTATTTCC +
Preference number: 4 (lower is better)
Translates to: GRRECFHTTSSHGDYCSGFLKSR*SSSGIS
Trigger: GGAAATACCACTACTGCTTCAACGAGACTTCAGAAA...CCCTGAGCAGTAGTCGCCATGACTACTGGTTGTGTGAAAACACTCCCTTCTTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR TCA 90 bp TGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTTGTCCATCCAGCCTTTaGAGGTTGCCACTTGAAGAA +
Preference number: 4 (lower is better)
Translates to: WNSYHFSKYSEQCRAGSCCPSSL*RLPLEE
Trigger: TTCTTCAAGTGGCAACCTTCAAAGGCTGGATGGACA...ACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp TGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGAGCACTTGGACTCCCTaGCTTCTTTTTGCCTCTTGG +
Preference number: 4 (lower is better)
Translates to: CNRVTCKQTMFGIGLPVQSTWTP*LLFASW
Trigger: CCAAGAGGCAAAAAGAAGTCAGGGAGTCCAAGTGCT...CTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp GAGAGCGTTATTCTACAAATGGAAGAGCCTACAGCCTTATCTCAGCCAACACTGAGCACTTGGACTCCCTaGCTTCTTTTTGCCTCTTGG +
Preference number: 4 (lower is better)
Translates to: ESVILQMEEPTALSQPTLSTWTP*LLFASW
Trigger: CCAAGAGGCAAAAAGAAGTCAGGGAGTCCAAGTGCT...CAGTGTTGGCTGAGATAAGGCTGTAGGCTCTTCCATTTGTAGAATAACGCTCTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR TCA 90 bp TCAGGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAAGCACTTGGACTCCCTaGCTTCTTTTTGCCTCTTGG +
Preference number: 4 (lower is better)
Translates to: SGCNRVTCKQTMFGIGLPSTWTP*LLFASW
Trigger: CCAAGAGGCAAAAAGAAGTCAGGGAGTCCAAGTGCT...TGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCCTGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp TTTACAGTGACATTAATAGTACAAGCCATTCGGGGCCAGAGTCTCCCCATGTATTTCTTCCTGCTTTCATaGACTGGAACCCCTCTGGGC +
Preference number: 4 (lower is better)
Translates to: FTVTLIVQAIRGQSLPMYFFLLS*TGTPLG
Trigger: GCCCAGAGGGGTTCCAGTGCATGAAAGCAGGAAGAA...ATACATGGGGAGACTCTGGCCCCGAATGGCTTGTACTATTAATGTCACTGTAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR GCA 90 bp AATCATAACCATGAACAAGGCAGAAGTAAGGCCAGACCAGCTAGGTTGGTTGAATTCTTCCTGCTTTCATaGACTGGAACCCCTCTGGGC +
Preference number: 4 (lower is better)
Translates to: NHNHEQGRSKARPARLVEFFLLS*TGTPLG
Trigger: GCCCAGAGGGGTTCCAGTGCATGAAAGCAGGAAGAA...TTCAACCAACCTAGCTGGTCTGGCCTTACTTCTGCCTTGTTCATGGTTATGATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR GCA 90 bp TGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTGTTGGGATTTCTTCCTaGTTTCATGCACTGGAACCC +
Preference number: 4 (lower is better)
Translates to: WNSYHFSKYSEQCRAGSCVGISS*FHALEP
Trigger: GGGTTCCAGTGCATGAAAGCAGGAAGAAATCCCAAC...ACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp TTTACAGTGACATTAATAGTACAAGCCATTCGGGGCCAGAGTCTCCCCATGTATTGCCTCCTCCAGTGTTaGCTGGTTCTGCTCTTCGTA +
Preference number: 4 (lower is better)
Translates to: FTVTLIVQAIRGQSLPMYCLLQC*LVLLFV
Trigger: TACGAAGAGCAGAACCAGGCAACACTGGAGGAGGCA...ATACATGGGGAGACTCTGGCCCCGAATGGCTTGTACTATTAATGTCACTGTAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR GCA 90 bp GTAGTGGTCAATTGGTTAATTATGTCTCCCTACCCAGAGGTGTATGAAAGACTTCATCTTCTGAGACGGTaGCCGCCGAAGTGGCCATTG +
Preference number: 4 (lower is better)
Translates to: VVVNWLIMSPYPEVYERLHLLRR*PPKWPL
Trigger: CAATGGCCACTTCGGCGGGCACCGTCTCAGAAGATG...AAGTCTTTCATACACCTCTGGGTAGGGAGACATAATTAACCAATTGACCACTAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp GCTACAATACATAGCACTTTTATCTCTACCCCAGGGTCAGTTCTCCAGGATGAATCAGAGAGCTCCTTCTaGTTCCTCTTCTTCCGTCGG +
Preference number: 4 (lower is better)
Translates to: ATIHSTFISTPGSVLQDESESSF*FLFFRR
Trigger: CCGACGGAAGAAGAGGAAGCAGAAGGAGCTCTCTGA...TTCATCCTGGAGAACTGACCCTGGGGTAGAGATAAAAGTGCTATGTATTGTAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR GCA 90 bp TGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGAGGCCTTCCTTCTCATaGCATCTTCCGACTCTGACT +
Preference number: 4 (lower is better)
Translates to: CNRVTCKQTMFGIGLPVQRPSFS*HLPTLT
Trigger: AGTCAGAGTCGGAAGATGGCATGAGAAGGAAGGCCT...CTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp GGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACGGATCACCGATATCTaGAGGTTGTTCATTTCCCCG +
Preference number: 4 (lower is better)
Translates to: GCNRVTCKQTMFGIGLPVRITDI*RLFISP
Trigger: CGGGGAAATGAACAACCTGCAGATATCGGTGATCCG...TACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp TCAGGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCACGGATCACCGATATCTaGAGGTTGTTCATTTCCCCG +
Preference number: 4 (lower is better)
Translates to: SGCNRVTCKQTMFGIGLPRITDI*RLFISP
Trigger: CGGGGAAATGAACAACCTGCAGATATCGGTGATCCG...TGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCCTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp TCTCCCCATGTATTGGACAGAGCAGCAAAATGTACGACAATGGCTGTATGTCAGAAGTATTCCTCAGGCTaGTCCACTGGGACTTCTTCC +
Preference number: 4 (lower is better)
Translates to: SPHVLDRAAKCTTMAVCQKYSSG*STGTSS
Trigger: GGAAGAAGTCCCAGTGGAGCAGCCTGAGGAATACTT...CTGACATACAGCCATTGTCGTACATTTTGCTGCTCTGTCCAATACATGGGGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR GCA 90 bp GTAGTGGTCAATTGGTTAATTATGTCTCCCTACCCAGAGGTGTATGAAAGACTTTCCTCTGCCCGCTGCTaGTTCTCCTTGTCGGGCTTT +
Preference number: 4 (lower is better)
Translates to: VVVNWLIMSPYPEVYERLSSARC*FSLSGF
Trigger: AAAGCCCGACAAGGAGAAGCAGCAGCGGGCAGAGGA...AAGTCTTTCATACACCTCTGGGTAGGGAGACATAATTAACCAATTGACCACTAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp TTTGGTTGGGTTGTTTTTGTTGGTAGTGGTCAATTGGTTAATTATGTCTCCCTACCTTCCTCTGCCCGCTaGTGCTTCTCCTTGTCGGGC +
Preference number: 4 (lower is better)
Translates to: FGWVVFVGSGQLVNYVSLPSSAR*CFSLSG
Trigger: GCCCGACAAGGAGAAGCAGCAGCGGGCAGAGGAAGG...TAGGGAGACATAATTAACCAATTGACCACTACCAACAAAAACAACCCAACCAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp TCAGGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGGTCACTGTTTGGCTTaGGCTTGCTGTCTTCATCGT +
Preference number: 4 (lower is better)
Translates to: SGCNRVTCKQTMFGIGLPGHCLA*ACCLHR
Trigger: ACGATGAAGACAGCAAGCCCAAGCCAAACAGTGACC...TGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCCTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp GGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCTGGTGTAGCCGTAGTTaGGATTTCTTCCTGCTTTCA +
Preference number: 4 (lower is better)
Translates to: GTLTISPNTVNSAGLGPVWCSRS*DFFLLS
Trigger: TGAAAGCAGGAAGAAATCCCAACTACGGCTACACCA...GACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp TGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGCCCCTTCTTCTTCAATaGCATCTTCTGAGACGGTGC +
Preference number: 4 (lower is better)
Translates to: CNRVTCKQTMFGIGLPVQPLLLQ*HLLRRC
Trigger: GCACCGTCTCAGAAGATGCCATTGAAGAAGAAGGGG...CTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp ACTTTTCTAAAGATCAGGTATCGTTTAGGGCAGCATCAGGCTCCATGCACTCACCCCCTTCTTCTTCAATaGCATCTTCTGAGACGGTGC +
Preference number: 4 (lower is better)
Translates to: TFLKIRYRLGQHQAPCTHPLLLQ*HLLRRC
Trigger: GCACCGTCTCAGAAGATGCCATTGAAGAAGAAGGGG...GTGAGTGCATGGAGCCTGATGCTGCCCTAAACGATACCTGATCTTTAGAAAAGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CCA 90 bp GGAAGAAGGGAGTGTTTTCACACAACCAGTAGTCATGGCGACTACTGCTCAGGGCAATGCAGATGGTTATaGCTAAGTCTACGAAAGGGT +
Preference number: 4 (lower is better)
Translates to: GRRECFHTTSSHGDYCSGQCRWL*LSLRKG
Trigger: ACCCTTTCGTAGACTTAGCCATAACCATCTGCATTG...CCCTGAGCAGTAGTCGCCATGACTACTGGTTGTGTGAAAACACTCCCTTCTTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CCA 90 bp CTCCCTACCCAGAGGTGTATGAAAGACTTGTACACTGAGAGGATTGCAGCCGGTCAATGCAGATGGTTATaGCTAAGTCTACGAAAGGGT +
Preference number: 4 (lower is better)
Translates to: LPTQRCMKDLYTERIAAGQCRWL*LSLRKG
Trigger: ACCCTTTCGTAGACTTAGCCATAACCATCTGCATTG...ACCGGCTGCAATCCTCTCAGTGTACAAGTCTTTCATACACCTCTGGGTAGGGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp TTTACAGTGACATTAATAGTACAAGCCATTCGGGGCCAGAGTCTCCCCATGTATCGAATTGTGGCGTCATaGGATGGTGCTCCATTGCCA +
Preference number: 4 (lower is better)
Translates to: FTVTLIVQAIRGQSLPMYRIVAS*DGAPLP
Trigger: TGGCAATGGAGCACCATCCCATGACGCCACAATTCG...ATACATGGGGAGACTCTGGCCCCGAATGGCTTGTACTATTAATGTCACTGTAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CCA 90 bp GGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTAGACATGTTCGAATTGTaGCGTCATGGGATGGTGCTC +
Preference number: 4 (lower is better)
Translates to: GCNRVTCKQTMFGIGLPVDMFEL*RHGMVL
Trigger: GAGCACCATCCCATGACGCCACAATTCGAACATGTC...TACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp GAGAGCGTTATTCTACAAATGGAAGAGCCTACAGCCTTATCTCAGCCAACACTGGACATGTTCGAATTGTaGCGTCATGGGATGGTGCTC +
Preference number: 4 (lower is better)
Translates to: ESVILQMEEPTALSQPTLDMFEL*RHGMVL
Trigger: GAGCACCATCCCATGACGCCACAATTCGAACATGTC...CAGTGTTGGCTGAGATAAGGCTGTAGGCTCTTCCATTTGTAGAATAACGCTCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CCA 90 bp ACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGCATCTCCGCAGCCCGCACGGTCAGGTTTaGGTTGTTAATGAAGGACAT +
Preference number: 4 (lower is better)
Translates to: TCKQTMFGIGLPVQHLRSPHGQV*VVNEGH
Trigger: ATGTCCTTCATTAACAACCCAAACCTGACCGTGCGG...GCTGCGGAGATGCTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp GTAGTGGTCAATTGGTTAATTATGTCTCCCTACCCAGAGGTGTATGAAAGACTTCTCAGGCTGCTCCACTaGGACTTCTTCCACCTCAGG +
Preference number: 4 (lower is better)
Translates to: VVVNWLIMSPYPEVYERLLRLLH*DFFHLR
Trigger: CCTGAGGTGGAAGAAGTCCCAGTGGAGCAGCCTGAG...AAGTCTTTCATACACCTCTGGGTAGGGAGACATAATTAACCAATTGACCACTAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp GCTACAATACATAGCACTTTTATCTCTACCCCAGGGTCAGTTCTCCAGGATGAACGTGAAGCAGGCGTCTaGATCCAAGTATTCCTCAGG +
Preference number: 4 (lower is better)
Translates to: ATIHSTFISTPGSVLQDEREAGV*IQVFLR
Trigger: CCTGAGGAATACTTGGATCCAGACGCCTGCTTCACG...TTCATCCTGGAGAACTGACCCTGGGGTAGAGATAAAAGTGCTATGTATTGTAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CCA 90 bp AATCATAACCATGAACAAGGCAGAAGTAAGGCCAGACCAGCTAGGTTGGTTGAATCCTCGATGTTGACCTaGCAGCACTTGAACCTCTGG +
Preference number: 4 (lower is better)
Translates to: NHNHEQGRSKARPARLVESSMLT*QHLNLW
Trigger: CCAGAGGTTCAAGTGCTGCCAGGTCAACATCGAGGA...TTCAACCAACCTAGCTGGTCTGGCCTTACTTCTGCCTTGTTCATGGTTATGATT
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CCA 90 bp TCAGGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCACCAGGATGGTACGGATaGTCTTCCTCTGCTCAATGT +
Preference number: 4 (lower is better)
Translates to: SGCNRVTCKQTMFGIGLPPGWYG*SSSAQC
Trigger: ACATTGAGCAGAGGAAGACCATCCGTACCATCCTGG...TGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCCTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp GGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTAGCTCGTAAGACACTTTaGAAGGATTGGACGCCACGA +
Preference number: 4 (lower is better)
Translates to: GCNRVTCKQTMFGIGLPVARKTL*KDWTPR
Trigger: TCGTGGCGTCCAATCCTTCCAAAGTGTCTTACGAGC...TACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp TGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGGCTCGTAAGACACTTTaGAAGGATTGGACGCCACGA +
Preference number: 4 (lower is better)
Translates to: CNRVTCKQTMFGIGLPVQARKTL*KDWTPR
Trigger: TCGTGGCGTCCAATCCTTCCAAAGTGTCTTACGAGC...CTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp TTTGGTTGGGTTGTTTTTGTTGGTAGTGGTCAATTGGTTAATTATGTCTCCCTAAGGGGAGGGAGGCTGTaGACGGGGTGCTCTCCTTCT +
Preference number: 4 (lower is better)
Translates to: FGWVVFVGSGQLVNYVSLRGGRL*TGCSPS
Trigger: AGAAGGAGAGCACCCCGTCCACAGCCTCCCTCCCCT...TAGGGAGACATAATTAACCAATTGACCACTACCAACAAAAACAACCCAACCAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp AATGGAAGAGCCTACAGCCTTATCTCAGCCAACACTGCTGTCCTTGCCAGCCCTAGTTTGTTTTATTGTTaGTATACTCCTCCCAGTCGA +
Preference number: 4 (lower is better)
Translates to: NGRAYSLISANTAVLASPSLFYC*YTPPSR
Trigger: TCGACTGGGAGGAGTATATCAACAATAAAACAAACT...AGGGCTGGCAAGGACAGCAGTGTTGGCTGAGATAAGGCTGTAGGCTCTTCCATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR TCA 90 bp GTAGTGGTCAATTGGTTAATTATGTCTCCCTACCCAGAGGTGTATGAAAGACTTAGTAGTCCTGAGTCATaGGGCGGAACAGTGCCAGGA +
Preference number: 4 (lower is better)
Translates to: VVVNWLIMSPYPEVYERLSSPES*GGTVPG
Trigger: TCCTGGCACTGTTCCGCCTCATGACTCAGGACTACT...AAGTCTTTCATACACCTCTGGGTAGGGAGACATAATTAACCAATTGACCACTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp GGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCATGCTGAGCAGCGACTaGTTCATGATGGAAAATTTC +
Preference number: 4 (lower is better)
Translates to: GTLTISPNTVNSAGLGPVMLSSD*FMMENF
Trigger: GAAATTTTCCATCATGAATCAGTCGCTGCTCAGCAT...GACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp GGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACGCTCATTATACTGTTaGTTCTGTCCTTCCGTCCGT +
Preference number: 4 (lower is better)
Translates to: GCNRVTCKQTMFGIGLPVRSLYC*FCPSVR
Trigger: ACGGACGGAAGGACAGAATCAACAGTATAATGAGCG...TACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp GAGAGCGTTATTCTACAAATGGAAGAGCCTACAGCCTTATCTCAGCCAACACTGCGCTCATTATACTGTTaGTTCTGTCCTTCCGTCCGT +
Preference number: 4 (lower is better)
Translates to: ESVILQMEEPTALSQPTLRSLYC*FCPSVR
Trigger: ACGGACGGAAGGACAGAATCAACAGTATAATGAGCG...CAGTGTTGGCTGAGATAAGGCTGTAGGCTCTTCCATTTGTAGAATAACGCTCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR TCA 90 bp GTAGTGGTCAATTGGTTAATTATGTCTCCCTACCCAGAGGTGTATGAAAGACTTGGTGGGCACTTTCTCTaGGACTCTTCCAGCTCTTCC +
Preference number: 4 (lower is better)
Translates to: VVVNWLIMSPYPEVYERLGGHFL*DSSSSS
Trigger: GGAAGAGCTGGAAGAGTCTCAGAGAAAGTGCCCACC...AAGTCTTTCATACACCTCTGGGTAGGGAGACATAATTAACCAATTGACCACTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp GAGAGCGTTATTCTACAAATGGAAGAGCCTACAGCCTTATCTCAGCCAACACTGGGTGACACTCCCAGATaGGGAAAGTATTGGCAAACT +
Preference number: 4 (lower is better)
Translates to: ESVILQMEEPTALSQPTLGDTPR*GKYWQT
Trigger: AGTTTGCCAATACTTTCCTCATCTGGGAGTGTCACC...CAGTGTTGGCTGAGATAAGGCTGTAGGCTCTTCCATTTGTAGAATAACGCTCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR TCA 90 bp TCAGGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGGTGACACTCCCAGATaGGGAAAGTATTGGCAAACT +
Preference number: 4 (lower is better)
Translates to: SGCNRVTCKQTMFGIGLPGDTPR*GKYWQT
Trigger: AGTTTGCCAATACTTTCCTCATCTGGGAGTGTCACC...TGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCCTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp ACTTTTCTAAAGATCAGGTATCGTTTAGGGCAGCATCAGGCTCCATGCACTCACCTACGAAAGGGTCCATaGCGATCAGGTTCACAATCT +
Preference number: 4 (lower is better)
Translates to: TFLKIRYRLGQHQAPCTHLRKGP*RSGSQS
Trigger: AGATTGTGAACCTGATCGTCATGGACCCTTTCGTAG...GTGAGTGCATGGAGCCTGATGCTGCCCTAAACGATACCTGATCTTTAGAAAAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR TCA 90 bp TCTCCCCATGTATTGGACAGAGCAGCAAAATGTACGACAATGGCTGTATGTCAGCTACGAAAGGGTCCATaGCGATCAGGTTCACAATCT +
Preference number: 4 (lower is better)
Translates to: SPHVLDRAAKCTTMAVCQLRKGP*RSGSQS
Trigger: AGATTGTGAACCTGATCGTCATGGACCCTTTCGTAG...CTGACATACAGCCATTGTCGTACATTTTGCTGCTCTGTCCAATACATGGGGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR TCA 90 bp GGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACTACGAAAGGGTCCATaGCGATCAGGTTCACAATCT +
Preference number: 4 (lower is better)
Translates to: GCNRVTCKQTMFGIGLPVLRKGP*RSGSQS
Trigger: AGATTGTGAACCTGATCGTCATGGACCCTTTCGTAG...TACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp TGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGAATTGTGCTCCACAATaGGGAAGCAGGTTTTCCGCA +
Preference number: 4 (lower is better)
Translates to: CNRVTCKQTMFGIGLPVQNCAPQ*GSRFSA
Trigger: TGCGGAAAACCTGCTTCCTCATTGTGGAGCACAATT...CTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp GGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCTTTCTGAAGTCTCGTTaGAGCAGTAGTGGTATTTCC +
Preference number: 4 (lower is better)
Translates to: GTLTISPNTVNSAGLGPVFLKSR*SSSGIS
Trigger: GGAAATACCACTACTGCTTCAACGAGACTTCAGAAA...GACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp TCAGGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCATGTCCATCCAGCCTTTaGAGGTTGCCACTTGAAGAA +
Preference number: 4 (lower is better)
Translates to: SGCNRVTCKQTMFGIGLPCPSSL*RLPLEE
Trigger: TTCTTCAAGTGGCAACCTTCAAAGGCTGGATGGACA...TGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCCTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp GCCATTTCCGCATTAACAGAACAGGGAACGAGTGGAGGGGTAAGGAAGGAGATAGTCATGAAGATGTCCTaGCCTCCAAACTTTTTCTTC +
Preference number: 4 (lower is better)
Translates to: AISALTEQGTSGGVRKEIVMKMS*PPNFFF
Trigger: GAAGAAAAAGTTTGGAGGTCAGGACATCTTCATGAC...TATCTCCTTCCTTACCCCTCCACTCGTTCCCTGTTCTGTTAATGCGGAAATGGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR TCA 90 bp CCGGTATGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGGTCATGAAGATGTCCTaGCCTCCAAACTTTTTCTTC +
Preference number: 4 (lower is better)
Translates to: PVWNSYHFSKYSEQCRAGVMKMS*PPNFFF
Trigger: GAAGAAAAAGTTTGGAGGTCAGGACATCTTCATGAC...CCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCATACCGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp TGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTTGTTCCAGCCAATGGTaGAATAGTAGTGTCTCAAGG +
Preference number: 4 (lower is better)
Translates to: WNSYHFSKYSEQCRAGSCCSSQW*NSSVSR
Trigger: CCTTGAGACACTACTATTTCACCATTGGCTGGAACA...ACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp CCGGTATGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGCGAAGTACTTCTCAATaGTATCAGCCAGGAACATTC +
Preference number: 4 (lower is better)
Translates to: PVWNSYHFSKYSEQCRAGRSTSQ*YQPGTF
Trigger: GAATGTTCCTGGCTGATATCATTGAGAAGTACTTCG...CCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCATACCGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp GGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCCGAAGTACTTCTCAATaGTATCAGCCAGGAACATTC +
Preference number: 4 (lower is better)
Translates to: GTLTISPNTVNSAGLGPVRSTSQ*YQPGTF
Trigger: GAATGTTCCTGGCTGATATCATTGAGAAGTACTTCG...GACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp TTTGGTTGGGTTGTTTTTGTTGGTAGTGGTCAATTGGTTAATTATGTCTCCCTATCCCGCAGTCCCCTTTaGAGCCACTTCCTGGGTGCT +
Preference number: 4 (lower is better)
Translates to: FGWVVFVGSGQLVNYVSLSRSPL*SHFLGA
Trigger: AGCACCCAGGAAGTGGCTTCAAAGGGGACTGCGGGA...TAGGGAGACATAATTAACCAATTGACCACTACCAACAAAAACAACCCAACCAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp AATCATAACCATGAACAAGGCAGAAGTAAGGCCAGACCAGCTAGGTTGGTTGAAGCTTACAGTACTCGATaGACTGGGTGGCATCAGGAT +
Preference number: 4 (lower is better)
Translates to: NHNHEQGRSKARPARLVEAYSTR*TGWHQD
Trigger: ATCCTGATGCCACCCAGTTCATCGAGTACTGTAAGC...TTCAACCAACCTAGCTGGTCTGGCCTTACTTCTGCCTTGTTCATGGTTATGATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR TCA 90 bp AATCATAACCATGAACAAGGCAGAAGTAAGGCCAGACCAGCTAGGTTGGTTGAAAGCACTTGGACTCCCTaGCTTCTTTTTGCCTCTTGG +
Preference number: 4 (lower is better)
Translates to: NHNHEQGRSKARPARLVESTWTP*LLFASW
Trigger: CCAAGAGGCAAAAAGAAGTCAGGGAGTCCAAGTGCT...TTCAACCAACCTAGCTGGTCTGGCCTTACTTCTGCCTTGTTCATGGTTATGATT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR GCA 90 bp GTAGTGGTCAATTGGTTAATTATGTCTCCCTACCCAGAGGTGTATGAAAGACTTTTCCCCATGAAGAGCTaGAGGCCAATCAGGGCGAAG +
Preference number: 4 (lower is better)
Translates to: VVVNWLIMSPYPEVYERLFPMKS*RPIRAK
Trigger: CTTCGCCCTGATTGGCCTGCAGCTCTTCATGGGGAA...AAGTCTTTCATACACCTCTGGGTAGGGAGACATAATTAACCAATTGACCACTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp GGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTAGTTGGGATTTCTTCCTaGTTTCATGCACTGGAACCC +
