RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SCN5A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000032511

Ensembl transcript IDs: ENSMUST00000065196.13, ENSMUST00000117911.8, ENSMUST00000120420.2

Found 650 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GAGGTGGCCTGTGAGGTGGGTGCCCCCAGCCGAGGGTGGCTCTGCTaGAGAGCTAGACTTGGGCAGCCAAGCCCCTGCCTGCTCAGGCTC +
Preference number: 1 (lower is better)
Translates to: EVACEVGAPSRGWLC*RARLGQPSPCLLRL
Trigger: GAGCCTGAGCAGGCAGGGGCTTGGCTGCCCAAGTCTAGCTCTCCAGCAGAGCCACCCTCGGCTGGGGGCACCCACCTCACAGGCCACCTC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
3UTR GCA 90 bp ACTGAGGTGGCCTGTGAGGTGGGTGCCCCCAGCCGAGGGTGGCTCTaGTGGAGAGCTAGACTTGGGCAGCCAAGCCCCTGCCTGCTCAGG +
Preference number: 1 (lower is better)
Translates to: TEVACEVGAPSRGWL*WRARLGQPSPCLLR
Trigger: CCTGAGCAGGCAGGGGCTTGGCTGCCCAAGTCTAGCTCTCCAGCAGAGCCACCCTCGGCTGGGGGCACCCACCTCACAGGCCACCTCAGT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
3UTR GCA 90 bp GGAGCCACCGACCAACCACATTTGCCTGAGGCGACCCTGGGTCCCTaGGGCCTATGTCCCGCCCCAGTGTGTGAAGTGTGCACAGGCACA +
Preference number: 1 (lower is better)
Translates to: GATDQPHLPEATLGP*GLCPAPVCEVCTGT
Trigger: TGTGCCTGTGCACACTTCACACACTGGGGCGGGACATAGGCCGCAGGGACCCAGGGTCGCCTCAGGCAAATGTGGTTGGTCGGTGGCTCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR GCA 90 bp AGGCAGAGACCCCAGAGGAGCCTGGGAAATGGAGACCGCTCCCTTTaGTGCCACAGCTGGACACAGTTCAGCGGCCCACGTGGGACAGCC +
Preference number: 1 (lower is better)
Translates to: RQRPQRSLGNGDRSL*CHSWTQFSGPRGTA
Trigger: GGCTGTCCCACGTGGGCCGCTGAACTGTGTCCAGCTGTGGCAGCAAAGGGAGCGGTCTCCATTTCCCAGGCTCCTCTGGGGTCTCTGCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR CCA 90 bp CGCACTCGCCCACTCGCGTGTGTGAGTGAAGTGCTTAGGCCTTCCTaGCTCCTCAGCCCAGGTGACAGGAACCACAACCCTCCCCTTGGG +
Preference number: 1 (lower is better)
Translates to: RTRPLACVSEVLRPS*LLSPGDRNHNPPLG
Trigger: CCCAAGGGGAGGGTTGTGGTTCCTGTCACCTGGGCTGAGGAGCCAGGAAGGCCTAAGCACTTCACTCACACACGCGAGTGGGCGAGTGCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR CCA 90 bp ACAGTTCAGCGGCCCACGTGGGACAGCCTTCTCCTCCCTTGGCCTTaGGACAGGGCCTGCCACATCTCAGAAGCAAGCTACGTGCCTGGC +
Preference number: 1 (lower is better)
Translates to: TVQRPTWDSLLLPWP*DRACHISEASYVPG
Trigger: GCCAGGCACGTAGCTTGCTTCTGAGATGTGGCAGGCCCTGTCCCAAGGCCAAGGGAGGAGAAGGCTGTCCCACGTGGGCCGCTGAACTGT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR CCA 90 bp CTGGACACAGTTCAGCGGCCCACGTGGGACAGCCTTCTCCTCCCTTaGCCTTGGGACAGGGCCTGCCACATCTCAGAAGCAAGCTACGTG +
Preference number: 1 (lower is better)
Translates to: LDTVQRPTWDSLLLP*PWDRACHISEASYV
Trigger: CACGTAGCTTGCTTCTGAGATGTGGCAGGCCCTGTCCCAAGGCCAAGGGAGGAGAAGGCTGTCCCACGTGGGCCGCTGAACTGTGTCCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR CCA 90 bp ACAGGGCCAGGCTACCCTCCCACTTCCACAGTGTCTGAAGACGGTTaGAGCCCCAGTGGGCATCTCCTTGACACACGGCCAGAGGCAGAG +
Preference number: 1 (lower is better)
Translates to: TGPGYPPTSTVSEDG*SPSGHLLDTRPEAE
Trigger: CTCTGCCTCTGGCCGTGTGTCAAGGAGATGCCCACTGGGGCTCCAACCGTCTTCAGACACTGTGGAAGTGGGAGGGTAGCCTGGCCCTGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR CCA 90 bp CTGGGCTGGGCCCAGATGCCACACTGTCTCCTCTCCCATGGGGGATaGATGGCTTGTCACCTTCCAGGTCACAGAACCAGGCCTGACCAC +
Preference number: 1 (lower is better)
Translates to: LGWAQMPHCLLSHGG*MACHLPGHRTRPDH
Trigger: GTGGTCAGGCCTGGTTCTGTGACCTGGAAGGTGACAAGCCATCCATCCCCCATGGGAGAGGAGACAGTGTGGCATCTGGGCCCAGCCCAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR CCA 90 bp TCAGACCCTGGGCTGGGCCCAGATGCCACACTGTCTCCTCTCCCATaGGGGATGGATGGCTTGTCACCTTCCAGGTCACAGAACCAGGCC +
Preference number: 1 (lower is better)
Translates to: SDPGLGPDATLSPLP*GMDGLSPSRSQNQA
Trigger: GGCCTGGTTCTGTGACCTGGAAGGTGACAAGCCATCCATCCCCCATGGGAGAGGAGACAGTGTGGCATCTGGGCCCAGCCCAGGGTCTGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR TCA 90 bp TGTGTGAAGTGTGCACAGGCACACGCACTCGCCCACTCGCGTGTGTaGGTGAAGTGCTTAGGCCTTCCTGGCTCCTCAGCCCAGGTGACA +
Preference number: 1 (lower is better)
Translates to: CVKCAQAHALAHSRV*VKCLGLPGSSAQVT
Trigger: TGTCACCTGGGCTGAGGAGCCAGGAAGGCCTAAGCACTTCACTCACACACGCGAGTGGGCGAGTGCGTGTGCCTGTGCACACTTCACACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR TCA 90 bp GGACAGGGCCTGCCACATCTCAGAAGCAAGCTACGTGCCTGGCTGTaGGCGAGGCTGCCTTCCTCGAGCCCTTGGGCCCCAACATTAATA +
Preference number: 1 (lower is better)
Translates to: GQGLPHLRSKLRAWL*ARLPSSSPWAPTLI
Trigger: TATTAATGTTGGGGCCCAAGGGCTCGAGGAAGGCAGCCTCGCTCACAGCCAGGCACGTAGCTTGCTTCTGAGATGTGGCAGGCCCTGTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR GCA 90 bp TCTCAGAAGACGCCTAGGATAGTCAGACCCTGGGCTGGGCCCAGATaGCACACTGTCTCCTCTCCCATGGGGGATGGATGGCTTGTCACC +
Preference number: 1 (lower is better)
Translates to: SQKTPRIVRPWAGPR*HTVSSPMGDGWLVT
Trigger: GGTGACAAGCCATCCATCCCCCATGGGAGAGGAGACAGTGTGGCATCTGGGCCCAGCCCAGGGTCTGACTATCCTAGGCGTCTTCTGAGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR CCA 90 bp TCCCTGAAAAAGCCTTCTCAGAAGACGCCTAGGATAGTCAGACCCTaGGCTGGGCCCAGATGCCACACTGTCTCCTCTCCCATGGGGGAT +
Preference number: 1 (lower is better)
Translates to: SLKKPSQKTPRIVRP*AGPRCHTVSSPMGD
Trigger: ATCCCCCATGGGAGAGGAGACAGTGTGGCATCTGGGCCCAGCCCAGGGTCTGACTATCCTAGGCGTCTTCTGAGAAGGCTTTTTCAGGGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
3UTR GCA 90 bp TGGCTCCTCAGCCCAGGTGACAGGAACCACAACCCTCCCCTTGGGTaGGAAGATTCCACGTTAGCTCTGAGAGCAGAGTTCTCCATTGAC +
Preference number: 1 (lower is better)
Translates to: WLLSPGDRNHNPPLG*EDSTLALRAEFSID
Trigger: GTCAATGGAGAACTCTGCTCTCAGAGCTAACGTGGAATCTTCGCACCCAAGGGGAGGGTTGTGGTTCCTGTCACCTGGGCTGAGGAGCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR TCA 90 bp TGGGTGCGAAGATTCCACGTTAGCTCTGAGAGCAGAGTTCTCCATTaGCACCTGCTCAGGGTTAGGAAGAGGCCGTGTGAACTGCTGCAG +
Preference number: 1 (lower is better)
Translates to: WVRRFHVSSESRVLH*HLLRVRKRPCELLQ
Trigger: CTGCAGCAGTTCACACGGCCTCTTCCTAACCCTGAGCAGGTGTCAATGGAGAACTCTGCTCTCAGAGCTAACGTGGAATCTTCGCACCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR GCA 90 bp GTGAGAAGTGCTCATTTACCTCAAACAACACCTGACATGTACGCATaGCCCTCCCTCCTTCCGTCTACCGGCTACTCTCTCCTCCCCTCT +
Preference number: 1 (lower is better)
Translates to: VRSAHLPQTTPDMYA*PSLLPSTGYSLLPS
Trigger: AGAGGGGAGGAGAGAGTAGCCGGTAGACGGAAGGAGGGAGGGGCATGCGTACATGTCAGGTGTTGTTTGAGGTAAATGAGCACTTCTCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
3UTR GCA 90 bp TTCTCCATTGACACCTGCTCAGGGTTAGGAAGAGGCCGTGTGAACTaGTGCAGATGTTCATGGAAAAAGATGTTCTTTGCTCGAGTAAAA +
Preference number: 1 (lower is better)
Translates to: FSIDTCSGLGRGRVN*CRCSWKKMFFARVK
Trigger: TTTTACTCGAGCAAAGAACATCTTTTTCCATGAACATCTGCAGCAGTTCACACGGCCTCTTCCTAACCCTGAGCAGGTGTCAATGGAGAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR-3UTR GCA 90 bp GCCCCCTCCTTCAGCACTGCCAGGAGCGTCCAGCCCTCCGACAGCTCGGCGAGGTGGGCTGGGCCCAGATaGCACACTGTCTCCTCTCCC +
Preference number: 2 (lower is better)
Translates to: APSFSTARSVQPSDSSARWAGPR*HTVSSP
Trigger: GGGAGAGGAGACAGTGTGGCATCTGGGCCCAGCCCA...CCTCGCCGAGCTGTCGGAGGGCTGGACGCTCCTGGCAGTGCTGAAGGAGGGGGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
3UTR-3UTR TCA 90 bp CAGGAGCGTCCAGCCCTCCGACAGCTCGGCGAGGTAGGTAGGAGCAGCCAGCCCGCTCCTCAGCCCAGGTaGCAGGAACCACAACCCTCC +
Preference number: 2 (lower is better)
Translates to: QERPALRQLGEVGRSSQPAPQPR*QEPQPS
Trigger: GGAGGGTTGTGGTTCCTGTCACCTGGGCTGAGGAGC...GGGCTGGCTGCTCCTACCTACCTCGCCGAGCTGTCGGAGGGCTGGACGCTCCTG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
3UTR-3UTR CCA 90 bp CAGGAGCGTCCAGCCCTCCGACAGCTCGGCGAGGTAGGTAGGAGCAGCCAGCCCAGTCAGACCCTGGGCTaGGCCCAGATGCCACACTGT +
Preference number: 2 (lower is better)
Translates to: QERPALRQLGEVGRSSQPSQTLG*AQMPHC
Trigger: ACAGTGTGGCATCTGGGCCCAGCCCAGGGTCTGACT...GGGCTGGCTGCTCCTACCTACCTCGCCGAGCTGTCGGAGGGCTGGACGCTCCTG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
3UTR-3UTR CCA 90 bp CCGCAGTGCCCCCTCCTTCAGCACTGCCAGGAGCGTCCAGCCCTCCGACAGCTCAGGATAGTCAGACCCTaGGCTGGGCCCAGATGCCAC +
Preference number: 2 (lower is better)
Translates to: PQCPLLQHCQERPALRQLRIVRP*AGPRCH
Trigger: GTGGCATCTGGGCCCAGCCCAGGGTCTGACTATCCT...GAGCTGTCGGAGGGCTGGACGCTCCTGGCAGTGCTGAAGGAGGGGGCACTGCGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
3UTR-3UTR CCA 90 bp CAGGAGCGTCCAGCCCTCCGACAGCTCGGCGAGGTAGGTAGGAGCAGCCAGCCCCTTTGCTGCCACAGCTaGACACAGTTCAGCGGCCCA +
Preference number: 2 (lower is better)
Translates to: QERPALRQLGEVGRSSQPLCCHS*TQFSGP
Trigger: TGGGCCGCTGAACTGTGTCCAGCTGTGGCAGCAAAG...GGGCTGGCTGCTCCTACCTACCTCGCCGAGCTGTCGGAGGGCTGGACGCTCCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
3UTR-3UTR CCA 90 bp CCGCAGTGCCCCCTCCTTCAGCACTGCCAGGAGCGTCCAGCCCTCCGACAGCTCCTTTGCTGCCACAGCTaGACACAGTTCAGCGGCCCA +
Preference number: 2 (lower is better)
Translates to: PQCPLLQHCQERPALRQLLCCHS*TQFSGP
Trigger: TGGGCCGCTGAACTGTGTCCAGCTGTGGCAGCAAAG...GAGCTGTCGGAGGGCTGGACGCTCCTGGCAGTGCTGAAGGAGGGGGCACTGCGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
3UTR-3UTR CCA 90 bp CCGCAGTGCCCCCTCCTTCAGCACTGCCAGGAGCGTCCAGCCCTCCGACAGCTCGTGTCTGAAGACGGTTaGAGCCCCAGTGGGCATCTC +
Preference number: 2 (lower is better)
Translates to: PQCPLLQHCQERPALRQLVSEDG*SPSGHL
Trigger: GAGATGCCCACTGGGGCTCCAACCGTCTTCAGACAC...GAGCTGTCGGAGGGCTGGACGCTCCTGGCAGTGCTGAAGGAGGGGGCACTGCGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
3UTR-3UTR GCA 90 bp TCCTCTCCCATGGGGGATGGATGGCTTGTCACCTTCCAGGTCACAGAACCAGGCGCGACCCTGGGTCCCTaGGGCCTATGTCCCGCCCCA +
Preference number: 2 (lower is better)
Translates to: SSPMGDGWLVTFQVTEPGATLGP*GLCPAP
Trigger: TGGGGCGGGACATAGGCCGCAGGGACCCAGGGTCGC...GCCTGGTTCTGTGACCTGGAAGGTGACAAGCCATCCATCCCCCATGGGAGAGGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR-3UTR GCA 90 bp CACCCTGTCTGCAGCCAGCCCGGCACCTGTCTTAAGGCTCCAAGGCCATCTGCACCGGCTACTAGGGTGTaGCAGGCCTCTACCAGCCAG +
Preference number: 2 (lower is better)
Translates to: HPVCSQPGTCLKAPRPSAPATRV*QASTSQ
Trigger: CTGGCTGGTAGAGGCCTGGCACACCCTAGTAGCCGG...TGCAGATGGCCTTGGAGCCTTAAGACAGGTGCCGGGCTGGCTGCAGACAGGGTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
3UTR-3UTR TCA 90 bp CAGAAGACGCCTAGGATAGTCAGACCCTGGGCTGGGCCCAGATGCCACACTGTCGCTCCTCAGCCCAGGTaGCAGGAACCACAACCCTCC +
Preference number: 2 (lower is better)
Translates to: QKTPRIVRPWAGPRCHTVAPQPR*QEPQPS
Trigger: GGAGGGTTGTGGTTCCTGTCACCTGGGCTGAGGAGC...GACAGTGTGGCATCTGGGCCCAGCCCAGGGTCTGACTATCCTAGGCGTCTTCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR-3UTR GCA 90 bp TCTGAAGACGGTTGGAGCCCCAGTGGGCATCTCCTTGACACACGGCCAGAGGCACCGGCTACTAGGGTGTaGCAGGCCTCTACCAGCCAG +
Preference number: 2 (lower is better)
Translates to: SEDGWSPSGHLLDTRPEAPATRV*QASTSQ
Trigger: CTGGCTGGTAGAGGCCTGGCACACCCTAGTAGCCGG...TGCCTCTGGCCGTGTGTCAAGGAGATGCCCACTGGGGCTCCAACCGTCTTCAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR-3UTR GCA 90 bp TCTAGAAAAGGAGGCCATGCTAAGCCAAGGACTCGGGACTCGATTGCCCCTCCCGGGCAGCCAAGCCCCTaGCTGCTCAGGCTCCACCAG +
Preference number: 2 (lower is better)
Translates to: SRKGGHAKPRTRDSIAPPGQPSP*LLRLHQ
Trigger: CTGGTGGAGCCTGAGCAGGCAGGGGCTTGGCTGCCC...GGGAGGGGCAATCGAGTCCCGAGTCCTTGGCTTAGCATGGCCTCCTTTTCTAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
3UTR-3UTR CCA 90 bp CGGCTACTAGGGTGTGCCAGGCCTCTACCAGCCAGGGTTGCTCTAGCCGCCTCTTGTGGTTCCTCCACCTaGAGGTTCCCCTGTCACCTC +
Preference number: 2 (lower is better)
Translates to: RLLGCARPLPARVALAASCGSST*RFPCHL
Trigger: GAGGTGACAGGGGAACCTCCAGGTGGAGGAACCACA...AGAGGCGGCTAGAGCAACCCTGGCTGGTAGAGGCCTGGCACACCCTAGTAGCCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR-3UTR GCA 90 bp CTGAAGACGGTTGGAGCCCCAGTGGGCATCTCCTTGACACACGGCCAGAGGCAGGACCGCTCCCTTTGCTaGCACAGCTGGACACAGTTC +
Preference number: 2 (lower is better)
Translates to: LKTVGAPVGISLTHGQRQDRSLC*HSWTQF
Trigger: GAACTGTGTCCAGCTGTGGCAGCAAAGGGAGCGGTC...CTGCCTCTGGCCGTGTGTCAAGGAGATGCCCACTGGGGCTCCAACCGTCTTCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR-3UTR TCA 90 bp TCTAGAAAAGGAGGCCATGCTAAGCCAAGGACTCGGGACTCGATTGCCCCTCCCCCATGCGGCCTGAAGTaGGTGCCAGGGAGGGACACA +