Preference number: 4 (lower is better)
Translates to: GCNRVTCKQTMFGIGLPVVGISS*FHALEP
Trigger: GGGTTCCAGTGCATGAAAGCAGGAAGAAATCCCAAC...TACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp TGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGGTTGGGATTTCTTCCTaGTTTCATGCACTGGAACCC +
Preference number: 4 (lower is better)
Translates to: CNRVTCKQTMFGIGLPVQVGISS*FHALEP
Trigger: GGGTTCCAGTGCATGAAAGCAGGAAGAAATCCCAAC...CTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp TCAGGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTTGGGATTTCTTCCTaGTTTCATGCACTGGAACCC +
Preference number: 4 (lower is better)
Translates to: SGCNRVTCKQTMFGIGLPVGISS*FHALEP
Trigger: GGGTTCCAGTGCATGAAAGCAGGAAGAAATCCCAAC...TGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCCTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp TTTGGTTGGGTTGTTTTTGTTGGTAGTGGTCAATTGGTTAATTATGTCTCCCTATGCGCCTCCTCCTGCTaGTTCTTGAGCTGCTCCAGC +
Preference number: 4 (lower is better)
Translates to: FGWVVFVGSGQLVNYVSLCASSC*FLSCSS
Trigger: GCTGGAGCAGCTCAAGAAGCAGCAGGAGGAGGCGCA...TAGGGAGACATAATTAACCAATTGACCACTACCAACAAAAACAACCCAACCAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp TTTACAGTGACATTAATAGTACAAGCCATTCGGGGCCAGAGTCTCCCCATGTATCGGATCACCGATATCTaGAGGTTGTTCATTTCCCCG +
Preference number: 4 (lower is better)
Translates to: FTVTLIVQAIRGQSLPMYRITDI*RLFISP
Trigger: CGGGGAAATGAACAACCTGCAGATATCGGTGATCCG...ATACATGGGGAGACTCTGGCCCCGAATGGCTTGTACTATTAATGTCACTGTAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR GCA 90 bp GTAGTGGTCAATTGGTTAATTATGTCTCCCTACCCAGAGGTGTATGAAAGACTTGCCTGCATGAAGGCATaGACCTTCACTTTGGCCCAG +
Preference number: 4 (lower is better)
Translates to: VVVNWLIMSPYPEVYERLACMKA*TFTLAQ
Trigger: CTGGGCCAAAGTGAAGGTGCATGCCTTCATGCAGGC...AAGTCTTTCATACACCTCTGGGTAGGGAGACATAATTAACCAATTGACCACTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp AATCATAACCATGAACAAGGCAGAAGTAAGGCCAGACCAGCTAGGTTGGTTGAAAAGTATTCCTCAGGCTaGTCCACTGGGACTTCTTCC +
Preference number: 4 (lower is better)
Translates to: NHNHEQGRSKARPARLVEKYSSG*STGTSS
Trigger: GGAAGAAGTCCCAGTGGAGCAGCCTGAGGAATACTT...TTCAACCAACCTAGCTGGTCTGGCCTTACTTCTGCCTTGTTCATGGTTATGATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR GCA 90 bp CTCACTGACTGGCTGTGGTTTGTTCTATGCAAAACTAGTCAGGTGGACTGTGAGGTCTCAAACCAATTGTaGTCCACAATGAGGAAGCAG +
Preference number: 4 (lower is better)
Translates to: LTDWLWFVLCKTSQVDCEVSNQL*STMRKQ
Trigger: CTGCTTCCTCATTGTGGAGCACAATTGGTTTGAGAC...CTCACAGTCCACCTGACTAGTTTTGCATAGAACAAACCACAGCCAGTCAGTGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR GCA 90 bp ACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGCATCTCCGCAGCGTCTCAAACCAATTGTaGTCCACAATGAGGAAGCAG +
Preference number: 4 (lower is better)
Translates to: TCKQTMFGIGLPVQHLRSVSNQL*STMRKQ
Trigger: CTGCTTCCTCATTGTGGAGCACAATTGGTTTGAGAC...GCTGCGGAGATGCTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp TGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGTCCCTGACTTCTTTTTaGCTCTTGGCTCTTTCCCTC +
Preference number: 4 (lower is better)
Translates to: CNRVTCKQTMFGIGLPVQSLTSF*LLALSL
Trigger: GAGGGAAAGAGCCAAGAGGCAAAAAGAAGTCAGGGA...CTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp AATCATAACCATGAACAAGGCAGAAGTAAGGCCAGACCAGCTAGGTTGGTTGAAGGTCACTGTTTGGCTTaGGCTTGCTGTCTTCATCGT +
Preference number: 4 (lower is better)
Translates to: NHNHEQGRSKARPARLVEGHCLA*ACCLHR
Trigger: ACGATGAAGACAGCAAGCCCAAGCCAAACAGTGACC...TTCAACCAACCTAGCTGGTCTGGCCTTACTTCTGCCTTGTTCATGGTTATGATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CCA 90 bp GTAGTGGTCAATTGGTTAATTATGTCTCCCTACCCAGAGGTGTATGAAAGACTTCCTGCTTTCATGCACTaGAACCCCTCTGGGCATTGC +
Preference number: 4 (lower is better)
Translates to: VVVNWLIMSPYPEVYERLPAFMH*NPSGHC
Trigger: GCAATGCCCAGAGGGGTTCCAGTGCATGAAAGCAGG...AAGTCTTTCATACACCTCTGGGTAGGGAGACATAATTAACCAATTGACCACTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp TGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTTGGTGTAGCCGTAGTTaGGATTTCTTCCTGCTTTCA +
Preference number: 4 (lower is better)
Translates to: WNSYHFSKYSEQCRAGSCWCSRS*DFFLLS
Trigger: TGAAAGCAGGAAGAAATCCCAACTACGGCTACACCA...ACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp GCTACAATACATAGCACTTTTATCTCTACCCCAGGGTCAGTTCTCCAGGATGAAGACATGTTCGAATTGTaGCGTCATGGGATGGTGCTC +
Preference number: 4 (lower is better)
Translates to: ATIHSTFISTPGSVLQDEDMFEL*RHGMVL
Trigger: GAGCACCATCCCATGACGCCACAATTCGAACATGTC...TTCATCCTGGAGAACTGACCCTGGGGTAGAGATAAAAGTGCTATGTATTGTAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CCA 90 bp CCGGTATGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTTAATGAAGGACATGTaGTCCTCGTCGATGATGTAC +
Preference number: 4 (lower is better)
Translates to: PVWNSYHFSKYSEQCRAGLMKDM*SSSMMY
Trigger: GTACATCATCGACGAGGACCACATGTCCTTCATTAA...CCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCATACCGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp TCAGGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCACCGCACGGTCAGGTTTaGGTTGTTAATGAAGGACAT +
Preference number: 4 (lower is better)
Translates to: SGCNRVTCKQTMFGIGLPPHGQV*VVNEGH
Trigger: ATGTCCTTCATTAACAACCCAAACCTGACCGTGCGG...TGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCCTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp CTCCCTACCCAGAGGTGTATGAAAGACTTGTACACTGAGAGGATTGCAGCCGGTTCAAAGACAATCCCTTaGATTTTGTTCAAAGGTCGG +
Preference number: 4 (lower is better)
Translates to: LPTQRCMKDLYTERIAAGSKTIP*ILFKGR
Trigger: CCGACCTTTGAACAAAATCCAAGGGATTGTCTTTGA...ACCGGCTGCAATCCTCTCAGTGTACAAGTCTTTCATACACCTCTGGGTAGGGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp GGAAGAAGGGAGTGTTTTCACACAACCAGTAGTCATGGCGACTACTGCTCAGGGTCAAAGACAATCCCTTaGATTTTGTTCAAAGGTCGG +
Preference number: 4 (lower is better)
Translates to: GRRECFHTTSSHGDYCSGSKTIP*ILFKGR
Trigger: CCGACCTTTGAACAAAATCCAAGGGATTGTCTTTGA...CCCTGAGCAGTAGTCGCCATGACTACTGGTTGTGTGAAAACACTCCCTTCTTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR TCA 90 bp GTAGTGGTCAATTGGTTAATTATGTCTCCCTACCCAGAGGTGTATGAAAGACTTGCCATCTTCCGACTCTaGCTTAAACACCTTCTCGGG +
Preference number: 4 (lower is better)
Translates to: VVVNWLIMSPYPEVYERLAIFRL*LKHLLG
Trigger: CCCGAGAAGGTGTTTAAGTCAGAGTCGGAAGATGGC...AAGTCTTTCATACACCTCTGGGTAGGGAGACATAATTAACCAATTGACCACTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp TGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGGCAGCGACTGATTCATaGTGGAAAATTTCCTCCCTA +
Preference number: 4 (lower is better)
Translates to: CNRVTCKQTMFGIGLPVQAATDS*WKISSL
Trigger: TAGGGAGGAAATTTTCCATCATGAATCAGTCGCTGC...CTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp CTCACTGACTGGCTGTGGTTTGTTCTATGCAAAACTAGTCAGGTGGACTGTGAGATGCTGAGCAGCGACTaGTTCATGATGGAAAATTTC +
Preference number: 4 (lower is better)
Translates to: LTDWLWFVLCKTSQVDCEMLSSD*FMMENF
Trigger: GAAATTTTCCATCATGAATCAGTCGCTGCTCAGCAT...CTCACAGTCCACCTGACTAGTTTTGCATAGAACAAACCACAGCCAGTCAGTGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR TCA 90 bp AATCATAACCATGAACAAGGCAGAAGTAAGGCCAGACCAGCTAGGTTGGTTGAACTACGAAAGGGTCCATaGCGATCAGGTTCACAATCT +
Preference number: 4 (lower is better)
Translates to: NHNHEQGRSKARPARLVELRKGP*RSGSQS
Trigger: AGATTGTGAACCTGATCGTCATGGACCCTTTCGTAG...TTCAACCAACCTAGCTGGTCTGGCCTTACTTCTGCCTTGTTCATGGTTATGATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR TCA 90 bp ACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGCATCTCCGCAGCGTCATGAAGATGTCCTaGCCTCCAAACTTTTTCTTC +
Preference number: 4 (lower is better)
Translates to: TCKQTMFGIGLPVQHLRSVMKMS*PPNFFF
Trigger: GAAGAAAAAGTTTGGAGGTCAGGACATCTTCATGAC...GCTGCGGAGATGCTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp TGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTGTCATGAAGATGTCCTaGCCTCCAAACTTTTTCTTC +
Preference number: 4 (lower is better)
Translates to: WNSYHFSKYSEQCRAGSCVMKMS*PPNFFF
Trigger: GAAGAAAAAGTTTGGAGGTCAGGACATCTTCATGAC...ACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp TGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGTGTTCCAGCCAATGGTaGAATAGTAGTGTCTCAAGG +
Preference number: 4 (lower is better)
Translates to: CNRVTCKQTMFGIGLPVQCSSQW*NSSVSR
Trigger: CCTTGAGACACTACTATTTCACCATTGGCTGGAACA...CTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp TCAGGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCATGTTCCAGCCAATGGTaGAATAGTAGTGTCTCAAGG +
Preference number: 4 (lower is better)
Translates to: SGCNRVTCKQTMFGIGLPCSSQW*NSSVSR
Trigger: CCTTGAGACACTACTATTTCACCATTGGCTGGAACA...TGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCCTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp TCTCCCCATGTATTGGACAGAGCAGCAAAATGTACGACAATGGCTGTATGTCAGTGTTCCAGCCAATGGTaGAATAGTAGTGTCTCAAGG +
Preference number: 4 (lower is better)
Translates to: SPHVLDRAAKCTTMAVCQCSSQW*NSSVSR
Trigger: CCTTGAGACACTACTATTTCACCATTGGCTGGAACA...CTGACATACAGCCATTGTCGTACATTTTGCTGCTCTGTCCAATACATGGGGAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR TCA 90 bp ACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGCATCTCCGCAGCCGAAGTACTTCTCAATaGTATCAGCCAGGAACATTC +
Preference number: 4 (lower is better)
Translates to: TCKQTMFGIGLPVQHLRSRSTSQ*YQPGTF
Trigger: GAATGTTCCTGGCTGATATCATTGAGAAGTACTTCG...GCTGCGGAGATGCTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp GTAGTGGTCAATTGGTTAATTATGTCTCCCTACCCAGAGGTGTATGAAAGACTTTGTTTGGCTTGGGCTTaGTGTCTTCATCGTCCTCCC +
Preference number: 4 (lower is better)
Translates to: VVVNWLIMSPYPEVYERLCLAWA*CLHRPP
Trigger: GGGAGGACGATGAAGACAGCAAGCCCAAGCCAAACA...AAGTCTTTCATACACCTCTGGGTAGGGAGACATAATTAACCAATTGACCACTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp GTAGTGGTCAATTGGTTAATTATGTCTCCCTACCCAGAGGTGTATGAAAGACTTCCGTTGCTTGAAGTGTaGCTGCATGAAGGCATGCAC +
Preference number: 4 (lower is better)
Translates to: VVVNWLIMSPYPEVYERLPLLEV*LHEGMH
Trigger: GTGCATGCCTTCATGCAGGCACACTTCAAGCAACGG...AAGTCTTTCATACACCTCTGGGTAGGGAGACATAATTAACCAATTGACCACTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp GTAGTGGTCAATTGGTTAATTATGTCTCCCTACCCAGAGGTGTATGAAAGACTTGGATCCACCACGACTTaGCTAGTCCTTCCTCGATGT +
Preference number: 4 (lower is better)
Translates to: VVVNWLIMSPYPEVYERLGSTTT*LVLPRC
Trigger: ACATCGAGGAAGGACTAGGCAAGTCGTGGTGGATCC...AAGTCTTTCATACACCTCTGGGTAGGGAGACATAATTAACCAATTGACCACTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp GTAGTGGTCAATTGGTTAATTATGTCTCCCTACCCAGAGGTGTATGAAAGACTTCCAGCCTTTGAAGGTTaGCACTTGAAGAAGGGCCAG +
Preference number: 4 (lower is better)
Translates to: VVVNWLIMSPYPEVYERLPAFEG*HLKKGQ
Trigger: CTGGCCCTTCTTCAAGTGGCAACCTTCAAAGGCTGG...AAGTCTTTCATACACCTCTGGGTAGGGAGACATAATTAACCAATTGACCACTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp TTTGGTTGGGTTGTTTTTGTTGGTAGTGGTCAATTGGTTAATTATGTCTCCCTATCCTCTGCCCGCTGCTaGTTCTCCTTGTCGGGCTTT +
Preference number: 4 (lower is better)
Translates to: FGWVVFVGSGQLVNYVSLSSARC*FSLSGF
Trigger: AAAGCCCGACAAGGAGAAGCAGCAGCGGGCAGAGGA...TAGGGAGACATAATTAACCAATTGACCACTACCAACAAAAACAACCCAACCAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp TTTACAGTGACATTAATAGTACAAGCCATTCGGGGCCAGAGTCTCCCCATGTATTCCCTGACTTCTTTTTaGCTCTTGGCTCTTTCCCTC +
Preference number: 4 (lower is better)
Translates to: FTVTLIVQAIRGQSLPMYSLTSF*LLALSL
Trigger: GAGGGAAAGAGCCAAGAGGCAAAAAGAAGTCAGGGA...ATACATGGGGAGACTCTGGCCCCGAATGGCTTGTACTATTAATGTCACTGTAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CCA 90 bp GGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCGATTGTCTTCAGGCCTaGGATTACCGAAATAGTTTT +
Preference number: 4 (lower is better)
Translates to: GTLTISPNTVNSAGLGPVDCLQA*DYRNSF
Trigger: AAAACTATTTCGGTAATCCCAGGCCTGAAGACAATC...GACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000082209.13
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp CCGGTATGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGGATTGTCTTCAGGCCTaGGATTACCGAAATAGTTTT +
Preference number: 4 (lower is better)
Translates to: PVWNSYHFSKYSEQCRAGDCLQA*DYRNSF
Trigger: AAAACTATTTCGGTAATCCCAGGCCTGAAGACAATC...CCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCATACCGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000082209.13
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp GAGAGCGTTATTCTACAAATGGAAGAGCCTACAGCCTTATCTCAGCCAACACTGTGGTGTAGCCGTAGTTaGGATTTCTTCCTGCTTTCA +
Preference number: 4 (lower is better)
Translates to: ESVILQMEEPTALSQPTLWCSRS*DFFLLS
Trigger: TGAAAGCAGGAAGAAATCCCAACTACGGCTACACCA...CAGTGTTGGCTGAGATAAGGCTGTAGGCTCTTCCATTTGTAGAATAACGCTCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CCA 90 bp ACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGCATCTCCGCAGCCAATGCAGATGGTTATaGCTAAGTCTACGAAAGGGT +
Preference number: 4 (lower is better)
Translates to: TCKQTMFGIGLPVQHLRSQCRWL*LSLRKG
Trigger: ACCCTTTCGTAGACTTAGCCATAACCATCTGCATTG...GCTGCGGAGATGCTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp TGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTTTAATGAAGGACATGTaGTCCTCGTCGATGATGTAC +
Preference number: 4 (lower is better)
Translates to: WNSYHFSKYSEQCRAGSCLMKDM*SSSMMY
Trigger: GTACATCATCGACGAGGACCACATGTCCTTCATTAA...ACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp TTTGGTTGGGTTGTTTTTGTTGGTAGTGGTCAATTGGTTAATTATGTCTCCCTACTCAGGCTGCTCCACTaGGACTTCTTCCACCTCAGG +
Preference number: 4 (lower is better)
Translates to: FGWVVFVGSGQLVNYVSLLRLLH*DFFHLR
Trigger: CCTGAGGTGGAAGAAGTCCCAGTGGAGCAGCCTGAG...TAGGGAGACATAATTAACCAATTGACCACTACCAACAAAAACAACCCAACCAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp GTAGTGGTCAATTGGTTAATTATGTCTCCCTACCCAGAGGTGTATGAAAGACTTCGTGAAGCAGGCGTCTaGATCCAAGTATTCCTCAGG +
Preference number: 4 (lower is better)
Translates to: VVVNWLIMSPYPEVYERLREAGV*IQVFLR
Trigger: CCTGAGGAATACTTGGATCCAGACGCCTGCTTCACG...AAGTCTTTCATACACCTCTGGGTAGGGAGACATAATTAACCAATTGACCACTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp GGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCTCAAAGACAATCCCTTaGATTTTGTTCAAAGGTCGG +
Preference number: 4 (lower is better)
Translates to: GTLTISPNTVNSAGLGPVSKTIP*ILFKGR
Trigger: CCGACCTTTGAACAAAATCCAAGGGATTGTCTTTGA...GACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
3UTR CAA 72 bp CGATTCCCTCCATACTATGCTCAGGGAGAGTTTGTGTaGATTTGGTTCAGAGAGACTTTCTGGCATTCGAGT +
Preference number: 4 (lower is better)
Translates to: RFPPYYAQGEFV*IWFRETFWHSS
Trigger: ACTCGAATGCCAGAAAGTCTCTCTGAACCAAATCAACACAAACTCTCCCTGAGCATAGTATGGAGGGAATCG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR CAA 72 bp GAAGATAGAAAGCTCTGCTCACTGACTGGCTGTGGTTaGTTCTATGCAAAACTAGTCAGGTGGACTGTGAGA +
Preference number: 4 (lower is better)
Translates to: EDRKLCSLTGCG*FYAKLVRWTVR
Trigger: TCTCACAGTCCACCTGACTAGTTTTGCATAGAACAAACCACAGCCAGTCAGTGAGCAGAGCTTTCTATCTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR CAA 72 bp GACACCTACCAGGTCTCACTCTACCGAAGCAGACACTaGCAAAATATGGGAGACGGTAACTTAAAATCTGTC +
Preference number: 4 (lower is better)
Translates to: DTYQVSLYRSRH*QNMGDGNLKSV
Trigger: GACAGATTTTAAGTTACCGTCTCCCATATTTTGCAAGTGTCTGCTTCGGTAGAGTGAGACCTGGTAGGTGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201438.4
CDS-3UTR TCA 90 bp GTAGTGGTCAATTGGTTAATTATGTCTCCCTACCCAGAGGTGTATGAAAGACTTGGTCTCGTAAGAAGGTaGAGCCGTCTATGCAGAAAC +
Preference number: 4 (lower is better)
Translates to: VVVNWLIMSPYPEVYERLGLVRR*SRLCRN
Trigger: GTTTCTGCATAGACGGCTTCACCTTCTTACGAGACC...AAGTCTTTCATACACCTCTGGGTAGGGAGACATAATTAACCAATTGACCACTAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp GGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCAGTTTGTTTTATTGTTaGTATACTCCTCCCAGTCGA +
Preference number: 4 (lower is better)
Translates to: GTLTISPNTVNSAGLGPVSLFYC*YTPPSR
Trigger: TCGACTGGGAGGAGTATATCAACAATAAAACAAACT...GACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp GCCATTTCCGCATTAACAGAACAGGGAACGAGTGGAGGGGTAAGGAAGGAGATAAGTTTGTTTTATTGTTaGTATACTCCTCCCAGTCGA +
Preference number: 4 (lower is better)
Translates to: AISALTEQGTSGGVRKEISLFYC*YTPPSR
Trigger: TCGACTGGGAGGAGTATATCAACAATAAAACAAACT...TATCTCCTTCCTTACCCCTCCACTCGTTCCCTGTTCTGTTAATGCGGAAATGGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR TCA 90 bp GAGAGCGTTATTCTACAAATGGAAGAGCCTACAGCCTTATCTCAGCCAACACTGATGCTGAGCAGCGACTaGTTCATGATGGAAAATTTC +
Preference number: 4 (lower is better)
Translates to: ESVILQMEEPTALSQPTLMLSSD*FMMENF
Trigger: GAAATTTTCCATCATGAATCAGTCGCTGCTCAGCAT...CAGTGTTGGCTGAGATAAGGCTGTAGGCTCTTCCATTTGTAGAATAACGCTCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR TCA 90 bp GGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTAATGCTGAGCAGCGACTaGTTCATGATGGAAAATTTC +
Preference number: 4 (lower is better)
Translates to: GCNRVTCKQTMFGIGLPVMLSSD*FMMENF
Trigger: GAAATTTTCCATCATGAATCAGTCGCTGCTCAGCAT...TACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp TGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGCCACTAGTGTGTTTGTaGCAACGCTCATTATACTGT +
Preference number: 4 (lower is better)
Translates to: CNRVTCKQTMFGIGLPVQPLVCL*QRSLYC
Trigger: ACAGTATAATGAGCGTTGTCACAAACACACTAGTGG...CTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp TTTGGTTGGGTTGTTTTTGTTGGTAGTGGTCAATTGGTTAATTATGTCTCCCTATGTGGTCCTCGTCGATaGTGTACTTCTCCACGCTGC +
Preference number: 4 (lower is better)
Translates to: FGWVVFVGSGQLVNYVSLCGPRR*CTSPRC
Trigger: GCAGCGTGGAGAAGTACATCATCGACGAGGACCACA...TAGGGAGACATAATTAACCAATTGACCACTACCAACAAAAACAACCCAACCAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp TGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGTTTCTGAAGTCTCGTTaGAGCAGTAGTGGTATTTCC +
Preference number: 4 (lower is better)
Translates to: CNRVTCKQTMFGIGLPVQFLKSR*SSSGIS
Trigger: GGAAATACCACTACTGCTTCAACGAGACTTCAGAAA...CTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp ACTTTTCTAAAGATCAGGTATCGTTTAGGGCAGCATCAGGCTCCATGCACTCACGTCATGAAGATGTCCTaGCCTCCAAACTTTTTCTTC +
Preference number: 4 (lower is better)
Translates to: TFLKIRYRLGQHQAPCTHVMKMS*PPNFFF
Trigger: GAAGAAAAAGTTTGGAGGTCAGGACATCTTCATGAC...GTGAGTGCATGGAGCCTGATGCTGCCCTAAACGATACCTGATCTTTAGAAAAGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR TCA 90 bp TCAGGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCACGAAGTACTTCTCAATaGTATCAGCCAGGAACATTC +
Preference number: 4 (lower is better)
Translates to: SGCNRVTCKQTMFGIGLPRSTSQ*YQPGTF
Trigger: GAATGTTCCTGGCTGATATCATTGAGAAGTACTTCG...TGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCCTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp GTAGTGGTCAATTGGTTAATTATGTCTCCCTACCCAGAGGTGTATGAAAGACTTGCTTACAGTACTCGATaGACTGGGTGGCATCAGGAT +
Preference number: 4 (lower is better)
Translates to: VVVNWLIMSPYPEVYERLAYSTR*TGWHQD
Trigger: ATCCTGATGCCACCCAGTTCATCGAGTACTGTAAGC...AAGTCTTTCATACACCTCTGGGTAGGGAGACATAATTAACCAATTGACCACTAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp GCTACAATACATAGCACTTTTATCTCTACCCCAGGGTCAGTTCTCCAGGATGAAGTCTCAAACCAATTGTaGTCCACAATGAGGAAGCAG +
Preference number: 4 (lower is better)
Translates to: ATIHSTFISTPGSVLQDEVSNQL*STMRKQ