Preference number: 2 (lower is better)
Translates to: SRKGGHAKPRTRDSIAPPPCGLK*VPGRDT
Trigger: TGTGTCCCTCCCTGGCACTCACTTCAGGCCGCATGG...GGGAGGGGCAATCGAGTCCCGAGTCCTTGGCTTAGCATGGCCTCCTTTTCTAGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
3UTR-3UTR GCA 90 bp CCAGAGGAGCCTGGGAAATGGAGACCGCTCCCTTTGCTGCCACAGCTGGACACACAGAAGCAAGCTACGTaGCTGGCTGTGAGCGAGGCT +
Preference number: 2 (lower is better)
Translates to: PEEPGKWRPLPLLPQLDTQKQAT*LAVSEA
Trigger: AGCCTCGCTCACAGCCAGGCACGTAGCTTGCTTCTG...TGTGTCCAGCTGTGGCAGCAAAGGGAGCGGTCTCCATTTCCCAGGCTCCTCTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR-3UTR CCA 90 bp AGAGGAGCCTGGGAAATGGAGACCGCTCCCTTTGCTGCCACAGCTGGACACAGTGTGCTTAGGCCTTCCTaGCTCCTCAGCCCAGGTGAC +
Preference number: 2 (lower is better)
Translates to: RGAWEMETAPFAATAGHSVLRPS*LLSPGD
Trigger: GTCACCTGGGCTGAGGAGCCAGGAAGGCCTAAGCAC...ACTGTGTCCAGCTGTGGCAGCAAAGGGAGCGGTCTCCATTTCCCAGGCTCCTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR-3UTR TCA 90 bp TCTGAAGACGGTTGGAGCCCCAGTGGGCATCTCCTTGACACACGGCCAGAGGCAACCTCAAGCGAAGCCTaGCTGAGAACAGGAGACTGG +
Preference number: 2 (lower is better)
Translates to: SEDGWSPSGHLLDTRPEATSSEA*LRTGDW
Trigger: CCAGTCTCCTGTTCTCAGTCAGGCTTCGCTTGAGGT...TGCCTCTGGCCGTGTGTCAAGGAGATGCCCACTGGGGCTCCAACCGTCTTCAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR-3UTR CCA 90 bp TCCTCTCCCATGGGGGATGGATGGCTTGTCACCTTCCAGGTCACAGAACCAGGCTGTGGTTCCTCCACCTaGAGGTTCCCCTGTCACCTC +
Preference number: 2 (lower is better)
Translates to: SSPMGDGWLVTFQVTEPGCGSST*RFPCHL
Trigger: GAGGTGACAGGGGAACCTCCAGGTGGAGGAACCACA...GCCTGGTTCTGTGACCTGGAAGGTGACAAGCCATCCATCCCCCATGGGAGAGGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR CAA 90 bp CAAGCTACGTGCCTGGCTGTGAGCGAGGCTGCCTTCCTCGAGCCCTaGGGCCCCAACATTAATACTCTTACAGGAGAGGAAGGGAGACCA +
Preference number: 2 (lower is better)
Translates to: QATCLAVSEAAFLEP*GPNINTLTGEEGRP
Trigger: TGGTCTCCCTTCCTCTCCTGTAAGAGTATTAATGTTGGGGCCCAAGGGCTCGAGGAAGGCAGCCTCGCTCACAGCCAGGCACGTAGCTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR-3UTR TCA 90 bp CACCCTGTCTGCAGCCAGCCCGGCACCTGTCTTAAGGCTCCAAGGCCATCTGCAAAGAAACATAATACTTaGCTTGCCCGCAGTGCCCCC +
Preference number: 2 (lower is better)
Translates to: HPVCSQPGTCLKAPRPSAKKHNT*LARSAP
Trigger: GGGGGCACTGCGGGCAAGTCAAGTATTATGTTTCTT...TGCAGATGGCCTTGGAGCCTTAAGACAGGTGCCGGGCTGGCTGCAGACAGGGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
3UTR-3UTR GCA 90 bp ACTCGCCCACTCGCGTGTGTGAGTGAAGTGCTTAGGCCTTCCTGGCTCCTCAGCAACCCTCCCCTTGGGTaGGAAGATTCCACGTTAGCT +
Preference number: 2 (lower is better)
Translates to: TRPLACVSEVLRPSWLLSNPPLG*EDSTLA
Trigger: AGCTAACGTGGAATCTTCGCACCCAAGGGGAGGGTT...GCTGAGGAGCCAGGAAGGCCTAAGCACTTCACTCACACACGCGAGTGGGCGAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR-3UTR GCA 90 bp CTACTCTCTCCTCCCCTCTGTGCAGTTCTAGAAAAGGAGGCCATGCTAAGCCAACTCAGCCACCCTGTCTaGAGCCAGCCCGGCACCTGT +
Preference number: 2 (lower is better)
Translates to: LLSPPLCAVLEKEAMLSQLSHPV*SQPGTC
Trigger: ACAGGTGCCGGGCTGGCTGCAGACAGGGTGGCTGAG...TTGGCTTAGCATGGCCTCCTTTTCTAGAACTGCACAGAGGGGAGGAGAGAGTAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
3UTR-3UTR TCA 90 bp TCCTCTCCCATGGGGGATGGATGGCTTGTCACCTTCCAGGTCACAGAACCAGGCAACAGGGGCACAGAGTaGGTTCACAGGAAGAAACCC +
Preference number: 2 (lower is better)
Translates to: SSPMGDGWLVTFQVTEPGNRGTE*VHRKKP
Trigger: GGGTTTCTTCCTGTGAACTCACTCTGTGCCCCTGTT...GCCTGGTTCTGTGACCTGGAAGGTGACAAGCCATCCATCCCCCATGGGAGAGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR-3UTR GCA 90 bp CACCCTGTCTGCAGCCAGCCCGGCACCTGTCTTAAGGCTCCAAGGCCATCTGCAGGCCGTGTGAACTGCTaGAGATGTTCATGGAAAAAG +
Preference number: 2 (lower is better)
Translates to: HPVCSQPGTCLKAPRPSAGRVNC*RCSWKK
Trigger: CTTTTTCCATGAACATCTGCAGCAGTTCACACGGCC...TGCAGATGGCCTTGGAGCCTTAAGACAGGTGCCGGGCTGGCTGCAGACAGGGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
3UTR-3UTR CCA 90 bp TCTGAAGACGGTTGGAGCCCCAGTGGGCATCTCCTTGACACACGGCCAGAGGCACTGAGAACAGGAGACTaGAATCCTGTGGACAACAGG +
Preference number: 2 (lower is better)
Translates to: SEDGWSPSGHLLDTRPEALRTGD*NPVDNR
Trigger: CCTGTTGTCCACAGGATTCCAGTCTCCTGTTCTCAG...TGCCTCTGGCCGTGTGTCAAGGAGATGCCCACTGGGGCTCCAACCGTCTTCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR-3UTR GCA 90 bp CTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTTCAATTTTCCGGCTACTAGGGTGTaGCAGGCCTCTACCAGCCAG +
Preference number: 2 (lower is better)
Translates to: LLQERKGDQGSSLEAFNFPATRV*QASTSQ
Trigger: CTGGCTGGTAGAGGCCTGGCACACCCTAGTAGCCGG...AAAATTGAAAGCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR-3UTR CCA 90 bp CACAGAACTCTGCCGTGTGGTTCCTCCACCTGGAGGTTCCCCTGTCACCTCCAGGGCCTTAGCCGACACTaGTTTCAACTGCTTAAGGTT +
Preference number: 2 (lower is better)
Translates to: HRTLPCGSSTWRFPCHLQGLSRH*FQLLKV
Trigger: AACCTTAAGCAGTTGAAACCAGTGTCGGCTAAGGCC...CTGGAGGTGACAGGGGAACCTCCAGGTGGAGGAACCACACGGCAGAGTTCTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR-3UTR CCA 90 bp ACTCGCCCACTCGCGTGTGTGAGTGAAGTGCTTAGGCCTTCCTGGCTCCTCAGCGGCCTTAGCCGACACTaGTTTCAACTGCTTAAGGTT +
Preference number: 2 (lower is better)
Translates to: TRPLACVSEVLRPSWLLSGLSRH*FQLLKV
Trigger: AACCTTAAGCAGTTGAAACCAGTGTCGGCTAAGGCC...GCTGAGGAGCCAGGAAGGCCTAAGCACTTCACTCACACACGCGAGTGGGCGAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR-3UTR TCA 90 bp ATTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTTGCTCCTCAGCCCAGGTaGCAGGAACCACAACCCTCC +
Preference number: 2 (lower is better)
Translates to: INTLTGEEGRPGQLSGSFAPQPR*QEPQPS
Trigger: GGAGGGTTGTGGTTCCTGTCACCTGGGCTGAGGAGC...AAAGCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR-3UTR TCA 90 bp CCCTTGGGCCCCAACATTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGAACAGGGGCACAGAGTaGGTTCACAGGAAGAAACCC +
Preference number: 2 (lower is better)
Translates to: PLGPNINTLTGEEGRPGQNRGTE*VHRKKP
Trigger: GGGTTTCTTCCTGTGAACTCACTCTGTGCCCCTGTT...CTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAATGTTGGGGCCCAAGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR-3UTR GCA 90 bp CCCTTGGGCCCCAACATTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGAACCCTCCCCTTGGGTaGGAAGATTCCACGTTAGCT +
Preference number: 2 (lower is better)
Translates to: PLGPNINTLTGEEGRPGQNPPLG*EDSTLA
Trigger: AGCTAACGTGGAATCTTCGCACCCAAGGGGAGGGTT...CTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAATGTTGGGGCCCAAGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR-3UTR GCA 90 bp CTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTTCAATTTTCCAGTGTGTGAAGTGTaGACAGGCACACGCACTCGC +
Preference number: 2 (lower is better)
Translates to: LLQERKGDQGSSLEAFNFPVCEV*TGTRTR
Trigger: GCGAGTGCGTGTGCCTGTGCACACTTCACACACTGG...AAAATTGAAAGCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR-3UTR CCA 90 bp CAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTTCAATTTTTATAGCTGTGGTTCCTCCACCTaGAGGTTCCCCTGTCACCTC +
Preference number: 2 (lower is better)
Translates to: QERKGDQGSSLEAFNFYSCGSST*RFPCHL
Trigger: GAGGTGACAGGGGAACCTCCAGGTGGAGGAACCACA...GCTATAAAAATTGAAAGCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR-3UTR CCA 90 bp CCTCTCCCATGGGGGATGGATGGCTTGTCACCTTCCAGGTCACAGAACCAGGCCTGCTGCAGATGTTCATaGAAAAAGATGTTCTTTGCT +
Preference number: 2 (lower is better)
Translates to: PLPWGMDGLSPSRSQNQACCRCS*KKMFFA
Trigger: AGCAAAGAACATCTTTTTCCATGAACATCTGCAGCA...GGCCTGGTTCTGTGACCTGGAAGGTGACAAGCCATCCATCCCCCATGGGAGAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR-3UTR CCA 90 bp TTCTCCTCCCTTGGCCTTGGGACAGGGCCTGCCACATCTCAGAAGCAAGCTACGACCAGGGCAGCTCTCTaGAAGCTTTCAATTTTTATA +
Preference number: 2 (lower is better)
Translates to: FSSLGLGTGPATSQKQATTRAAL*KLSIFI
Trigger: TATAAAAATTGAAAGCTTCCAGAGAGCTGCCCTGGT...CGTAGCTTGCTTCTGAGATGTGGCAGGCCCTGTCCCAAGGCCAAGGGAGGAGAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR-3UTR GCA 90 bp CAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTTCAATTTTTATAGCTTCTCCATTGACACCTaGTCAGGGTTAGGAAGAGGC +
Preference number: 2 (lower is better)
Translates to: QERKGDQGSSLEAFNFYSFSIDT*SGLGRG
Trigger: GCCTCTTCCTAACCCTGAGCAGGTGTCAATGGAGAA...GCTATAAAAATTGAAAGCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR-3UTR CCA 90 bp CAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTTCAATTTTTATAGCCTGAGAACAGGAGACTaGAATCCTGTGGACAACAGG +
Preference number: 2 (lower is better)
Translates to: QERKGDQGSSLEAFNFYSLRTGD*NPVDNR
Trigger: CCTGTTGTCCACAGGATTCCAGTCTCCTGTTCTCAG...GCTATAAAAATTGAAAGCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR-3UTR CCA 90 bp AACATTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCCTGAGAACAGGAGACTaGAATCCTGTGGACAACAGG +
Preference number: 2 (lower is better)
Translates to: NINTLTGEEGRPGQLSGSLRTGD*NPVDNR
Trigger: CCTGTTGTCCACAGGATTCCAGTCTCCTGTTCTCAG...GCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAATGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR-3UTR GCA 90 bp CTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTTCAATTTTGGCCGTGTGAACTGCTaGAGATGTTCATGGAAAAAG +
Preference number: 2 (lower is better)
Translates to: LLQERKGDQGSSLEAFNFGRVNC*RCSWKK
Trigger: CTTTTTCCATGAACATCTGCAGCAGTTCACACGGCC...AAAATTGAAAGCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR-3UTR CCA 90 bp GTGAGCGAGGCTGCCTTCCTCGAGCCCTTGGGCCCCAACATTAATACTCTTACATGCTGCAGATGTTCATaGAAAAAGATGTTCTTTGCT +
Preference number: 2 (lower is better)
Translates to: VSEAAFLEPLGPNINTLTCCRCS*KKMFFA
Trigger: AGCAAAGAACATCTTTTTCCATGAACATCTGCAGCA...TGTAAGAGTATTAATGTTGGGGCCCAAGGGCTCGAGGAAGGCAGCCTCGCTCAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR-3UTR CCA 90 bp CTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTTCAATTTTTGCTGCAGATGTTCATaGAAAAAGATGTTCTTTGCT +
Preference number: 2 (lower is better)
Translates to: LLQERKGDQGSSLEAFNFCCRCS*KKMFFA
Trigger: AGCAAAGAACATCTTTTTCCATGAACATCTGCAGCA...AAAATTGAAAGCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR CCA 72 bp CGCAGTGGGCAGGCGCCACTGAGGTGGCCTGTGAGGTaGGTGCCCCCAGCCGAGGGTGGCTCTGCTGGAGAG +
Preference number: 3 (lower is better)
Translates to: RSGQAPLRWPVR*VPPAEGGSAGE
Trigger: CTCTCCAGCAGAGCCACCCTCGGCTGGGGGCACCCACCTCACAGGCCACCTCAGTGGCGCCTGCCCACTGCG
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
3UTR GCA 72 bp TGCGGCGCTGCCTGGCCAGACCCGGCTACTAGGGTGTaGCAGGCCTCTACCAGCCAGGGTTGCTCTAGCCGC +
Preference number: 3 (lower is better)
Translates to: CGAAWPDPATRV*QASTSQGCSSR
Trigger: GCGGCTAGAGCAACCCTGGCTGGTAGAGGCCTGGCACACCCTAGTAGCCGGGTCTGGCCAGGCAGCGCCGCA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR-3UTR CAA 90 bp CCGCAGTGCCCCCTCCTTCAGCACTGCCAGGAGCGTCCAGCCCTCCGACAGCTCTCTCCTCCCTTGGCCTaGGGACAGGGCCTGCCACAT +
Preference number: 3 (lower is better)
Translates to: PQCPLLQHCQERPALRQLSPPLA*GQGLPH
Trigger: ATGTGGCAGGCCCTGTCCCAAGGCCAAGGGAGGAGA...GAGCTGTCGGAGGGCTGGACGCTCCTGGCAGTGCTGAAGGAGGGGGCACTGCGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
3UTR-3UTR CAA 90 bp CCGCAGTGCCCCCTCCTTCAGCACTGCCAGGAGCGTCCAGCCCTCCGACAGCTCCCAGTGGGCATCTCCTaGACACACGGCCAGAGGCAG +
Preference number: 3 (lower is better)
Translates to: PQCPLLQHCQERPALRQLPVGIS*THGQRQ
Trigger: CTGCCTCTGGCCGTGTGTCAAGGAGATGCCCACTGG...GAGCTGTCGGAGGGCTGGACGCTCCTGGCAGTGCTGAAGGAGGGGGCACTGCGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
3UTR TCA 72 bp CCTGGGTCCCTGCGGCCTATGTCCCGCCCCAGTGTGTaGAGTGTGCACAGGCACACGCACTCGCCCACTCGC +
Preference number: 3 (lower is better)
Translates to: PGSLRPMSRPSV*SVHRHTHSPTR
Trigger: GCGAGTGGGCGAGTGCGTGTGCCTGTGCACACTTCACACACTGGGGCGGGACATAGGCCGCAGGGACCCAGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR GCA 72 bp CACCTCAGAGGGGGACAGAGTTGCTGTTCAGAGCCATaGGGCGCTGCCTGGCCAGACCCGGCTACTAGGGTG +
Preference number: 3 (lower is better)
Translates to: HLRGGQSCCSEP*GAAWPDPATRV
Trigger: CACCCTAGTAGCCGGGTCTGGCCAGGCAGCGCCGCATGGCTCTGAACAGCAACTCTGTCCCCCTCTGAGGTG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR-3UTR CAA 90 bp CAGGAGCGTCCAGCCCTCCGACAGCTCGGCGAGGTAGGTAGGAGCAGCCAGCCCGCCTTCCTCGAGCCCTaGGGCCCCAACATTAATACT +
Preference number: 3 (lower is better)
Translates to: QERPALRQLGEVGRSSQPAFLEP*GPNINT
Trigger: AGTATTAATGTTGGGGCCCAAGGGCTCGAGGAAGGC...GGGCTGGCTGCTCCTACCTACCTCGCCGAGCTGTCGGAGGGCTGGACGCTCCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
3UTR-3UTR CAA 90 bp CACCCTGTCTGCAGCCAGCCCGGCACCTGTCTTAAGGCTCCAAGGCCATCTGCAGCTGGAGAGCTAGACTaGGGCAGCCAAGCCCCTGCC +
Preference number: 3 (lower is better)
Translates to: HPVCSQPGTCLKAPRPSAAGELD*GSQAPA
Trigger: GGCAGGGGCTTGGCTGCCCAAGTCTAGCTCTCCAGC...TGCAGATGGCCTTGGAGCCTTAAGACAGGTGCCGGGCTGGCTGCAGACAGGGTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
3UTR GCA 72 bp GACCAACCACATTTGCCTGAGGCGACCCTGGGTCCCTaGGGCCTATGTCCCGCCCCAGTGTGTGAAGTGTGC +
Preference number: 3 (lower is better)
Translates to: DQPHLPEATLGP*GLCPAPVCEVC
Trigger: GCACACTTCACACACTGGGGCGGGACATAGGCCGCAGGGACCCAGGGTCGCCTCAGGCAAATGTGGTTGGTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR GCA 72 bp CTCTGCTGGAGAGCTAGACTTGGGCAGCCAAGCCCCTaGCTGCTCAGGCTCCACCAGCCTGTCCCTTCAGCA +
Preference number: 3 (lower is better)
Translates to: LCWRARLGQPSP*LLRLHQPVPSA
Trigger: TGCTGAAGGGACAGGCTGGTGGAGCCTGAGCAGGCAGGGGCTTGGCTGCCCAAGTCTAGCTCTCCAGCAGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
3UTR CCA 72 bp CGGCCCACGTGGGACAGCCTTCTCCTCCCTTGGCCTTaGGACAGGGCCTGCCACATCTCAGAAGCAAGCTAC +
Preference number: 3 (lower is better)
Translates to: RPTWDSLLLPWP*DRACHISEASY
Trigger: GTAGCTTGCTTCTGAGATGTGGCAGGCCCTGTCCCAAGGCCAAGGGAGGAGAAGGCTGTCCCACGTGGGCCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR CCA 72 bp TTGCTGCCACAGCTGGACACAGTTCAGCGGCCCACGTaGGACAGCCTTCTCCTCCCTTGGCCTTGGGACAGG +
Preference number: 3 (lower is better)
Translates to: LLPQLDTVQRPT*DSLLLPWPWDR
Trigger: CCTGTCCCAAGGCCAAGGGAGGAGAAGGCTGTCCCACGTGGGCCGCTGAACTGTGTCCAGCTGTGGCAGCAA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR-3UTR CAA 90 bp GACCCTGGGCTGGGCCCAGATGCCACACTGTCTCCTCTCCCATGGGGGATGGATACCGACCAACCACATTaGCCTGAGGCGACCCTGGGT +
Preference number: 3 (lower is better)
Translates to: DPGLGPDATLSPLPWGMDTDQPH*PEATLG
Trigger: ACCCAGGGTCGCCTCAGGCAAATGTGGTTGGTCGGT...ATCCATCCCCCATGGGAGAGGAGACAGTGTGGCATCTGGGCCCAGCCCAGGGTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR-3UTR CAA 90 bp ACTTGCCCGCAGTGCCCCCTCCTTCAGCACTGCCAGGAGCGTCCAGCCCTCCGAGCCTTCCTCGAGCCCTaGGGCCCCAACATTAATACT +
Preference number: 3 (lower is better)
Translates to: TCPQCPLLQHCQERPALRAFLEP*GPNINT
Trigger: AGTATTAATGTTGGGGCCCAAGGGCTCGAGGAAGGC...TCGGAGGGCTGGACGCTCCTGGCAGTGCTGAAGGAGGGGGCACTGCGGGCAAGT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
3UTR-3UTR CAA 90 bp CAGAAGACGCCTAGGATAGTCAGACCCTGGGCTGGGCCCAGATGCCACACTGTCCAGCCTTCTCCTCCCTaGGCCTTGGGACAGGGCCTG +
Preference number: 3 (lower is better)
Translates to: QKTPRIVRPWAGPRCHTVQPSPP*ALGQGL
Trigger: CAGGCCCTGTCCCAAGGCCAAGGGAGGAGAAGGCTG...GACAGTGTGGCATCTGGGCCCAGCCCAGGGTCTGACTATCCTAGGCGTCTTCTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR TCA 72 bp TGTGCACAGGCACACGCACTCGCCCACTCGCGTGTGTaGGTGAAGTGCTTAGGCCTTCCTGGCTCCTCAGCC +
Preference number: 3 (lower is better)
Translates to: CAQAHALAHSRV*VKCLGLPGSSA
Trigger: GGCTGAGGAGCCAGGAAGGCCTAAGCACTTCACTCACACACGCGAGTGGGCGAGTGCGTGTGCCTGTGCACA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR TCA 72 bp AGCCCCAGGCCACATTCCTGCCCATGCGGCCTGAAGTaGGTGCCAGGGAGGGACACACATCTCTCCAAGCCT +
Preference number: 3 (lower is better)
Translates to: SPRPHSCPCGLK*VPGRDTHLSKP
Trigger: AGGCTTGGAGAGATGTGTGTCCCTCCCTGGCACTCACTTCAGGCCGCATGGGCAGGAATGTGGCCTGGGGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
3UTR GCA 72 bp ACGCCTAGGATAGTCAGACCCTGGGCTGGGCCCAGATaGCACACTGTCTCCTCTCCCATGGGGGATGGATGG +
Preference number: 3 (lower is better)
Translates to: TPRIVRPWAGPR*HTVSSPMGDGW
Trigger: CCATCCATCCCCCATGGGAGAGGAGACAGTGTGGCATCTGGGCCCAGCCCAGGGTCTGACTATCCTAGGCGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR CCA 72 bp GGGCTGGGCCCAGATGCCACACTGTCTCCTCTCCCATaGGGGATGGATGGCTTGTCACCTTCCAGGTCACAG +
Preference number: 3 (lower is better)
Translates to: GLGPDATLSPLP*GMDGLSPSRSQ
Trigger: CTGTGACCTGGAAGGTGACAAGCCATCCATCCCCCATGGGAGAGGAGACAGTGTGGCATCTGGGCCCAGCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR-3UTR CAA 90 bp CCAGAGGAGCCTGGGAAATGGAGACCGCTCCCTTTGCTGCCACAGCTGGACACACAGAGGGGGACAGAGTaGCTGTTCAGAGCCATGCGG +
Preference number: 3 (lower is better)
Translates to: PEEPGKWRPLPLLPQLDTQRGTE*LFRAMR
Trigger: CCGCATGGCTCTGAACAGCAACTCTGTCCCCCTCTG...TGTGTCCAGCTGTGGCAGCAAAGGGAGCGGTCTCCATTTCCCAGGCTCCTCTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR-3UTR CAA 90 bp CAGAAGACGCCTAGGATAGTCAGACCCTGGGCTGGGCCCAGATGCCACACTGTCACCGACCAACCACATTaGCCTGAGGCGACCCTGGGT +
Preference number: 3 (lower is better)
Translates to: QKTPRIVRPWAGPRCHTVTDQPH*PEATLG
Trigger: ACCCAGGGTCGCCTCAGGCAAATGTGGTTGGTCGGT...GACAGTGTGGCATCTGGGCCCAGCCCAGGGTCTGACTATCCTAGGCGTCTTCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR CCA 72 bp GGCTACCCTCCCACTTCCACAGTGTCTGAAGACGGTTaGAGCCCCAGTGGGCATCTCCTTGACACACGGCCA +
Preference number: 3 (lower is better)
Translates to: GYPPTSTVSEDG*SPSGHLLDTRP
Trigger: TGGCCGTGTGTCAAGGAGATGCCCACTGGGGCTCCAACCGTCTTCAGACACTGTGGAAGTGGGAGGGTAGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR-3UTR CAA 90 bp TCCTCTCCCATGGGGGATGGATGGCTTGTCACCTTCCAGGTCACAGAACCAGGCACCGACCAACCACATTaGCCTGAGGCGACCCTGGGT +
Preference number: 3 (lower is better)
Translates to: SSPMGDGWLVTFQVTEPGTDQPH*PEATLG
Trigger: ACCCAGGGTCGCCTCAGGCAAATGTGGTTGGTCGGT...GCCTGGTTCTGTGACCTGGAAGGTGACAAGCCATCCATCCCCCATGGGAGAGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR CCA 72 bp AGATGCCACACTGTCTCCTCTCCCATGGGGGATGGATaGCTTGTCACCTTCCAGGTCACAGAACCAGGCCTG +
Preference number: 3 (lower is better)
Translates to: RCHTVSSPMGDG*LVTFQVTEPGL
Trigger: CAGGCCTGGTTCTGTGACCTGGAAGGTGACAAGCCATCCATCCCCCATGGGAGAGGAGACAGTGTGGCATCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR GCA 72 bp AGCCCAGGTGACAGGAACCACAACCCTCCCCTTGGGTaGGAAGATTCCACGTTAGCTCTGAGAGCAGAGTTC +
Preference number: 3 (lower is better)
Translates to: SPGDRNHNPPLG*EDSTLALRAEF
Trigger: GAACTCTGCTCTCAGAGCTAACGTGGAATCTTCGCACCCAAGGGGAGGGTTGTGGTTCCTGTCACCTGGGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR GCA 72 bp TCCTTCCGTCTACCGGCTACTCTCTCCTCCCCTCTGTaGAGTTCTAGAAAAGGAGGCCATGCTAAGCCAAGG +
Preference number: 3 (lower is better)
Translates to: SFRLPATLSSPL*SSRKGGHAKPR
Trigger: CCTTGGCTTAGCATGGCCTCCTTTTCTAGAACTGCACAGAGGGGAGGAGAGAGTAGCCGGTAGACGGAAGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
3UTR CCA 72 bp TCTAGCTTCAACACAGACACACAGAACTCTGCCGTGTaGTTCCTCCACCTGGAGGTTCCCCTGTCACCTCCA +
Preference number: 3 (lower is better)
Translates to: SSFNTDTQNSAV*FLHLEVPLSPP
Trigger: TGGAGGTGACAGGGGAACCTCCAGGTGGAGGAACCACACGGCAGAGTTCTGTGTGTCTGTGTTGAAGCTAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR-3UTR CAA 90 bp TTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTTCCAGAGGGGGACAGAGTaGCTGTTCAGAGCCATGCGG +
Preference number: 3 (lower is better)
Translates to: LILLQERKGDQGSSLEAFQRGTE*LFRAMR
Trigger: CCGCATGGCTCTGAACAGCAACTCTGTCCCCCTCTG...GAAAGCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR GCA 72 bp ACGTTAGCTCTGAGAGCAGAGTTCTCCATTGACACCTaGTCAGGGTTAGGAAGAGGCCGTGTGAACTGCTGC +
Preference number: 3 (lower is better)
Translates to: TLALRAEFSIDT*SGLGRGRVNCC
Trigger: GCAGCAGTTCACACGGCCTCTTCCTAACCCTGAGCAGGTGTCAATGGAGAACTCTGCTCTCAGAGCTAACGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR TCA 72 bp AGATTCCACGTTAGCTCTGAGAGCAGAGTTCTCCATTaGCACCTGCTCAGGGTTAGGAAGAGGCCGTGTGAA +
Preference number: 3 (lower is better)
Translates to: RFHVSSESRVLH*HLLRVRKRPCE
Trigger: TTCACACGGCCTCTTCCTAACCCTGAGCAGGTGTCAATGGAGAACTCTGCTCTCAGAGCTAACGTGGAATCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR GCA 72 bp GACACCTGCTCAGGGTTAGGAAGAGGCCGTGTGAACTaGTGCAGATGTTCATGGAAAAAGATGTTCTTTGCT +
Preference number: 3 (lower is better)
Translates to: DTCSGLGRGRVN*CRCSWKKMFFA
Trigger: AGCAAAGAACATCTTTTTCCATGAACATCTGCAGCAGTTCACACGGCCTCTTCCTAACCCTGAGCAGGTGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR TCA 72 bp AAAGATTTGCATATGCTAAATAGGATTGTCAGCAGCTaGGGAGGTCACGGGGATGATTGGACTTATAAAATC +
Preference number: 3 (lower is better)
Translates to: KDLHMLNRIVSS*GGHGDDWTYKI
Trigger: GATTTTATAAGTCCAATCATCCCCGTGACCTCCTCAGCTGCTGACAATCCTATTTAGCATATGCAAATCTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS-3UTR CCA 90 bp CAGGAGCGTCCAGCCCTCCGACAGCTCGGCGAGGTAGGTAGGAGCAGCCAGCCCGGCTCCCTGGAGAGGTaGCCTCTGCGTCCCCTGCCC +
Preference number: 4 (lower is better)
Translates to: QERPALRQLGEVGRSSQPGSLER*PLRPLP
Trigger: GGGCAGGGGACGCAGAGGCCACCTCTCCAGGGAGCC...GGGCTGGCTGCTCCTACCTACCTCGCCGAGCTGTCGGAGGGCTGGACGCTCCTG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS-3UTR CCA 90 bp CAGGAGCGTCCAGCCCTCCGACAGCTCGGCGAGGTAGGTAGGAGCAGCCAGCCCCTCCACCTCTGGGGGTaGTGGGGACCTGGGAGCGGC +
Preference number: 4 (lower is better)
Translates to: QERPALRQLGEVGRSSQPLHLWG*WGPGSG
Trigger: GCCGCTCCCAGGTCCCCACCACCCCCAGAGGTGGAG...GGGCTGGCTGCTCCTACCTACCTCGCCGAGCTGTCGGAGGGCTGGACGCTCCTG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS-3UTR CCA 90 bp GCCCCCTCCTTCAGCACTGCCAGGAGCGTCCAGCCCTCCGACAGCTCGGCGAGGCTCCGGAAGGCCCGCTaGATGACCGTGGCCGACACC +
Preference number: 4 (lower is better)
Translates to: APSFSTARSVQPSDSSARLRKAR*MTVADT
Trigger: GGTGTCGGCCACGGTCATCCAGCGGGCCTTCCGGAG...CCTCGCCGAGCTGTCGGAGGGCTGGACGCTCCTGGCAGTGCTGAAGGAGGGGGC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS-3UTR TCA 90 bp CCGCAGTGCCCCCTCCTTCAGCACTGCCAGGAGCGTCCAGCCCTCCGACAGCTCCGCCCACCAGCGCGTTaGCCACCACCCTCATGCCCT +
Preference number: 4 (lower is better)
Translates to: PQCPLLQHCQERPALRQLRPPAR*PPPSCP
Trigger: AGGGCATGAGGGTGGTGGTCAACGCGCTGGTGGGCG...GAGCTGTCGGAGGGCTGGACGCTCCTGGCAGTGCTGAAGGAGGGGGCACTGCGG
70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS-3UTR CCA 90 bp CCGCAGTGCCCCCTCCTTCAGCACTGCCAGGAGCGTCCAGCCCTCCGACAGCTCCACCTCTGGGGGTGGTaGGGACCTGGGAGCGGCGAT +
Preference number: 4 (lower is better)
Translates to: PQCPLLQHCQERPALRQLHLWGW*GPGSGD
Trigger: ATCGCCGCTCCCAGGTCCCCACCACCCCCAGAGGTG...GAGCTGTCGGAGGGCTGGACGCTCCTGGCAGTGCTGAAGGAGGGGGCACTGCGG
70% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS-3UTR CCA 90 bp CAGGAGCGTCCAGCCCTCCGACAGCTCGGCGAGGTAGGTAGGAGCAGCCAGCCCGCTCTGCGCACCGGGTaGAAGGGGCTGAGGACGTAC +
Preference number: 4 (lower is better)
Translates to: QERPALRQLGEVGRSSQPALRTG*KGLRTY
Trigger: GTACGTCCTCAGCCCCTTCCACCCGGTGCGCAGAGC...GGGCTGGCTGCTCCTACCTACCTCGCCGAGCTGTCGGAGGGCTGGACGCTCCTG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS-3UTR CCA 90 bp CAGGAGCGTCCAGCCCTCCGACAGCTCGGCGAGGTAGGTAGGAGCAGCCAGCCCGTGGTCTCTGACACCTaGCTCCAGGCCCTGGGCTCC +
Preference number: 4 (lower is better)
Translates to: QERPALRQLGEVGRSSQPVVSDT*LQALGS
Trigger: GGAGCCCAGGGCCTGGAGCCAGGTGTCAGAGACCAC...GGGCTGGCTGCTCCTACCTACCTCGCCGAGCTGTCGGAGGGCTGGACGCTCCTG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
3UTR CAA 72 bp CCCCCAGCCGAGGGTGGCTCTGCTGGAGAGCTAGACTaGGGCAGCCAAGCCCCTGCCTGCTCAGGCTCCACC +
Preference number: 4 (lower is better)
Translates to: PPAEGGSAGELD*GSQAPACSGST
Trigger: GGTGGAGCCTGAGCAGGCAGGGGCTTGGCTGCCCAAGTCTAGCTCTCCAGCAGAGCCACCCTCGGCTGGGGG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS-3UTR TCA 90 bp GCCCCCTCCTTCAGCACTGCCAGGAGCGTCCAGCCCTCCGACAGCTCGGCGAGGCCCAGGTGGTCCGCTTaGCAAAGCGAAGGCCCCTTT +
Preference number: 4 (lower is better)
Translates to: APSFSTARSVQPSDSSARPRWSA*QSEGPF
Trigger: AAAGGGGCCTTCGCTTTGTCAAGCGGACCACCTGGG...CCTCGCCGAGCTGTCGGAGGGCTGGACGCTCCTGGCAGTGCTGAAGGAGGGGGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS-3UTR TCA 90 bp CAGGAGCGTCCAGCCCTCCGACAGCTCGGCGAGGTAGGTAGGAGCAGCCAGCCCAGTCCTCTGGGTCCTTaGCGTCCTCCCCGAGGTCTG +