Trigger: CTGCTTCCTCATTGTGGAGCACAATTGGTTTGAGAC...TTCATCCTGGAGAACTGACCCTGGGGTAGAGATAAAAGTGCTATGTATTGTAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CCA 90 bp GGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTATTAATGAAGGACATGTaGTCCTCGTCGATGATGTAC +
Preference number: 4 (lower is better)
Translates to: GCNRVTCKQTMFGIGLPVLMKDM*SSSMMY
Trigger: GTACATCATCGACGAGGACCACATGTCCTTCATTAA...TACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp ACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGCATCTCCGCAGCTCAAAGACAATCCCTTaGATTTTGTTCAAAGGTCGG +
Preference number: 4 (lower is better)
Translates to: TCKQTMFGIGLPVQHLRSSKTIP*ILFKGR
Trigger: CCGACCTTTGAACAAAATCCAAGGGATTGTCTTTGA...GCTGCGGAGATGCTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp GGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCGATTGTCTTCAGGCCTaGAATTACAGAGATAGTTTT +
Preference number: 4 (lower is better)
Translates to: GTLTISPNTVNSAGLGPVDCLQA*NYRDSF
Trigger: AAAACTATCTCTGTAATTCCAGGCCTGAAGACAATC...GACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR CAA 72 bp CAAGTCCAAAGAATACTTTGCCCTTCCCTGGCGCCTTaGTCTCTGTATCTCAGAACGCTTTACAAAACATCT +
Preference number: 4 (lower is better)
Translates to: QVQRILCPSLAP*SLYLRTLYKTS
Trigger: AGATGTTTTGTAAAGCGTTCTGAGATACAGAGACAAAGGCGCCAGGGAAGGGCAAAGTATTCTTTGGACTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR CAA 72 bp CTCAAACATACCTTCCCTTCTAGATTTCAAGGCCGGTaGGTTCTTAGAAAGGTTATTTCCCCGGATGCAATG +
Preference number: 4 (lower is better)
Translates to: LKHTFPSRFQGR*VLRKVISPDAM
Trigger: CATTGCATCCGGGGAAATAACCTTTCTAAGAACCAACCGGCCTTGAAATCTAGAAGGGAAGGTATGTTTGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201438.4
CDS-3UTR TCA 90 bp AATCATAACCATGAACAAGGCAGAAGTAAGGCCAGACCAGCTAGGTTGGTTGAATTTCTGAAGTCTCGTTaGAGCAGTAGTGGTATTTCC +
Preference number: 4 (lower is better)
Translates to: NHNHEQGRSKARPARLVEFLKSR*SSSGIS
Trigger: GGAAATACCACTACTGCTTCAACGAGACTTCAGAAA...TTCAACCAACCTAGCTGGTCTGGCCTTACTTCTGCCTTGTTCATGGTTATGATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR GCA 90 bp TTTGGTTGGGTTGTTTTTGTTGGTAGTGGTCAATTGGTTAATTATGTCTCCCTACATCGCCTTGAACTCTaGCTCTTTCTGCTCTGCCTC +
Preference number: 4 (lower is better)
Translates to: FGWVVFVGSGQLVNYVSLHRLEL*LFLLCL
Trigger: GAGGCAGAGCAGAAAGAGGCAGAGTTCAAGGCGATG...TAGGGAGACATAATTAACCAATTGACCACTACCAACAAAAACAACCCAACCAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp TTTGGTTGGGTTGTTTTTGTTGGTAGTGGTCAATTGGTTAATTATGTCTCCCTACCGTTGCTTGAAGTGTaGCTGCATGAAGGCATGCAC +
Preference number: 4 (lower is better)
Translates to: FGWVVFVGSGQLVNYVSLPLLEV*LHEGMH
Trigger: GTGCATGCCTTCATGCAGGCACACTTCAAGCAACGG...TAGGGAGACATAATTAACCAATTGACCACTACCAACAAAAACAACCCAACCAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp TTTGGTTGGGTTGTTTTTGTTGGTAGTGGTCAATTGGTTAATTATGTCTCCCTACGTCCAGTTTGTCTTTaGTGCCTTCGGGGTCTGACT +
Preference number: 4 (lower is better)
Translates to: FGWVVFVGSGQLVNYVSLRPVCL*CLRGLT
Trigger: AGTCAGACCCCGAAGGCAGCAAAGACAAACTGGACG...TAGGGAGACATAATTAACCAATTGACCACTACCAACAAAAACAACCCAACCAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp TTTGGTTGGGTTGTTTTTGTTGGTAGTGGTCAATTGGTTAATTATGTCTCCCTACGTGAAGCAGGCGTCTaGATCCAAGTATTCCTCAGG +
Preference number: 4 (lower is better)
Translates to: FGWVVFVGSGQLVNYVSLREAGV*IQVFLR
Trigger: CCTGAGGAATACTTGGATCCAGACGCCTGCTTCACG...TAGGGAGACATAATTAACCAATTGACCACTACCAACAAAAACAACCCAACCAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp TTTGGTTGGGTTGTTTTTGTTGGTAGTGGTCAATTGGTTAATTATGTCTCCCTACCGCATACTCCAGGATaGTACGGATGGTCTTCCTCT +
Preference number: 4 (lower is better)
Translates to: FGWVVFVGSGQLVNYVSLPHTPG*YGWSSS
Trigger: AGAGGAAGACCATCCGTACCATCCTGGAGTATGCGG...TAGGGAGACATAATTAACCAATTGACCACTACCAACAAAAACAACCCAACCAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
3UTR CAA 72 bp AACACAGCATGCCATCATGCAAGTCATTTCTACGCATaGAACGAGCACAATATTTGGAATTGGCCTGAGCAA +
Preference number: 4 (lower is better)
Translates to: NTACHHASHFYA*NEHNIWNWPEQ
Trigger: TTGCTCAGGCCAATTCCAAATATTGTGCTCGTTCAATGCGTAGAAATGACTTGCATGATGGCATGCTGTGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
3UTR CAA 72 bp CTTCCAGTTTCTCCGATTTTTGTTTACGGCTTACCTTaGACTTTAAATCAGCACCTGTATACGCTCTCACCG +
Preference number: 4 (lower is better)
Translates to: LPVSPIFVYGLP*TLNQHLYTLSP
Trigger: CGGTGAGAGCGTATACAGGTGCTGATTTAAAGTCAAAGGTAAGCCGTAAACAAAAATCGGAGAAACTGGAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000201438.4
CDS-3UTR TCA 90 bp TTTGGTTGGGTTGTTTTTGTTGGTAGTGGTCAATTGGTTAATTATGTCTCCCTAAAGCCCTCAGTACCCTaGAAGTGCGTAGAGCTGAAA +
Preference number: 4 (lower is better)
Translates to: FGWVVFVGSGQLVNYVSLKPSVP*KCVELK
Trigger: TTTCAGCTCTACGCACTTTCAGGGTACTGAGGGCTT...TAGGGAGACATAATTAACCAATTGACCACTACCAACAAAAACAACCCAACCAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000082209.13
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp TTTGGTTGGGTTGTTTTTGTTGGTAGTGGTCAATTGGTTAATTATGTCTCCCTACCAGATAGCTCTCGTTaGAGTTTATGGGCCACACGA +
Preference number: 4 (lower is better)
Translates to: FGWVVFVGSGQLVNYVSLPDSSR*SLWATR
Trigger: TCGTGTGGCCCATAAACTTCAACGAGAGCTATCTGG...TAGGGAGACATAATTAACCAATTGACCACTACCAACAAAAACAACCCAACCAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp TTTGGTTGGGTTGTTTTTGTTGGTAGTGGTCAATTGGTTAATTATGTCTCCCTAAGGCCTTCCTTCTCATaGCATCTTCCGACTCTGACT +
Preference number: 4 (lower is better)
Translates to: FGWVVFVGSGQLVNYVSLRPSFS*HLPTLT
Trigger: AGTCAGAGTCGGAAGATGGCATGAGAAGGAAGGCCT...TAGGGAGACATAATTAACCAATTGACCACTACCAACAAAAACAACCCAACCAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp TTTGGTTGGGTTGTTTTTGTTGGTAGTGGTCAATTGGTTAATTATGTCTCCCTAAAGTATTCCTCAGGCTaGTCCACTGGGACTTCTTCC +
Preference number: 4 (lower is better)
Translates to: FGWVVFVGSGQLVNYVSLKYSSG*STGTSS
Trigger: GGAAGAAGTCCCAGTGGAGCAGCCTGAGGAATACTT...TAGGGAGACATAATTAACCAATTGACCACTACCAACAAAAACAACCCAACCAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp GGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTAGATTGTCTTCAGGCCTaGAATTACAGAGATAGTTTT +
Preference number: 4 (lower is better)
Translates to: GCNRVTCKQTMFGIGLPVDCLQA*NYRDSF
Trigger: AAAACTATCTCTGTAATTCCAGGCCTGAAGACAATC...TACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
3UTR CAA 72 bp ATGTGTGTGTGTGTGTGTATGTGTCTGTGTGTGTCTTaGTGTGTCTGTATGTGTGTGTGTTTCTTTTTGCTG +
Preference number: 4 (lower is better)
Translates to: MCVCVCMCLCVS*CVCMCVCFFLL
Trigger: CAGCAAAAAGAAACACACACACATACAGACACACAAAGACACACACAGACACATACACACACACACACACAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp TTTACAGTGACATTAATAGTACAAGCCATTCGGGGCCAGAGTCTCCCCATGTATAGTTTGTTTTATTGTTaGTATACTCCTCCCAGTCGA +
Preference number: 4 (lower is better)
Translates to: FTVTLIVQAIRGQSLPMYSLFYC*YTPPSR
Trigger: TCGACTGGGAGGAGTATATCAACAATAAAACAAACT...ATACATGGGGAGACTCTGGCCCCGAATGGCTTGTACTATTAATGTCACTGTAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR TCA 90 bp GTAGTGGTCAATTGGTTAATTATGTCTCCCTACCCAGAGGTGTATGAAAGACTTATGCTGAGCAGCGACTaGTTCATGATGGAAAATTTC +
Preference number: 4 (lower is better)
Translates to: VVVNWLIMSPYPEVYERLMLSSD*FMMENF
Trigger: GAAATTTTCCATCATGAATCAGTCGCTGCTCAGCAT...AAGTCTTTCATACACCTCTGGGTAGGGAGACATAATTAACCAATTGACCACTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp TTTACAGTGACATTAATAGTACAAGCCATTCGGGGCCAGAGTCTCCCCATGTATAAACTCTGTCACATATaGCATCATGATGACACTGAA +
Preference number: 4 (lower is better)
Translates to: FTVTLIVQAIRGQSLPMYKLCHI*HHDDTE
Trigger: TTCAGTGTCATCATGATGGCATATGTGACAGAGTTT...ATACATGGGGAGACTCTGGCCCCGAATGGCTTGTACTATTAATGTCACTGTAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR GCA 90 bp AATCATAACCATGAACAAGGCAGAAGTAAGGCCAGACCAGCTAGGTTGGTTGAAAAACTCTGTCACATATaGCATCATGATGACACTGAA +
Preference number: 4 (lower is better)
Translates to: NHNHEQGRSKARPARLVEKLCHI*HHDDTE
Trigger: TTCAGTGTCATCATGATGGCATATGTGACAGAGTTT...TTCAACCAACCTAGCTGGTCTGGCCTTACTTCTGCCTTGTTCATGGTTATGATT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CCA 90 bp GTAGTGGTCAATTGGTTAATTATGTCTCCCTACCCAGAGGTGTATGAAAGACTTCAATGCAGATGGTTATaGCTAAGTCTACGAAAGGGT +
Preference number: 4 (lower is better)
Translates to: VVVNWLIMSPYPEVYERLQCRWL*LSLRKG
Trigger: ACCCTTTCGTAGACTTAGCCATAACCATCTGCATTG...AAGTCTTTCATACACCTCTGGGTAGGGAGACATAATTAACCAATTGACCACTAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CCA 90 bp TTTACAGTGACATTAATAGTACAAGCCATTCGGGGCCAGAGTCTCCCCATGTATGATTGTCTTCAGGCCTaGAATTACAGAGATAGTTTT +
Preference number: 4 (lower is better)
Translates to: FTVTLIVQAIRGQSLPMYDCLQA*NYRDSF
Trigger: AAAACTATCTCTGTAATTCCAGGCCTGAAGACAATC...ATACATGGGGAGACTCTGGCCCCGAATGGCTTGTACTATTAATGTCACTGTAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR TCA 90 bp TTTGGTTGGGTTGTTTTTGTTGGTAGTGGTCAATTGGTTAATTATGTCTCCCTACCACTAGTGTGTTTGTaGCAACGCTCATTATACTGT +
Preference number: 4 (lower is better)
Translates to: FGWVVFVGSGQLVNYVSLPLVCL*QRSLYC
Trigger: ACAGTATAATGAGCGTTGTCACAAACACACTAGTGG...TAGGGAGACATAATTAACCAATTGACCACTACCAACAAAAACAACCCAACCAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp TTTGGTTGGGTTGTTTTTGTTGGTAGTGGTCAATTGGTTAATTATGTCTCCCTACGAAGTACTTCTCAATaGTATCAGCCAGGAACATTC +
Preference number: 4 (lower is better)
Translates to: FGWVVFVGSGQLVNYVSLRSTSQ*YQPGTF
Trigger: GAATGTTCCTGGCTGATATCATTGAGAAGTACTTCG...TAGGGAGACATAATTAACCAATTGACCACTACCAACAAAAACAACCCAACCAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR GCA 90 bp GTAGTGGTCAATTGGTTAATTATGTCTCCCTACCCAGAGGTGTATGAAAGACTTAAACTCTGTCACATATaGCATCATGATGACACTGAA +
Preference number: 4 (lower is better)
Translates to: VVVNWLIMSPYPEVYERLKLCHI*HHDDTE
Trigger: TTCAGTGTCATCATGATGGCATATGTGACAGAGTTT...AAGTCTTTCATACACCTCTGGGTAGGGAGACATAATTAACCAATTGACCACTAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CCA 90 bp TTTGGTTGGGTTGTTTTTGTTGGTAGTGGTCAATTGGTTAATTATGTCTCCCTATTAATGAAGGACATGTaGTCCTCGTCGATGATGTAC +
Preference number: 4 (lower is better)
Translates to: FGWVVFVGSGQLVNYVSLLMKDM*SSSMMY
Trigger: GTACATCATCGACGAGGACCACATGTCCTTCATTAA...TAGGGAGACATAATTAACCAATTGACCACTACCAACAAAAACAACCCAACCAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR TCA 90 bp TTTGGTTGGGTTGTTTTTGTTGGTAGTGGTCAATTGGTTAATTATGTCTCCCTAAGTTTGTTTTATTGTTaGTATACTCCTCCCAGTCGA +
Preference number: 4 (lower is better)
Translates to: FGWVVFVGSGQLVNYVSLSLFYC*YTPPSR
Trigger: TCGACTGGGAGGAGTATATCAACAATAAAACAAACT...TAGGGAGACATAATTAACCAATTGACCACTACCAACAAAAACAACCCAACCAAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS TCA 90 bp TGTAGCCGCTGTAGCTGCTGCGGCGCTCGCGGGCGCGGATCGGGATaGAGAGCGAGTCGCGCCGGCCCTCACTTTCCTCCACTGTGCTGT +
Preference number: 5 (lower is better)
Translates to: CSRCSCCGARGRGSG*RASRAGPHFPPLCC
Trigger: ACAGCACAGTGGAGGAAAGTGAGGGCCGGCGCGACTCGCTCTTCATCCCGATCCGCGCCCGCGAGCGCCGCAGCAGCTACAGCGGCTACA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201518.4
ENSMUST00000201549.4
ENSMUST00000202702.2
CDS CCA 90 bp CATTGCAGTCCACGGTGCTGTTGCGTTTCACGCTGCGCCGCAGGCTaGGGAAGATGCGCGACGAGCGGCTGCACTGGCTGTAGCCGCTGT +
Preference number: 5 (lower is better)
Translates to: HCSPRCCCVSRCAAG*GRCATSGCTGCSRC
Trigger: ACAGCGGCTACAGCCAGTGCAGCCGCTCGTCGCGCATCTTCCCCAGCCTGCGGCGCAGCGTGAAACGCAACAGCACCGTGGACTGCAATG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201518.4
ENSMUST00000201549.4
ENSMUST00000202702.2
CDS GCA 90 bp TTAATCTCCACCTCAGTTGTTGCCTCAGGCAGGAGCCGCCCGATGTaGGAGCCAGGCCCGATGAGCGACACCACGCCATTGCAGTCCACG +
Preference number: 5 (lower is better)
Translates to: LISTSVVASGRSRPM*EPGPMSDTTPLQST
Trigger: CGTGGACTGCAATGGCGTGGTGTCGCTCATCGGGCCTGGCTCGCACATCGGGCGGCTCCTGCCTGAGGCAACAACTGAGGTGGAGATTAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201518.4
ENSMUST00000201549.4
CDS TCA 90 bp CTTCATCGTCCTCCCGGTGGCTGCCATCCGCCTTGGGTGGTTTCTTaGGCTTGCTCTCGGCGATGCGCCTCTCGATGTTTGCCAGCGACT +
Preference number: 5 (lower is better)
Translates to: LHRPPGGCHPPWVVS*ACSRRCASRCLPAT
Trigger: AGTCGCTGGCAAACATCGAGAGGCGCATCGCCGAGAGCAAGCTCAAGAAACCACCCAAGGCGGATGGCAGCCACCGGGAGGACGATGAAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000082209.13
ENSMUST00000096198.10
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200959.2
ENSMUST00000200963.4
ENSMUST00000201518.4
ENSMUST00000201549.4
CDS TCA 90 bp CGGAGAGCCTACCCCATCTTCCCCTTCTTCTTCAATGGCATCTTCTaGGACGGTGCCCGCCGAAGTGGCCATTGCAGCAGCCTGCGCCTC +
Preference number: 5 (lower is better)
Translates to: RRAYPIFPFFFNGIF*DGARRSGHCSSLRL
Trigger: GAGGCGCAGGCTGCTGCAATGGCCACTTCGGCGGGCACCGTCTCAGAAGATGCCATTGAAGAAGAAGGGGAAGATGGGGTAGGCTCTCCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201518.4
ENSMUST00000201549.4
ENSMUST00000202702.2
CDS GCA 90 bp GGGTGGTTTCTTGAGCTTGCTCTCGGCGATGCGCCTCTCGATGTTTaGCAGCGACTCGGGGGTGAAAGGCTTGAAACTGTCGGGGCCTGG +
Preference number: 5 (lower is better)
Translates to: GWFLELALGDAPLDV*QRLGGERLETVGAW
Trigger: CCAGGCCCCGACAGTTTCAAGCCTTTCACCCCCGAGTCGCTGGCAAACATCGAGAGGCGCATCGCCGAGAGCAAGCTCAAGAAACCACCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 9 transcripts:
ENSMUST00000082209.13
ENSMUST00000096198.10
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200959.2
ENSMUST00000200963.4
ENSMUST00000201518.4
ENSMUST00000201549.4
CDS CCA 90 bp CCTTGTCGGGCTTTGTCACGCTGTCGTAAGAGGGGAGGGAGGCTGTaGACGGGGTGCTCTCCTTCTTCTCTCGGTGGGTGCCTCCATTCT +
Preference number: 5 (lower is better)
Translates to: PCRALSRCRKRGGRL*TGCSPSSLGGCLHS
Trigger: AGAATGGAGGCACCCACCGAGAGAAGAAGGAGAGCACCCCGTCCACAGCCTCCCTCCCCTCTTACGACAGCGTGACAAAGCCCGACAAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp CTATGTCGCTTCAGGGGCCCTGAGGGGGAGCTTGTCTCTCTGTGCGCAGCTTCATTCCCGCAGTCCCCTTaGAAGCCACTTCCTGGGTGC +
Preference number: 5 (lower is better)
Translates to: LCRFRGPEGELVSLCAASFPQSP*KPLPGC
Trigger: GCACCCAGGAAGTGGCTTCAAAGGGGACTGCGGGAA...TGAAGCTGCGCACAGAGAGACAAGCTCCCCCTCAGGGCCCCTGAAGCGACATAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS GCA 90 bp CTACCCCATCTTCCCCTTCTTCTTCAATGGCATCTTCTGAGACGGTaGCCGCCGAAGTGGCCATTGCAGCAGCCTGCGCCTCCTCCTGCT +
Preference number: 5 (lower is better)
Translates to: LPHLPLLLQWHLLRR*PPKWPLQQPAPPPA
Trigger: AGCAGGAGGAGGCGCAGGCTGCTGCAATGGCCACTTCGGCGGGCACCGTCTCAGAAGATGCCATTGAAGAAGAAGGGGAAGATGGGGTAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201518.4
ENSMUST00000201549.4
ENSMUST00000202702.2
CDS GCA 90 bp ATGGCGATGAGCTCGATGGTGTTGGGCTTGGGTACTCGGAGCGGATaGTCCAGGGCGTCGGCAAAGTCGGCCAGCTTACAGTACTCGATG +
Preference number: 5 (lower is better)
Translates to: MAMSSMVLGLGTRSG*SRASAKSASLQYSM
Trigger: CATCGAGTACTGTAAGCTGGCCGACTTTGCCGACGCCCTGGAGCATCCGCTCCGAGTACCCAAGCCCAACACCATCGAGCTCATCGCCAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201549.4
CDS GCA 90 bp GCTTTGTCACGCTGTCGTAAGAGGGGAGGGAGGCTGTGGACGGGGTaGTCTCCTTCTTCTCTCGGTGGGTGCCTCCATTCTCCAGCTTGT +
Preference number: 5 (lower is better)
Translates to: ALSRCRKRGGRLWTG*SPSSLGGCLHSPAC
Trigger: ACAAGCTGGAGAATGGAGGCACCCACCGAGAGAAGAAGGAGAGCACCCCGTCCACAGCCTCCCTCCCCTCTTACGACAGCGTGACAAAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201549.4
CDS CCA 90 bp CTTGCTGTCTTCATCGTCCTCCCGGTGGCTGCCATCCGCCTTGGGTaGTTTCTTGAGCTTGCTCTCGGCGATGCGCCTCTCGATGTTTGC +
Preference number: 5 (lower is better)
Translates to: LAVFIVLPVAAIRLG*FLELALGDAPLDVC
Trigger: GCAAACATCGAGAGGCGCATCGCCGAGAGCAAGCTCAAGAAACCACCCAAGGCGGATGGCAGCCACCGGGAGGACGATGAAGACAGCAAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000082209.13
ENSMUST00000096198.10
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200959.2
ENSMUST00000200963.4
ENSMUST00000201518.4
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp CTATGTCGCTTCAGGGGCCCTGAGGGGGAGCTTGTCTCTCTGTGCGCAGCTTCAATCCCTTTGGCGCCCTaGATCAGACGCAAGATGCGC +
Preference number: 5 (lower is better)
Translates to: LCRFRGPEGELVSLCAASIPLAP*IRRKMR
Trigger: GCGCATCTTGCGTCTGATCAAGGGCGCCAAAGGGAT...TGAAGCTGCGCACAGAGAGACAAGCTCCCCCTCAGGGCCCCTGAAGCGACATAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS CCA 90 bp CCCGTAGATGAAAGGCAAACTCTTCCCCGCCTCCAGGTCACTGTTTaGCTTGGGCTTGCTGTCTTCATCGTCCTCCCGGTGGCTGCCATC +
Preference number: 5 (lower is better)
Translates to: PVDERQTLPRLQVTV*LGLAVFIVLPVAAI
Trigger: GATGGCAGCCACCGGGAGGACGATGAAGACAGCAAGCCCAAGCCAAACAGTGACCTGGAGGCGGGGAAGAGTTTGCCTTTCATCTACGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000082209.13
ENSMUST00000096198.10
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200959.2
ENSMUST00000200963.4
ENSMUST00000201518.4
ENSMUST00000201549.4
CDS CCA 90 bp CGCAGGATCCACCACGACTTGCCTAGTCCTTCCTCGATGTTGACCTaGCAGCACTTGAACCTCTGGACACAACCCTCCGTGAAGCAGGCG +
Preference number: 5 (lower is better)
Translates to: RRIHHDLPSPSSMLT*QHLNLWTQPSVKQA
Trigger: CGCCTGCTTCACGGAGGGTTGTGTCCAGAGGTTCAAGTGCTGCCAGGTCAACATCGAGGAAGGACTAGGCAAGTCGTGGTGGATCCTGCG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp CTATGTCGCTTCAGGGGCCCTGAGGGGGAGCTTGTCTCTCTGTGCGCAGCTTCAGGCCACACGACACACTaGTTTCGAAGGTTCCCCATG +
Preference number: 5 (lower is better)
Translates to: LCRFRGPEGELVSLCAASGHTTH*FRRFPM
Trigger: CATGGGGAACCTTCGAAACAAGTGTGTCGTGTGGCC...TGAAGCTGCGCACAGAGAGACAAGCTCCCCCTCAGGGCCCCTGAAGCGACATAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CAA 90 bp AATGGAAGAGCCTACAGCCTTATCTCAGCCAACACTGCTGTCCTTGCCAGCCCTCAGTCCACGGTGCTGTaGCGTTTCACGCTGCGCCGC +
Preference number: 5 (lower is better)
Translates to: NGRAYSLISANTAVLASPQSTVL*RFTLRR
Trigger: GCGGCGCAGCGTGAAACGCAACAGCACCGTGGACTG...AGGGCTGGCAAGGACAGCAGTGTTGGCTGAGATAAGGCTGTAGGCTCTTCCATT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CAA 90 bp CTCCCTACCCAGAGGTGTATGAAAGACTTGTACACTGAGAGGATTGCAGCCGGTAGCACCAGGGTCAGGTaGCCCAGGGCGCCAACGGAG +
Preference number: 5 (lower is better)
Translates to: LPTQRCMKDLYTERIAAGSTRVR*PRAPTE
Trigger: CTCCGTTGGCGCCCTGGGCAACCTGACCCTGGTGCT...ACCGGCTGCAATCCTCTCAGTGTACAAGTCTTTCATACACCTCTGGGTAGGGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS CCA 90 bp ATGAGCTCCTCGGAGAGCCTACCCCATCTTCCCCTTCTTCTTCAATaGCATCTTCTGAGACGGTGCCCGCCGAAGTGGCCATTGCAGCAG +
Preference number: 5 (lower is better)
Translates to: MSSSESLPHLPLLLQ*HLLRRCPPKWPLQQ
Trigger: CTGCTGCAATGGCCACTTCGGCGGGCACCGTCTCAGAAGATGCCATTGAAGAAGAAGGGGAAGATGGGGTAGGCTCTCCGAGGAGCTCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201518.4
ENSMUST00000201549.4
ENSMUST00000202702.2
CDS-3UTR CAA 90 bp GCCATTTCCGCATTAACAGAACAGGGAACGAGTGGAGGGGTAAGGAAGGAGATACCGCCGAAGTGGCCATaGCAGCAGCCTGCGCCTCCT +
Preference number: 5 (lower is better)
Translates to: AISALTEQGTSGGVRKEIPPKWP*QQPAPP
Trigger: AGGAGGCGCAGGCTGCTGCAATGGCCACTTCGGCGG...TATCTCCTTCCTTACCCCTCCACTCGTTCCCTGTTCTGTTAATGCGGAAATGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CAA 90 bp GGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCAGCACCAGGGTCAGGTaGCCCAGGGCGCCAACGGAG +
Preference number: 5 (lower is better)
Translates to: GTLTISPNTVNSAGLGPVSTRVR*PRAPTE
Trigger: CTCCGTTGGCGCCCTGGGCAACCTGACCCTGGTGCT...GACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp CCGGTATGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGAGCACCAGGGTCAGGTaGCCCAGGGCGCCAACGGAG +
Preference number: 5 (lower is better)
Translates to: PVWNSYHFSKYSEQCRAGSTRVR*PRAPTE