Preference number: 4 (lower is better)
Translates to: QERPALRQLGEVGRSSQPSPLGP*RPPRGL
Trigger: CAGACCTCGGGGAGGACGTCAAGGACCCAGAGGACT...GGGCTGGCTGCTCCTACCTACCTCGCCGAGCTGTCGGAGGGCTGGACGCTCCTG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS-3UTR TCA 90 bp GCCCCCTCCTTCAGCACTGCCAGGAGCGTCCAGCCCTCCGACAGCTCGGCGAGGGGACGCAGCCTTCAGTaGAGCAGTCCTCTGGGTCCT +
Preference number: 4 (lower is better)
Translates to: APSFSTARSVQPSDSSARGRSLQ*SSPLGP
Trigger: AGGACCCAGAGGACTGCTTCACTGAAGGCTGCGTCC...CCTCGCCGAGCTGTCGGAGGGCTGGACGCTCCTGGCAGTGCTGAAGGAGGGGGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS-3UTR CCA 90 bp GACCCTGGGCTGGGCCCAGATGCCACACTGTCTCCTCTCCCATGGGGGATGGATGGCTCCCTGGAGAGGTaGCCTCTGCGTCCCCTGCCC +
Preference number: 4 (lower is better)
Translates to: DPGLGPDATLSPLPWGMDGSLER*PLRPLP
Trigger: GGGCAGGGGACGCAGAGGCCACCTCTCCAGGGAGCC...ATCCATCCCCCATGGGAGAGGAGACAGTGTGGCATCTGGGCCCAGCCCAGGGTC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp GAGCCATGCGGCGCTGCCTGGCCAGACCCGGCTACTAGGGTGTGCCAGGCCTCTGAGAAGGTGGCTCCCTaGAGAGGTGGCCTCTGCGTC +
Preference number: 4 (lower is better)
Translates to: EPCGAAWPDPATRVCQASEKVAP*RGGLCV
Trigger: GACGCAGAGGCCACCTCTCCAGGGAGCCACCTTCTC...AGAGGCCTGGCACACCCTAGTAGCCGGGTCTGGCCAGGCAGCGCCGCATGGCTC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp GCCCCCTCCTTCAGCACTGCCAGGAGCGTCCAGCCCTCCGACAGCTCGGCGAGGATACAGCTGGGCAGCTaGCTGTGGGTGGCAAGAGCC +
Preference number: 4 (lower is better)
Translates to: APSFSTARSVQPSDSSARIQLGS*LWVARA
Trigger: GGCTCTTGCCACCCACAGCCAGCTGCCCAGCTGTAT...CCTCGCCGAGCTGTCGGAGGGCTGGACGCTCCTGGCAGTGCTGAAGGAGGGGGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS-3UTR CCA 90 bp CGGCTACTAGGGTGTGCCAGGCCTCTACCAGCCAGGGTTGCTCTAGCCGCCTCTCTCCACCTCTGGGGGTaGTGGGGACCTGGGAGCGGC +
Preference number: 4 (lower is better)
Translates to: RLLGCARPLPARVALAASLHLWG*WGPGSG
Trigger: GCCGCTCCCAGGTCCCCACCACCCCCAGAGGTGGAG...AGAGGCGGCTAGAGCAACCCTGGCTGGTAGAGGCCTGGCACACCCTAGTAGCCG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp GTTGCTGTTCAGAGCCATGCGGCGCTGCCTGGCCAGACCCGGCTACTAGGGTGTCTCCACCTCTGGGGGTaGTGGGGACCTGGGAGCGGC +
Preference number: 4 (lower is better)
Translates to: VAVQSHAALPGQTRLLGCLHLWG*WGPGSG
Trigger: GCCGCTCCCAGGTCCCCACCACCCCCAGAGGTGGAG...ACACCCTAGTAGCCGGGTCTGGCCAGGCAGCGCCGCATGGCTCTGAACAGCAAC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp CCGCAGTGCCCCCTCCTTCAGCACTGCCAGGAGCGTCCAGCCCTCCGACAGCTCTGTTTCCTTGCGGGCTaGGGGCGCCTTCTCCACCTC +
Preference number: 4 (lower is better)
Translates to: PQCPLLQHCQERPALRQLCFLAG*GRLLHL
Trigger: GAGGTGGAGAAGGCGCCCCCAGCCCGCAAGGAAACA...GAGCTGTCGGAGGGCTGGACGCTCCTGGCAGTGCTGAAGGAGGGGGCACTGCGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS-3UTR TCA 90 bp CGGCTACTAGGGTGTGCCAGGCCTCTACCAGCCAGGGTTGCTCTAGCCGCCTCTCGCCCACCAGCGCGTTaGCCACCACCCTCATGCCCT +
Preference number: 4 (lower is better)
Translates to: RLLGCARPLPARVALAASRPPAR*PPPSCP
Trigger: AGGGCATGAGGGTGGTGGTCAACGCGCTGGTGGGCG...AGAGGCGGCTAGAGCAACCCTGGCTGGTAGAGGCCTGGCACACCCTAGTAGCCG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp GAGCCATGCGGCGCTGCCTGGCCAGACCCGGCTACTAGGGTGTGCCAGGCCTCTGTCAGGGTTCTCACCTaGCTTCAGGCACCGGTAGCC +
Preference number: 4 (lower is better)
Translates to: EPCGAAWPDPATRVCQASVRVLT*LQAPVA
Trigger: GGCTACCGGTGCCTGAAGGCAGGTGAGAACCCTGAC...AGAGGCCTGGCACACCCTAGTAGCCGGGTCTGGCCAGGCAGCGCCGCATGGCTC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp CAGGAGCGTCCAGCCCTCCGACAGCTCGGCGAGGTAGGTAGGAGCAGCCAGCCCTCCCCCTGGAGCCATTaGTGTTGGGCAGGTTGGGGT +
Preference number: 4 (lower is better)
Translates to: QERPALRQLGEVGRSSQPSPWSH*CWAGWG
Trigger: ACCCCAACCTGCCCAACAGCAATGGCTCCAGGGGGA...GGGCTGGCTGCTCCTACCTACCTCGCCGAGCTGTCGGAGGGCTGGACGCTCCTG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS-3UTR CCA 90 bp AGTTGCTGTTCAGAGCCATGCGGCGCTGCCTGGCCAGACCCGGCTACTAGGGTGGGGGTGGTGGGGACCTaGGAGCGGCGATACAGCTGG +
Preference number: 4 (lower is better)
Translates to: SCCSEPCGAAWPDPATRVGVVGT*ERRYSW
Trigger: CCAGCTGTATCGCCGCTCCCAGGTCCCCACCACCCC...CACCCTAGTAGCCGGGTCTGGCCAGGCAGCGCCGCATGGCTCTGAACAGCAACT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp CCGCAGTGCCCCCTCCTTCAGCACTGCCAGGAGCGTCCAGCCCTCCGACAGCTCGTCCTCCCCGAGGTCTaGGATTTGCTCCAGGAGGTC +
Preference number: 4 (lower is better)
Translates to: PQCPLLQHCQERPALRQLVLPEV*DLLQEV
Trigger: GACCTCCTGGAGCAAATCCCAGACCTCGGGGAGGAC...GAGCTGTCGGAGGGCTGGACGCTCCTGGCAGTGCTGAAGGAGGGGGCACTGCGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS-3UTR TCA 90 bp CCGCAGTGCCCCCTCCTTCAGCACTGCCAGGAGCGTCCAGCCCTCCGACAGCTCTGTTGGCCACGAGGCTaGCCAGTGAGACGTCCACAA +
Preference number: 4 (lower is better)
Translates to: PQCPLLQHCQERPALRQLCWPRG*PVRRPQ
Trigger: TTGTGGACGTCTCACTGGTCAGCCTCGTGGCCAACA...GAGCTGTCGGAGGGCTGGACGCTCCTGGCAGTGCTGAAGGAGGGGGCACTGCGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS-3UTR TCA 90 bp ACTTGCCCGCAGTGCCCCCTCCTTCAGCACTGCCAGGAGCGTCCAGCCCTCCGACATGCCCTCGAATCGTaGCAAAGCCCTCAGGGGTCG +
Preference number: 4 (lower is better)
Translates to: TCPQCPLLQHCQERPALRHALES*QSPQGS
Trigger: CGACCCCTGAGGGCTTTGTCACGATTCGAGGGCATG...TCGGAGGGCTGGACGCTCCTGGCAGTGCTGAAGGAGGGGGCACTGCGGGCAAGT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS-3UTR TCA 90 bp GACAGAGTTGCTGTTCAGAGCCATGCGGCGCTGCCTGGCCAGACCCGGCTACTAGGAAGGCCCGCTGGATaGCCGTGGCCGACACCTCCT +
Preference number: 4 (lower is better)
Translates to: DRVAVQSHAALPGQTRLLGRPAG*PWPTPP
Trigger: AGGAGGTGTCGGCCACGGTCATCCAGCGGGCCTTCC...TAGTAGCCGGGTCTGGCCAGGCAGCGCCGCATGGCTCTGAACAGCAACTCTGTC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp CTGAAGACGGTTGGAGCCCCAGTGGGCATCTCCTTGACACACGGCCAGAGGCAGGGAAGGCCCGCTGGATaGCCGTGGCCGACACCTCCT +
Preference number: 4 (lower is better)
Translates to: LKTVGAPVGISLTHGQRQGRPAG*PWPTPP
Trigger: AGGAGGTGTCGGCCACGGTCATCCAGCGGGCCTTCC...CTGCCTCTGGCCGTGTGTCAAGGAGATGCCCACTGGGGCTCCAACCGTCTTCAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp GCCCCCTCCTTCAGCACTGCCAGGAGCGTCCAGCCCTCCGACAGCTCGGCGAGGTTCTTGCCGAAGAGCTaGATACCCACCACGGCGAAG +
Preference number: 4 (lower is better)
Translates to: APSFSTARSVQPSDSSARFLPKS*IPTTAK
Trigger: CTTCGCCGTGGTGGGTATGCAGCTCTTCGGCAAGAA...CCTCGCCGAGCTGTCGGAGGGCTGGACGCTCCTGGCAGTGCTGAAGGAGGGGGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS-3UTR GCA 90 bp TCTGAAGACGGTTGGAGCCCCAGTGGGCATCTCCTTGACACACGGCCAGAGGCACGGTATCCCCAGGGGTaGCCTGGCCCGGCCGCTTGT +
Preference number: 4 (lower is better)
Translates to: SEDGWSPSGHLLDTRPEARYPQG*PGPAAC
Trigger: ACAAGCGGCCGGGCCAGGGCACCCCTGGGGATACCG...TGCCTCTGGCCGTGTGTCAAGGAGATGCCCACTGGGGCTCCAACCGTCTTCAGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp CCTCTCCCATGGGGGATGGATGGCTTGTCACCTTCCAGGTCACAGAACCAGGCCCGGTATCCCCAGGGGTaGCCTGGCCCGGCCGCTTGT +
Preference number: 4 (lower is better)
Translates to: PLPWGMDGLSPSRSQNQARYPQG*PGPAAC
Trigger: ACAAGCGGCCGGGCCAGGGCACCCCTGGGGATACCG...GGCCTGGTTCTGTGACCTGGAAGGTGACAAGCCATCCATCCCCCATGGGAGAGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp ACTTGCCCGCAGTGCCCCCTCCTTCAGCACTGCCAGGAGCGTCCAGCCCTCCGATCCCCCTGGAGCCATTaGTGTTGGGCAGGTTGGGGT +
Preference number: 4 (lower is better)
Translates to: TCPQCPLLQHCQERPALRSPWSH*CWAGWG
Trigger: ACCCCAACCTGCCCAACAGCAATGGCTCCAGGGGGA...TCGGAGGGCTGGACGCTCCTGGCAGTGCTGAAGGAGGGGGCACTGCGGGCAAGT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS-3UTR CCA 90 bp CGGCTACTAGGGTGTGCCAGGCCTCTACCAGCCAGGGTTGCTCTAGCCGCCTCTCCATGCGCTTCTCGATaGCCGCCAGTGACTCCCGGG +
Preference number: 4 (lower is better)
Translates to: RLLGCARPLPARVALAASPCASR*PPVTPG
Trigger: CCCGGGAGTCACTGGCGGCCATCGAGAAGCGCATGG...AGAGGCGGCTAGAGCAACCCTGGCTGGTAGAGGCCTGGCACACCCTAGTAGCCG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp GACAGAGTTGCTGTTCAGAGCCATGCGGCGCTGCCTGGCCAGACCCGGCTACTAGGGAGCCTCCTCCTCTaGCAGGCCCTCACGGCTCTC +
Preference number: 4 (lower is better)
Translates to: DRVAVQSHAALPGQTRLLGSLLL*QALTAL
Trigger: GAGAGCCGTGAGGGCCTGCCAGAGGAGGAGGCTCCC...TAGTAGCCGGGTCTGGCCAGGCAGCGCCGCATGGCTCTGAACAGCAACTCTGTC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp CCAGAGGAGCCTGGGAAATGGAGACCGCTCCCTTTGCTGCCACAGCTGGACACAGGCTCCCTGGAGAGGTaGCCTCTGCGTCCCCTGCCC +
Preference number: 4 (lower is better)
Translates to: PEEPGKWRPLPLLPQLDTGSLER*PLRPLP
Trigger: GGGCAGGGGACGCAGAGGCCACCTCTCCAGGGAGCC...TGTGTCCAGCTGTGGCAGCAAAGGGAGCGGTCTCCATTTCCCAGGCTCCTCTGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp GACAGAGTTGCTGTTCAGAGCCATGCGGCGCTGCCTGGCCAGACCCGGCTACTACACCTCTGGGGGTGGTaGGGACCTGGGAGCGGCGAT +
Preference number: 4 (lower is better)
Translates to: DRVAVQSHAALPGQTRLLHLWGW*GPGSGD
Trigger: ATCGCCGCTCCCAGGTCCCCACCACCCCCAGAGGTG...TAGTAGCCGGGTCTGGCCAGGCAGCGCCGCATGGCTCTGAACAGCAACTCTGTC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp GAGCCATGCGGCGCTGCCTGGCCAGACCCGGCTACTAGGGTGTGCCAGGCCTCTACGGTGGGAAGGACGTaGAGGAGATGGAAGAGCTGG +
Preference number: 4 (lower is better)
Translates to: EPCGAAWPDPATRVCQASTVGRT*RRWKSW
Trigger: CCAGCTCTTCCATCTCCTCCACGTCCTTCCCACCGT...AGAGGCCTGGCACACCCTAGTAGCCGGGTCTGGCCAGGCAGCGCCGCATGGCTC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp GACCCTGGGCTGGGCCCAGATGCCACACTGTCTCCTCTCCCATGGGGGATGGATTGCTGCCAGTCTGCCTaGGACGTACTGGCCTCGGCT +
Preference number: 4 (lower is better)
Translates to: DPGLGPDATLSPLPWGMDCCQSA*DVLASA
Trigger: AGCCGAGGCCAGTACGTCTCAGGCAGACTGGCAGCA...ATCCATCCCCCATGGGAGAGGAGACAGTGTGGCATCTGGGCCCAGCCCAGGGTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp CAGAAGACGCCTAGGATAGTCAGACCCTGGGCTGGGCCCAGATGCCACACTGTCGGGAGCCTCCTCCTCTaGCAGGCCCTCACGGCTCTC +
Preference number: 4 (lower is better)
Translates to: QKTPRIVRPWAGPRCHTVGSLLL*QALTAL
Trigger: GAGAGCCGTGAGGGCCTGCCAGAGGAGGAGGCTCCC...GACAGTGTGGCATCTGGGCCCAGCCCAGGGTCTGACTATCCTAGGCGTCTTCTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp ACTTGCCCGCAGTGCCCCCTCCTTCAGCACTGCCAGGAGCGTCCAGCCCTCCGACCGTCTCGGCGATGGTaGCTTGGTTTTGCTCCTCGT +
Preference number: 4 (lower is better)
Translates to: TCPQCPLLQHCQERPALRPSRRW*LGFAPR
Trigger: ACGAGGAGCAAAACCAAGCCACCATCGCCGAGACGG...TCGGAGGGCTGGACGCTCCTGGCAGTGCTGAAGGAGGGGGCACTGCGGGCAAGT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS-3UTR CCA 90 bp AGTTGCTGTTCAGAGCCATGCGGCGCTGCCTGGCCAGACCCGGCTACTAGGGTGATAGGGCGGAGAAGGTaGCTCCCTGGAGAGGTGGCC +
Preference number: 4 (lower is better)
Translates to: SCCSEPCGAAWPDPATRVIGRRR*LPGEVA
Trigger: GGCCACCTCTCCAGGGAGCCACCTTCTCCGCCCTAT...CACCCTAGTAGCCGGGTCTGGCCAGGCAGCGCCGCATGGCTCTGAACAGCAACT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp CAGGAGCGTCCAGCCCTCCGACAGCTCGGCGAGGTAGGTAGGAGCAGCCAGCCCGATGGACATCCAGAGTaGGCAGCACTCCCAGATGAG +
Preference number: 4 (lower is better)
Translates to: QERPALRQLGEVGRSSQPDGHPE*AALPDE
Trigger: CTCATCTGGGAGTGCTGCCCACTCTGGATGTCCATC...GGGCTGGCTGCTCCTACCTACCTCGCCGAGCTGTCGGAGGGCTGGACGCTCCTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS-3UTR CCA 90 bp AGTTGCTGTTCAGAGCCATGCGGCGCTGCCTGGCCAGACCCGGCTACTAGGGTGAAGCGAAGGCCCCTTTaGATGCGAGCCAGGGCCAGC +
Preference number: 4 (lower is better)
Translates to: SCCSEPCGAAWPDPATRVKRRPL*MRARAS
Trigger: GCTGGCCCTGGCTCGCATCCAAAGGGGCCTTCGCTT...CACCCTAGTAGCCGGGTCTGGCCAGGCAGCGCCGCATGGCTCTGAACAGCAACT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp CCTCTCCCATGGGGGATGGATGGCTTGTCACCTTCCAGGTCACAGAACCAGGCCCGCCTTCTCCACCTCTaGGGGTGGTGGGGACCTGGG +
Preference number: 4 (lower is better)
Translates to: PLPWGMDGLSPSRSQNQARLLHL*GWWGPG
Trigger: CCCAGGTCCCCACCACCCCCAGAGGTGGAGAAGGCG...GGCCTGGTTCTGTGACCTGGAAGGTGACAAGCCATCCATCCCCCATGGGAGAGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp CAGGAGCGTCCAGCCCTCCGACAGCTCGGCGAGGTAGGTAGGAGCAGCCAGCCCCTCTCGGTCCCTATCTaGAGATGGAGGGAAGTCTGC +
Preference number: 4 (lower is better)
Translates to: QERPALRQLGEVGRSSQPLSVPI*RWREVC
Trigger: GCAGACTTCCCTCCATCTCCAGATAGGGACCGAGAG...GGGCTGGCTGCTCCTACCTACCTCGCCGAGCTGTCGGAGGGCTGGACGCTCCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