Trigger: CTCCGTTGGCGCCCTGGGCAACCTGACCCTGGTGCT...CCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCATACCGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp CTATGTCGCTTCAGGGGCCCTGAGGGGGAGCTTGTCTCTCTGTGCGCAGCTTCAAGTCCTTCCTCGATGTaGACCTGGCAGCACTTGAAC +
Preference number: 5 (lower is better)
Translates to: LCRFRGPEGELVSLCAASSPSSM*TWQHLN
Trigger: GTTCAAGTGCTGCCAGGTCAACATCGAGGAAGGACT...TGAAGCTGCGCACAGAGAGACAAGCTCCCCCTCAGGGCCCCTGAAGCGACATAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CAA 90 bp CTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCCGAAGGAGCAGGAGGCCGATGTaGAACAGGGCGGGCAGCGAC +
Preference number: 5 (lower is better)
Translates to: LTISPNTVNSAGLGPVRRSRRPM*NRAGSD
Trigger: GTCGCTGCCCGCCCTGTTCAACATCGGCCTCCTGCT...CCTTCGGACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS GCA 90 bp ACTTCATCAGCCTCCCGTTGCTTGAAGTGTGCCTGCATGAAGGCATaGACCTTCACTTTGGCCCAGGCCACGCCCTTCTTGATCCGGATC +
Preference number: 5 (lower is better)
Translates to: TSSASRCLKCACMKA*TFTLAQATPFLIRI
Trigger: GATCCGGATCAAGAAGGGCGTGGCCTGGGCCAAAGTGAAGGTGCATGCCTTCATGCAGGCACACTTCAAGCAACGGGAGGCTGATGAAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201549.4
CDS CCA 90 bp ATGGGCACCCGCACGGTCAGGTTTGGGTTGTTAATGAAGGACATGTaGTCCTCGTCGATGATGTACTTCTCCACGCTGCTGCCGATGCCG +
Preference number: 5 (lower is better)
Translates to: MGTRTVRFGLLMKDM*SSSMMYFSTLLPMP
Trigger: CGGCATCGGCAGCAGCGTGGAGAAGTACATCATCGACGAGGACCACATGTCCTTCATTAACAACCCAAACCTGACCGTGCGGGTGCCCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp CACTGCTTTTTCCACTCTGCCATTCTGGCAGGCAGTCGTGGGTTGGAAGAGAAGGGTGGTTTCTTGAGCTaGCTCTCGGCGATGCGCCTC +
Preference number: 5 (lower is better)
Translates to: HCFFHSAILAGSRGLEEKGGFLS*LSAMRL
Trigger: GAGGCGCATCGCCGAGAGCAAGCTCAAGAAACCACC...CTTCTCTTCCAACCCACGACTGCCTGCCAGAATGGCAGAGTGGAAAAAGCAGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000096198.10
ENSMUST00000200959.2
CDS-3UTR CAA 90 bp CACTGCTTTTTCCACTCTGCCATTCTGGCAGGCAGTCGTGGGTTGGAAGAGAAGAACCGCAACCAGGCCTaGCGGGATGTCCCCGTAGAT +
Preference number: 5 (lower is better)
Translates to: HCFFHSAILAGSRGLEEKNRNQA*RDVPVD
Trigger: ATCTACGGGGACATCCCGCAAGGCCTGGTTGCGGTT...CTTCTCTTCCAACCCACGACTGCCTGCCAGAATGGCAGAGTGGAAAAAGCAGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000096198.10
ENSMUST00000200959.2
CDS-3UTR CAA 90 bp CCTCTTCCTCAAGTCCAAAGAATACTTTGCCCTTCCCTGGCGCCTTTGTCTCTGTCTCCACCTCAGTTGTaGCCTCAGGCAGGAGCCGCC +
Preference number: 5 (lower is better)
Translates to: PLPQVQRILCPSLAPLSLSPPQL*PQAGAA
Trigger: GGCGGCTCCTGCCTGAGGCAACAACTGAGGTGGAGA...CAGAGACAAAGGCGCCAGGGAAGGGCAAAGTATTCTTTGGACTTGAGGAAGAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000082209.13
ENSMUST00000108910.10
CDS-3UTR CAA 90 bp TGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTAGCACCAGGGTCAGGTaGCCCAGGGCGCCAACGGAG +
Preference number: 5 (lower is better)
Translates to: WNSYHFSKYSEQCRAGSCSTRVR*PRAPTE
Trigger: CTCCGTTGGCGCCCTGGGCAACCTGACCCTGGTGCT...ACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp GGAAGAAGGGAGTGTTTTCACACAACCAGTAGTCATGGCGACTACTGCTCAGGGGCATGCACCTTCACTTaGGCCCAGGCCACGCCCTTC +
Preference number: 5 (lower is better)
Translates to: GRRECFHTTSSHGDYCSGACTFT*AQATPF
Trigger: GAAGGGCGTGGCCTGGGCCAAAGTGAAGGTGCATGC...CCCTGAGCAGTAGTCGCCATGACTACTGGTTGTGTGAAAACACTCCCTTCTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CAA 90 bp CCTCTTCCTCAAGTCCAAAGAATACTTTGCCCTTCCCTGGCGCCTTTGTCTCTGGACACCTCTTCCTGCTaGCGCCGCAGAGTGGTCGTG +
Preference number: 5 (lower is better)
Translates to: PLPQVQRILCPSLAPLSLDTSSC*RRRVVV
Trigger: CACGACCACTCTGCGGCGCAAGCAGGAAGAGGTGTC...CAGAGACAAAGGCGCCAGGGAAGGGCAAAGTATTCTTTGGACTTGAGGAAGAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS TCA 90 bp CCGCTAGTGGTGCCATTTCCATTTTTCTGGAAGTCGCCGTTCCTGTaGATGTCCACGCCGGTGTGGTTGGCGATGCAGTTGGCCTTCTTC +
Preference number: 5 (lower is better)
Translates to: PLVVPFPFFWKSPFL*MSTPVWLAMQLAFF
Trigger: GAAGAAGGCCAACTGCATCGCCAACCACACCGGCGTGGACATTCACAGGAACGGCGACTTCCAGAAAAATGGAAATGGCACCACTAGCGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201549.4
CDS GCA 90 bp CAACCCTCCGTGAAGCAGGCGTCTGGATCCAAGTATTCCTCAGGCTaGTCCACTGGGACTTCTTCCACCTCAGGCTTGATGTCGATGGTA +
Preference number: 5 (lower is better)
Translates to: QPSVKQASGSKYSSG*STGTSSTSGLMSMV
Trigger: TACCATCGACATCAAGCCTGAGGTGGAAGAAGTCCCAGTGGAGCAGCCTGAGGAATACTTGGATCCAGACGCCTGCTTCACGGAGGGTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201549.4
CDS CCA 90 bp CGTGAAGCAGGCGTCTGGATCCAAGTATTCCTCAGGCTGCTCCACTaGGACTTCTTCCACCTCAGGCTTGATGTCGATGGTACTCCCTTC +
Preference number: 5 (lower is better)
Translates to: REAGVWIQVFLRLLH*DFFHLRLDVDGTPF
Trigger: GAAGGGAGTACCATCGACATCAAGCCTGAGGTGGAAGAAGTCCCAGTGGAGCAGCCTGAGGAATACTTGGATCCAGACGCCTGCTTCACG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp AACTCTCAGTTCCTTCTCCAGCATCATGTCTGCCTGGATGCTCCCATGCTTCTGTCGGGGGTGAAAGGCTaGAAACTGTCGGGGCCTGGT +
Preference number: 5 (lower is better)
Translates to: NSQFLLQHHVCLDAPMLLSGVKG*KLSGPG
Trigger: ACCAGGCCCCGACAGTTTCAAGCCTTTCACCCCCGA...CAGAAGCATGGGAGCATCCAGGCAGACATGATGCTGGAGAAGGAACTGAGAGTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000096198.10
CDS-3UTR CAA 90 bp CACTGCTTTTTCCACTCTGCCATTCTGGCAGGCAGTCGTGGGTTGGAAGAGAAGTGGCTGCCATCCGCCTaGGGTGGTTTCTTGAGCTTG +
Preference number: 5 (lower is better)
Translates to: HCFFHSAILAGSRGLEEKWLPSA*GGFLSL
Trigger: CAAGCTCAAGAAACCACCCAAGGCGGATGGCAGCCA...CTTCTCTTCCAACCCACGACTGCCTGCCAGAATGGCAGAGTGGAAAAAGCAGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000096198.10
ENSMUST00000200959.2
CDS-3UTR CAA 90 bp GCAGCATTGACAGTGAGTCCAGGGGTCGGGGGTCAGATGGCCACATGGTTCTTAAGGTCACTGTTTGGCTaGGGCTTGCTGTCTTCATCG +
Preference number: 5 (lower is better)
Translates to: AALTVSPGVGGQMATWFLRSLFG*GLLSSS
Trigger: CGATGAAGACAGCAAGCCCAAGCCAAACAGTGACCT...TAAGAACCATGTGGCCATCTGACCCCCGACCCCTGGACTCACTGTCAATGCTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000096198.10
ENSMUST00000200959.2
CDS-3UTR CAA 90 bp CTCCCTACCCAGAGGTGTATGAAAGACTTGTACACTGAGAGGATTGCAGCCGGTAACCGCAACCAGGCCTaGCGGGATGTCCCCGTAGAT +
Preference number: 5 (lower is better)
Translates to: LPTQRCMKDLYTERIAAGNRNQA*RDVPVD
Trigger: ATCTACGGGGACATCCCGCAAGGCCTGGTTGCGGTT...ACCGGCTGCAATCCTCTCAGTGTACAAGTCTTTCATACACCTCTGGGTAGGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp CTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCCGAAGGAACCGCAACCAGGCCTaGCGGGATGTCCCCGTAGAT +
Preference number: 5 (lower is better)
Translates to: LTISPNTVNSAGLGPVRRNRNQA*RDVPVD
Trigger: ATCTACGGGGACATCCCGCAAGGCCTGGTTGCGGTT...CCTTCGGACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp CTCCCTACCCAGAGGTGTATGAAAGACTTGTACACTGAGAGGATTGCAGCCGGTTCCTCCTGCTGCTTCTaGAGCTGCTCCAGCATCGCC +
Preference number: 5 (lower is better)
Translates to: LPTQRCMKDLYTERIAAGSSCCF*SCSSIA
Trigger: GGCGATGCTGGAGCAGCTCAAGAAGCAGCAGGAGGA...ACCGGCTGCAATCCTCTCAGTGTACAAGTCTTTCATACACCTCTGGGTAGGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp GGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACCGCCGAAGTGGCCATaGCAGCAGCCTGCGCCTCCT +
Preference number: 5 (lower is better)
Translates to: GCNRVTCKQTMFGIGLPVPPKWP*QQPAPP
Trigger: AGGAGGCGCAGGCTGCTGCAATGGCCACTTCGGCGG...TACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp TGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGCCGCCGAAGTGGCCATaGCAGCAGCCTGCGCCTCCT +
Preference number: 5 (lower is better)
Translates to: CNRVTCKQTMFGIGLPVQPPKWP*QQPAPP
Trigger: AGGAGGCGCAGGCTGCTGCAATGGCCACTTCGGCGG...CTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp CTCACTGACTGGCTGTGGTTTGTTCTATGCAAAACTAGTCAGGTGGACTGTGAGCAGTCCACGGTGCTGTaGCGTTTCACGCTGCGCCGC +
Preference number: 5 (lower is better)
Translates to: LTDWLWFVLCKTSQVDCEQSTVL*RFTLRR
Trigger: GCGGCGCAGCGTGAAACGCAACAGCACCGTGGACTG...CTCACAGTCCACCTGACTAGTTTTGCATAGAACAAACCACAGCCAGTCAGTGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CAA 90 bp TGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCAGTCCACGGTGCTGTaGCGTTTCACGCTGCGCCGC +
Preference number: 5 (lower is better)
Translates to: WNSYHFSKYSEQCRAGSCQSTVL*RFTLRR
Trigger: GCGGCGCAGCGTGAAACGCAACAGCACCGTGGACTG...ACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp GGAAGAAGGGAGTGTTTTCACACAACCAGTAGTCATGGCGACTACTGCTCAGGGAGCGACACCACGCCATaGCAGTCCACGGTGCTGTTG +
Preference number: 5 (lower is better)
Translates to: GRRECFHTTSSHGDYCSGSDTTP*QSTVLL
Trigger: CAACAGCACCGTGGACTGCAATGGCGTGGTGTCGCT...CCCTGAGCAGTAGTCGCCATGACTACTGGTTGTGTGAAAACACTCCCTTCTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CAA 90 bp GGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCGCATGCACCTTCACTTaGGCCCAGGCCACGCCCTTC +
Preference number: 5 (lower is better)
Translates to: GTLTISPNTVNSAGLGPVACTFT*AQATPF
Trigger: GAAGGGCGTGGCCTGGGCCAAAGTGAAGGTGCATGC...GACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp CTATGTCGCTTCAGGGGCCCTGAGGGGGAGCTTGTCTCTCTGTGCGCAGCTTCACCGACGTTGTCGAAGTaGATCTTGACGTTCTTCCAT +
Preference number: 5 (lower is better)
Translates to: LCRFRGPEGELVSLCAASPTLSK*ILTFFH
Trigger: ATGGAAGAACGTCAAGATCAACTTCGACAACGTCGG...TGAAGCTGCGCACAGAGAGACAAGCTCCCCCTCAGGGCCCCTGAAGCGACATAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CAA 90 bp ACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGCATCTCCGCAGCAGCAGGAGGCCGATGTaGAACAGGGCGGGCAGCGAC +
Preference number: 5 (lower is better)
Translates to: TCKQTMFGIGLPVQHLRSSRRPM*NRAGSD
Trigger: GTCGCTGCCCGCCCTGTTCAACATCGGCCTCCTGCT...GCTGCGGAGATGCTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp CTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCCGAAGGTTCCCGCAGTCCCCTTaGAAGCCACTTCCTGGGTGC +
Preference number: 5 (lower is better)
Translates to: LTISPNTVNSAGLGPVRRFPQSP*KPLPGC
Trigger: GCACCCAGGAAGTGGCTTCAAAGGGGACTGCGGGAA...CCTTCGGACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp CTCCCTACCCAGAGGTGTATGAAAGACTTGTACACTGAGAGGATTGCAGCCGGTTCGATGGTGTTGGGCTaGGGTACTCGGAGCGGATGC +
Preference number: 5 (lower is better)
Translates to: LPTQRCMKDLYTERIAAGSMVLG*GTRSGC
Trigger: GCATCCGCTCCGAGTACCCAAGCCCAACACCATCGA...ACCGGCTGCAATCCTCTCAGTGTACAAGTCTTTCATACACCTCTGGGTAGGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp CCGGTATGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGGACACCTCTTCCTGCTaGCGCCGCAGAGTGGTCGTG +
Preference number: 5 (lower is better)
Translates to: PVWNSYHFSKYSEQCRAGDTSSC*RRRVVV
Trigger: CACGACCACTCTGCGGCGCAAGCAGGAAGAGGTGTC...CCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCATACCGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp CTATGTCGCTTCAGGGGCCCTGAGGGGGAGCTTGTCTCTCTGTGCGCAGCTTCACCTCCATTCTCCAGCTaGTTGGAAGTGATCTTTCTG +
Preference number: 5 (lower is better)
Translates to: LCRFRGPEGELVSLCAASPPFSS*LEVIFL
Trigger: CAGAAAGATCACTTCCAACAAGCTGGAGAATGGAGG...TGAAGCTGCGCACAGAGAGACAAGCTCCCCCTCAGGGCCCCTGAAGCGACATAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS TCA 90 bp CCTCCCAGTCGAAGCCTCTGGTGCCGTTCTCCAGATAGCTCTCGTTaGAGTTTATGGGCCACACGACACACTTGTTTCGAAGGTTCCCCA +
Preference number: 5 (lower is better)
Translates to: PPSRSLWCRSPDSSR*SLWATRHTCFEGSP
Trigger: TGGGGAACCTTCGAAACAAGTGTGTCGTGTGGCCCATAAACTTCAACGAGAGCTATCTGGAGAACGGCACCAGAGGCTTCGACTGGGAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201518.4
ENSMUST00000201549.4
ENSMUST00000202702.2
CDS TCA 90 bp CCGACGCTCCTTCGCGCTCTTGGAACTGAGTTTAGACAGCTCAGATaGGCTCCTCGGAGAGCCTACCCCATCTTCCCCTTCTTCTTCAAT +
Preference number: 5 (lower is better)
Translates to: PTLLRALGTEFRQLR*APRRAYPIFPFFFN
Trigger: ATTGAAGAAGAAGGGGAAGATGGGGTAGGCTCTCCGAGGAGCTCATCTGAGCTGTCTAAACTCAGTTCCAAGAGCGCGAAGGAGCGTCGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201518.4
ENSMUST00000201549.4
ENSMUST00000202702.2
CDS GCA 90 bp TCTAAAGGTTTCACTTCATCAGCCTCCCGTTGCTTGAAGTGTGCCTaGATGAAGGCATGCACCTTCACTTTGGCCCAGGCCACGCCCTTC +
Preference number: 5 (lower is better)
Translates to: SKGFTSSASRCLKCA*MKACTFTLAQATPF
Trigger: GAAGGGCGTGGCCTGGGCCAAAGTGAAGGTGCATGCCTTCATGCAGGCACACTTCAAGCAACGGGAGGCTGATGAAGTGAAACCTTTAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp ACACTGCTTTTTCCACTCTGCCATTCTGGCAGGCAGTCGTGGGTTGGAAGAGAATGGCTGCCATCCGCCTaGGGTGGTTTCTTGAGCTTG +
Preference number: 5 (lower is better)
Translates to: TLLFPLCHSGRQSWVGREWLPSA*GGFLSL
Trigger: CAAGCTCAAGAAACCACCCAAGGCGGATGGCAGCCA...TTCTCTTCCAACCCACGACTGCCTGCCAGAATGGCAGAGTGGAAAAAGCAGTGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000096198.10
ENSMUST00000200959.2
CDS-3UTR CAA 90 bp CTCCCTACCCAGAGGTGTATGAAAGACTTGTACACTGAGAGGATTGCAGCCGGTTGGCTGCCATCCGCCTaGGGTGGTTTCTTGAGCTTG +
Preference number: 5 (lower is better)
Translates to: LPTQRCMKDLYTERIAAGWLPSA*GGFLSL
Trigger: CAAGCTCAAGAAACCACCCAAGGCGGATGGCAGCCA...ACCGGCTGCAATCCTCTCAGTGTACAAGTCTTTCATACACCTCTGGGTAGGGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp CCGGTATGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTCCTGCTGCTTCTaGAGCTGCTCCAGCATCGCC +
Preference number: 5 (lower is better)
Translates to: PVWNSYHFSKYSEQCRAGSSCCF*SCSSIA
Trigger: GGCGATGCTGGAGCAGCTCAAGAAGCAGCAGGAGGA...CCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCATACCGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp GCTACAATACATAGCACTTTTATCTCTACCCCAGGGTCAGTTCTCCAGGATGAACCGCCGAAGTGGCCATaGCAGCAGCCTGCGCCTCCT +
Preference number: 5 (lower is better)
Translates to: ATIHSTFISTPGSVLQDEPPKWP*QQPAPP
Trigger: AGGAGGCGCAGGCTGCTGCAATGGCCACTTCGGCGG...TTCATCCTGGAGAACTGACCCTGGGGTAGAGATAAAAGTGCTATGTATTGTAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CAA 90 bp CTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCCGAAGGTTCCTCCCTATCCTATaGTCTGGCAGCCGGAAGGCC +
Preference number: 5 (lower is better)
Translates to: LTISPNTVNSAGLGPVRRFLPIL*SGSRKA
Trigger: GGCCTTCCGGCTGCCAGACAATAGGATAGGGAGGAA...CCTTCGGACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp CTCCCTACCCAGAGGTGTATGAAAGACTTGTACACTGAGAGGATTGCAGCCGGTTTCCTCCCTATCCTATaGTCTGGCAGCCGGAAGGCC +
Preference number: 5 (lower is better)
Translates to: LPTQRCMKDLYTERIAAGFLPIL*SGSRKA
Trigger: GGCCTTCCGGCTGCCAGACAATAGGATAGGGAGGAA...ACCGGCTGCAATCCTCTCAGTGTACAAGTCTTTCATACACCTCTGGGTAGGGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp TGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGCAGTCCACGGTGCTGTaGCGTTTCACGCTGCGCCGC +
Preference number: 5 (lower is better)
Translates to: CNRVTCKQTMFGIGLPVQQSTVL*RFTLRR
Trigger: GCGGCGCAGCGTGAAACGCAACAGCACCGTGGACTG...CTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp CCGGTATGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGAGCGACACCACGCCATaGCAGTCCACGGTGCTGTTG +
Preference number: 5 (lower is better)
Translates to: PVWNSYHFSKYSEQCRAGSDTTP*QSTVLL
Trigger: CAACAGCACCGTGGACTGCAATGGCGTGGTGTCGCT...CCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCATACCGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp ACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGCATCTCCGCAGCTCTCCACCTCAGTTGTaGCCTCAGGCAGGAGCCGCC +
Preference number: 5 (lower is better)
Translates to: TCKQTMFGIGLPVQHLRSSPPQL*PQAGAA
Trigger: GGCGGCTCCTGCCTGAGGCAACAACTGAGGTGGAGA...GCTGCGGAGATGCTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp GCTACAATACATAGCACTTTTATCTCTACCCCAGGGTCAGTTCTCCAGGATGAAAGCACCAGGGTCAGGTaGCCCAGGGCGCCAACGGAG +
Preference number: 5 (lower is better)
Translates to: ATIHSTFISTPGSVLQDESTRVR*PRAPTE
Trigger: CTCCGTTGGCGCCCTGGGCAACCTGACCCTGGTGCT...TTCATCCTGGAGAACTGACCCTGGGGTAGAGATAAAAGTGCTATGTATTGTAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CAA 90 bp ACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGCATCTCCGCAGCTCCACGCCGGTGTGGTaGGCGATGCAGTTGGCCTTC +
Preference number: 5 (lower is better)
Translates to: TCKQTMFGIGLPVQHLRSSTPVW*AMQLAF
Trigger: GAAGGCCAACTGCATCGCCAACCACACCGGCGTGGA...GCTGCGGAGATGCTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp CTCCCTACCCAGAGGTGTATGAAAGACTTGTACACTGAGAGGATTGCAGCCGGTATCCCTTTGGCGCCCTaGATCAGACGCAAGATGCGC +
Preference number: 5 (lower is better)
Translates to: LPTQRCMKDLYTERIAAGIPLAP*IRRKMR
Trigger: GCGCATCTTGCGTCTGATCAAGGGCGCCAAAGGGAT...ACCGGCTGCAATCCTCTCAGTGTACAAGTCTTTCATACACCTCTGGGTAGGGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp TCAGGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAAGCAGGAGGCCGATGTaGAACAGGGCGGGCAGCGAC +
Preference number: 5 (lower is better)
Translates to: SGCNRVTCKQTMFGIGLPSRRPM*NRAGSD
Trigger: GTCGCTGCCCGCCCTGTTCAACATCGGCCTCCTGCT...TGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCCTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp CCGGTATGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCGATGGTGTTGGGCTaGGGTACTCGGAGCGGATGC +
Preference number: 5 (lower is better)
Translates to: PVWNSYHFSKYSEQCRAGSMVLG*GTRSGC
Trigger: GCATCCGCTCCGAGTACCCAAGCCCAACACCATCGA...CCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCATACCGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp GCCATTTCCGCATTAACAGAACAGGGAACGAGTGGAGGGGTAAGGAAGGAGATATCGATGGTGTTGGGCTaGGGTACTCGGAGCGGATGC +
Preference number: 5 (lower is better)
Translates to: AISALTEQGTSGGVRKEISMVLG*GTRSGC
Trigger: GCATCCGCTCCGAGTACCCAAGCCCAACACCATCGA...TATCTCCTTCCTTACCCCTCCACTCGTTCCCTGTTCTGTTAATGCGGAAATGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CAA 90 bp ACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGCATCTCCGCAGCGACACCTCTTCCTGCTaGCGCCGCAGAGTGGTCGTG +
Preference number: 5 (lower is better)
Translates to: TCKQTMFGIGLPVQHLRSDTSSC*RRRVVV
Trigger: CACGACCACTCTGCGGCGCAAGCAGGAAGAGGTGTC...GCTGCGGAGATGCTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS TCA 90 bp AGTATTCCTCAGGCTGCTCCACTGGGACTTCTTCCACCTCAGGCTTaGTGTCGATGGTACTCCCTTCTGAGGAGCTGGTATCGTCCAGTT +
Preference number: 5 (lower is better)
Translates to: SIPQAAPLGLLPPQA*CRWYSLLRSWYRPV
Trigger: AACTGGACGATACCAGCTCCTCAGAAGGGAGTACCATCGACATCAAGCCTGAGGTGGAAGAAGTCCCAGTGGAGCAGCCTGAGGAATACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201549.4
CDS GCA 90 bp GGAAGTCGCCGTTCCTGTGAATGTCCACGCCGGTGTGGTTGGCGATaGAGTTGGCCTTCTTCTCATACAGCTCGTCTAAAGGTTTCACTT +
Preference number: 5 (lower is better)
Translates to: GSRRSCECPRRCGWR*SWPSSHTARLKVSL
Trigger: AAGTGAAACCTTTAGACGAGCTGTATGAGAAGAAGGCCAACTGCATCGCCAACCACACCGGCGTGGACATTCACAGGAACGGCGACTTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp TGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTGGTGGTTTCTTGAGCTaGCTCTCGGCGATGCGCCTC +
Preference number: 5 (lower is better)
Translates to: WNSYHFSKYSEQCRAGSCGGFLS*LSAMRL
Trigger: GAGGCGCATCGCCGAGAGCAAGCTCAAGAAACCACC...ACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp GACACTGCTTTTTCCACTCTGCCATTCTGGCAGGCAGTCGTGGGTTGGAAGAGAAGGTCACTGTTTGGCTaGGGCTTGCTGTCTTCATCG +
Preference number: 5 (lower is better)
Translates to: DTAFSTLPFWQAVVGWKRRSLFG*GLLSSS
Trigger: CGATGAAGACAGCAAGCCCAAGCCAAACAGTGACCT...TCTCTTCCAACCCACGACTGCCTGCCAGAATGGCAGAGTGGAAAAAGCAGTGTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000096198.10
ENSMUST00000200959.2
CDS-3UTR CAA 90 bp CCTCTTCCTCAAGTCCAAAGAATACTTTGCCCTTCCCTGGCGCCTTTGTCTCTGCCTCCAGGTCACTGTTaGGCTTGGGCTTGCTGTCTT +