3UTR CAA 72 bp AGTTCAGCGGCCCACGTGGGACAGCCTTCTCCTCCCTaGGCCTTGGGACAGGGCCTGCCACATCTCAGAAGC +
Preference number: 4 (lower is better)
Translates to: SSAAHVGQPSPP*ALGQGLPHLRS
Trigger: GCTTCTGAGATGTGGCAGGCCCTGTCCCAAGGCCAAGGGAGGAGAAGGCTGTCCCACGTGGGCCGCTGAACT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp GACAGAGTTGCTGTTCAGAGCCATGCGGCGCTGCCTGGCCAGACCCGGCTACTAGGTCCCGGAGGAAGGTaGACGCATGCAGGCAGAAGC +
Preference number: 4 (lower is better)
Translates to: DRVAVQSHAALPGQTRLLGPGGR*THAGRS
Trigger: GCTTCTGCCTGCATGCGTTCACCTTCCTCCGGGACC...TAGTAGCCGGGTCTGGCCAGGCAGCGCCGCATGGCTCTGAACAGCAACTCTGTC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp CCGCAGTGCCCCCTCCTTCAGCACTGCCAGGAGCGTCCAGCCCTCCGACAGCTCCAGCAAACGGGTCCATaGCCACGAACTTCACCTTCT +
Preference number: 4 (lower is better)
Translates to: PQCPLLQHCQERPALRQLQQTGP*PRTSPS
Trigger: AGAAGGTGAAGTTCGTGGTCATGGACCCGTTTGCTG...GAGCTGTCGGAGGGCTGGACGCTCCTGGCAGTGCTGAAGGAGGGGGCACTGCGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS-3UTR TCA 90 bp GAGCCATGCGGCGCTGCCTGGCCAGACCCGGCTACTAGGGTGTGCCAGGCCTCTCAGCAAACGGGTCCATaGCCACGAACTTCACCTTCT +
Preference number: 4 (lower is better)
Translates to: EPCGAAWPDPATRVCQASQQTGP*PRTSPS
Trigger: AGAAGGTGAAGTTCGTGGTCATGGACCCGTTTGCTG...AGAGGCCTGGCACACCCTAGTAGCCGGGTCTGGCCAGGCAGCGCCGCATGGCTC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp CGGCTACTAGGGTGTGCCAGGCCTCTACCAGCCAGGGTTGCTCTAGCCGCCTCTAGAGGATGTGGTCTCTaGCACCTGGCTCCAGGCCCT +
Preference number: 4 (lower is better)
Translates to: RLLGCARPLPARVALAASRGCGL*HLAPGP
Trigger: AGGGCCTGGAGCCAGGTGTCAGAGACCACATCCTCT...AGAGGCGGCTAGAGCAACCCTGGCTGGTAGAGGCCTGGCACACCCTAGTAGCCG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp GACAGAGTTGCTGTTCAGAGCCATGCGGCGCTGCCTGGCCAGACCCGGCTACTAAGTCCTCTGGGTCCTTaGCGTCCTCCCCGAGGTCTG +
Preference number: 4 (lower is better)
Translates to: DRVAVQSHAALPGQTRLLSPLGP*RPPRGL
Trigger: CAGACCTCGGGGAGGACGTCAAGGACCCAGAGGACT...TAGTAGCCGGGTCTGGCCAGGCAGCGCCGCATGGCTCTGAACAGCAACTCTGTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp GTTGCTGTTCAGAGCCATGCGGCGCTGCCTGGCCAGACCCGGCTACTAGGGTGTGGACGCAGCCTTCAGTaGAGCAGTCCTCTGGGTCCT +
Preference number: 4 (lower is better)
Translates to: VAVQSHAALPGQTRLLGCGRSLQ*SSPLGP
Trigger: AGGACCCAGAGGACTGCTTCACTGAAGGCTGCGTCC...ACACCCTAGTAGCCGGGTCTGGCCAGGCAGCGCCGCATGGCTCTGAACAGCAAC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp ACTCGCCCACTCGCGTGTGTGAGTGAAGTGCTTAGGCCTTCCTGGCTCCTCAGCCTCCTCGGATCAGCCTaGGGATGCGGCCGATCCTGG +
Preference number: 4 (lower is better)
Translates to: TRPLACVSEVLRPSWLLSLLGSA*GCGRSW
Trigger: CCAGGATCGGCCGCATCCTCAGGCTGATCCGAGGAG...GCTGAGGAGCCAGGAAGGCCTAAGCACTTCACTCACACACGCGAGTGGGCGAGT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp TCCTCTCCCATGGGGGATGGATGGCTTGTCACCTTCCAGGTCACAGAACCAGGCGGAAGGCCCGCTGGATaGCCGTGGCCGACACCTCCT +
Preference number: 4 (lower is better)
Translates to: SSPMGDGWLVTFQVTEPGGRPAG*PWPTPP
Trigger: AGGAGGTGTCGGCCACGGTCATCCAGCGGGCCTTCC...GCCTGGTTCTGTGACCTGGAAGGTGACAAGCCATCCATCCCCCATGGGAGAGGA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp TCTGAAGACGGTTGGAGCCCCAGTGGGCATCTCCTTGACACACGGCCAGAGGCATCTTCACAGCCGCTCTaGGCACCGGGTGGAAGGGGC +
Preference number: 4 (lower is better)
Translates to: SEDGWSPSGHLLDTRPEASSQPL*APGGRG
Trigger: GCCCCTTCCACCCGGTGCGCAGAGCGGCTGTGAAGA...TGCCTCTGGCCGTGTGTCAAGGAGATGCCCACTGGGGCTCCAACCGTCTTCAGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp CGGCTACTAGGGTGTGCCAGGCCTCTACCAGCCAGGGTTGCTCTAGCCGCCTCTGTCAGGGTTCTCACCTaGCTTCAGGCACCGGTAGCC +
Preference number: 4 (lower is better)
Translates to: RLLGCARPLPARVALAASVRVLT*LQAPVA
Trigger: GGCTACCGGTGCCTGAAGGCAGGTGAGAACCCTGAC...AGAGGCGGCTAGAGCAACCCTGGCTGGTAGAGGCCTGGCACACCCTAGTAGCCG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp CCGCAGTGCCCCCTCCTTCAGCACTGCCAGGAGCGTCCAGCCCTCCGACAGCTCAGGAAACCACCCCATTaGAGTCCACGGTGCTGTTTC +
Preference number: 4 (lower is better)
Translates to: PQCPLLQHCQERPALRQLRKPPH*SPRCCF
Trigger: GAAACAGCACCGTGGACTGCAATGGGGTGGTTTCCT...GAGCTGTCGGAGGGCTGGACGCTCCTGGCAGTGCTGAAGGAGGGGGCACTGCGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS-3UTR GCA 90 bp AGTTGCTGTTCAGAGCCATGCGGCGCTGCCTGGCCAGACCCGGCTACTAGGGTGTCTGCACATGGAGCCTaGGGTGTCAGCATCTGGGGC +
Preference number: 4 (lower is better)
Translates to: SCCSEPCGAAWPDPATRVSAHGA*GVSIWG
Trigger: GCCCCAGATGCTGACACCGCAGGCTCCATGTGCAGA...CACCCTAGTAGCCGGGTCTGGCCAGGCAGCGCCGCATGGCTCTGAACAGCAACT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp CAGGAGCGTCCAGCCCTCCGACAGCTCGGCGAGGTAGGTAGGAGCAGCCAGCCCAATGAGCTCTCGGGGTaGGTTGCCATAGAGATCTGG +
Preference number: 4 (lower is better)
Translates to: QERPALRQLGEVGRSSQPNELSG*VAIEIW
Trigger: CCAGATCTCTATGGCAACCCACCCCGAGAGCTCATT...GGGCTGGCTGCTCCTACCTACCTCGCCGAGCTGTCGGAGGGCTGGACGCTCCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS-3UTR CCA 90 bp CCAGAGGAGCCTGGGAAATGGAGACCGCTCCCTTTGCTGCCACAGCTGGACACAGCTCTGCGCACCGGGTaGAAGGGGCTGAGGACGTAC +
Preference number: 4 (lower is better)
Translates to: PEEPGKWRPLPLLPQLDTALRTG*KGLRTY
Trigger: GTACGTCCTCAGCCCCTTCCACCCGGTGCGCAGAGC...TGTGTCCAGCTGTGGCAGCAAAGGGAGCGGTCTCCATTTCCCAGGCTCCTCTGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp GCCCCCTCCTTCAGCACTGCCAGGAGCGTCCAGCCCTCCGACAGCTCGGCGAGGTCCTTCTCTCATGGTTaGTTACTGGGGCCAAAGGAG +
Preference number: 4 (lower is better)
Translates to: APSFSTARSVQPSDSSARSFSHG*LLGPKE
Trigger: CTCCTTTGGCCCCAGTAACCAACCATGAGAGAAGGA...CCTCGCCGAGCTGTCGGAGGGCTGGACGCTCCTGGCAGTGCTGAAGGAGGGGGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS-3UTR CCA 90 bp ACTTGCCCGCAGTGCCCCCTCCTTCAGCACTGCCAGGAGCGTCCAGCCCTCCGAGCGATTCCAGCATGGTaGACACTTACGGTGGGACTC +
Preference number: 4 (lower is better)
Translates to: TCPQCPLLQHCQERPALRAIPAW*TLTVGL
Trigger: GAGTCCCACCGTAAGTGTCCACCATGCTGGAATCGC...TCGGAGGGCTGGACGCTCCTGGCAGTGCTGAAGGAGGGGGCACTGCGGGCAAGT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS-3UTR CCA 90 bp TCTGAAGACGGTTGGAGCCCCAGTGGGCATCTCCTTGACACACGGCCAGAGGCAGCAGCTGGCTGTGGGTaGCAAGAGCCGCGGGCTTCT +
Preference number: 4 (lower is better)
Translates to: SEDGWSPSGHLLDTRPEAAAGCG*QEPRAS
Trigger: AGAAGCCCGCGGCTCTTGCCACCCACAGCCAGCTGC...TGCCTCTGGCCGTGTGTCAAGGAGATGCCCACTGGGGCTCCAACCGTCTTCAGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp CCTCTCCCATGGGGGATGGATGGCTTGTCACCTTCCAGGTCACAGAACCAGGCCGCAGCTGGCTGTGGGTaGCAAGAGCCGCGGGCTTCT +
Preference number: 4 (lower is better)
Translates to: PLPWGMDGLSPSRSQNQAAAGCG*QEPRAS
Trigger: AGAAGCCCGCGGCTCTTGCCACCCACAGCCAGCTGC...GGCCTGGTTCTGTGACCTGGAAGGTGACAAGCCATCCATCCCCCATGGGAGAGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp TCTGAAGACGGTTGGAGCCCCAGTGGGCATCTCCTTGACACACGGCCAGAGGCAGAGCGGCGATACAGCTaGGCAGCTGGCTGTGGGTGG +
Preference number: 4 (lower is better)
Translates to: SEDGWSPSGHLLDTRPEAERRYS*AAGCGW
Trigger: CCACCCACAGCCAGCTGCCCAGCTGTATCGCCGCTC...TGCCTCTGGCCGTGTGTCAAGGAGATGCCCACTGGGGCTCCAACCGTCTTCAGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp GAACTCTGCCGTGTGGTTCCTCCACCTGGAGGTTCCCCTGTCACCTCCAGAGCTGAGCGGCGATACAGCTaGGCAGCTGGCTGTGGGTGG +
Preference number: 4 (lower is better)
Translates to: ELCRVVPPPGGSPVTSRAERRYS*AAGCGW
Trigger: CCACCCACAGCCAGCTGCCCAGCTGTATCGCCGCTC...AGCTCTGGAGGTGACAGGGGAACCTCCAGGTGGAGGAACCACACGGCAGAGTTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp AGAGGAGCCTGGGAAATGGAGACCGCTCCCTTTGCTGCCACAGCTGGACACAGTCACCTCTGGGGGTGGTaGGGACCTGGGAGCGGCGAT +
Preference number: 4 (lower is better)
Translates to: RGAWEMETAPFAATAGHSHLWGW*GPGSGD
Trigger: ATCGCCGCTCCCAGGTCCCCACCACCCCCAGAGGTG...ACTGTGTCCAGCTGTGGCAGCAAAGGGAGCGGTCTCCATTTCCCAGGCTCCTCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp TCCTCTCCCATGGGGGATGGATGGCTTGTCACCTTCCAGGTCACAGAACCAGGCCTCCGGAAGGCCCGCTaGATGACCGTGGCCGACACC +
Preference number: 4 (lower is better)
Translates to: SSPMGDGWLVTFQVTEPGLRKAR*MTVADT
Trigger: GGTGTCGGCCACGGTCATCCAGCGGGCCTTCCGGAG...GCCTGGTTCTGTGACCTGGAAGGTGACAAGCCATCCATCCCCCATGGGAGAGGA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp GAACTCTGCCGTGTGGTTCCTCCACCTGGAGGTTCCCCTGTCACCTCCAGAGCTCCGGGTGGAAGGGGCTaGGGACGTACAAGGCATTGG +
Preference number: 4 (lower is better)
Translates to: ELCRVVPPPGGSPVTSRAPGGRG*GRTRHW
Trigger: CCAATGCCTTGTACGTCCTCAGCCCCTTCCACCCGG...AGCTCTGGAGGTGACAGGGGAACCTCCAGGTGGAGGAACCACACGGCAGAGTTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp TCTGAAGACGGTTGGAGCCCCAGTGGGCATCTCCTTGACACACGGCCAGAGGCACCGGGTGGAAGGGGCTaGGGACGTACAAGGCATTGG +
Preference number: 4 (lower is better)
Translates to: SEDGWSPSGHLLDTRPEAPGGRG*GRTRHW
Trigger: CCAATGCCTTGTACGTCCTCAGCCCCTTCCACCCGG...TGCCTCTGGCCGTGTGTCAAGGAGATGCCCACTGGGGCTCCAACCGTCTTCAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp GACAGAGTTGCTGTTCAGAGCCATGCGGCGCTGCCTGGCCAGACCCGGCTACTATCTGGGACCGTCTTCTaGGTCCGACTTGGGGAGCCT +
Preference number: 4 (lower is better)
Translates to: DRVAVQSHAALPGQTRLLSGTVF*VRLGEP
Trigger: AGGCTCCCCAAGTCGGACTCAGAAGACGGTCCCAGA...TAGTAGCCGGGTCTGGCCAGGCAGCGCCGCATGGCTCTGAACAGCAACTCTGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp CAGAAGACGCCTAGGATAGTCAGACCCTGGGCTGGGCCCAGATGCCACACTGTCTGCTGCCAGTCTGCCTaGGACGTACTGGCCTCGGCT +
Preference number: 4 (lower is better)
Translates to: QKTPRIVRPWAGPRCHTVCCQSA*DVLASA
Trigger: AGCCGAGGCCAGTACGTCTCAGGCAGACTGGCAGCA...GACAGTGTGGCATCTGGGCCCAGCCCAGGGTCTGACTATCCTAGGCGTCTTCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp AGAGGAGCCTGGGAAATGGAGACCGCTCCCTTTGCTGCCACAGCTGGACACAGTCTCCTCGGATCAGCCTaGGGATGCGGCCGATCCTGG +
Preference number: 4 (lower is better)
Translates to: RGAWEMETAPFAATAGHSLLGSA*GCGRSW
Trigger: CCAGGATCGGCCGCATCCTCAGGCTGATCCGAGGAG...ACTGTGTCCAGCTGTGGCAGCAAAGGGAGCGGTCTCCATTTCCCAGGCTCCTCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp GAGCCATGCGGCGCTGCCTGGCCAGACCCGGCTACTAGGGTGTGCCAGGCCTCTGTCGTTTCCTCCTCTTaGTCCTTCTCTCATGGTTGG +
Preference number: 4 (lower is better)
Translates to: EPCGAAWPDPATRVCQASVVSSS*SFSHGW
Trigger: CCAACCATGAGAGAAGGAGCAAGAGGAGGAAACGAC...AGAGGCCTGGCACACCCTAGTAGCCGGGTCTGGCCAGGCAGCGCCGCATGGCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp GAACTCTGCCGTGTGGTTCCTCCACCTGGAGGTTCCCCTGTCACCTCCAGAGCTGCACCAGCAGCGATGTaGGGTGGCTCTCGCTCTCTC +
Preference number: 4 (lower is better)
Translates to: ELCRVVPPPGGSPVTSRAAPAAM*GGSRSL
Trigger: GAGAGAGCGAGAGCCACCGCACATCGCTGCTGGTGC...AGCTCTGGAGGTGACAGGGGAACCTCCAGGTGGAGGAACCACACGGCAGAGTTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp CAGAAGACGCCTAGGATAGTCAGACCCTGGGCTGGGCCCAGATGCCACACTGTCGCACCAGCAGCGATGTaGGGTGGCTCTCGCTCTCTC +
Preference number: 4 (lower is better)
Translates to: QKTPRIVRPWAGPRCHTVAPAAM*GGSRSL
Trigger: GAGAGAGCGAGAGCCACCGCACATCGCTGCTGGTGC...GACAGTGTGGCATCTGGGCCCAGCCCAGGGTCTGACTATCCTAGGCGTCTTCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp CGGCTACTAGGGTGTGCCAGGCCTCTACCAGCCAGGGTTGCTCTAGCCGCCTCTGGCTGTGAGGTTGTCTaGGCTGAAGGAGCTGAGCAG +
Preference number: 4 (lower is better)
Translates to: RLLGCARPLPARVALAASGCEVV*AEGAEQ
Trigger: CTGCTCAGCTCCTTCAGCGCAGACAACCTCACAGCC...AGAGGCGGCTAGAGCAACCCTGGCTGGTAGAGGCCTGGCACACCCTAGTAGCCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp CGGCTACTAGGGTGTGCCAGGCCTCTACCAGCCAGGGTTGCTCTAGCCGCCTCTTGCGGTAGCAGGTCTTaGGCAGTCTCCACCAGACCT +
Preference number: 4 (lower is better)
Translates to: RLLGCARPLPARVALAASCGSRS*AVSTRP
Trigger: AGGTCTGGTGGAGACTGCGCAAGACCTGCTACCGCA...AGAGGCGGCTAGAGCAACCCTGGCTGGTAGAGGCCTGGCACACCCTAGTAGCCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp GACAGAGTTGCTGTTCAGAGCCATGCGGCGCTGCCTGGCCAGACCCGGCTACTAGAAGAGGATGCCCACTaGTGGGCTCCCACAGTTCCC +
Preference number: 4 (lower is better)
Translates to: DRVAVQSHAALPGQTRLLEEDAH*WAPTVP
Trigger: GGGAACTGTGGGAGCCCAGCAGTGGGCATCCTCTTC...TAGTAGCCGGGTCTGGCCAGGCAGCGCCGCATGGCTCTGAACAGCAACTCTGTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp AGAGGAGCCTGGGAAATGGAGACCGCTCCCTTTGCTGCCACAGCTGGACACAGTGCTCTGCGCACCGGGTaGAAGGGGCTGAGGACGTAC +
Preference number: 4 (lower is better)
Translates to: RGAWEMETAPFAATAGHSALRTG*KGLRTY
Trigger: GTACGTCCTCAGCCCCTTCCACCCGGTGCGCAGAGC...ACTGTGTCCAGCTGTGGCAGCAAAGGGAGCGGTCTCCATTTCCCAGGCTCCTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp CCTCTCCCATGGGGGATGGATGGCTTGTCACCTTCCAGGTCACAGAACCAGGCCGAGAAGGTGGCTCCCTaGAGAGGTGGCCTCTGCGTC +
Preference number: 4 (lower is better)
Translates to: PLPWGMDGLSPSRSQNQAEKVAP*RGGLCV
Trigger: GACGCAGAGGCCACCTCTCCAGGGAGCCACCTTCTC...GGCCTGGTTCTGTGACCTGGAAGGTGACAAGCCATCCATCCCCCATGGGAGAGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp GAACTCTGCCGTGTGGTTCCTCCACCTGGAGGTTCCCCTGTCACCTCCAGAGCTATAGGGCGGAGAAGGTaGCTCCCTGGAGAGGTGGCC +
Preference number: 4 (lower is better)
Translates to: ELCRVVPPPGGSPVTSRAIGRRR*LPGEVA
Trigger: GGCCACCTCTCCAGGGAGCCACCTTCTCCGCCCTAT...AGCTCTGGAGGTGACAGGGGAACCTCCAGGTGGAGGAACCACACGGCAGAGTTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp CCTCTCCCATGGGGGATGGATGGCTTGTCACCTTCCAGGTCACAGAACCAGGCCATAGGGCGGAGAAGGTaGCTCCCTGGAGAGGTGGCC +
Preference number: 4 (lower is better)
Translates to: PLPWGMDGLSPSRSQNQAIGRRR*LPGEVA
Trigger: GGCCACCTCTCCAGGGAGCCACCTTCTCCGCCCTAT...GGCCTGGTTCTGTGACCTGGAAGGTGACAAGCCATCCATCCCCCATGGGAGAGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp GTTGCTGTTCAGAGCCATGCGGCGCTGCCTGGCCAGACCCGGCTACTAGGGTGTACTCAGCCACTGCGATaGGAACACACACAGGCTCGG +
Preference number: 4 (lower is better)
Translates to: VAVQSHAALPGQTRLLGCTQPLR*EHTQAR
Trigger: CCGAGCCTGTGTGTGTTCCCATCGCAGTGGCTGAGT...ACACCCTAGTAGCCGGGTCTGGCCAGGCAGCGCCGCATGGCTCTGAACAGCAAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp AGAGGAGCCTGGGAAATGGAGACCGCTCCCTTTGCTGCCACAGCTGGACACAGTGTGGTCTCTGACACCTaGCTCCAGGCCCTGGGCTCC +
Preference number: 4 (lower is better)
Translates to: RGAWEMETAPFAATAGHSVVSDT*LQALGS
Trigger: GGAGCCCAGGGCCTGGAGCCAGGTGTCAGAGACCAC...ACTGTGTCCAGCTGTGGCAGCAAAGGGAGCGGTCTCCATTTCCCAGGCTCCTCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp CACCCTGTCTGCAGCCAGCCCGGCACCTGTCTTAAGGCTCCAAGGCCATCTGCAGTCCTCCCCGAGGTCTaGGATTTGCTCCAGGAGGTC +
Preference number: 4 (lower is better)
Translates to: HPVCSQPGTCLKAPRPSAVLPEV*DLLQEV
Trigger: GACCTCCTGGAGCAAATCCCAGACCTCGGGGAGGAC...TGCAGATGGCCTTGGAGCCTTAAGACAGGTGCCGGGCTGGCTGCAGACAGGGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS-3UTR CCA 90 bp CTGAAGACGGTTGGAGCCCCAGTGGGCATCTCCTTGACACACGGCCAGAGGCAGGTCCTCCCCGAGGTCTaGGATTTGCTCCAGGAGGTC +
Preference number: 4 (lower is better)
Translates to: LKTVGAPVGISLTHGQRQVLPEV*DLLQEV
Trigger: GACCTCCTGGAGCAAATCCCAGACCTCGGGGAGGAC...CTGCCTCTGGCCGTGTGTCAAGGAGATGCCCACTGGGGCTCCAACCGTCTTCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp GACCCTGGGCTGGGCCCAGATGCCACACTGTCTCCTCTCCCATGGGGGATGGATAGTGAAGCAGTCCTCTaGGTCCTTGACGTCCTCCCC +
Preference number: 4 (lower is better)
Translates to: DPGLGPDATLSPLPWGMDSEAVL*VLDVLP
Trigger: GGGGAGGACGTCAAGGACCCAGAGGACTGCTTCACT...ATCCATCCCCCATGGGAGAGGAGACAGTGTGGCATCTGGGCCCAGCCCAGGGTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR CAA 72 bp TGTCTGAAGACGGTTGGAGCCCCAGTGGGCATCTCCTaGACACACGGCCAGAGGCAGAGACCCCAGAGGAGC +
Preference number: 4 (lower is better)
Translates to: CLKTVGAPVGIS*THGQRQRPQRS
Trigger: GCTCCTCTGGGGTCTCTGCCTCTGGCCGTGTGTCAAGGAGATGCCCACTGGGGCTCCAACCGTCTTCAGACA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp TCCTCTCCCATGGGGGATGGATGGCTTGTCACCTTCCAGGTCACAGAACCAGGCCCAGTGACTCCCGGGTaGACCTACGGAAGCTGCTGG +
Preference number: 4 (lower is better)
Translates to: SSPMGDGWLVTFQVTEPGPVTPG*TYGSCW
Trigger: CCAGCAGCTTCCGTAGGTTCACCCGGGAGTCACTGG...GCCTGGTTCTGTGACCTGGAAGGTGACAAGCCATCCATCCCCCATGGGAGAGGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp CGGCTACTAGGGTGTGCCAGGCCTCTACCAGCCAGGGTTGCTCTAGCCGCCTCTCCTCGTGTTCCTTCTTaGGCATCTCCATGGCCTCCT +
Preference number: 4 (lower is better)
Translates to: RLLGCARPLPARVALAASPRVPS*ASPWPP
Trigger: AGGAGGCCATGGAGATGCTCAAGAAGGAACACGAGG...AGAGGCGGCTAGAGCAACCCTGGCTGGTAGAGGCCTGGCACACCCTAGTAGCCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp AGTTGCTGTTCAGAGCCATGCGGCGCTGCCTGGCCAGACCCGGCTACTAGGGTGATGATTTGGCCAGCTTaGAGACCCGCAGCAGACGGA +
Preference number: 4 (lower is better)
Translates to: SCCSEPCGAAWPDPATRVMIWPA*RPAADG
Trigger: TCCGTCTGCTGCGGGTCTTCAAGCTGGCCAAATCAT...CACCCTAGTAGCCGGGTCTGGCCAGGCAGCGCCGCATGGCTCTGAACAGCAACT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp AGAGGAGCCTGGGAAATGGAGACCGCTCCCTTTGCTGCCACAGCTGGACACAGTTGCTGCCAGTCTGCCTaGGACGTACTGGCCTCGGCT +
Preference number: 4 (lower is better)
Translates to: RGAWEMETAPFAATAGHSCCQSA*DVLASA
Trigger: AGCCGAGGCCAGTACGTCTCAGGCAGACTGGCAGCA...ACTGTGTCCAGCTGTGGCAGCAAAGGGAGCGGTCTCCATTTCCCAGGCTCCTCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp GCCCCCTCCTTCAGCACTGCCAGGAGCGTCCAGCCCTCCGACAGCTCGGCGAGGTCTTGGCCAAGATGTTaGCTTTTTCAGGGCTCTGAT +
Preference number: 4 (lower is better)
Translates to: APSFSTARSVQPSDSSARSWPRC*LFQGSD
Trigger: ATCAGAGCCCTGAAAAAGTCAACATCTTGGCCAAGA...CCTCGCCGAGCTGTCGGAGGGCTGGACGCTCCTGGCAGTGCTGAAGGAGGGGGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS-3UTR TCA 90 bp ACTTGCCCGCAGTGCCCCCTCCTTCAGCACTGCCAGGAGCGTCCAGCCCTCCGAAGAAGTACTTCTGGATaGTGTCGGAGAGGACAGTGC +
Preference number: 4 (lower is better)
Translates to: TCPQCPLLQHCQERPALRRSTSG*CRRGQC
Trigger: GCACTGTCCTCTCCGACATCATCCAGAAGTACTTCT...TCGGAGGGCTGGACGCTCCTGGCAGTGCTGAAGGAGGGGGCACTGCGGGCAAGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS-3UTR GCA 90 bp CACCCTGTCTGCAGCCAGCCCGGCACCTGTCTTAAGGCTCCAAGGCCATCTGCAGCTCTCGGGGTGGGTTaGCATAGAGATCTGGCAGCT +
Preference number: 4 (lower is better)
Translates to: HPVCSQPGTCLKAPRPSAALGVG*HRDLAA
Trigger: AGCTGCCAGATCTCTATGGCAACCCACCCCGAGAGC...TGCAGATGGCCTTGGAGCCTTAAGACAGGTGCCGGGCTGGCTGCAGACAGGGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS-3UTR GCA 90 bp TCTGAAGACGGTTGGAGCCCCAGTGGGCATCTCCTTGACACACGGCCAGAGGCAGTCAGGGTTCTCACCTaGCTTCAGGCACCGGTAGCC +
Preference number: 4 (lower is better)
Translates to: SEDGWSPSGHLLDTRPEAVRVLT*LQAPVA
Trigger: GGCTACCGGTGCCTGAAGGCAGGTGAGAACCCTGAC...TGCCTCTGGCCGTGTGTCAAGGAGATGCCCACTGGGGCTCCAACCGTCTTCAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp CACCCTGTCTGCAGCCAGCCCGGCACCTGTCTTAAGGCTCCAAGGCCATCTGCAAAGAAGTCCATCATGTaGCAGCGGGGCAGCAGGCCA +
Preference number: 4 (lower is better)
Translates to: HPVCSQPGTCLKAPRPSAKKSIM*QRGSRP
Trigger: TGGCCTGCTGCCCCGCTGGCACATGATGGACTTCTT...TGCAGATGGCCTTGGAGCCTTAAGACAGGTGCCGGGCTGGCTGCAGACAGGGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS-3UTR GCA 90 bp TTCTCCTCCCTTGGCCTTGGGACAGGGCCTGCCACATCTCAGAAGCAAGCTACGGAAGGCCCCTTTGGATaGGAGCCAGGGCCAGCTGGA +
Preference number: 4 (lower is better)
Translates to: FSSLGLGTGPATSQKQATEGPFG*EPGPAG
Trigger: TCCAGCTGGCCCTGGCTCGCATCCAAAGGGGCCTTC...CGTAGCTTGCTTCTGAGATGTGGCAGGCCCTGTCCCAAGGCCAAGGGAGGAGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp GACCCTGGGCTGGGCCCAGATGCCACACTGTCTCCTCTCCCATGGGGGATGGATAGGTTGTCCTCCCACTaGGGCTGCTCTTCATACCCT +
Preference number: 4 (lower is better)
Translates to: DPGLGPDATLSPLPWGMDRLSSH*GCSSYP
Trigger: AGGGTATGAAGAGCAGCCGCAGTGGGAGGACAACCT...ATCCATCCCCCATGGGAGAGGAGACAGTGTGGCATCTGGGCCCAGCCCAGGGTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp CGGCTACTAGGGTGTGCCAGGCCTCTACCAGCCAGGGTTGCTCTAGCCGCCTCTAGGTTGTCCTCCCACTaGGGCTGCTCTTCATACCCT +
Preference number: 4 (lower is better)
Translates to: RLLGCARPLPARVALAASRLSSH*GCSSYP
Trigger: AGGGTATGAAGAGCAGCCGCAGTGGGAGGACAACCT...AGAGGCGGCTAGAGCAACCCTGGCTGGTAGAGGCCTGGCACACCCTAGTAGCCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp GTTGCTGTTCAGAGCCATGCGGCGCTGCCTGGCCAGACCCGGCTACTAGGGTGTAAGAGGAAGGAAGCATaGTTCACCGAGCGCTGCAGG +
Preference number: 4 (lower is better)
Translates to: VAVQSHAALPGQTRLLGCKRKEA*FTERCR
Trigger: CCTGCAGCGCTCGGTGAAGCATGCTTCCTTCCTCTT...ACACCCTAGTAGCCGGGTCTGGCCAGGCAGCGCCGCATGGCTCTGAACAGCAAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp CACAGAACTCTGCCGTGTGGTTCCTCCACCTGGAGGTTCCCCTGTCACCTCCAGTGGAGAGGGGACCGCTaGGCCGGGAGAAGTTCTCAT +
Preference number: 4 (lower is better)
Translates to: HRTLPCGSSTWRFPCHLQWRGDR*AGRSSH
Trigger: ATGAGAACTTCTCCCGGCGCAGCGGTCCCCTCTCCA...CTGGAGGTGACAGGGGAACCTCCAGGTGGAGGAACCACACGGCAGAGTTCTGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp ACTCGCCCACTCGCGTGTGTGAGTGAAGTGCTTAGGCCTTCCTGGCTCCTCAGCTGGAGAGGGGACCGCTaGGCCGGGAGAAGTTCTCAT +
Preference number: 4 (lower is better)
Translates to: TRPLACVSEVLRPSWLLSWRGDR*AGRSSH
Trigger: ATGAGAACTTCTCCCGGCGCAGCGGTCCCCTCTCCA...GCTGAGGAGCCAGGAAGGCCTAAGCACTTCACTCACACACGCGAGTGGGCGAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp GACCCTGGGCTGGGCCCAGATGCCACACTGTCTCCTCTCCCATGGGGGATGGATGATGGACATCCAGAGTaGGCAGCACTCCCAGATGAG +
Preference number: 4 (lower is better)
Translates to: DPGLGPDATLSPLPWGMDDGHPE*AALPDE
Trigger: CTCATCTGGGAGTGCTGCCCACTCTGGATGTCCATC...ATCCATCCCCCATGGGAGAGGAGACAGTGTGGCATCTGGGCCCAGCCCAGGGTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp GCCCCCTCCTTCAGCACTGCCAGGAGCGTCCAGCCCTCCGACAGCTCGGCGAGGCTGGAAGTAGTAGTATaGGTCAAGGGCGATGATCTT +
Preference number: 4 (lower is better)
Translates to: APSFSTARSVQPSDSSARLEVVV*VKGDDL
Trigger: AAGATCATCGCCCTTGACCCATACTACTACTTCCAG...CCTCGCCGAGCTGTCGGAGGGCTGGACGCTCCTGGCAGTGCTGAAGGAGGGGGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS-3UTR CCA 90 bp TCTGAAGACGGTTGGAGCCCCAGTGGGCATCTCCTTGACACACGGCCAGAGGCAATACAGCTGGGCAGCTaGCTGTGGGTGGCAAGAGCC +
Preference number: 4 (lower is better)
Translates to: SEDGWSPSGHLLDTRPEAIQLGS*LWVARA
Trigger: GGCTCTTGCCACCCACAGCCAGCTGCCCAGCTGTAT...TGCCTCTGGCCGTGTGTCAAGGAGATGCCCACTGGGGCTCCAACCGTCTTCAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp CCTCTCCCATGGGGGATGGATGGCTTGTCACCTTCCAGGTCACAGAACCAGGCCATACAGCTGGGCAGCTaGCTGTGGGTGGCAAGAGCC +
Preference number: 4 (lower is better)
Translates to: PLPWGMDGLSPSRSQNQAIQLGS*LWVARA
Trigger: GGCTCTTGCCACCCACAGCCAGCTGCCCAGCTGTAT...GGCCTGGTTCTGTGACCTGGAAGGTGACAAGCCATCCATCCCCCATGGGAGAGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp CCCTTGGGCCCCAACATTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCGCCTTCTCCACCTCTaGGGGTGGTGGGGACCTGGG +
Preference number: 4 (lower is better)
Translates to: PLGPNINTLTGEEGRPGQRLLHL*GWWGPG
Trigger: CCCAGGTCCCCACCACCCCCAGAGGTGGAGAAGGCG...CTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAATGTTGGGGCCCAAGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp TTCTCCTCCCTTGGCCTTGGGACAGGGCCTGCCACATCTCAGAAGCAAGCTACGTGTTTCCTTGCGGGCTaGGGGCGCCTTCTCCACCTC +
Preference number: 4 (lower is better)
Translates to: FSSLGLGTGPATSQKQATCFLAG*GRLLHL
Trigger: GAGGTGGAGAAGGCGCCCCCAGCCCGCAAGGAAACA...CGTAGCTTGCTTCTGAGATGTGGCAGGCCCTGTCCCAAGGCCAAGGGAGGAGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp ACTTGCCCGCAGTGCCCCCTCCTTCAGCACTGCCAGGAGCGTCCAGCCCTCCGACCACCAGACACAACTTaGGATTCCTGCTGTTTGCTG +
Preference number: 4 (lower is better)
Translates to: TCPQCPLLQHCQERPALRPPDTT*DSCCLL
Trigger: CAGCAAACAGCAGGAATCCCAAGTTGTGTCTGGTGG...TCGGAGGGCTGGACGCTCCTGGCAGTGCTGAAGGAGGGGGCACTGCGGGCAAGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS-3UTR CCA 90 bp GACAGAGTTGCTGTTCAGAGCCATGCGGCGCTGCCTGGCCAGACCCGGCTACTACGGCTTCAGAGGATGTaGTCTCTGACACCTGGCTCC +
Preference number: 4 (lower is better)
Translates to: DRVAVQSHAALPGQTRLLRLQRM*SLTPGS
Trigger: GGAGCCAGGTGTCAGAGACCACATCCTCTGAAGCCG...TAGTAGCCGGGTCTGGCCAGGCAGCGCCGCATGGCTCTGAACAGCAACTCTGTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp GCTCTGAGAGCAGAGTTCTCCATTGACACCTGCTCAGGGTTAGGAAGAGGCCGTCTCGATGGCCGCCAGTaGCTCCCGGGTGAACCTACG +
Preference number: 4 (lower is better)
Translates to: ALRAEFSIDTCSGLGRGRLDGRQ*LPGEPT