Preference number: 5 (lower is better)
Translates to: PLPQVQRILCPSLAPLSLPPGHC*AWACCL
Trigger: AAGACAGCAAGCCCAAGCCAAACAGTGACCTGGAGG...CAGAGACAAAGGCGCCAGGGAAGGGCAAAGTATTCTTTGGACTTGAGGAAGAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CAA 90 bp AACTCTCAGTTCCTTCTCCAGCATCATGTCTGCCTGGATGCTCCCATGCTTCTGCCTCCAGGTCACTGTTaGGCTTGGGCTTGCTGTCTT +
Preference number: 5 (lower is better)
Translates to: NSQFLLQHHVCLDAPMLLPPGHC*AWACCL
Trigger: AAGACAGCAAGCCCAAGCCAAACAGTGACCTGGAGG...CAGAAGCATGGGAGCATCCAGGCAGACATGATGCTGGAGAAGGAACTGAGAGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096198.10
CDS-3UTR CAA 90 bp GGAAGAAGGGAGTGTTTTCACACAACCAGTAGTCATGGCGACTACTGCTCAGGGCCTCCAGGTCACTGTTaGGCTTGGGCTTGCTGTCTT +
Preference number: 5 (lower is better)
Translates to: GRRECFHTTSSHGDYCSGPPGHC*AWACCL
Trigger: AAGACAGCAAGCCCAAGCCAAACAGTGACCTGGAGG...CCCTGAGCAGTAGTCGCCATGACTACTGGTTGTGTGAAAACACTCCCTTCTTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CAA 90 bp ACACTGCTTTTTCCACTCTGCCATTCTGGCAGGCAGTCGTGGGTTGGAAGAGAACCTCCAGGTCACTGTTaGGCTTGGGCTTGCTGTCTT +
Preference number: 5 (lower is better)
Translates to: TLLFPLCHSGRQSWVGREPPGHC*AWACCL
Trigger: AAGACAGCAAGCCCAAGCCAAACAGTGACCTGGAGG...TTCTCTTCCAACCCACGACTGCCTGCCAGAATGGCAGAGTGGAAAAAGCAGTGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000096198.10
ENSMUST00000200959.2
CDS-3UTR CAA 90 bp TGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTAACCGCAACCAGGCCTaGCGGGATGTCCCCGTAGAT +
Preference number: 5 (lower is better)
Translates to: WNSYHFSKYSEQCRAGSCNRNQA*RDVPVD
Trigger: ATCTACGGGGACATCCCGCAAGGCCTGGTTGCGGTT...ACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp CTCCCTACCCAGAGGTGTATGAAAGACTTGTACACTGAGAGGATTGCAGCCGGTGGCCACACGACACACTaGTTTCGAAGGTTCCCCATG +
Preference number: 5 (lower is better)
Translates to: LPTQRCMKDLYTERIAAGGHTTH*FRRFPM
Trigger: CATGGGGAACCTTCGAAACAAGTGTGTCGTGTGGCC...ACCGGCTGCAATCCTCTCAGTGTACAAGTCTTTCATACACCTCTGGGTAGGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp ACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGCATCTCCGCAGCTCCTCCTGCTGCTTCTaGAGCTGCTCCAGCATCGCC +
Preference number: 5 (lower is better)
Translates to: TCKQTMFGIGLPVQHLRSSSCCF*SCSSIA
Trigger: GGCGATGCTGGAGCAGCTCAAGAAGCAGCAGGAGGA...GCTGCGGAGATGCTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp CCGGTATGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTTCCTCCCTATCCTATaGTCTGGCAGCCGGAAGGCC +
Preference number: 5 (lower is better)
Translates to: PVWNSYHFSKYSEQCRAGFLPIL*SGSRKA
Trigger: GGCCTTCCGGCTGCCAGACAATAGGATAGGGAGGAA...CCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCATACCGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp AATCATAACCATGAACAAGGCAGAAGTAAGGCCAGACCAGCTAGGTTGGTTGAACAGTCCACGGTGCTGTaGCGTTTCACGCTGCGCCGC +
Preference number: 5 (lower is better)
Translates to: NHNHEQGRSKARPARLVEQSTVL*RFTLRR
Trigger: GCGGCGCAGCGTGAAACGCAACAGCACCGTGGACTG...TTCAACCAACCTAGCTGGTCTGGCCTTACTTCTGCCTTGTTCATGGTTATGATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CAA 90 bp ACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGCATCTCCGCAGCAGCGACACCACGCCATaGCAGTCCACGGTGCTGTTG +
Preference number: 5 (lower is better)
Translates to: TCKQTMFGIGLPVQHLRSSDTTP*QSTVLL
Trigger: CAACAGCACCGTGGACTGCAATGGCGTGGTGTCGCT...GCTGCGGAGATGCTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp TGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGTCTCCACCTCAGTTGTaGCCTCAGGCAGGAGCCGCC +
Preference number: 5 (lower is better)
Translates to: CNRVTCKQTMFGIGLPVQSPPQL*PQAGAA
Trigger: GGCGGCTCCTGCCTGAGGCAACAACTGAGGTGGAGA...CTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp AATGGAAGAGCCTACAGCCTTATCTCAGCCAACACTGCTGTCCTTGCCAGCCCTACCGATATCTGCAGGTaGTTCATTTCCCCGTCGTCG +
Preference number: 5 (lower is better)
Translates to: NGRAYSLISANTAVLASPTDICR*FISPSS
Trigger: CGACGACGGGGAAATGAACAACCTGCAGATATCGGT...AGGGCTGGCAAGGACAGCAGTGTTGGCTGAGATAAGGCTGTAGGCTCTTCCATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CAA 90 bp TCTCCCCATGTATTGGACAGAGCAGCAAAATGTACGACAATGGCTGTATGTCAGGCATGCACCTTCACTTaGGCCCAGGCCACGCCCTTC +
Preference number: 5 (lower is better)
Translates to: SPHVLDRAAKCTTMAVCQACTFT*AQATPF
Trigger: GAAGGGCGTGGCCTGGGCCAAAGTGAAGGTGCATGC...CTGACATACAGCCATTGTCGTACATTTTGCTGCTCTGTCCAATACATGGGGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CAA 90 bp GGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTAGCATGCACCTTCACTTaGGCCCAGGCCACGCCCTTC +
Preference number: 5 (lower is better)
Translates to: GCNRVTCKQTMFGIGLPVACTFT*AQATPF
Trigger: GAAGGGCGTGGCCTGGGCCAAAGTGAAGGTGCATGC...TACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp CTCCCTACCCAGAGGTGTATGAAAGACTTGTACACTGAGAGGATTGCAGCCGGTTCAGCCTCCCGTTGCTaGAAGTGTGCCTGCATGAAG +
Preference number: 5 (lower is better)
Translates to: LPTQRCMKDLYTERIAAGSASRC*KCACMK
Trigger: CTTCATGCAGGCACACTTCAAGCAACGGGAGGCTGA...ACCGGCTGCAATCCTCTCAGTGTACAAGTCTTTCATACACCTCTGGGTAGGGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp TCAGGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCATCCACGCCGGTGTGGTaGGCGATGCAGTTGGCCTTC +
Preference number: 5 (lower is better)
Translates to: SGCNRVTCKQTMFGIGLPSTPVW*AMQLAF
Trigger: GAAGGCCAACTGCATCGCCAACCACACCGGCGTGGA...TGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCCTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp GGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTATCCACGCCGGTGTGGTaGGCGATGCAGTTGGCCTTC +
Preference number: 5 (lower is better)
Translates to: GCNRVTCKQTMFGIGLPVSTPVW*AMQLAF
Trigger: GAAGGCCAACTGCATCGCCAACCACACCGGCGTGGA...TACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp CTCCCTACCCAGAGGTGTATGAAAGACTTGTACACTGAGAGGATTGCAGCCGGTCTGGTATCGTCCAGTTaGTCTTTGCTGCCTTCGGGG +
Preference number: 5 (lower is better)
Translates to: LPTQRCMKDLYTERIAAGLVSSS*SLLPSG
Trigger: CCCCGAAGGCAGCAAAGACAAACTGGACGATACCAG...ACCGGCTGCAATCCTCTCAGTGTACAAGTCTTTCATACACCTCTGGGTAGGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp CTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCCGAAGGCTGGTATCGTCCAGTTaGTCTTTGCTGCCTTCGGGG +
Preference number: 5 (lower is better)
Translates to: LTISPNTVNSAGLGPVRRLVSSS*SLLPSG
Trigger: CCCCGAAGGCAGCAAAGACAAACTGGACGATACCAG...CCTTCGGACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp AATCATAACCATGAACAAGGCAGAAGTAAGGCCAGACCAGCTAGGTTGGTTGAAAGCAGGAGGCCGATGTaGAACAGGGCGGGCAGCGAC +
Preference number: 5 (lower is better)
Translates to: NHNHEQGRSKARPARLVESRRPM*NRAGSD
Trigger: GTCGCTGCCCGCCCTGTTCAACATCGGCCTCCTGCT...TTCAACCAACCTAGCTGGTCTGGCCTTACTTCTGCCTTGTTCATGGTTATGATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CAA 90 bp ACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGCATCTCCGCAGCTTCCCGCAGTCCCCTTaGAAGCCACTTCCTGGGTGC +
Preference number: 5 (lower is better)
Translates to: TCKQTMFGIGLPVQHLRSFPQSP*KPLPGC
Trigger: GCACCCAGGAAGTGGCTTCAAAGGGGACTGCGGGAA...GCTGCGGAGATGCTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp CTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCCGAAGGTCTCCCAGGACTCGCTaGGTGAAGGCGAAAAGGATG +
Preference number: 5 (lower is better)
Translates to: LTISPNTVNSAGLGPVRRSPRTR*VKAKRM
Trigger: CATCCTTTTCGCCTTCACCAAGCGAGTCCTGGGAGA...CCTTCGGACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp CCTCTTCCTCAAGTCCAAAGAATACTTTGCCCTTCCCTGGCGCCTTTGTCTCTGTCTCCCAGGACTCGCTaGGTGAAGGCGAAAAGGATG +
Preference number: 5 (lower is better)
Translates to: PLPQVQRILCPSLAPLSLSPRTR*VKAKRM
Trigger: CATCCTTTTCGCCTTCACCAAGCGAGTCCTGGGAGA...CAGAGACAAAGGCGCCAGGGAAGGGCAAAGTATTCTTTGGACTTGAGGAAGAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CAA 90 bp TGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGGACACCTCTTCCTGCTaGCGCCGCAGAGTGGTCGTG +
Preference number: 5 (lower is better)
Translates to: CNRVTCKQTMFGIGLPVQDTSSC*RRRVVV
Trigger: CACGACCACTCTGCGGCGCAAGCAGGAAGAGGTGTC...CTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS CCA 90 bp TTTTCTGGAAGTCGCCGTTCCTGTGAATGTCCACGCCGGTGTGGTTaGCGATGCAGTTGGCCTTCTTCTCATACAGCTCGTCTAAAGGTT +
Preference number: 5 (lower is better)
Translates to: FSGSRRSCECPRRCG*RCSWPSSHTARLKV
Trigger: AACCTTTAGACGAGCTGTATGAGAAGAAGGCCAACTGCATCGCCAACCACACCGGCGTGGACATTCACAGGAACGGCGACTTCCAGAAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp TGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGTCGGGGGTGAAAGGCTaGAAACTGTCGGGGCCTGGT +
Preference number: 5 (lower is better)
Translates to: CNRVTCKQTMFGIGLPVQSGVKG*KLSGPG
Trigger: ACCAGGCCCCGACAGTTTCAAGCCTTTCACCCCCGA...CTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp TCAGGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCATCGGGGGTGAAAGGCTaGAAACTGTCGGGGCCTGGT +
Preference number: 5 (lower is better)
Translates to: SGCNRVTCKQTMFGIGLPSGVKG*KLSGPG
Trigger: ACCAGGCCCCGACAGTTTCAAGCCTTTCACCCCCGA...TGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCCTGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp TCTCCCCATGTATTGGACAGAGCAGCAAAATGTACGACAATGGCTGTATGTCAGTCGGGGGTGAAAGGCTaGAAACTGTCGGGGCCTGGT +
Preference number: 5 (lower is better)
Translates to: SPHVLDRAAKCTTMAVCQSGVKG*KLSGPG
Trigger: ACCAGGCCCCGACAGTTTCAAGCCTTTCACCCCCGA...CTGACATACAGCCATTGTCGTACATTTTGCTGCTCTGTCCAATACATGGGGAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CAA 90 bp TGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGGGTGGTTTCTTGAGCTaGCTCTCGGCGATGCGCCTC +
Preference number: 5 (lower is better)
Translates to: CNRVTCKQTMFGIGLPVQGGFLS*LSAMRL
Trigger: GAGGCGCATCGCCGAGAGCAAGCTCAAGAAACCACC...CTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp CTCACTGACTGGCTGTGGTTTGTTCTATGCAAAACTAGTCAGGTGGACTGTGAGTGGCTGCCATCCGCCTaGGGTGGTTTCTTGAGCTTG +
Preference number: 5 (lower is better)
Translates to: LTDWLWFVLCKTSQVDCEWLPSA*GGFLSL
Trigger: CAAGCTCAAGAAACCACCCAAGGCGGATGGCAGCCA...CTCACAGTCCACCTGACTAGTTTTGCATAGAACAAACCACAGCCAGTCAGTGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CAA 90 bp ACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGCATCTCCGCAGCTGGCTGCCATCCGCCTaGGGTGGTTTCTTGAGCTTG +
Preference number: 5 (lower is better)
Translates to: TCKQTMFGIGLPVQHLRSWLPSA*GGFLSL
Trigger: CAAGCTCAAGAAACCACCCAAGGCGGATGGCAGCCA...GCTGCGGAGATGCTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp CTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCCGAAGGAGGTCACTGTTTGGCTaGGGCTTGCTGTCTTCATCG +
Preference number: 5 (lower is better)
Translates to: LTISPNTVNSAGLGPVRRRSLFG*GLLSSS
Trigger: CGATGAAGACAGCAAGCCCAAGCCAAACAGTGACCT...CCTTCGGACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp CCGGTATGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGCCTCCAGGTCACTGTTaGGCTTGGGCTTGCTGTCTT +
Preference number: 5 (lower is better)
Translates to: PVWNSYHFSKYSEQCRAGPPGHC*AWACCL
Trigger: AAGACAGCAAGCCCAAGCCAAACAGTGACCTGGAGG...CCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCATACCGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp GGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTAAACCGCAACCAGGCCTaGCGGGATGTCCCCGTAGAT +
Preference number: 5 (lower is better)
Translates to: GCNRVTCKQTMFGIGLPVNRNQA*RDVPVD
Trigger: ATCTACGGGGACATCCCGCAAGGCCTGGTTGCGGTT...TACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp ACTGGACTGAACCTCTCAGACTGTAAGCCAGCCCCAATTAAACATTGTCCTTTGAACCGCAACCAGGCCTaGCGGGATGTCCCCGTAGAT +
Preference number: 5 (lower is better)
Translates to: TGLNLSDCKPAPIKHCPLNRNQA*RDVPVD
Trigger: ATCTACGGGGACATCCCGCAAGGCCTGGTTGCGGTT...CAAAGGACAATGTTTAATTGGGGCTGGCTTACAGTCTGAGAGGTTCAGTCCAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096198.10
CDS-3UTR CAA 90 bp CCGGTATGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTGCTCCAGCATCGCCTaGAACTCTGCCTCTTTCTGC +
Preference number: 5 (lower is better)
Translates to: PVWNSYHFSKYSEQCRAGCSSIA*NSASFC
Trigger: GCAGAAAGAGGCAGAGTTCAAGGCGATGCTGGAGCA...CCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCATACCGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp GCCATTTCCGCATTAACAGAACAGGGAACGAGTGGAGGGGTAAGGAAGGAGATATGCTCCAGCATCGCCTaGAACTCTGCCTCTTTCTGC +
Preference number: 5 (lower is better)
Translates to: AISALTEQGTSGGVRKEICSSIA*NSASFC
Trigger: GCAGAAAGAGGCAGAGTTCAAGGCGATGCTGGAGCA...TATCTCCTTCCTTACCCCTCCACTCGTTCCCTGTTCTGTTAATGCGGAAATGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CAA 90 bp TGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGTCCTCCTGCTGCTTCTaGAGCTGCTCCAGCATCGCC +
Preference number: 5 (lower is better)
Translates to: CNRVTCKQTMFGIGLPVQSSCCF*SCSSIA
Trigger: GGCGATGCTGGAGCAGCTCAAGAAGCAGCAGGAGGA...CTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp AATGGAAGAGCCTACAGCCTTATCTCAGCCAACACTGCTGTCCTTGCCAGCCCTCTGAAGATGCTGCTTTaGCTGTTGTGTCGGGAAAGG +
Preference number: 5 (lower is better)
Translates to: NGRAYSLISANTAVLASPLKMLL*LLCRER
Trigger: CCTTTCCCGACACAACAGCAAAAGCAGCATCTTCAG...AGGGCTGGCAAGGACAGCAGTGTTGGCTGAGATAAGGCTGTAGGCTCTTCCATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CAA 90 bp TTTACAGTGACATTAATAGTACAAGCCATTCGGGGCCAGAGTCTCCCCATGTATTCTCCACCTCAGTTGTaGCCTCAGGCAGGAGCCGCC +
Preference number: 5 (lower is better)
Translates to: FTVTLIVQAIRGQSLPMYSPPQL*PQAGAA
Trigger: GGCGGCTCCTGCCTGAGGCAACAACTGAGGTGGAGA...ATACATGGGGAGACTCTGGCCCCGAATGGCTTGTACTATTAATGTCACTGTAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000082209.13
ENSMUST00000108910.10
CDS-3UTR CAA 90 bp CCTCTTCCTCAAGTCCAAAGAATACTTTGCCCTTCCCTGGCGCCTTTGTCTCTGACCGATATCTGCAGGTaGTTCATTTCCCCGTCGTCG +
Preference number: 5 (lower is better)
Translates to: PLPQVQRILCPSLAPLSLTDICR*FISPSS
Trigger: CGACGACGGGGAAATGAACAACCTGCAGATATCGGT...CAGAGACAAAGGCGCCAGGGAAGGGCAAAGTATTCTTTGGACTTGAGGAAGAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CAA 90 bp CTCCCTACCCAGAGGTGTATGAAAGACTTGTACACTGAGAGGATTGCAGCCGGTACCGATATCTGCAGGTaGTTCATTTCCCCGTCGTCG +
Preference number: 5 (lower is better)
Translates to: LPTQRCMKDLYTERIAAGTDICR*FISPSS
Trigger: CGACGACGGGGAAATGAACAACCTGCAGATATCGGT...ACCGGCTGCAATCCTCTCAGTGTACAAGTCTTTCATACACCTCTGGGTAGGGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp TTTACAGTGACATTAATAGTACAAGCCATTCGGGGCCAGAGTCTCCCCATGTATGCATGCACCTTCACTTaGGCCCAGGCCACGCCCTTC +
Preference number: 5 (lower is better)
Translates to: FTVTLIVQAIRGQSLPMYACTFT*AQATPF
Trigger: GAAGGGCGTGGCCTGGGCCAAAGTGAAGGTGCATGC...ATACATGGGGAGACTCTGGCCCCGAATGGCTTGTACTATTAATGTCACTGTAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CAA 90 bp CTCCCTACCCAGAGGTGTATGAAAGACTTGTACACTGAGAGGATTGCAGCCGGTTGGTTGGCGATGCAGTaGGCCTTCTTCTCATACAGC +
Preference number: 5 (lower is better)
Translates to: LPTQRCMKDLYTERIAAGWLAMQ*AFFSYS
Trigger: GCTGTATGAGAAGAAGGCCAACTGCATCGCCAACCA...ACCGGCTGCAATCCTCTCAGTGTACAAGTCTTTCATACACCTCTGGGTAGGGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp TTTACAGTGACATTAATAGTACAAGCCATTCGGGGCCAGAGTCTCCCCATGTATTCCACGCCGGTGTGGTaGGCGATGCAGTTGGCCTTC +
Preference number: 5 (lower is better)
Translates to: FTVTLIVQAIRGQSLPMYSTPVW*AMQLAF
Trigger: GAAGGCCAACTGCATCGCCAACCACACCGGCGTGGA...ATACATGGGGAGACTCTGGCCCCGAATGGCTTGTACTATTAATGTCACTGTAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CAA 90 bp GGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCCTGGTATCGTCCAGTTaGTCTTTGCTGCCTTCGGGG +
Preference number: 5 (lower is better)
Translates to: GTLTISPNTVNSAGLGPVLVSSS*SLLPSG
Trigger: CCCCGAAGGCAGCAAAGACAAACTGGACGATACCAG...GACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp ACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGCATCTCCGCAGCATCCCTTTGGCGCCCTaGATCAGACGCAAGATGCGC +
Preference number: 5 (lower is better)
Translates to: TCKQTMFGIGLPVQHLRSIPLAP*IRRKMR
Trigger: GCGCATCTTGCGTCTGATCAAGGGCGCCAAAGGGAT...GCTGCGGAGATGCTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp GAGAGCGTTATTCTACAAATGGAAGAGCCTACAGCCTTATCTCAGCCAACACTGTTCCCGCAGTCCCCTTaGAAGCCACTTCCTGGGTGC +
Preference number: 5 (lower is better)
Translates to: ESVILQMEEPTALSQPTLFPQSP*KPLPGC
Trigger: GCACCCAGGAAGTGGCTTCAAAGGGGACTGCGGGAA...CAGTGTTGGCTGAGATAAGGCTGTAGGCTCTTCCATTTGTAGAATAACGCTCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CAA 90 bp ACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGCATCTCCGCAGCGACACTTTGGAAGGATaGGACGCCACGAACCGCTCC +
Preference number: 5 (lower is better)
Translates to: TCKQTMFGIGLPVQHLRSDTLEG*DATNRS
Trigger: GGAGCGGTTCGTGGCGTCCAATCCTTCCAAAGTGTC...GCTGCGGAGATGCTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp CTCACTGACTGGCTGTGGTTTGTTCTATGCAAAACTAGTCAGGTGGACTGTGAGGACACTTTGGAAGGATaGGACGCCACGAACCGCTCC +
Preference number: 5 (lower is better)
Translates to: LTDWLWFVLCKTSQVDCEDTLEG*DATNRS
Trigger: GGAGCGGTTCGTGGCGTCCAATCCTTCCAAAGTGTC...CTCACAGTCCACCTGACTAGTTTTGCATAGAACAAACCACAGCCAGTCAGTGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CAA 90 bp TGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTGACACTTTGGAAGGATaGGACGCCACGAACCGCTCC +
Preference number: 5 (lower is better)
Translates to: WNSYHFSKYSEQCRAGSCDTLEG*DATNRS
Trigger: GGAGCGGTTCGTGGCGTCCAATCCTTCCAAAGTGTC...ACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp AATCATAACCATGAACAAGGCAGAAGTAAGGCCAGACCAGCTAGGTTGGTTGAAGACACCTCTTCCTGCTaGCGCCGCAGAGTGGTCGTG +
Preference number: 5 (lower is better)
Translates to: NHNHEQGRSKARPARLVEDTSSC*RRRVVV
Trigger: CACGACCACTCTGCGGCGCAAGCAGGAAGAGGTGTC...TTCAACCAACCTAGCTGGTCTGGCCTTACTTCTGCCTTGTTCATGGTTATGATT
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CAA 90 bp TTTACAGTGACATTAATAGTACAAGCCATTCGGGGCCAGAGTCTCCCCATGTATTCGGGGGTGAAAGGCTaGAAACTGTCGGGGCCTGGT +
Preference number: 5 (lower is better)
Translates to: FTVTLIVQAIRGQSLPMYSGVKG*KLSGPG
Trigger: ACCAGGCCCCGACAGTTTCAAGCCTTTCACCCCCGA...ATACATGGGGAGACTCTGGCCCCGAATGGCTTGTACTATTAATGTCACTGTAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CAA 90 bp TTTACAGTGACATTAATAGTACAAGCCATTCGGGGCCAGAGTCTCCCCATGTATGGTGGTTTCTTGAGCTaGCTCTCGGCGATGCGCCTC +
Preference number: 5 (lower is better)
Translates to: FTVTLIVQAIRGQSLPMYGGFLS*LSAMRL
Trigger: GAGGCGCATCGCCGAGAGCAAGCTCAAGAAACCACC...ATACATGGGGAGACTCTGGCCCCGAATGGCTTGTACTATTAATGTCACTGTAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CAA 90 bp GGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCAGGTCACTGTTTGGCTaGGGCTTGCTGTCTTCATCG +
Preference number: 5 (lower is better)
Translates to: GTLTISPNTVNSAGLGPVRSLFG*GLLSSS
Trigger: CGATGAAGACAGCAAGCCCAAGCCAAACAGTGACCT...GACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp TGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCCTCCAGGTCACTGTTaGGCTTGGGCTTGCTGTCTT +
Preference number: 5 (lower is better)
Translates to: WNSYHFSKYSEQCRAGSCPPGHC*AWACCL
Trigger: AAGACAGCAAGCCCAAGCCAAACAGTGACCTGGAGG...ACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp CTCACTGACTGGCTGTGGTTTGTTCTATGCAAAACTAGTCAGGTGGACTGTGAGGGCCACACGACACACTaGTTTCGAAGGTTCCCCATG +
Preference number: 5 (lower is better)
Translates to: LTDWLWFVLCKTSQVDCEGHTTH*FRRFPM
Trigger: CATGGGGAACCTTCGAAACAAGTGTGTCGTGTGGCC...CTCACAGTCCACCTGACTAGTTTTGCATAGAACAAACCACAGCCAGTCAGTGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CAA 90 bp ACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGCATCTCCGCAGCTGCTCCAGCATCGCCTaGAACTCTGCCTCTTTCTGC +
Preference number: 5 (lower is better)
Translates to: TCKQTMFGIGLPVQHLRSCSSIA*NSASFC
Trigger: GCAGAAAGAGGCAGAGTTCAAGGCGATGCTGGAGCA...GCTGCGGAGATGCTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp CTCCCTACCCAGAGGTGTATGAAAGACTTGTACACTGAGAGGATTGCAGCCGGTCTGAAGATGCTGCTTTaGCTGTTGTGTCGGGAAAGG +
Preference number: 5 (lower is better)
Translates to: LPTQRCMKDLYTERIAAGLKMLL*LLCRER
Trigger: CCTTTCCCGACACAACAGCAAAAGCAGCATCTTCAG...ACCGGCTGCAATCCTCTCAGTGTACAAGTCTTTCATACACCTCTGGGTAGGGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp GCTACAATACATAGCACTTTTATCTCTACCCCAGGGTCAGTTCTCCAGGATGAAAGCGACACCACGCCATaGCAGTCCACGGTGCTGTTG +
Preference number: 5 (lower is better)
Translates to: ATIHSTFISTPGSVLQDESDTTP*QSTVLL
Trigger: CAACAGCACCGTGGACTGCAATGGCGTGGTGTCGCT...TTCATCCTGGAGAACTGACCCTGGGGTAGAGATAAAAGTGCTATGTATTGTAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CAA 90 bp TTTACAGTGACATTAATAGTACAAGCCATTCGGGGCCAGAGTCTCCCCATGTATAGCGACACCACGCCATaGCAGTCCACGGTGCTGTTG +
Preference number: 5 (lower is better)
Translates to: FTVTLIVQAIRGQSLPMYSDTTP*QSTVLL
Trigger: CAACAGCACCGTGGACTGCAATGGCGTGGTGTCGCT...ATACATGGGGAGACTCTGGCCCCGAATGGCTTGTACTATTAATGTCACTGTAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CAA 90 bp CTCACTGACTGGCTGTGGTTTGTTCTATGCAAAACTAGTCAGGTGGACTGTGAGTCAGCCTCCCGTTGCTaGAAGTGTGCCTGCATGAAG +
Preference number: 5 (lower is better)
Translates to: LTDWLWFVLCKTSQVDCESASRC*KCACMK
Trigger: CTTCATGCAGGCACACTTCAAGCAACGGGAGGCTGA...CTCACAGTCCACCTGACTAGTTTTGCATAGAACAAACCACAGCCAGTCAGTGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CAA 90 bp ACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGCATCTCCGCAGCTCAGCCTCCCGTTGCTaGAAGTGTGCCTGCATGAAG +
Preference number: 5 (lower is better)
Translates to: TCKQTMFGIGLPVQHLRSSASRC*KCACMK
Trigger: CTTCATGCAGGCACACTTCAAGCAACGGGAGGCTGA...GCTGCGGAGATGCTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp CTCACTGACTGGCTGTGGTTTGTTCTATGCAAAACTAGTCAGGTGGACTGTGAGCTGGTATCGTCCAGTTaGTCTTTGCTGCCTTCGGGG +
Preference number: 5 (lower is better)
Translates to: LTDWLWFVLCKTSQVDCELVSSS*SLLPSG
Trigger: CCCCGAAGGCAGCAAAGACAAACTGGACGATACCAG...CTCACAGTCCACCTGACTAGTTTTGCATAGAACAAACCACAGCCAGTCAGTGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CAA 90 bp ACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGCATCTCCGCAGCAGGATCCACCACGACTaGCCTAGTCCTTCCTCGATG +
Preference number: 5 (lower is better)
Translates to: TCKQTMFGIGLPVQHLRSRIHHD*PSPSSM
Trigger: CATCGAGGAAGGACTAGGCAAGTCGTGGTGGATCCT...GCTGCGGAGATGCTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp TGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGATCCCTTTGGCGCCCTaGATCAGACGCAAGATGCGC +
Preference number: 5 (lower is better)
Translates to: CNRVTCKQTMFGIGLPVQIPLAP*IRRKMR
Trigger: GCGCATCTTGCGTCTGATCAAGGGCGCCAAAGGGAT...CTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp GTAGTGGTCAATTGGTTAATTATGTCTCCCTACCCAGAGGTGTATGAAAGACTTAGCAGGAGGCCGATGTaGAACAGGGCGGGCAGCGAC +
Preference number: 5 (lower is better)
Translates to: VVVNWLIMSPYPEVYERLSRRPM*NRAGSD
Trigger: GTCGCTGCCCGCCCTGTTCAACATCGGCCTCCTGCT...AAGTCTTTCATACACCTCTGGGTAGGGAGACATAATTAACCAATTGACCACTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp TGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTTCTCCCAGGACTCGCTaGGTGAAGGCGAAAAGGATG +
Preference number: 5 (lower is better)
Translates to: WNSYHFSKYSEQCRAGSCSPRTR*VKAKRM
Trigger: CATCCTTTTCGCCTTCACCAAGCGAGTCCTGGGAGA...ACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp CCTCTTCCTCAAGTCCAAAGAATACTTTGCCCTTCCCTGGCGCCTTTGTCTCTGCTCCCTGACTTCTTTTaGCCTCTTGGCTCTTTCCCT +
Preference number: 5 (lower is better)
Translates to: PLPQVQRILCPSLAPLSLLPDFF*PLGSFP
Trigger: AGGGAAAGAGCCAAGAGGCAAAAAGAAGTCAGGGAG...CAGAGACAAAGGCGCCAGGGAAGGGCAAAGTATTCTTTGGACTTGAGGAAGAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS GCA 90 bp TTCTCATACAGCTCGTCTAAAGGTTTCACTTCATCAGCCTCCCGTTaGTTGAAGTGTGCCTGCATGAAGGCATGCACCTTCACTTTGGCC +
Preference number: 5 (lower is better)
Translates to: FSYSSSKGFTSSASR*LKCACMKACTFTLA
Trigger: GGCCAAAGTGAAGGTGCATGCCTTCATGCAGGCACACTTCAAGCAACGGGAGGCTGATGAAGTGAAACCTTTAGACGAGCTGTATGAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp GAGAGCGTTATTCTACAAATGGAAGAGCCTACAGCCTTATCTCAGCCAACACTGCCTCCAGGTCACTGTTaGGCTTGGGCTTGCTGTCTT +
Preference number: 5 (lower is better)
Translates to: ESVILQMEEPTALSQPTLPPGHC*AWACCL
Trigger: AAGACAGCAAGCCCAAGCCAAACAGTGACCTGGAGG...CAGTGTTGGCTGAGATAAGGCTGTAGGCTCTTCCATTTGTAGAATAACGCTCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CAA 90 bp TGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGGGCCACACGACACACTaGTTTCGAAGGTTCCCCATG +
Preference number: 5 (lower is better)
Translates to: CNRVTCKQTMFGIGLPVQGHTTH*FRRFPM
Trigger: CATGGGGAACCTTCGAAACAAGTGTGTCGTGTGGCC...CTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp GGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTAGGCCACACGACACACTaGTTTCGAAGGTTCCCCATG +
Preference number: 5 (lower is better)
Translates to: GCNRVTCKQTMFGIGLPVGHTTH*FRRFPM
Trigger: CATGGGGAACCTTCGAAACAAGTGTGTCGTGTGGCC...TACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp TGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGTGCTCCAGCATCGCCTaGAACTCTGCCTCTTTCTGC +
Preference number: 5 (lower is better)
Translates to: CNRVTCKQTMFGIGLPVQCSSIA*NSASFC
Trigger: GCAGAAAGAGGCAGAGTTCAAGGCGATGCTGGAGCA...CTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp GCTACAATACATAGCACTTTTATCTCTACCCCAGGGTCAGTTCTCCAGGATGAATTCCTCCCTATCCTATaGTCTGGCAGCCGGAAGGCC +
Preference number: 5 (lower is better)
Translates to: ATIHSTFISTPGSVLQDEFLPIL*SGSRKA
Trigger: GGCCTTCCGGCTGCCAGACAATAGGATAGGGAGGAA...TTCATCCTGGAGAACTGACCCTGGGGTAGAGATAAAAGTGCTATGTATTGTAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CAA 90 bp TGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGTCAGCCTCCCGTTGCTaGAAGTGTGCCTGCATGAAG +
Preference number: 5 (lower is better)
Translates to: CNRVTCKQTMFGIGLPVQSASRC*KCACMK
Trigger: CTTCATGCAGGCACACTTCAAGCAACGGGAGGCTGA...CTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp CTCACTGACTGGCTGTGGTTTGTTCTATGCAAAACTAGTCAGGTGGACTGTGAGTGGTTGGCGATGCAGTaGGCCTTCTTCTCATACAGC +
Preference number: 5 (lower is better)
Translates to: LTDWLWFVLCKTSQVDCEWLAMQ*AFFSYS
Trigger: GCTGTATGAGAAGAAGGCCAACTGCATCGCCAACCA...CTCACAGTCCACCTGACTAGTTTTGCATAGAACAAACCACAGCCAGTCAGTGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CAA 90 bp CTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCCGAAGGACGGTCAGGTTTGGGTaGTTAATGAAGGACATGTGG +
Preference number: 5 (lower is better)
Translates to: LTISPNTVNSAGLGPVRRTVRFG*LMKDMW
Trigger: CCACATGTCCTTCATTAACAACCCAAACCTGACCGT...CCTTCGGACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp GAGAGCGTTATTCTACAAATGGAAGAGCCTACAGCCTTATCTCAGCCAACACTGCTGGTATCGTCCAGTTaGTCTTTGCTGCCTTCGGGG +
Preference number: 5 (lower is better)
Translates to: ESVILQMEEPTALSQPTLLVSSS*SLLPSG
Trigger: CCCCGAAGGCAGCAAAGACAAACTGGACGATACCAG...CAGTGTTGGCTGAGATAAGGCTGTAGGCTCTTCCATTTGTAGAATAACGCTCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CAA 90 bp CTCACTGACTGGCTGTGGTTTGTTCTATGCAAAACTAGTCAGGTGGACTGTGAGAGTCCTTCCTCGATGTaGACCTGGCAGCACTTGAAC +
Preference number: 5 (lower is better)
Translates to: LTDWLWFVLCKTSQVDCESPSSM*TWQHLN
Trigger: GTTCAAGTGCTGCCAGGTCAACATCGAGGAAGGACT...CTCACAGTCCACCTGACTAGTTTTGCATAGAACAAACCACAGCCAGTCAGTGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CAA 90 bp TGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTAGTCCTTCCTCGATGTaGACCTGGCAGCACTTGAAC +
Preference number: 5 (lower is better)
Translates to: WNSYHFSKYSEQCRAGSCSPSSM*TWQHLN
Trigger: GTTCAAGTGCTGCCAGGTCAACATCGAGGAAGGACT...ACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp TCAGGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAAGGATCCACCACGACTaGCCTAGTCCTTCCTCGATG +
Preference number: 5 (lower is better)
Translates to: SGCNRVTCKQTMFGIGLPRIHHD*PSPSSM
Trigger: CATCGAGGAAGGACTAGGCAAGTCGTGGTGGATCCT...TGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCCTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp TGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGAGGATCCACCACGACTaGCCTAGTCCTTCCTCGATG +
Preference number: 5 (lower is better)
Translates to: CNRVTCKQTMFGIGLPVQRIHHD*PSPSSM
Trigger: CATCGAGGAAGGACTAGGCAAGTCGTGGTGGATCCT...CTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp TCTCCCCATGTATTGGACAGAGCAGCAAAATGTACGACAATGGCTGTATGTCAGAGGATCCACCACGACTaGCCTAGTCCTTCCTCGATG +
Preference number: 5 (lower is better)
Translates to: SPHVLDRAAKCTTMAVCQRIHHD*PSPSSM
Trigger: CATCGAGGAAGGACTAGGCAAGTCGTGGTGGATCCT...CTGACATACAGCCATTGTCGTACATTTTGCTGCTCTGTCCAATACATGGGGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CAA 90 bp TGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCGGATCTCTGTGTTGTaGCCCTCCATGAGCTTCTCA +
Preference number: 5 (lower is better)
Translates to: WNSYHFSKYSEQCRAGSCRISVL*PSMSFS
Trigger: TGAGAAGCTCATGGAGGGCAACAACACAGAGATCCG...ACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp CTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCCGAAGGGATGTCGAAGGCTTGTaGCGTGACGAAATCAAAGAC +
Preference number: 5 (lower is better)
Translates to: LTISPNTVNSAGLGPVRRDVEGL*RDEIKD
Trigger: GTCTTTGATTTCGTCACGCAACAAGCCTTCGACATC...CCTTCGGACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp CTCCCTACCCAGAGGTGTATGAAAGACTTGTACACTGAGAGGATTGCAGCCGGTGATGTCGAAGGCTTGTaGCGTGACGAAATCAAAGAC +
Preference number: 5 (lower is better)
Translates to: LPTQRCMKDLYTERIAAGDVEGL*RDEIKD
Trigger: GTCTTTGATTTCGTCACGCAACAAGCCTTCGACATC...ACCGGCTGCAATCCTCTCAGTGTACAAGTCTTTCATACACCTCTGGGTAGGGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp TTTACAGTGACATTAATAGTACAAGCCATTCGGGGCCAGAGTCTCCCCATGTATATCCCTTTGGCGCCCTaGATCAGACGCAAGATGCGC +
Preference number: 5 (lower is better)
Translates to: FTVTLIVQAIRGQSLPMYIPLAP*IRRKMR
Trigger: GCGCATCTTGCGTCTGATCAAGGGCGCCAAAGGGAT...ATACATGGGGAGACTCTGGCCCCGAATGGCTTGTACTATTAATGTCACTGTAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CAA 90 bp ACTTTTCTAAAGATCAGGTATCGTTTAGGGCAGCATCAGGCTCCATGCACTCACTCTCCCAGGACTCGCTaGGTGAAGGCGAAAAGGATG +
Preference number: 5 (lower is better)
Translates to: TFLKIRYRLGQHQAPCTHSPRTR*VKAKRM
Trigger: CATCCTTTTCGCCTTCACCAAGCGAGTCCTGGGAGA...GTGAGTGCATGGAGCCTGATGCTGCCCTAAACGATACCTGATCTTTAGAAAAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CAA 90 bp CCTCTTCCTCAAGTCCAAAGAATACTTTGCCCTTCCCTGGCGCCTTTGTCTCTGCCTCCATTCTCCAGCTaGTTGGAAGTGATCTTTCTG +
Preference number: 5 (lower is better)
Translates to: PLPQVQRILCPSLAPLSLPPFSS*LEVIFL
Trigger: CAGAAAGATCACTTCCAACAAGCTGGAGAATGGAGG...CAGAGACAAAGGCGCCAGGGAAGGGCAAAGTATTCTTTGGACTTGAGGAAGAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CAA 90 bp GTAGTGGTCAATTGGTTAATTATGTCTCCCTACCCAGAGGTGTATGAAAGACTTGGTGGTTTCTTGAGCTaGCTCTCGGCGATGCGCCTC +
Preference number: 5 (lower is better)
Translates to: VVVNWLIMSPYPEVYERLGGFLS*LSAMRL
Trigger: GAGGCGCATCGCCGAGAGCAAGCTCAAGAAACCACC...AAGTCTTTCATACACCTCTGGGTAGGGAGACATAATTAACCAATTGACCACTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp TGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGAGGTCACTGTTTGGCTaGGGCTTGCTGTCTTCATCG +
Preference number: 5 (lower is better)
Translates to: CNRVTCKQTMFGIGLPVQRSLFG*GLLSSS
Trigger: CGATGAAGACAGCAAGCCCAAGCCAAACAGTGACCT...CTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp TCTCCCCATGTATTGGACAGAGCAGCAAAATGTACGACAATGGCTGTATGTCAGAGGTCACTGTTTGGCTaGGGCTTGCTGTCTTCATCG +
Preference number: 5 (lower is better)
Translates to: SPHVLDRAAKCTTMAVCQRSLFG*GLLSSS
Trigger: CGATGAAGACAGCAAGCCCAAGCCAAACAGTGACCT...CTGACATACAGCCATTGTCGTACATTTTGCTGCTCTGTCCAATACATGGGGAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CAA 90 bp CTCACTGACTGGCTGTGGTTTGTTCTATGCAAAACTAGTCAGGTGGACTGTGAGCTGAAGATGCTGCTTTaGCTGTTGTGTCGGGAAAGG +
Preference number: 5 (lower is better)
Translates to: LTDWLWFVLCKTSQVDCELKMLL*LLCRER
Trigger: CCTTTCCCGACACAACAGCAAAAGCAGCATCTTCAG...CTCACAGTCCACCTGACTAGTTTTGCATAGAACAAACCACAGCCAGTCAGTGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CAA 90 bp TGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCTGAAGATGCTGCTTTaGCTGTTGTGTCGGGAAAGG +
Preference number: 5 (lower is better)
Translates to: WNSYHFSKYSEQCRAGSCLKMLL*LLCRER
Trigger: CCTTTCCCGACACAACAGCAAAAGCAGCATCTTCAG...ACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp GCTACAATACATAGCACTTTTATCTCTACCCCAGGGTCAGTTCTCCAGGATGAATCAGCCTCCCGTTGCTaGAAGTGTGCCTGCATGAAG +
Preference number: 5 (lower is better)
Translates to: ATIHSTFISTPGSVLQDESASRC*KCACMK
Trigger: CTTCATGCAGGCACACTTCAAGCAACGGGAGGCTGA...TTCATCCTGGAGAACTGACCCTGGGGTAGAGATAAAAGTGCTATGTATTGTAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CAA 90 bp GAGAGCGTTATTCTACAAATGGAAGAGCCTACAGCCTTATCTCAGCCAACACTGTTCATCAGCCTCCCGTaGCTTGAAGTGTGCCTGCAT +
Preference number: 5 (lower is better)
Translates to: ESVILQMEEPTALSQPTLFISLP*LEVCLH
Trigger: ATGCAGGCACACTTCAAGCAACGGGAGGCTGATGAA...CAGTGTTGGCTGAGATAAGGCTGTAGGCTCTTCCATTTGTAGAATAACGCTCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CAA 90 bp TGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGTGGTTGGCGATGCAGTaGGCCTTCTTCTCATACAGC +
Preference number: 5 (lower is better)
Translates to: CNRVTCKQTMFGIGLPVQWLAMQ*AFFSYS
Trigger: GCTGTATGAGAAGAAGGCCAACTGCATCGCCAACCA...CTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp GGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCACGGTCAGGTTTGGGTaGTTAATGAAGGACATGTGG +
Preference number: 5 (lower is better)
Translates to: GTLTISPNTVNSAGLGPVTVRFG*LMKDMW
Trigger: CCACATGTCCTTCATTAACAACCCAAACCTGACCGT...GACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp TGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGAGTCCTTCCTCGATGTaGACCTGGCAGCACTTGAAC +
Preference number: 5 (lower is better)
Translates to: CNRVTCKQTMFGIGLPVQSPSSM*TWQHLN
Trigger: GTTCAAGTGCTGCCAGGTCAACATCGAGGAAGGACT...CTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp GGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACGGATCTCTGTGTTGTaGCCCTCCATGAGCTTCTCA +
Preference number: 5 (lower is better)
Translates to: GCNRVTCKQTMFGIGLPVRISVL*PSMSFS
Trigger: TGAGAAGCTCATGGAGGGCAACAACACAGAGATCCG...TACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp ACTTTTCTAAAGATCAGGTATCGTTTAGGGCAGCATCAGGCTCCATGCACTCACCGGATCTCTGTGTTGTaGCCCTCCATGAGCTTCTCA +
Preference number: 5 (lower is better)
Translates to: TFLKIRYRLGQHQAPCTHRISVL*PSMSFS
Trigger: TGAGAAGCTCATGGAGGGCAACAACACAGAGATCCG...GTGAGTGCATGGAGCCTGATGCTGCCCTAAACGATACCTGATCTTTAGAAAAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CAA 90 bp GTAGTGGTCAATTGGTTAATTATGTCTCCCTACCCAGAGGTGTATGAAAGACTTTTCCCGCAGTCCCCTTaGAAGCCACTTCCTGGGTGC +
Preference number: 5 (lower is better)
Translates to: VVVNWLIMSPYPEVYERLFPQSP*KPLPGC
Trigger: GCACCCAGGAAGTGGCTTCAAAGGGGACTGCGGGAA...AAGTCTTTCATACACCTCTGGGTAGGGAGACATAATTAACCAATTGACCACTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp GCTACAATACATAGCACTTTTATCTCTACCCCAGGGTCAGTTCTCCAGGATGAATCTCCCAGGACTCGCTaGGTGAAGGCGAAAAGGATG +
Preference number: 5 (lower is better)
Translates to: ATIHSTFISTPGSVLQDESPRTR*VKAKRM
Trigger: CATCCTTTTCGCCTTCACCAAGCGAGTCCTGGGAGA...TTCATCCTGGAGAACTGACCCTGGGGTAGAGATAAAAGTGCTATGTATTGTAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CAA 90 bp GGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCCCATTCTCCAGCTTGTaGGAAGTGATCTTTCTGCAG +
Preference number: 5 (lower is better)
Translates to: GTLTISPNTVNSAGLGPVPFSSL*EVIFLQ
Trigger: CTGCAGAAAGATCACTTCCAACAAGCTGGAGAATGG...GACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp TGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCTCCCTGACTTCTTTTaGCCTCTTGGCTCTTTCCCT +
Preference number: 5 (lower is better)
Translates to: WNSYHFSKYSEQCRAGSCLPDFF*PLGSFP
Trigger: AGGGAAAGAGCCAAGAGGCAAAAAGAAGTCAGGGAG...ACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp ACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGCATCTCCGCAGCCTCCCTGACTTCTTTTaGCCTCTTGGCTCTTTCCCT +
Preference number: 5 (lower is better)
Translates to: TCKQTMFGIGLPVQHLRSLPDFF*PLGSFP
Trigger: AGGGAAAGAGCCAAGAGGCAAAAAGAAGTCAGGGAG...GCTGCGGAGATGCTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp AATCATAACCATGAACAAGGCAGAAGTAAGGCCAGACCAGCTAGGTTGGTTGAATTCATCAGCCTCCCGTaGCTTGAAGTGTGCCTGCAT +
Preference number: 5 (lower is better)
Translates to: NHNHEQGRSKARPARLVEFISLP*LEVCLH
Trigger: ATGCAGGCACACTTCAAGCAACGGGAGGCTGATGAA...TTCAACCAACCTAGCTGGTCTGGCCTTACTTCTGCCTTGTTCATGGTTATGATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CAA 90 bp TTTACAGTGACATTAATAGTACAAGCCATTCGGGGCCAGAGTCTCCCCATGTATTGGTTGGCGATGCAGTaGGCCTTCTTCTCATACAGC +
Preference number: 5 (lower is better)
Translates to: FTVTLIVQAIRGQSLPMYWLAMQ*AFFSYS
Trigger: GCTGTATGAGAAGAAGGCCAACTGCATCGCCAACCA...ATACATGGGGAGACTCTGGCCCCGAATGGCTTGTACTATTAATGTCACTGTAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CAA 90 bp CCGGTATGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGCTAACATCCTCTGTGTaGAGGTTCTCGAAATCAGAC +
Preference number: 5 (lower is better)
Translates to: PVWNSYHFSKYSEQCRAGLTSSV*RFSKSD
Trigger: GTCTGATTTCGAGAACCTCAACACAGAGGATGTTAG...CCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCATACCGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp TTTACAGTGACATTAATAGTACAAGCCATTCGGGGCCAGAGTCTCCCCATGTATAGTCCTTCCTCGATGTaGACCTGGCAGCACTTGAAC +
Preference number: 5 (lower is better)
Translates to: FTVTLIVQAIRGQSLPMYSPSSM*TWQHLN
Trigger: GTTCAAGTGCTGCCAGGTCAACATCGAGGAAGGACT...ATACATGGGGAGACTCTGGCCCCGAATGGCTTGTACTATTAATGTCACTGTAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CAA 90 bp GCTACAATACATAGCACTTTTATCTCTACCCCAGGGTCAGTTCTCCAGGATGAACGGATCTCTGTGTTGTaGCCCTCCATGAGCTTCTCA +
Preference number: 5 (lower is better)
Translates to: ATIHSTFISTPGSVLQDERISVL*PSMSFS
Trigger: TGAGAAGCTCATGGAGGGCAACAACACAGAGATCCG...TTCATCCTGGAGAACTGACCCTGGGGTAGAGATAAAAGTGCTATGTATTGTAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CAA 90 bp ACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGCATCTCCGCAGCCCGACGTTGTCGAAGTaGATCTTGACGTTCTTCCAT +
Preference number: 5 (lower is better)
Translates to: TCKQTMFGIGLPVQHLRSPTLSK*ILTFFH
Trigger: ATGGAAGAACGTCAAGATCAACTTCGACAACGTCGG...GCTGCGGAGATGCTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp CTCACTGACTGGCTGTGGTTTGTTCTATGCAAAACTAGTCAGGTGGACTGTGAGCCATTCTCCAGCTTGTaGGAAGTGATCTTTCTGCAG +
Preference number: 5 (lower is better)
Translates to: LTDWLWFVLCKTSQVDCEPFSSL*EVIFLQ
Trigger: CTGCAGAAAGATCACTTCCAACAAGCTGGAGAATGG...CTCACAGTCCACCTGACTAGTTTTGCATAGAACAAACCACAGCCAGTCAGTGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CAA 90 bp TCAGGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCACTCCCTGACTTCTTTTaGCCTCTTGGCTCTTTCCCT +