Trigger: CGTAGGTTCACCCGGGAGTCACTGGCGGCCATCGAG...ACGGCCTCTTCCTAACCCTGAGCAGGTGTCAATGGAGAACTCTGCTCTCAGAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp CGGCTACTAGGGTGTGCCAGGCCTCTACCAGCCAGGGTTGCTCTAGCCGCCTCTTTGCCATTGAGGACATaGCCAGGAGCTGAGGTTCCA +
Preference number: 4 (lower is better)
Translates to: RLLGCARPLPARVALAASLPLRT*PGAEVP
Trigger: TGGAACCTCAGCTCCTGGTCATGTCCTCAATGGCAA...AGAGGCGGCTAGAGCAACCCTGGCTGGTAGAGGCCTGGCACACCCTAGTAGCCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp TCCTCTCCCATGGGGGATGGATGGCTTGTCACCTTCCAGGTCACAGAACCAGGCAGAGGATGTGGTCTCTaGCACCTGGCTCCAGGCCCT +
Preference number: 4 (lower is better)
Translates to: SSPMGDGWLVTFQVTEPGRGCGL*HLAPGP
Trigger: AGGGCCTGGAGCCAGGTGTCAGAGACCACATCCTCT...GCCTGGTTCTGTGACCTGGAAGGTGACAAGCCATCCATCCCCCATGGGAGAGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp CAGGAGCGTCCAGCCCTCCGACAGCTCGGCGAGGTAGGTAGGAGCAGCCAGCCCACACAAAGACATAGGTaGACATCTTGTCGGCGTACT +
Preference number: 4 (lower is better)
Translates to: QERPALRQLGEVGRSSQPTQRHR*TSCRRT
Trigger: AGTACGCCGACAAGATGTTCACCTATGTCTTTGTGT...GGGCTGGCTGCTCCTACCTACCTCGCCGAGCTGTCGGAGGGCTGGACGCTCCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS-3UTR TCA 90 bp CCGCAGTGCCCCCTCCTTCAGCACTGCCAGGAGCGTCCAGCCCTCCGACAGCTCACACAAAGACATAGGTaGACATCTTGTCGGCGTACT +
Preference number: 4 (lower is better)
Translates to: PQCPLLQHCQERPALRQLTQRHR*TSCRRT
Trigger: AGTACGCCGACAAGATGTTCACCTATGTCTTTGTGT...GAGCTGTCGGAGGGCTGGACGCTCCTGGCAGTGCTGAAGGAGGGGGCACTGCGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS-3UTR TCA 90 bp CACAGAACTCTGCCGTGTGGTTCCTCCACCTGGAGGTTCCCCTGTCACCTCCAGGTGTCCTCAGGGACTTaGTGGGACCCATCTCGGCAA +
Preference number: 4 (lower is better)
Translates to: HRTLPCGSSTWRFPCHLQVSSGT*WDPSRQ
Trigger: TTGCCGAGATGGGTCCCATCAAGTCCCTGAGGACAC...CTGGAGGTGACAGGGGAACCTCCAGGTGGAGGAACCACACGGCAGAGTTCTGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp GAACTCTGCCGTGTGGTTCCTCCACCTGGAGGTTCCCCTGTCACCTCCAGAGCTGTGTCCTCAGGGACTTaGTGGGACCCATCTCGGCAA +
Preference number: 4 (lower is better)
Translates to: ELCRVVPPPGGSPVTSRAVSSGT*WDPSRQ
Trigger: TTGCCGAGATGGGTCCCATCAAGTCCCTGAGGACAC...AGCTCTGGAGGTGACAGGGGAACCTCCAGGTGGAGGAACCACACGGCAGAGTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp CGGCTACTAGGGTGTGCCAGGCCTCTACCAGCCAGGGTTGCTCTAGCCGCCTCTACTCTCCAGTCACGTTaGAGGACTCACACTCGCTCT +
Preference number: 4 (lower is better)
Translates to: RLLGCARPLPARVALAASTLQSR*RTHTRS
Trigger: AGAGCGAGTGTGAGTCCTTCAACGTGACTGGAGAGT...AGAGGCGGCTAGAGCAACCCTGGCTGGTAGAGGCCTGGCACACCCTAGTAGCCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp CCTCTCCCATGGGGGATGGATGGCTTGTCACCTTCCAGGTCACAGAACCAGGCCTCATCATGTAGGCAATaGGTCCCTCTCGCTCGGGGG +
Preference number: 4 (lower is better)
Translates to: PLPWGMDGLSPSRSQNQASSCRQ*VPLARG
Trigger: CCCCCGAGCGAGAGGGACTCATTGCCTACATGATGA...GGCCTGGTTCTGTGACCTGGAAGGTGACAAGCCATCCATCCCCCATGGGAGAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp GCTCTGAGAGCAGAGTTCTCCATTGACACCTGCTCAGGGTTAGGAAGAGGCCGTTCTTCACAGCCGCTCTaGGCACCGGGTGGAAGGGGC +
Preference number: 4 (lower is better)
Translates to: ALRAEFSIDTCSGLGRGRSSQPL*APGGRG
Trigger: GCCCCTTCCACCCGGTGCGCAGAGCGGCTGTGAAGA...ACGGCCTCTTCCTAACCCTGAGCAGGTGTCAATGGAGAACTCTGCTCTCAGAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp GACAGAGTTGCTGTTCAGAGCCATGCGGCGCTGCCTGGCCAGACCCGGCTACTAAGGAAGGTGAACGCATaGAGGCAGAAGCCTCGAGCT +
Preference number: 4 (lower is better)
Translates to: DRVAVQSHAALPGQTRLLRKVNA*RQKPRA
Trigger: AGCTCGAGGCTTCTGCCTGCATGCGTTCACCTTCCT...TAGTAGCCGGGTCTGGCCAGGCAGCGCCGCATGGCTCTGAACAGCAACTCTGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp CACCCTGTCTGCAGCCAGCCCGGCACCTGTCTTAAGGCTCCAAGGCCATCTGCAGGAGGACTCGGAAGGTaGGTAAGGCTGAGACATTGC +
Preference number: 4 (lower is better)
Translates to: HPVCSQPGTCLKAPRPSAGGLGR*VRLRHC
Trigger: GCAATGTCTCAGCCTTACGCACCTTCCGAGTCCTCC...TGCAGATGGCCTTGGAGCCTTAAGACAGGTGCCGGGCTGGCTGCAGACAGGGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065196.13
CDS-3UTR GCA 90 bp AGTTGCTGTTCAGAGCCATGCGGCGCTGCCTGGCCAGACCCGGCTACTAGGGTGTTACGCACGCACTTGTaGCTCAGGTTGCCCATGAAG +
Preference number: 4 (lower is better)
Translates to: SCCSEPCGAAWPDPATRVLRTHL*LRLPMK
Trigger: CTTCATGGGCAACCTGAGGCACAAGTGCGTGCGTAA...CACCCTAGTAGCCGGGTCTGGCCAGGCAGCGCCGCATGGCTCTGAACAGCAACT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp GTTGCTGTTCAGAGCCATGCGGCGCTGCCTGGCCAGACCCGGCTACTAGGGTGTCATGTAGATCTTTCCTaGGGACCTCAGGGTCTGCTG +
Preference number: 4 (lower is better)
Translates to: VAVQSHAALPGQTRLLGCHVDLS*GPQGLL
Trigger: CAGCAGACCCTGAGGTCCGCAGGAAAGATCTACATG...ACACCCTAGTAGCCGGGTCTGGCCAGGCAGCGCCGCATGGCTCTGAACAGCAAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp CGGCTACTAGGGTGTGCCAGGCCTCTACCAGCCAGGGTTGCTCTAGCCGCCTCTCATGTAGATCTTTCCTaGGGACCTCAGGGTCTGCTG +
Preference number: 4 (lower is better)
Translates to: RLLGCARPLPARVALAASHVDLS*GPQGLL
Trigger: CAGCAGACCCTGAGGTCCGCAGGAAAGATCTACATG...AGAGGCGGCTAGAGCAACCCTGGCTGGTAGAGGCCTGGCACACCCTAGTAGCCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp CACAGAACTCTGCCGTGTGGTTCCTCCACCTGGAGGTTCCCCTGTCACCTCCAGAAGAAGTCCATCATGTaGCAGCGGGGCAGCAGGCCA +
Preference number: 4 (lower is better)
Translates to: HRTLPCGSSTWRFPCHLQKKSIM*QRGSRP
Trigger: TGGCCTGCTGCCCCGCTGGCACATGATGGACTTCTT...CTGGAGGTGACAGGGGAACCTCCAGGTGGAGGAACCACACGGCAGAGTTCTGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp TCTGAAGACGGTTGGAGCCCCAGTGGGCATCTCCTTGACACACGGCCAGAGGCAGGCTGTGAGGTTGTCTaGGCTGAAGGAGCTGAGCAG +
Preference number: 4 (lower is better)
Translates to: SEDGWSPSGHLLDTRPEAGCEVV*AEGAEQ
Trigger: CTGCTCAGCTCCTTCAGCGCAGACAACCTCACAGCC...TGCCTCTGGCCGTGTGTCAAGGAGATGCCCACTGGGGCTCCAACCGTCTTCAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp TCTAGAAAAGGAGGCCATGCTAAGCCAAGGACTCGGGACTCGATTGCCCCTCCCGAAGGCCCCTTTGGATaGGAGCCAGGGCCAGCTGGA +
Preference number: 4 (lower is better)
Translates to: SRKGGHAKPRTRDSIAPPEGPFG*EPGPAG
Trigger: TCCAGCTGGCCCTGGCTCGCATCCAAAGGGGCCTTC...GGGAGGGGCAATCGAGTCCCGAGTCCTTGGCTTAGCATGGCCTCCTTTTCTAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS-3UTR GCA 90 bp GAACTCTGCCGTGTGGTTCCTCCACCTGGAGGTTCCCCTGTCACCTCCAGAGCTCTCTTGCTGCCAGTCTaGCTGAGACGTACTGGCCTC +
Preference number: 4 (lower is better)
Translates to: ELCRVVPPPGGSPVTSRALLLPV*LRRTGL
Trigger: GAGGCCAGTACGTCTCAGGCAGACTGGCAGCAAGAG...AGCTCTGGAGGTGACAGGGGAACCTCCAGGTGGAGGAACCACACGGCAGAGTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp TCTGAAGACGGTTGGAGCCCCAGTGGGCATCTCCTTGACACACGGCCAGAGGCATGCGGTAGCAGGTCTTaGGCAGTCTCCACCAGACCT +
Preference number: 4 (lower is better)
Translates to: SEDGWSPSGHLLDTRPEACGSRS*AVSTRP
Trigger: AGGTCTGGTGGAGACTGCGCAAGACCTGCTACCGCA...TGCCTCTGGCCGTGTGTCAAGGAGATGCCCACTGGGGCTCCAACCGTCTTCAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp CAGAAGACGCCTAGGATAGTCAGACCCTGGGCTGGGCCCAGATGCCACACTGTCTCCTCCCACTGCGGCTaGTCTTCATACCCTCTGGAG +
Preference number: 4 (lower is better)
Translates to: QKTPRIVRPWAGPRCHTVSSHCG*SSYPLE
Trigger: CTCCAGAGGGTATGAAGAGCAGCCGCAGTGGGAGGA...GACAGTGTGGCATCTGGGCCCAGCCCAGGGTCTGACTATCCTAGGCGTCTTCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp CAGGAGCGTCCAGCCCTCCGACAGCTCGGCGAGGTAGGTAGGAGCAGCCAGCCCGTAACATCGAAGGCCTaGTTGGTCACAATGTCGAAT +
Preference number: 4 (lower is better)
Translates to: QERPALRQLGEVGRSSQPVTSKA*LVTMSN
Trigger: ATTCGACATTGTGACCAAGCAGGCCTTCGATGTTAC...GGGCTGGCTGCTCCTACCTACCTCGCCGAGCTGTCGGAGGGCTGGACGCTCCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS-3UTR GCA 90 bp CCTCTCCCATGGGGGATGGATGGCTTGTCACCTTCCAGGTCACAGAACCAGGCCTGTCCATACAGTGGATaGGGTCCCCGCTCACCATGG +
Preference number: 4 (lower is better)
Translates to: PLPWGMDGLSPSRSQNQACPYSG*GPRSPW
Trigger: CCATGGTGAGCGGGGACCGCATCCACTGTATGGACA...GGCCTGGTTCTGTGACCTGGAAGGTGACAAGCCATCCATCCCCCATGGGAGAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp CCCTTGGGCCCCAACATTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCCATGCGCTTCTCGATaGCCGCCAGTGACTCCCGGG +
Preference number: 4 (lower is better)
Translates to: PLGPNINTLTGEEGRPGQPCASR*PPVTPG
Trigger: CCCGGGAGTCACTGGCGGCCATCGAGAAGCGCATGG...CTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAATGTTGGGGCCCAAGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp CTGCCTTCCTCGAGCCCTTGGGCCCCAACATTAATACTCTTACAGGAGAGGAAGGGGAGCCTCCTCCTCTaGCAGGCCCTCACGGCTCTC +
Preference number: 4 (lower is better)
Translates to: LPSSSPWAPTLILLQERKGSLLL*QALTAL
Trigger: GAGAGCCGTGAGGGCCTGCCAGAGGAGGAGGCTCCC...CTTCCTCTCCTGTAAGAGTATTAATGTTGGGGCCCAAGGGCTCGAGGAAGGCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp GACCCTGGGCTGGGCCCAGATGCCACACTGTCTCCTCTCCCATGGGGGATGGATGATCTGGCAGCTTTTTaGAGGCCTGTAGGTCCAGCT +
Preference number: 4 (lower is better)
Translates to: DPGLGPDATLSPLPWGMDDLAAF*RPVGPA
Trigger: AGCTGGACCTACAGGCCTCCAAAAAGCTGCCAGATC...ATCCATCCCCCATGGGAGAGGAGACAGTGTGGCATCTGGGCCCAGCCCAGGGTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp GAACTCTGCCGTGTGGTTCCTCCACCTGGAGGTTCCCCTGTCACCTCCAGAGCTCCGTCTCGGCGATGGTaGCTTGGTTTTGCTCCTCGT +
Preference number: 4 (lower is better)
Translates to: ELCRVVPPPGGSPVTSRAPSRRW*LGFAPR
Trigger: ACGAGGAGCAAAACCAAGCCACCATCGCCGAGACGG...AGCTCTGGAGGTGACAGGGGAACCTCCAGGTGGAGGAACCACACGGCAGAGTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp CCAGAGGAGCCTGGGAAATGGAGACCGCTCCCTTTGCTGCCACAGCTGGACACACTTCTGAGTCCGACTTaGGGAGCCTGTCATCTCCGC +
Preference number: 4 (lower is better)
Translates to: PEEPGKWRPLPLLPQLDTLLSPT*GACHLR
Trigger: GCGGAGATGACAGGCTCCCCAAGTCGGACTCAGAAG...TGTGTCCAGCTGTGGCAGCAAAGGGAGCGGTCTCCATTTCCCAGGCTCCTCTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp TTCTCCTCCCTTGGCCTTGGGACAGGGCCTGCCACATCTCAGAAGCAAGCTACGAGCAGCGATGTGCGGTaGCTCTCGCTCTCTCCTGCT +
Preference number: 4 (lower is better)
Translates to: FSSLGLGTGPATSQKQATSSDVR*LSLSPA
Trigger: AGCAGGAGAGAGCGAGAGCCACCGCACATCGCTGCT...CGTAGCTTGCTTCTGAGATGTGGCAGGCCCTGTCCCAAGGCCAAGGGAGGAGAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp CCCTTGGGCCCCAACATTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGGCAGCTGGCTGTGGGTaGCAAGAGCCGCGGGCTTCT +
Preference number: 4 (lower is better)
Translates to: PLGPNINTLTGEEGRPGQAAGCG*QEPRAS
Trigger: AGAAGCCCGCGGCTCTTGCCACCCACAGCCAGCTGC...CTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAATGTTGGGGCCCAAGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp CTGCCTTCCTCGAGCCCTTGGGCCCCAACATTAATACTCTTACAGGAGAGGAAGCGCCTTCTCCACCTCTaGGGGTGGTGGGGACCTGGG +
Preference number: 4 (lower is better)
Translates to: LPSSSPWAPTLILLQERKRLLHL*GWWGPG
Trigger: CCCAGGTCCCCACCACCCCCAGAGGTGGAGAAGGCG...CTTCCTCTCCTGTAAGAGTATTAATGTTGGGGCCCAAGGGCTCGAGGAAGGCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp CTGAAGACGGTTGGAGCCCCAGTGGGCATCTCCTTGACACACGGCCAGAGGCAGAGGTCCCCTTCGGTCTaGTTGATGCACCTACCGAAC +
Preference number: 4 (lower is better)
Translates to: LKTVGAPVGISLTHGQRQRSPSV*LMHLPN
Trigger: GTTCGGTAGGTGCATCAACCAGACCGAAGGGGACCT...CTGCCTCTGGCCGTGTGTCAAGGAGATGCCCACTGGGGCTCCAACCGTCTTCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp ACTCGCCCACTCGCGTGTGTGAGTGAAGTGCTTAGGCCTTCCTGGCTCCTCAGCACGGTGGGAAGGACGTaGAGGAGATGGAAGAGCTGG +
Preference number: 4 (lower is better)
Translates to: TRPLACVSEVLRPSWLLSTVGRT*RRWKSW
Trigger: CCAGCTCTTCCATCTCCTCCACGTCCTTCCCACCGT...GCTGAGGAGCCAGGAAGGCCTAAGCACTTCACTCACACACGCGAGTGGGCGAGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp CCCTTGGGCCCCAACATTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCCAGTGACTCCCGGGTaGACCTACGGAAGCTGCTGG +
Preference number: 4 (lower is better)
Translates to: PLGPNINTLTGEEGRPGQPVTPG*TYGSCW
Trigger: CCAGCAGCTTCCGTAGGTTCACCCGGGAGTCACTGG...CTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAATGTTGGGGCCCAAGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp GTGAGCGAGGCTGCCTTCCTCGAGCCCTTGGGCCCCAACATTAATACTCTTACACCGGGTGGAAGGGGCTaGGGACGTACAAGGCATTGG +
Preference number: 4 (lower is better)
Translates to: VSEAAFLEPLGPNINTLTPGGRG*GRTRHW