Preference number: 5 (lower is better)
Translates to: SGCNRVTCKQTMFGIGLPLPDFF*PLGSFP
Trigger: AGGGAAAGAGCCAAGAGGCAAAAAGAAGTCAGGGAG...TGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCCTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp GGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACTCCCTGACTTCTTTTaGCCTCTTGGCTCTTTCCCT +
Preference number: 5 (lower is better)
Translates to: GCNRVTCKQTMFGIGLPVLPDFF*PLGSFP
Trigger: AGGGAAAGAGCCAAGAGGCAAAAAGAAGTCAGGGAG...TACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp GTAGTGGTCAATTGGTTAATTATGTCTCCCTACCCAGAGGTGTATGAAAGACTTTGCTCCAGCATCGCCTaGAACTCTGCCTCTTTCTGC +
Preference number: 5 (lower is better)
Translates to: VVVNWLIMSPYPEVYERLCSSIA*NSASFC
Trigger: GCAGAAAGAGGCAGAGTTCAAGGCGATGCTGGAGCA...AAGTCTTTCATACACCTCTGGGTAGGGAGACATAATTAACCAATTGACCACTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp TTTGGTTGGGTTGTTTTTGTTGGTAGTGGTCAATTGGTTAATTATGTCTCCCTATCCTCCTGCTGCTTCTaGAGCTGCTCCAGCATCGCC +
Preference number: 5 (lower is better)
Translates to: FGWVVFVGSGQLVNYVSLSSCCF*SCSSIA
Trigger: GGCGATGCTGGAGCAGCTCAAGAAGCAGCAGGAGGA...TAGGGAGACATAATTAACCAATTGACCACTACCAACAAAAACAACCCAACCAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp GGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTAACGGTCAGGTTTGGGTaGTTAATGAAGGACATGTGG +
Preference number: 5 (lower is better)
Translates to: GCNRVTCKQTMFGIGLPVTVRFG*LMKDMW
Trigger: CCACATGTCCTTCATTAACAACCCAAACCTGACCGT...TACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp TCAGGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAACGGTCAGGTTTGGGTaGTTAATGAAGGACATGTGG +
Preference number: 5 (lower is better)
Translates to: SGCNRVTCKQTMFGIGLPTVRFG*LMKDMW
Trigger: CCACATGTCCTTCATTAACAACCCAAACCTGACCGT...TGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCCTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp TGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGTCCTGTCTAACATCCTCTGTGTaGAGGTTCTCGAAATCAGAC +
Preference number: 5 (lower is better)
Translates to: WNSYHFSKYSEQCRAGSCLTSSV*RFSKSD
Trigger: GTCTGATTTCGAGAACCTCAACACAGAGGATGTTAG...ACAGGACCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp ACTTTTCTAAAGATCAGGTATCGTTTAGGGCAGCATCAGGCTCCATGCACTCACCCGACGTTGTCGAAGTaGATCTTGACGTTCTTCCAT +
Preference number: 5 (lower is better)
Translates to: TFLKIRYRLGQHQAPCTHPTLSK*ILTFFH
Trigger: ATGGAAGAACGTCAAGATCAACTTCGACAACGTCGG...GTGAGTGCATGGAGCCTGATGCTGCCCTAAACGATACCTGATCTTTAGAAAAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CAA 90 bp TCAGGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCACCGACGTTGTCGAAGTaGATCTTGACGTTCTTCCAT +
Preference number: 5 (lower is better)
Translates to: SGCNRVTCKQTMFGIGLPPTLSK*ILTFFH
Trigger: ATGGAAGAACGTCAAGATCAACTTCGACAACGTCGG...TGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCCTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp CCTCTTCCTCAAGTCCAAAGAATACTTTGCCCTTCCCTGGCGCCTTTGTCTCTGATCAAAGACAATCCCTaGGATTTTGTTCAAAGGTCG +
Preference number: 5 (lower is better)
Translates to: PLPQVQRILCPSLAPLSLIKDNP*DFVQRS
Trigger: CGACCTTTGAACAAAATCCAAGGGATTGTCTTTGAT...CAGAGACAAAGGCGCCAGGGAAGGGCAAAGTATTCTTTGGACTTGAGGAAGAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CAA 90 bp TCAGGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGATGTCGAAGGCTTGTaGCGTGACGAAATCAAAGAC +
Preference number: 5 (lower is better)
Translates to: SGCNRVTCKQTMFGIGLPDVEGL*RDEIKD
Trigger: GTCTTTGATTTCGTCACGCAACAAGCCTTCGACATC...TGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCCTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp TTTGGTTGGGTTGTTTTTGTTGGTAGTGGTCAATTGGTTAATTATGTCTCCCTATCGATGGTGTTGGGCTaGGGTACTCGGAGCGGATGC +
Preference number: 5 (lower is better)
Translates to: FGWVVFVGSGQLVNYVSLSMVLG*GTRSGC
Trigger: GCATCCGCTCCGAGTACCCAAGCCCAACACCATCGA...TAGGGAGACATAATTAACCAATTGACCACTACCAACAAAAACAACCCAACCAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp GGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACCATTCTCCAGCTTGTaGGAAGTGATCTTTCTGCAG +
Preference number: 5 (lower is better)
Translates to: GCNRVTCKQTMFGIGLPVPFSSL*EVIFLQ
Trigger: CTGCAGAAAGATCACTTCCAACAAGCTGGAGAATGG...TACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp TCAGGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCACCTCCATTCTCCAGCTaGTTGGAAGTGATCTTTCTG +
Preference number: 5 (lower is better)
Translates to: SGCNRVTCKQTMFGIGLPPPFSS*LEVIFL
Trigger: CAGAAAGATCACTTCCAACAAGCTGGAGAATGGAGG...TGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCCTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp TGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGCCTCCATTCTCCAGCTaGTTGGAAGTGATCTTTCTG +
Preference number: 5 (lower is better)
Translates to: CNRVTCKQTMFGIGLPVQPPFSS*LEVIFL
Trigger: CAGAAAGATCACTTCCAACAAGCTGGAGAATGGAGG...CTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp GTAGTGGTCAATTGGTTAATTATGTCTCCCTACCCAGAGGTGTATGAAAGACTTAGGTCACTGTTTGGCTaGGGCTTGCTGTCTTCATCG +
Preference number: 5 (lower is better)
Translates to: VVVNWLIMSPYPEVYERLRSLFG*GLLSSS
Trigger: CGATGAAGACAGCAAGCCCAAGCCAAACAGTGACCT...AAGTCTTTCATACACCTCTGGGTAGGGAGACATAATTAACCAATTGACCACTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp GTAGTGGTCAATTGGTTAATTATGTCTCCCTACCCAGAGGTGTATGAAAGACTTACCGATATCTGCAGGTaGTTCATTTCCCCGTCGTCG +
Preference number: 5 (lower is better)
Translates to: VVVNWLIMSPYPEVYERLTDICR*FISPSS
Trigger: CGACGACGGGGAAATGAACAACCTGCAGATATCGGT...AAGTCTTTCATACACCTCTGGGTAGGGAGACATAATTAACCAATTGACCACTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp GTAGTGGTCAATTGGTTAATTATGTCTCCCTACCCAGAGGTGTATGAAAGACTTTTCATCAGCCTCCCGTaGCTTGAAGTGTGCCTGCAT +
Preference number: 5 (lower is better)
Translates to: VVVNWLIMSPYPEVYERLFISLP*LEVCLH
Trigger: ATGCAGGCACACTTCAAGCAACGGGAGGCTGATGAA...AAGTCTTTCATACACCTCTGGGTAGGGAGACATAATTAACCAATTGACCACTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp GTAGTGGTCAATTGGTTAATTATGTCTCCCTACCCAGAGGTGTATGAAAGACTTTGGTTGGCGATGCAGTaGGCCTTCTTCTCATACAGC +
Preference number: 5 (lower is better)
Translates to: VVVNWLIMSPYPEVYERLWLAMQ*AFFSYS
Trigger: GCTGTATGAGAAGAAGGCCAACTGCATCGCCAACCA...AAGTCTTTCATACACCTCTGGGTAGGGAGACATAATTAACCAATTGACCACTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp TCAGGATGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCACTAACATCCTCTGTGTaGAGGTTCTCGAAATCAGAC +
Preference number: 5 (lower is better)
Translates to: SGCNRVTCKQTMFGIGLPLTSSV*RFSKSD
Trigger: GTCTGATTTCGAGAACCTCAACACAGAGGATGTTAG...TGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCATCCTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp GTAGTGGTCAATTGGTTAATTATGTCTCCCTACCCAGAGGTGTATGAAAGACTTCGGATCTCTGTGTTGTaGCCCTCCATGAGCTTCTCA +
Preference number: 5 (lower is better)
Translates to: VVVNWLIMSPYPEVYERLRISVL*PSMSFS
Trigger: TGAGAAGCTCATGGAGGGCAACAACACAGAGATCCG...AAGTCTTTCATACACCTCTGGGTAGGGAGACATAATTAACCAATTGACCACTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp GCTACAATACATAGCACTTTTATCTCTACCCCAGGGTCAGTTCTCCAGGATGAAGATGTCGAAGGCTTGTaGCGTGACGAAATCAAAGAC +
Preference number: 5 (lower is better)
Translates to: ATIHSTFISTPGSVLQDEDVEGL*RDEIKD
Trigger: GTCTTTGATTTCGTCACGCAACAAGCCTTCGACATC...TTCATCCTGGAGAACTGACCCTGGGGTAGAGATAAAAGTGCTATGTATTGTAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CAA 90 bp TTTGGTTGGGTTGTTTTTGTTGGTAGTGGTCAATTGGTTAATTATGTCTCCCTAGACACTTTGGAAGGATaGGACGCCACGAACCGCTCC +
Preference number: 5 (lower is better)
Translates to: FGWVVFVGSGQLVNYVSLDTLEG*DATNRS
Trigger: GGAGCGGTTCGTGGCGTCCAATCCTTCCAAAGTGTC...TAGGGAGACATAATTAACCAATTGACCACTACCAACAAAAACAACCCAACCAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp CCGGTATGGAACTCTTACCATTTCTCCAAATACAGTGAACAGTGCAGGGCTGGGAAGTTTGTTTTATTGTaGATATACTCCTCCCAGTCG +
Preference number: 5 (lower is better)
Translates to: PVWNSYHFSKYSEQCRAGKFVLL*IYSSQS
Trigger: CGACTGGGAGGAGTATATCAACAATAAAACAAACTT...CCCAGCCCTGCACTGTTCACTGTATTTGGAGAAATGGTAAGAGTTCCATACCGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp GTAGTGGTCAATTGGTTAATTATGTCTCCCTACCCAGAGGTGTATGAAAGACTTCTGAAGATGCTGCTTTaGCTGTTGTGTCGGGAAAGG +
Preference number: 5 (lower is better)
Translates to: VVVNWLIMSPYPEVYERLLKMLL*LLCRER
Trigger: CCTTTCCCGACACAACAGCAAAAGCAGCATCTTCAG...AAGTCTTTCATACACCTCTGGGTAGGGAGACATAATTAACCAATTGACCACTAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp TTTGGTTGGGTTGTTTTTGTTGGTAGTGGTCAATTGGTTAATTATGTCTCCCTAAGGATCCACCACGACTaGCCTAGTCCTTCCTCGATG +
Preference number: 5 (lower is better)
Translates to: FGWVVFVGSGQLVNYVSLRIHHD*PSPSSM
Trigger: CATCGAGGAAGGACTAGGCAAGTCGTGGTGGATCCT...TAGGGAGACATAATTAACCAATTGACCACTACCAACAAAAACAACCCAACCAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp CTCACTGACTGGCTGTGGTTTGTTCTATGCAAAACTAGTCAGGTGGACTGTGAGAAGTTTGTTTTATTGTaGATATACTCCTCCCAGTCG +
Preference number: 5 (lower is better)
Translates to: LTDWLWFVLCKTSQVDCEKFVLL*IYSSQS
Trigger: CGACTGGGAGGAGTATATCAACAATAAAACAAACTT...CTCACAGTCCACCTGACTAGTTTTGCATAGAACAAACCACAGCCAGTCAGTGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CAA 90 bp TTTGGTTGGGTTGTTTTTGTTGGTAGTGGTCAATTGGTTAATTATGTCTCCCTATTCATCAGCCTCCCGTaGCTTGAAGTGTGCCTGCAT +
Preference number: 5 (lower is better)
Translates to: FGWVVFVGSGQLVNYVSLFISLP*LEVCLH
Trigger: ATGCAGGCACACTTCAAGCAACGGGAGGCTGATGAA...TAGGGAGACATAATTAACCAATTGACCACTACCAACAAAAACAACCCAACCAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp TGCAACCGTGTCACGTGTAAGCAGACTATGTTTGGTATAGGTCTTCCAGTACAGATCAAAGACAATCCCTaGGATTTTGTTCAAAGGTCG +
Preference number: 5 (lower is better)
Translates to: CNRVTCKQTMFGIGLPVQIKDNP*DFVQRS
Trigger: CGACCTTTGAACAAAATCCAAGGGATTGTCTTTGAT...CTGTACTGGAAGACCTATACCAAACATAGTCTGCTTACACGTGACACGGTTGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp GTAGTGGTCAATTGGTTAATTATGTCTCCCTACCCAGAGGTGTATGAAAGACTTCCATTCTCCAGCTTGTaGGAAGTGATCTTTCTGCAG +
Preference number: 5 (lower is better)
Translates to: VVVNWLIMSPYPEVYERLPFSSL*EVIFLQ
Trigger: CTGCAGAAAGATCACTTCCAACAAGCTGGAGAATGG...AAGTCTTTCATACACCTCTGGGTAGGGAGACATAATTAACCAATTGACCACTAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp AATCATAACCATGAACAAGGCAGAAGTAAGGCCAGACCAGCTAGGTTGGTTGAAATCAAAGACAATCCCTaGGATTTTGTTCAAAGGTCG +
Preference number: 5 (lower is better)
Translates to: NHNHEQGRSKARPARLVEIKDNP*DFVQRS
Trigger: CGACCTTTGAACAAAATCCAAGGGATTGTCTTTGAT...TTCAACCAACCTAGCTGGTCTGGCCTTACTTCTGCCTTGTTCATGGTTATGATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CAA 90 bp TTTACAGTGACATTAATAGTACAAGCCATTCGGGGCCAGAGTCTCCCCATGTATAAGTTTGTTTTATTGTaGATATACTCCTCCCAGTCG +
Preference number: 5 (lower is better)
Translates to: FTVTLIVQAIRGQSLPMYKFVLL*IYSSQS
Trigger: CGACTGGGAGGAGTATATCAACAATAAAACAAACTT...ATACATGGGGAGACTCTGGCCCCGAATGGCTTGTACTATTAATGTCACTGTAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
CDS-3UTR CAA 90 bp TTTGGTTGGGTTGTTTTTGTTGGTAGTGGTCAATTGGTTAATTATGTCTCCCTACCATTCTCCAGCTTGTaGGAAGTGATCTTTCTGCAG +
Preference number: 5 (lower is better)
Translates to: FGWVVFVGSGQLVNYVSLPFSSL*EVIFLQ
Trigger: CTGCAGAAAGATCACTTCCAACAAGCTGGAGAATGG...TAGGGAGACATAATTAACCAATTGACCACTACCAACAAAAACAACCCAACCAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp TTTGGTTGGGTTGTTTTTGTTGGTAGTGGTCAATTGGTTAATTATGTCTCCCTACCTCCATTCTCCAGCTaGTTGGAAGTGATCTTTCTG +
Preference number: 5 (lower is better)
Translates to: FGWVVFVGSGQLVNYVSLPPFSS*LEVIFL
Trigger: CAGAAAGATCACTTCCAACAAGCTGGAGAATGGAGG...TAGGGAGACATAATTAACCAATTGACCACTACCAACAAAAACAACCCAACCAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp TTTGGTTGGGTTGTTTTTGTTGGTAGTGGTCAATTGGTTAATTATGTCTCCCTACTAACATCCTCTGTGTaGAGGTTCTCGAAATCAGAC +
Preference number: 5 (lower is better)
Translates to: FGWVVFVGSGQLVNYVSLLTSSV*RFSKSD
Trigger: GTCTGATTTCGAGAACCTCAACACAGAGGATGTTAG...TAGGGAGACATAATTAACCAATTGACCACTACCAACAAAAACAACCCAACCAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp GTAGTGGTCAATTGGTTAATTATGTCTCCCTACCCAGAGGTGTATGAAAGACTTATCAAAGACAATCCCTaGGATTTTGTTCAAAGGTCG +
Preference number: 5 (lower is better)
Translates to: VVVNWLIMSPYPEVYERLIKDNP*DFVQRS
Trigger: CGACCTTTGAACAAAATCCAAGGGATTGTCTTTGAT...AAGTCTTTCATACACCTCTGGGTAGGGAGACATAATTAACCAATTGACCACTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp GTAGTGGTCAATTGGTTAATTATGTCTCCCTACCCAGAGGTGTATGAAAGACTTAAGTTTGTTTTATTGTaGATATACTCCTCCCAGTCG +
Preference number: 5 (lower is better)
Translates to: VVVNWLIMSPYPEVYERLKFVLL*IYSSQS
Trigger: CGACTGGGAGGAGTATATCAACAATAAAACAAACTT...AAGTCTTTCATACACCTCTGGGTAGGGAGACATAATTAACCAATTGACCACTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp TTTGGTTGGGTTGTTTTTGTTGGTAGTGGTCAATTGGTTAATTATGTCTCCCTAATCAAAGACAATCCCTaGGATTTTGTTCAAAGGTCG +
Preference number: 5 (lower is better)
Translates to: FGWVVFVGSGQLVNYVSLIKDNP*DFVQRS
Trigger: CGACCTTTGAACAAAATCCAAGGGATTGTCTTTGAT...TAGGGAGACATAATTAACCAATTGACCACTACCAACAAAAACAACCCAACCAAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS-3UTR CAA 90 bp TTTGGTTGGGTTGTTTTTGTTGGTAGTGGTCAATTGGTTAATTATGTCTCCCTAAAGTTTGTTTTATTGTaGATATACTCCTCCCAGTCG +
Preference number: 5 (lower is better)
Translates to: FGWVVFVGSGQLVNYVSLKFVLL*IYSSQS
Trigger: CGACTGGGAGGAGTATATCAACAATAAAACAAACTT...TAGGGAGACATAATTAACCAATTGACCACTACCAACAAAAACAACCCAACCAAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000082209.13
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000201549.4
CDS TCA 72 bp TGTAGCTGCTGCGGCGCTCGCGGGCGCGGATCGGGATaGAGAGCGAGTCGCGCCGGCCCTCACTTTCCTCCA +
Preference number: 6 (lower is better)
Translates to: CSCCGARGRGSG*RASRAGPHFPP
Trigger: TGGAGGAAAGTGAGGGCCGGCGCGACTCGCTCTTCATCCCGATCCGCGCCCGCGAGCGCCGCAGCAGCTACA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201518.4
ENSMUST00000201549.4
ENSMUST00000202702.2
CDS CAA 90 bp AGCCGCCCGATGTGCGAGCCAGGCCCGATGAGCGACACCACGCCATaGCAGTCCACGGTGCTGTTGCGTTTCACGCTGCGCCGCAGGCTG +
Preference number: 6 (lower is better)
Translates to: SRPMCEPGPMSDTTP*QSTVLLRFTLRRRL
Trigger: CAGCCTGCGGCGCAGCGTGAAACGCAACAGCACCGTGGACTGCAATGGCGTGGTGTCGCTCATCGGGCCTGGCTCGCACATCGGGCGGCT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201518.4
ENSMUST00000201549.4
ENSMUST00000202702.2
CDS GCA 72 bp CGCCATTGCAGTCCACGGTGCTGTTGCGTTTCACGCTaGGCCGCAGGCTGGGGAAGATGCGCGACGAGCGGC +
Preference number: 6 (lower is better)
Translates to: RHCSPRCCCVSR*AAGWGRCATSG
Trigger: GCCGCTCGTCGCGCATCTTCCCCAGCCTGCGGCGCAGCGTGAAACGCAACAGCACCGTGGACTGCAATGGCG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201518.4
ENSMUST00000201549.4
ENSMUST00000202702.2
CDS CCA 72 bp CCACGGTGCTGTTGCGTTTCACGCTGCGCCGCAGGCTaGGGAAGATGCGCGACGAGCGGCTGCACTGGCTGT +
Preference number: 6 (lower is better)
Translates to: PRCCCVSRCAAG*GRCATSGCTGC
Trigger: ACAGCCAGTGCAGCCGCTCGTCGCGCATCTTCCCCAGCCTGCGGCGCAGCGTGAAACGCAACAGCACCGTGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201518.4
ENSMUST00000201549.4
ENSMUST00000202702.2
CDS CAA 72 bp GGCAGGTCCATGGCGATGAGCTCGATGGTGTTGGGCTaGGGTACTCGGAGCGGATGCTCCAGGGCGTCGGCA +
Preference number: 6 (lower is better)
Translates to: GRSMAMSSMVLG*GTRSGCSRASA
Trigger: TGCCGACGCCCTGGAGCATCCGCTCCGAGTACCCAAGCCCAACACCATCGAGCTCATCGCCATGGACCTGCC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201549.4
CDS CAA 90 bp TCGTCCTCCCGGTGGCTGCCATCCGCCTTGGGTGGTTTCTTGAGCTaGCTCTCGGCGATGCGCCTCTCGATGTTTGCCAGCGACTCGGGG +
Preference number: 6 (lower is better)
Translates to: SSSRWLPSALGGFLS*LSAMRLSMFASDSG
Trigger: CCCCGAGTCGCTGGCAAACATCGAGAGGCGCATCGCCGAGAGCAAGCTCAAGAAACCACCCAAGGCGGATGGCAGCCACCGGGAGGACGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000082209.13
ENSMUST00000096198.10
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200959.2
ENSMUST00000200963.4
ENSMUST00000201518.4
ENSMUST00000201549.4
CDS CAA 72 bp CTCTCGATGTTTGCCAGCGACTCGGGGGTGAAAGGCTaGAAACTGTCGGGGCCTGGTGGTGCGAGCAGCCGC +
Preference number: 6 (lower is better)
Translates to: LSMFASDSGVKG*KLSGPGGASSR
Trigger: GCGGCTGCTCGCACCACCAGGCCCCGACAGTTTCAAGCCTTTCACCCCCGAGTCGCTGGCAAACATCGAGAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 9 transcripts:
ENSMUST00000082209.13
ENSMUST00000096198.10
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200959.2
ENSMUST00000200963.4
ENSMUST00000201518.4
ENSMUST00000201549.4
CDS CAA 72 bp ATGTGCGAGCCAGGCCCGATGAGCGACACCACGCCATaGCAGTCCACGGTGCTGTTGCGTTTCACGCTGCGC +
Preference number: 6 (lower is better)
Translates to: MCEPGPMSDTTP*QSTVLLRFTLR
Trigger: GCGCAGCGTGAAACGCAACAGCACCGTGGACTGCAATGGCGTGGTGTCGCTCATCGGGCCTGGCTCGCACAT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201518.4
ENSMUST00000201549.4
ENSMUST00000202702.2
CDS TCA 72 bp CCTCCCGGTGGCTGCCATCCGCCTTGGGTGGTTTCTTaGGCTTGCTCTCGGCGATGCGCCTCTCGATGTTTG +
Preference number: 6 (lower is better)
Translates to: PPGGCHPPWVVS*ACSRRCASRCL
Trigger: CAAACATCGAGAGGCGCATCGCCGAGAGCAAGCTCAAGAAACCACCCAAGGCGGATGGCAGCCACCGGGAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000082209.13
ENSMUST00000096198.10
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200959.2
ENSMUST00000200963.4
ENSMUST00000201518.4
ENSMUST00000201549.4
CDS GCA 72 bp AGCTCGATGGTGTTGGGCTTGGGTACTCGGAGCGGATaGTCCAGGGCGTCGGCAAAGTCGGCCAGCTTACAG +
Preference number: 6 (lower is better)
Translates to: SSMVLGLGTRSG*SRASAKSASLQ
Trigger: CTGTAAGCTGGCCGACTTTGCCGACGCCCTGGAGCATCCGCTCCGAGTACCCAAGCCCAACACCATCGAGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201549.4
CDS CCA 72 bp TTCATCGTCCTCCCGGTGGCTGCCATCCGCCTTGGGTaGTTTCTTGAGCTTGCTCTCGGCGATGCGCCTCTC +
Preference number: 6 (lower is better)
Translates to: FIVLPVAAIRLG*FLELALGDAPL
Trigger: GAGAGGCGCATCGCCGAGAGCAAGCTCAAGAAACCACCCAAGGCGGATGGCAGCCACCGGGAGGACGATGAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000082209.13
ENSMUST00000096198.10
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200959.2
ENSMUST00000200963.4
ENSMUST00000201518.4
ENSMUST00000201549.4
CDS CCA 72 bp GCTTTGTCACGCTGTCGTAAGAGGGGAGGGAGGCTGTaGACGGGGTGCTCTCCTTCTTCTCTCGGTGGGTGC +
Preference number: 6 (lower is better)
Translates to: ALSRCRKRGGRL*TGCSPSSLGGC
Trigger: GCACCCACCGAGAGAAGAAGGAGAGCACCCCGTCCACAGCCTCCCTCCCCTCTTACGACAGCGTGACAAAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201549.4
CDS CAA 72 bp CGGTGGCTGCCATCCGCCTTGGGTGGTTTCTTGAGCTaGCTCTCGGCGATGCGCCTCTCGATGTTTGCCAGC +
Preference number: 6 (lower is better)
Translates to: RWLPSALGGFLS*LSAMRLSMFAS
Trigger: GCTGGCAAACATCGAGAGGCGCATCGCCGAGAGCAAGCTCAAGAAACCACCCAAGGCGGATGGCAGCCACCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000082209.13
ENSMUST00000096198.10
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200959.2
ENSMUST00000200963.4
ENSMUST00000201518.4
ENSMUST00000201549.4
CDS CAA 72 bp CTGTCTTCATCGTCCTCCCGGTGGCTGCCATCCGCCTaGGGTGGTTTCTTGAGCTTGCTCTCGGCGATGCGC +
Preference number: 6 (lower is better)
Translates to: LSSSSSRWLPSA*GGFLSLLSAMR
Trigger: GCGCATCGCCGAGAGCAAGCTCAAGAAACCACCCAAGGCGGATGGCAGCCACCGGGAGGACGATGAAGACAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000082209.13
ENSMUST00000096198.10
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200959.2
ENSMUST00000200963.4
ENSMUST00000201518.4
ENSMUST00000201549.4
CDS CAA 90 bp TCTTCATCGTCCTCCCGGTGGCTGCCATCCGCCTTGGGTGGTTTCTaGAGCTTGCTCTCGGCGATGCGCCTCTCGATGTTTGCCAGCGAC +
Preference number: 6 (lower is better)
Translates to: SSSSSRWLPSALGGF*SLLSAMRLSMFASD
Trigger: GTCGCTGGCAAACATCGAGAGGCGCATCGCCGAGAGCAAGCTCAAGAAACCACCCAAGGCGGATGGCAGCCACCGGGAGGACGATGAAGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000082209.13
ENSMUST00000096198.10
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200959.2
ENSMUST00000200963.4
ENSMUST00000201518.4
ENSMUST00000201549.4
CDS CAA 90 bp TTGGGCTTGCTGTCTTCATCGTCCTCCCGGTGGCTGCCATCCGCCTaGGGTGGTTTCTTGAGCTTGCTCTCGGCGATGCGCCTCTCGATG +
Preference number: 6 (lower is better)
Translates to: LGLLSSSSSRWLPSA*GGFLSLLSAMRLSM
Trigger: CATCGAGAGGCGCATCGCCGAGAGCAAGCTCAAGAAACCACCCAAGGCGGATGGCAGCCACCGGGAGGACGATGAAGACAGCAAGCCCAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000082209.13
ENSMUST00000096198.10
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200959.2
ENSMUST00000200963.4
ENSMUST00000201518.4
ENSMUST00000201549.4
CDS CAA 90 bp GGGTCCCGGAACCGTCCAGGACCCCGAAAGCTGAAGATGCTGCTTTaGCTGTTGTGTCGGGAAAGGAAGGGCGAGCCTGGGATGCTGAGC +
Preference number: 6 (lower is better)
Translates to: GSRNRPGPRKLKMLL*LLCRERKGEPGMLS
Trigger: GCTCAGCATCCCAGGCTCGCCCTTCCTTTCCCGACACAACAGCAAAAGCAGCATCTTCAGCTTTCGGGGTCCTGGACGGTTCCGGGACCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201518.4
ENSMUST00000201549.4
ENSMUST00000202702.2
CDS CAA 90 bp GCCCAGGCCACGCCCTTCTTGATCCGGATCACCGATATCTGCAGGTaGTTCATTTCCCCGTCGTCGTCCGTGGCCGCCAGATTGTCTGCG +
Preference number: 6 (lower is better)
Translates to: AQATPFLIRITDICR*FISPSSSVAARLSA
Trigger: CGCAGACAATCTGGCGGCCACGGACGACGACGGGGAAATGAACAACCTGCAGATATCGGTGATCCGGATCAAGAAGGGCGTGGCCTGGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201549.4
CDS CAA 72 bp GGCAAACTCTTCCCCGCCTCCAGGTCACTGTTTGGCTaGGGCTTGCTGTCTTCATCGTCCTCCCGGTGGCTG +
Preference number: 6 (lower is better)
Translates to: GKLFPASRSLFG*GLLSSSSSRWL
Trigger: CAGCCACCGGGAGGACGATGAAGACAGCAAGCCCAAGCCAAACAGTGACCTGGAGGCGGGGAAGAGTTTGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000082209.13
ENSMUST00000096198.10
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200959.2
ENSMUST00000200963.4
ENSMUST00000201518.4
ENSMUST00000201549.4
CDS CAA 90 bp CGGAACCGTCCAGGACCCCGAAAGCTGAAGATGCTGCTTTTGCTGTaGTGTCGGGAAAGGAAGGGCGAGCCTGGGATGCTGAGCAGCGAC +
Preference number: 6 (lower is better)
Translates to: RNRPGPRKLKMLLLL*CRERKGEPGMLSSD
Trigger: GTCGCTGCTCAGCATCCCAGGCTCGCCCTTCCTTTCCCGACACAACAGCAAAAGCAGCATCTTCAGCTTTCGGGGTCCTGGACGGTTCCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201518.4
ENSMUST00000201549.4
ENSMUST00000202702.2
CDS TCA 72 bp GAACCGCAACCAGGCCTTGCGGGATGTCCCCGTAGATaGAAGGCAAACTCTTCCCCGCCTCCAGGTCACTGT +
Preference number: 6 (lower is better)
Translates to: EPQPGLAGCPRR*KANSSPPPGHC
Trigger: ACAGTGACCTGGAGGCGGGGAAGAGTTTGCCTTTCATCTACGGGGACATCCCGCAAGGCCTGGTTGCGGTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 9 transcripts:
ENSMUST00000082209.13
ENSMUST00000096198.10
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200959.2
ENSMUST00000200963.4
ENSMUST00000201518.4
ENSMUST00000201549.4
CDS GCA 72 bp CAGGCCACGCCCTTCTTGATCCGGATCACCGATATCTaGAGGTTGTTCATTTCCCCGTCGTCGTCCGTGGCC +
Preference number: 6 (lower is better)
Translates to: QATPFLIRITDI*RLFISPSSSVA
Trigger: GGCCACGGACGACGACGGGGAAATGAACAACCTGCAGATATCGGTGATCCGGATCAAGAAGGGCGTGGCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201549.4
CDS CAA 90 bp CACCACGACTTGCCTAGTCCTTCCTCGATGTTGACCTGGCAGCACTaGAACCTCTGGACACAACCCTCCGTGAAGCAGGCGTCTGGATCC +
Preference number: 6 (lower is better)
Translates to: HHDLPSPSSMLTWQH*NLWTQPSVKQASGS
Trigger: GGATCCAGACGCCTGCTTCACGGAGGGTTGTGTCCAGAGGTTCAAGTGCTGCCAGGTCAACATCGAGGAAGGACTAGGCAAGTCGTGGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201549.4
CDS CAA 90 bp GGGGTGCTCTCCTTCTTCTCTCGGTGGGTGCCTCCATTCTCCAGCTaGTTGGAAGTGATCTTTCTGCAGATGAAGCCCCGCCTAGCCAGG +
Preference number: 6 (lower is better)
Translates to: GVLSFFSRWVPPFSS*LEVIFLQMKPRLAR
Trigger: CCTGGCTAGGCGGGGCTTCATCTGCAGAAAGATCACTTCCAACAAGCTGGAGAATGGAGGCACCCACCGAGAGAAGAAGGAGAGCACCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201549.4
CDS GCA 72 bp CTTGAGCTTGCTCTCGGCGATGCGCCTCTCGATGTTTaGCAGCGACTCGGGGGTGAAAGGCTTGAAACTGTC +
Preference number: 6 (lower is better)
Translates to: LELALGDAPLDV*QRLGGERLETV
Trigger: GACAGTTTCAAGCCTTTCACCCCCGAGTCGCTGGCAAACATCGAGAGGCGCATCGCCGAGAGCAAGCTCAAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000082209.13
ENSMUST00000096198.10
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200959.2
ENSMUST00000200963.4
ENSMUST00000201518.4
ENSMUST00000201549.4
CDS CCA 72 bp GAAAGGCAAACTCTTCCCCGCCTCCAGGTCACTGTTTaGCTTGGGCTTGCTGTCTTCATCGTCCTCCCGGTG +
Preference number: 6 (lower is better)
Translates to: ERQTLPRLQVTV*LGLAVFIVLPV
Trigger: CACCGGGAGGACGATGAAGACAGCAAGCCCAAGCCAAACAGTGACCTGGAGGCGGGGAAGAGTTTGCCTTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000082209.13
ENSMUST00000096198.10
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200959.2
ENSMUST00000200963.4
ENSMUST00000201518.4
ENSMUST00000201549.4
CDS CCA 72 bp TCGGAGAGCCTACCCCATCTTCCCCTTCTTCTTCAATaGCATCTTCTGAGACGGTGCCCGCCGAAGTGGCCA +
Preference number: 6 (lower is better)
Translates to: SESLPHLPLLLQ*HLLRRCPPKWP
Trigger: TGGCCACTTCGGCGGGCACCGTCTCAGAAGATGCCATTGAAGAAGAAGGGGAAGATGGGGTAGGCTCTCCGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201518.4
ENSMUST00000201549.4
ENSMUST00000202702.2
CDS CCA 72 bp GAACCTCTGGACACAACCCTCCGTGAAGCAGGCGTCTaGATCCAAGTATTCCTCAGGCTGCTCCACTGGGAC +
Preference number: 6 (lower is better)
Translates to: EPLDTTLREAGV*IQVFLRLLHWD
Trigger: GTCCCAGTGGAGCAGCCTGAGGAATACTTGGATCCAGACGCCTGCTTCACGGAGGGTTGTGTCCAGAGGTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201549.4
CDS CAA 72 bp CCAGGACCCCGAAAGCTGAAGATGCTGCTTTTGCTGTaGTGTCGGGAAAGGAAGGGCGAGCCTGGGATGCTG +
Preference number: 6 (lower is better)
Translates to: PGPRKLKMLLLL*CRERKGEPGML
Trigger: CAGCATCCCAGGCTCGCCCTTCCTTTCCCGACACAACAGCAAAAGCAGCATCTTCAGCTTTCGGGGTCCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201518.4
ENSMUST00000201549.4
ENSMUST00000202702.2
CDS CAA 72 bp AACCGTCCAGGACCCCGAAAGCTGAAGATGCTGCTTTaGCTGTTGTGTCGGGAAAGGAAGGGCGAGCCTGGG +
Preference number: 6 (lower is better)
Translates to: NRPGPRKLKMLL*LLCRERKGEPG
Trigger: CCCAGGCTCGCCCTTCCTTTCCCGACACAACAGCAAAAGCAGCATCTTCAGCTTTCGGGGTCCTGGACGGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201518.4
ENSMUST00000201549.4
ENSMUST00000202702.2
CDS CAA 72 bp ACGCCCTTCTTGATCCGGATCACCGATATCTGCAGGTaGTTCATTTCCCCGTCGTCGTCCGTGGCCGCCAGA +
Preference number: 6 (lower is better)
Translates to: TPFLIRITDICR*FISPSSSVAAR
Trigger: TCTGGCGGCCACGGACGACGACGGGGAAATGAACAACCTGCAGATATCGGTGATCCGGATCAAGAAGGGCGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201549.4
CDS CAA 90 bp TCCCGTTGCTTGAAGTGTGCCTGCATGAAGGCATGCACCTTCACTTaGGCCCAGGCCACGCCCTTCTTGATCCGGATCACCGATATCTGC +
Preference number: 6 (lower is better)
Translates to: SRCLKCACMKACTFT*AQATPFLIRITDIC
Trigger: GCAGATATCGGTGATCCGGATCAAGAAGGGCGTGGCCTGGGCCAAAGTGAAGGTGCATGCCTTCATGCAGGCACACTTCAAGCAACGGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201549.4
CDS TCA 72 bp CCGGAAGGCCTTCCTTCTCATGCCATCTTCCGACTCTaGCTTAAACACCTTCTCGGGGTCCCCCTTCTCCTC +
Preference number: 6 (lower is better)
Translates to: PEGLPSHAIFRL*LKHLLGVPLLL
Trigger: GAGGAGAAGGGGGACCCCGAGAAGGTGTTTAAGTCAGAGTCGGAAGATGGCATGAGAAGGAAGGCCTTCCGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 8 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201518.4
ENSMUST00000201549.4
ENSMUST00000202702.2
CDS TCA 72 bp TTTGAAGACTCGGAGCAATCGGAAAGATCGCAGCACTaGGAGCCCCTCCACGTCTGCAAGGCCCAGCTCCAT +
Preference number: 6 (lower is better)
Translates to: FEDSEQSERSQH*EPLHVCKAQLH
Trigger: ATGGAGCTGGGCCTTGCAGACGTGGAGGGGCTCTCAGTGCTGCGATCTTTCCGATTGCTCCGAGTCTTCAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201549.4
CDS CCA 72 bp AGTCGCCGTTCCTGTGAATGTCCACGCCGGTGTGGTTaGCGATGCAGTTGGCCTTCTTCTCATACAGCTCGT +
Preference number: 6 (lower is better)
Translates to: SRRSCECPRRCG*RCSWPSSHTAR
Trigger: ACGAGCTGTATGAGAAGAAGGCCAACTGCATCGCCAACCACACCGGCGTGGACATTCACAGGAACGGCGACT
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201549.4
CDS CCA 72 bp CACCACGACTTGCCTAGTCCTTCCTCGATGTTGACCTaGCAGCACTTGAACCTCTGGACACAACCCTCCGTG +
Preference number: 6 (lower is better)
Translates to: HHDLPSPSSMLT*QHLNLWTQPSV
Trigger: CACGGAGGGTTGTGTCCAGAGGTTCAAGTGCTGCCAGGTCAACATCGAGGAAGGACTAGGCAAGTCGTGGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201549.4
CDS CAA 72 bp TTGCCTAGTCCTTCCTCGATGTTGACCTGGCAGCACTaGAACCTCTGGACACAACCCTCCGTGAAGCAGGCG +
Preference number: 6 (lower is better)
Translates to: LPSPSSMLTWQH*NLWTQPSVKQA
Trigger: CGCCTGCTTCACGGAGGGTTGTGTCCAGAGGTTCAAGTGCTGCCAGGTCAACATCGAGGAAGGACTAGGCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201549.4
CDS CAA 90 bp TGCATGAAGGCATGCACCTTCACTTTGGCCCAGGCCACGCCCTTCTaGATCCGGATCACCGATATCTGCAGGTTGTTCATTTCCCCGTCG +
Preference number: 6 (lower is better)
Translates to: CMKACTFTLAQATPF*IRITDICRLFISPS
Trigger: CGACGGGGAAATGAACAACCTGCAGATATCGGTGATCCGGATCAAGAAGGGCGTGGCCTGGGCCAAAGTGAAGGTGCATGCCTTCATGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201549.4
CDS CAA 90 bp GTTTTCCGCAGGATCCACCACGACTTGCCTAGTCCTTCCTCGATGTaGACCTGGCAGCACTTGAACCTCTGGACACAACCCTCCGTGAAG +
Preference number: 6 (lower is better)
Translates to: VFRRIHHDLPSPSSM*TWQHLNLWTQPSVK
Trigger: CTTCACGGAGGGTTGTGTCCAGAGGTTCAAGTGCTGCCAGGTCAACATCGAGGAAGGACTAGGCAAGTCGTGGTGGATCCTGCGGAAAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201549.4
CDS CAA 90 bp GTGCTCTCCTTCTTCTCTCGGTGGGTGCCTCCATTCTCCAGCTTGTaGGAAGTGATCTTTCTGCAGATGAAGCCCCGCCTAGCCAGGTGT +
Preference number: 6 (lower is better)
Translates to: VLSFFSRWVPPFSSL*EVIFLQMKPRLARC
Trigger: ACACCTGGCTAGGCGGGGCTTCATCTGCAGAAAGATCACTTCCAACAAGCTGGAGAATGGAGGCACCCACCGAGAGAAGAAGGAGAGCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201549.4
CDS TCA 72 bp CTTCGCGCTCTTGGAACTGAGTTTAGACAGCTCAGATaGGCTCCTCGGAGAGCCTACCCCATCTTCCCCTTC +
Preference number: 6 (lower is better)
Translates to: LRALGTEFRQLR*APRRAYPIFPF
Trigger: GAAGGGGAAGATGGGGTAGGCTCTCCGAGGAGCTCATCTGAGCTGTCTAAACTCAGTTCCAAGAGCGCGAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201518.4
ENSMUST00000201549.4
ENSMUST00000202702.2
CDS TCA 72 bp CAGGCTGCTCCACTGGGACTTCTTCCACCTCAGGCTTaGTGTCGATGGTACTCCCTTCTGAGGAGCTGGTAT +
Preference number: 6 (lower is better)
Translates to: QAAPLGLLPPQA*CRWYSLLRSWY
Trigger: ATACCAGCTCCTCAGAAGGGAGTACCATCGACATCAAGCCTGAGGTGGAAGAAGTCCCAGTGGAGCAGCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201549.4
CDS GCA 72 bp TTCACTTCATCAGCCTCCCGTTGCTTGAAGTGTGCCTaGATGAAGGCATGCACCTTCACTTTGGCCCAGGCC +
Preference number: 6 (lower is better)
Translates to: FTSSASRCLKCA*MKACTFTLAQA
Trigger: GGCCTGGGCCAAAGTGAAGGTGCATGCCTTCATGCAGGCACACTTCAAGCAACGGGAGGCTGATGAAGTGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201549.4
CDS GCA 72 bp GTGAAGCAGGCGTCTGGATCCAAGTATTCCTCAGGCTaGTCCACTGGGACTTCTTCCACCTCAGGCTTGATG +
Preference number: 6 (lower is better)
Translates to: VKQASGSKYSSG*STGTSSTSGLM
Trigger: CATCAAGCCTGAGGTGGAAGAAGTCCCAGTGGAGCAGCCTGAGGAATACTTGGATCCAGACGCCTGCTTCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201549.4
CDS CAA 72 bp CCCACAGCAATGGGCACCCGCACGGTCAGGTTTGGGTaGTTAATGAAGGACATGTGGTCCTCGTCGATGATG +
Preference number: 6 (lower is better)
Translates to: PTAMGTRTVRFG*LMKDMWSSSMM
Trigger: CATCATCGACGAGGACCACATGTCCTTCATTAACAACCCAAACCTGACCGTGCGGGTGCCCATTGCTGTGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201549.4
CDS CAA 72 bp CTCCCTTCTGAGGAGCTGGTATCGTCCAGTTTGTCTTaGCTGCCTTCGGGGTCTGACTCGCTGCTAACATCC +
Preference number: 6 (lower is better)
Translates to: LPSEELVSSSLS*LPSGSDSLLTS
Trigger: GGATGTTAGCAGCGAGTCAGACCCCGAAGGCAGCAAAGACAAACTGGACGATACCAGCTCCTCAGAAGGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201549.4
CDS CAA 72 bp TCAGGCTGCTCCACTGGGACTTCTTCCACCTCAGGCTaGATGTCGATGGTACTCCCTTCTGAGGAGCTGGTA +
Preference number: 6 (lower is better)
Translates to: SGCSTGTSSTSG*MSMVLPSEELV
Trigger: TACCAGCTCCTCAGAAGGGAGTACCATCGACATCAAGCCTGAGGTGGAAGAAGTCCCAGTGGAGCAGCCTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201549.4
CDS CAA 72 bp AGGATCCACCACGACTTGCCTAGTCCTTCCTCGATGTaGACCTGGCAGCACTTGAACCTCTGGACACAACCC +
Preference number: 6 (lower is better)
Translates to: RIHHDLPSPSSM*TWQHLNLWTQP
Trigger: GGGTTGTGTCCAGAGGTTCAAGTGCTGCCAGGTCAACATCGAGGAAGGACTAGGCAAGTCGTGGTGGATCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201549.4
CDS CAA 90 bp TCAGACTCGCCCACAGCAATGGGCACCCGCACGGTCAGGTTTGGGTaGTTAATGAAGGACATGTGGTCCTCGTCGATGATGTACTTCTCC +
Preference number: 6 (lower is better)
Translates to: SDSPTAMGTRTVRFG*LMKDMWSSSMMYFS
Trigger: GGAGAAGTACATCATCGACGAGGACCACATGTCCTTCATTAACAACCCAAACCTGACCGTGCGGGTGCCCATTGCTGTGGGCGAGTCTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201549.4
CDS TCA 72 bp GTGCCATTTCCATTTTTCTGGAAGTCGCCGTTCCTGTaGATGTCCACGCCGGTGTGGTTGGCGATGCAGTTG +
Preference number: 6 (lower is better)
Translates to: VPFPFFWKSPFL*MSTPVWLAMQL
Trigger: CAACTGCATCGCCAACCACACCGGCGTGGACATTCACAGGAACGGCGACTTCCAGAAAAATGGAAATGGCAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201549.4
CDS CAA 72 bp TCCTTCTTCTCTCGGTGGGTGCCTCCATTCTCCAGCTaGTTGGAAGTGATCTTTCTGCAGATGAAGCCCCGC +
Preference number: 6 (lower is better)
Translates to: SFFSRWVPPFSS*LEVIFLQMKPR
Trigger: GCGGGGCTTCATCTGCAGAAAGATCACTTCCAACAAGCTGGAGAATGGAGGCACCCACCGAGAGAAGAAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201549.4
CDS CAA 90 bp AAGTATTCCTCAGGCTGCTCCACTGGGACTTCTTCCACCTCAGGCTaGATGTCGATGGTACTCCCTTCTGAGGAGCTGGTATCGTCCAGT +
Preference number: 6 (lower is better)
Translates to: KYSSGCSTGTSSTSG*MSMVLPSEELVSSS
Trigger: ACTGGACGATACCAGCTCCTCAGAAGGGAGTACCATCGACATCAAGCCTGAGGTGGAAGAAGTCCCAGTGGAGCAGCCTGAGGAATACTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201549.4
CDS TCA 72 bp GGTATCGTCCAGTTTGTCTTTGCTGCCTTCGGGGTCTaGCTCGCTGCTAACATCCTCTGTGTTGAGGTTCTC +
Preference number: 6 (lower is better)
Translates to: GIVQFVFAAFGV*LAANILCVEVL
Trigger: GAGAACCTCAACACAGAGGATGTTAGCAGCGAGTCAGACCCCGAAGGCAGCAAAGACAAACTGGACGATACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201549.4
CDS GCA 72 bp AGGTTTCACTTCATCAGCCTCCCGTTGCTTGAAGTGTaGCTGCATGAAGGCATGCACCTTCACTTTGGCCCA +
Preference number: 6 (lower is better)
Translates to: RFHFISLPLLEV*LHEGMHLHFGP
Trigger: TGGGCCAAAGTGAAGGTGCATGCCTTCATGCAGGCACACTTCAAGCAACGGGAGGCTGATGAAGTGAAACCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201549.4
CDS CCA 72 bp GCTTTTGCTGTTGTGTCGGGAAAGGAAGGGCGAGCCTaGGATGCTGAGCAGCGACTGATTCATGATGGAAAA +
Preference number: 6 (lower is better)
Translates to: AFAVVSGKEGRA*DAEQRLIHDGK
Trigger: TTTTCCATCATGAATCAGTCGCTGCTCAGCATCCCAGGCTCGCCCTTCCTTTCCCGACACAACAGCAAAAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201518.4
ENSMUST00000201549.4
ENSMUST00000202702.2
CDS CCA 72 bp CGCACGGTCAGGTTTGGGTTGTTAATGAAGGACATGTaGTCCTCGTCGATGATGTACTTCTCCACGCTGCTG +
Preference number: 6 (lower is better)
Translates to: RTVRFGLLMKDM*SSSMMYFSTLL
Trigger: CAGCAGCGTGGAGAAGTACATCATCGACGAGGACCACATGTCCTTCATTAACAACCCAAACCTGACCGTGCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201549.4
CDS CAA 90 bp TCATACAGCTCGTCTAAAGGTTTCACTTCATCAGCCTCCCGTTGCTaGAAGTGTGCCTGCATGAAGGCATGCACCTTCACTTTGGCCCAG +
Preference number: 6 (lower is better)
Translates to: SYSSSKGFTSSASRC*KCACMKACTFTLAQ
Trigger: CTGGGCCAAAGTGAAGGTGCATGCCTTCATGCAGGCACACTTCAAGCAACGGGAGGCTGATGAAGTGAAACCTTTAGACGAGCTGTATGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201549.4
CDS TCA 72 bp CGAAGCCTCTGGTGCCGTTCTCCAGATAGCTCTCGTTaGAGTTTATGGGCCACACGACACACTTGTTTCGAA +
Preference number: 6 (lower is better)
Translates to: RSLWCRSPDSSR*SLWATRHTCFE
Trigger: TTCGAAACAAGTGTGTCGTGTGGCCCATAAACTTCAACGAGAGCTATCTGGAGAACGGCACCAGAGGCTTCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201518.4
ENSMUST00000201549.4
ENSMUST00000202702.2
CDS GCA 72 bp AGCTCGTCTAAAGGTTTCACTTCATCAGCCTCCCGTTaGTTGAAGTGTGCCTGCATGAAGGCATGCACCTTC +
Preference number: 6 (lower is better)
Translates to: SSSKGFTSSASR*LKCACMKACTF
Trigger: GAAGGTGCATGCCTTCATGCAGGCACACTTCAAGCAACGGGAGGCTGATGAAGTGAAACCTTTAGACGAGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201549.4
CDS GCA 72 bp ATGGGAGGAAGTAGGAGCGTGGCAAGACTGGTCTTGTaGACGAATTCGCTCACCTGGGATTACCGAAATAGT +
Preference number: 6 (lower is better)
Translates to: MGGSRSVARLVL*TNSLTWDYRNS
Trigger: ACTATTTCGGTAATCCCAGGTGAGCGAATTCGTGCACAAGACCAGTCTTGCCACGCTCCTACTTCCTCCCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201438.4
CDS CAA 72 bp TCGTCTAAAGGTTTCACTTCATCAGCCTCCCGTTGCTaGAAGTGTGCCTGCATGAAGGCATGCACCTTCACT +
Preference number: 6 (lower is better)
Translates to: SSKGFTSSASRC*KCACMKACTFT
Trigger: AGTGAAGGTGCATGCCTTCATGCAGGCACACTTCAAGCAACGGGAGGCTGATGAAGTGAAACCTTTAGACGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201549.4
CDS TCA 72 bp CGTTCTTCCATCGGATCTCTGTGTTGTTGCCCTCCATaGGCTTCTCACAGTCGGTTTTATTGTTCACCTCGT +
Preference number: 6 (lower is better)
Translates to: RSSIGSLCCCPP*ASHSRFYCSPR
Trigger: ACGAGGTGAACAATAAAACCGACTGTGAGAAGCTCATGGAGGGCAACAACACAGAGATCCGATGGAAGAACG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201549.4
CDS CAA 90 bp ATCTCTGTGTTGTTGCCCTCCATGAGCTTCTCACAGTCGGTTTTATaGTTCACCTCGTCGATTTCGAACCGGATTTCTGAAGTCTCGTTG +
Preference number: 6 (lower is better)
Translates to: ISVLLPSMSFSQSVL*FTSSISNRISEVSL
Trigger: CAACGAGACTTCAGAAATCCGGTTCGAAATCGACGAGGTGAACAATAAAACCGACTGTGAGAAGCTCATGGAGGGCAACAACACAGAGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201549.4
CDS CCA 72 bp ATTCATGATGGAAAATTTCCTCCCTATCCTATTGTCTaGCAGCCGGAAGGCCTTCCTTCTCATGCCATCTTC +
Preference number: 6 (lower is better)
Translates to: IHDGKFPPYPIV*QPEGLPSHAIF
Trigger: GAAGATGGCATGAGAAGGAAGGCCTTCCGGCTGCCAGACAATAGGATAGGGAGGAAATTTTCCATCATGAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201518.4
ENSMUST00000201549.4
ENSMUST00000202702.2
CDS TCA 72 bp TGCAGATGGTTATGGCTAAGTCTACGAAAGGGTCCATaGCGATCAGGTTCACAATCTCCTTCAGTTTTATCC +
Preference number: 6 (lower is better)
Translates to: CRWLWLSLRKGP*RSGSQSPSVLS
Trigger: GGATAAAACTGAAGGAGATTGTGAACCTGATCGTCATGGACCCTTTCGTAGACTTAGCCATAACCATCTGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201518.4
ENSMUST00000201549.4
CDS TCA 72 bp TTTATTGTTCACCTCGTCGATTTCGAACCGGATTTCTaGAGTCTCGTTGAAGCAGTAGTGGTATTTCCCAGC +
Preference number: 6 (lower is better)
Translates to: FIVHLVDFEPDF*SLVEAVVVFPS
Trigger: GCTGGGAAATACCACTACTGCTTCAACGAGACTTCAGAAATCCGGTTCGAAATCGACGAGGTGAACAATAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000082209.13
ENSMUST00000108908.6
ENSMUST00000108909.9
ENSMUST00000108910.10
ENSMUST00000200963.4
ENSMUST00000201549.4