Trigger: CCAATGCCTTGTACGTCCTCAGCCCCTTCCACCCGG...TGTAAGAGTATTAATGTTGGGGCCCAAGGGCTCGAGGAAGGCAGCCTCGCTCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp CCCTTGGGCCCCAACATTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGGGTCCCGGAGGAAGGTaGACGCATGCAGGCAGAAGC +
Preference number: 4 (lower is better)
Translates to: PLGPNINTLTGEEGRPGQGPGGR*THAGRS
Trigger: GCTTCTGCCTGCATGCGTTCACCTTCCTCCGGGACC...CTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAATGTTGGGGCCCAAGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp GCAGAGTTCTCCATTGACACCTGCTCAGGGTTAGGAAGAGGCCGTGTGAACTGCGGTCCCGGAGGAAGGTaGACGCATGCAGGCAGAAGC +
Preference number: 4 (lower is better)
Translates to: AEFSIDTCSGLGRGRVNCGPGGR*THAGRS
Trigger: GCTTCTGCCTGCATGCGTTCACCTTCCTCCGGGACC...GCAGTTCACACGGCCTCTTCCTAACCCTGAGCAGGTGTCAATGGAGAACTCTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp GACAGAGTTGCTGTTCAGAGCCATGCGGCGCTGCCTGGCCAGACCCGGCTACTACCGTGGTGCCATTCTTaGGTAGGTAATTGGCTGGGT +
Preference number: 4 (lower is better)
Translates to: DRVAVQSHAALPGQTRLLPWCHS*VGNWLG
Trigger: ACCCAGCCAATTACCTACTCAAGAATGGCACCACGG...TAGTAGCCGGGTCTGGCCAGGCAGCGCCGCATGGCTCTGAACAGCAACTCTGTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp CTGAAGACGGTTGGAGCCCCAGTGGGCATCTCCTTGACACACGGCCAGAGGCAGTTGCCATTGAGGACATaGCCAGGAGCTGAGGTTCCA +
Preference number: 4 (lower is better)
Translates to: LKTVGAPVGISLTHGQRQLPLRT*PGAEVP
Trigger: TGGAACCTCAGCTCCTGGTCATGTCCTCAATGGCAA...CTGCCTCTGGCCGTGTGTCAAGGAGATGCCCACTGGGGCTCCAACCGTCTTCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp GACAGAGTTGCTGTTCAGAGCCATGCGGCGCTGCCTGGCCAGACCCGGCTACTACAGCAAACGGGTCCATaGCCACGAACTTCACCTTCT +
Preference number: 4 (lower is better)
Translates to: DRVAVQSHAALPGQTRLLQQTGP*PRTSPS
Trigger: AGAAGGTGAAGTTCGTGGTCATGGACCCGTTTGCTG...TAGTAGCCGGGTCTGGCCAGGCAGCGCCGCATGGCTCTGAACAGCAACTCTGTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp CAGAAGACGCCTAGGATAGTCAGACCCTGGGCTGGGCCCAGATGCCACACTGTCTCGGTGCCTCAGCTCTaGGTAGTTCTTGCCGAAGAG +
Preference number: 4 (lower is better)
Translates to: QKTPRIVRPWAGPRCHTVSVPQL*VVLAEE
Trigger: CTCTTCGGCAAGAACTACTCAGAGCTGAGGCACCGA...GACAGTGTGGCATCTGGGCCCAGCCCAGGGTCTGACTATCCTAGGCGTCTTCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp CCCTTGGGCCCCAACATTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGAGTCCTCTGGGTCCTTaGCGTCCTCCCCGAGGTCTG +
Preference number: 4 (lower is better)
Translates to: PLGPNINTLTGEEGRPGQSPLGP*RPPRGL
Trigger: CAGACCTCGGGGAGGACGTCAAGGACCCAGAGGACT...CTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAATGTTGGGGCCCAAGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp AGAGGAGCCTGGGAAATGGAGACCGCTCCCTTTGCTGCCACAGCTGGACACAGTTGTTGGCCACGAGGCTaGCCAGTGAGACGTCCACAA +
Preference number: 4 (lower is better)
Translates to: RGAWEMETAPFAATAGHSCWPRG*PVRRPQ
Trigger: TTGTGGACGTCTCACTGGTCAGCCTCGTGGCCAACA...ACTGTGTCCAGCTGTGGCAGCAAAGGGAGCGGTCTCCATTTCCCAGGCTCCTCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp CTGAAGACGGTTGGAGCCCCAGTGGGCATCTCCTTGACACACGGCCAGAGGCAGTGTTCCAGCTGTTGGTaGAGTAATAGTGGCGCAGGG +
Preference number: 4 (lower is better)
Translates to: LKTVGAPVGISLTHGQRQCSSCW*SNSGAG
Trigger: CCCTGCGCCACTATTACTTCACCAACAGCTGGAACA...CTGCCTCTGGCCGTGTGTCAAGGAGATGCCCACTGGGGCTCCAACCGTCTTCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp ACTCGCCCACTCGCGTGTGTGAGTGAAGTGCTTAGGCCTTCCTGGCTCCTCAGCTACGGAAGCTGCTGGTaGCCCGAGGTAACAGGAAGT +
Preference number: 4 (lower is better)
Translates to: TRPLACVSEVLRPSWLLSYGSCW*PEVTGS
Trigger: ACTTCCTGTTACCTCGGGGCACCAGCAGCTTCCGTA...GCTGAGGAGCCAGGAAGGCCTAAGCACTTCACTCACACACGCGAGTGGGCGAGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp ACTCGCCCACTCGCGTGTGTGAGTGAAGTGCTTAGGCCTTCCTGGCTCCTCAGCAGGAAGGTGAACGCATaGAGGCAGAAGCCTCGAGCT +
Preference number: 4 (lower is better)
Translates to: TRPLACVSEVLRPSWLLSRKVNA*RQKPRA
Trigger: AGCTCGAGGCTTCTGCCTGCATGCGTTCACCTTCCT...GCTGAGGAGCCAGGAAGGCCTAAGCACTTCACTCACACACGCGAGTGGGCGAGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp GACAGAGTTGCTGTTCAGAGCCATGCGGCGCTGCCTGGCCAGACCCGGCTACTATTACGCACGCACTTGTaGCTCAGGTTGCCCATGAAG +
Preference number: 4 (lower is better)
Translates to: DRVAVQSHAALPGQTRLLLRTHL*LRLPMK
Trigger: CTTCATGGGCAACCTGAGGCACAAGTGCGTGCGTAA...TAGTAGCCGGGTCTGGCCAGGCAGCGCCGCATGGCTCTGAACAGCAACTCTGTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp CACCCTGTCTGCAGCCAGCCCGGCACCTGTCTTAAGGCTCCAAGGCCATCTGCAACTCTTCCTCCTCCGTaGCAAGGCTGTTCTCCTCAT +
Preference number: 4 (lower is better)
Translates to: HPVCSQPGTCLKAPRPSATLPPP*QGCSPH
Trigger: ATGAGGAGAACAGCCTTGGCACGGAGGAGGAAGAGT...TGCAGATGGCCTTGGAGCCTTAAGACAGGTGCCGGGCTGGCTGCAGACAGGGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS-3UTR GCA 90 bp ACTCGCCCACTCGCGTGTGTGAGTGAAGTGCTTAGGCCTTCCTGGCTCCTCAGCTTGCTCCAGGAGGTCTaGGGTGTTGGTCATGTCAGC +
Preference number: 4 (lower is better)
Translates to: TRPLACVSEVLRPSWLLSLLQEV*GVGHVS
Trigger: GCTGACATGACCAACACCGCAGACCTCCTGGAGCAA...GCTGAGGAGCCAGGAAGGCCTAAGCACTTCACTCACACACGCGAGTGGGCGAGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp CCTCTCCCATGGGGGATGGATGGCTTGTCACCTTCCAGGTCACAGAACCAGGCCTTAAATGTCGCCACCTaGAGCAGGGCCAGGTACCCA +
Preference number: 4 (lower is better)
Translates to: PLPWGMDGLSPSRSQNQALNVAT*SRARYP
Trigger: TGGGTACCTGGCCCTGCTGCAGGTGGCGACATTTAA...GGCCTGGTTCTGTGACCTGGAAGGTGACAAGCCATCCATCCCCCATGGGAGAGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp CAGAAGACGCCTAGGATAGTCAGACCCTGGGCTGGGCCCAGATGCCACACTGTCTTAAATGTCGCCACCTaGAGCAGGGCCAGGTACCCA +
Preference number: 4 (lower is better)
Translates to: QKTPRIVRPWAGPRCHTVLNVAT*SRARYP
Trigger: TGGGTACCTGGCCCTGCTGCAGGTGGCGACATTTAA...GACAGTGTGGCATCTGGGCCCAGCCCAGGGTCTGACTATCCTAGGCGTCTTCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp GCTCTGAGAGCAGAGTTCTCCATTGACACCTGCTCAGGGTTAGGAAGAGGCCGTGGTTGGGCTTGGCGATaGGGAGTGGCTCAGACAGGG +
Preference number: 4 (lower is better)
Translates to: ALRAEFSIDTCSGLGRGRGWAWR*GVAQTG
Trigger: CCCTGTCTGAGCCACTCCGCATCGCCAAGCCCAACC...ACGGCCTCTTCCTAACCCTGAGCAGGTGTCAATGGAGAACTCTGCTCTCAGAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp GCAGAGTTCTCCATTGACACCTGCTCAGGGTTAGGAAGAGGCCGTGTGAACTGCGGTTGGGCTTGGCGATaGGGAGTGGCTCAGACAGGG +
Preference number: 4 (lower is better)
Translates to: AEFSIDTCSGLGRGRVNCGWAWR*GVAQTG
Trigger: CCCTGTCTGAGCCACTCCGCATCGCCAAGCCCAACC...GCAGTTCACACGGCCTCTTCCTAACCCTGAGCAGGTGTCAATGGAGAACTCTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp CCCTTGGGCCCCAACATTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGGGTTGGGCTTGGCGATaGGGAGTGGCTCAGACAGGG +
Preference number: 4 (lower is better)
Translates to: PLGPNINTLTGEEGRPGQGWAWR*GVAQTG
Trigger: CCCTGTCTGAGCCACTCCGCATCGCCAAGCCCAACC...CTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAATGTTGGGGCCCAAGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp CCTCTCCCATGGGGGATGGATGGCTTGTCACCTTCCAGGTCACAGAACCAGGCCAAGAGGAAGGAAGCATaGTTCACCGAGCGCTGCAGG +
Preference number: 4 (lower is better)
Translates to: PLPWGMDGLSPSRSQNQAKRKEA*FTERCR
Trigger: CCTGCAGCGCTCGGTGAAGCATGCTTCCTTCCTCTT...GGCCTGGTTCTGTGACCTGGAAGGTGACAAGCCATCCATCCCCCATGGGAGAGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp CCAGAGGAGCCTGGGAAATGGAGACCGCTCCCTTTGCTGCCACAGCTGGACACAAAGAGGAAGGAAGCATaGTTCACCGAGCGCTGCAGG +
Preference number: 4 (lower is better)
Translates to: PEEPGKWRPLPLLPQLDTKRKEA*FTERCR
Trigger: CCTGCAGCGCTCGGTGAAGCATGCTTCCTTCCTCTT...TGTGTCCAGCTGTGGCAGCAAAGGGAGCGGTCTCCATTTCCCAGGCTCCTCTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp CACCCTGTCTGCAGCCAGCCCGGCACCTGTCTTAAGGCTCCAAGGCCATCTGCAGATCTGGCAGCTTTTTaGAGGCCTGTAGGTCCAGCT +
Preference number: 4 (lower is better)
Translates to: HPVCSQPGTCLKAPRPSADLAAF*RPVGPA
Trigger: AGCTGGACCTACAGGCCTCCAAAAAGCTGCCAGATC...TGCAGATGGCCTTGGAGCCTTAAGACAGGTGCCGGGCTGGCTGCAGACAGGGTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS-3UTR CCA 90 bp TCTGAAGACGGTTGGAGCCCCAGTGGGCATCTCCTTGACACACGGCCAGAGGCACTTCCGTCTCGGCGATaGTGGCTTGGTTTTGCTCCT +
Preference number: 4 (lower is better)
Translates to: SEDGWSPSGHLLDTRPEALPSRR*WLGFAP
Trigger: AGGAGCAAAACCAAGCCACCATCGCCGAGACGGAAG...TGCCTCTGGCCGTGTGTCAAGGAGATGCCCACTGGGGCTCCAACCGTCTTCAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp GTTGCTGTTCAGAGCCATGCGGCGCTGCCTGGCCAGACCCGGCTACTAGGGTGTCTCATGGTTGGTTACTaGGGCCAAAGGAGACATCTC +
Preference number: 4 (lower is better)
Translates to: VAVQSHAALPGQTRLLGCLMVGY*GQRRHL
Trigger: GAGATGTCTCCTTTGGCCCCAGTAACCAACCATGAG...ACACCCTAGTAGCCGGGTCTGGCCAGGCAGCGCCGCATGGCTCTGAACAGCAAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp GACAGAGTTGCTGTTCAGAGCCATGCGGCGCTGCCTGGCCAGACCCGGCTACTAGCTGATTCAATGCTCTaGGACCGTCTTCTGAGTCCG +
Preference number: 4 (lower is better)
Translates to: DRVAVQSHAALPGQTRLLADSML*DRLLSP
Trigger: CGGACTCAGAAGACGGTCCCAGAGCATTGAATCAGC...TAGTAGCCGGGTCTGGCCAGGCAGCGCCGCATGGCTCTGAACAGCAACTCTGTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp CTGAAGACGGTTGGAGCCCCAGTGGGCATCTCCTTGACACACGGCCAGAGGCAGGCTGATTCAATGCTCTaGGACCGTCTTCTGAGTCCG +
Preference number: 4 (lower is better)
Translates to: LKTVGAPVGISLTHGQRQADSML*DRLLSP
Trigger: CGGACTCAGAAGACGGTCCCAGAGCATTGAATCAGC...CTGCCTCTGGCCGTGTGTCAAGGAGATGCCCACTGGGGCTCCAACCGTCTTCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp CCAGAGGAGCCTGGGAAATGGAGACCGCTCCCTTTGCTGCCACAGCTGGACACAGCGATTCCAGCATGGTaGACACTTACGGTGGGACTC +
Preference number: 4 (lower is better)
Translates to: PEEPGKWRPLPLLPQLDTAIPAW*TLTVGL
Trigger: GAGTCCCACCGTAAGTGTCCACCATGCTGGAATCGC...TGTGTCCAGCTGTGGCAGCAAAGGGAGCGGTCTCCATTTCCCAGGCTCCTCTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp GCAGAGTTCTCCATTGACACCTGCTCAGGGTTAGGAAGAGGCCGTGTGAACTGCAAGCGAAGGCCCCTTTaGATGCGAGCCAGGGCCAGC +
Preference number: 4 (lower is better)
Translates to: AEFSIDTCSGLGRGRVNCKRRPL*MRARAS
Trigger: GCTGGCCCTGGCTCGCATCCAAAGGGGCCTTCGCTT...GCAGTTCACACGGCCTCTTCCTAACCCTGAGCAGGTGTCAATGGAGAACTCTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp AGAGGAGCCTGGGAAATGGAGACCGCTCCCTTTGCTGCCACAGCTGGACACAGTACTCAGCCACTGCGATaGGAACACACACAGGCTCGG +
Preference number: 4 (lower is better)
Translates to: RGAWEMETAPFAATAGHSTQPLR*EHTQAR
Trigger: CCGAGCCTGTGTGTGTTCCCATCGCAGTGGCTGAGT...ACTGTGTCCAGCTGTGGCAGCAAAGGGAGCGGTCTCCATTTCCCAGGCTCCTCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp TTCTCCTCCCTTGGCCTTGGGACAGGGCCTGCCACATCTCAGAAGCAAGCTACGACTCAGCCACTGCGATaGGAACACACACAGGCTCGG +
Preference number: 4 (lower is better)
Translates to: FSSLGLGTGPATSQKQATTQPLR*EHTQAR
Trigger: CCGAGCCTGTGTGTGTTCCCATCGCAGTGGCTGAGT...CGTAGCTTGCTTCTGAGATGTGGCAGGCCCTGTCCCAAGGCCAAGGGAGGAGAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp CACCCTGTCTGCAGCCAGCCCGGCACCTGTCTTAAGGCTCCAAGGCCATCTGCAATTCCTGCTGTTTGCTaGACTCTTCCTCCTCCGTGC +
Preference number: 4 (lower is better)
Translates to: HPVCSQPGTCLKAPRPSAIPAVC*TLPPPC
Trigger: GCACGGAGGAGGAAGAGTCCAGCAAACAGCAGGAAT...TGCAGATGGCCTTGGAGCCTTAAGACAGGTGCCGGGCTGGCTGCAGACAGGGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS-3UTR CCA 90 bp CCTCTCCCATGGGGGATGGATGGCTTGTCACCTTCCAGGTCACAGAACCAGGCCAGGTCCCCTTCGGTCTaGTTGATGCACCTACCGAAC +
Preference number: 4 (lower is better)
Translates to: PLPWGMDGLSPSRSQNQARSPSV*LMHLPN
Trigger: GTTCGGTAGGTGCATCAACCAGACCGAAGGGGACCT...GGCCTGGTTCTGTGACCTGGAAGGTGACAAGCCATCCATCCCCCATGGGAGAGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp TCTGAAGACGGTTGGAGCCCCAGTGGGCATCTCCTTGACACACGGCCAGAGGCACTCTCGGTCCCTATCTaGAGATGGAGGGAAGTCTGC +
Preference number: 4 (lower is better)
Translates to: SEDGWSPSGHLLDTRPEALSVPI*RWREVC
Trigger: GCAGACTTCCCTCCATCTCCAGATAGGGACCGAGAG...TGCCTCTGGCCGTGTGTCAAGGAGATGCCCACTGGGGCTCCAACCGTCTTCAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp GAACTCTGCCGTGTGGTTCCTCCACCTGGAGGTTCCCCTGTCACCTCCAGAGCTGGGATTCCTGTTTGCTaGACTCTTCCTCCTCCGTGC +
Preference number: 4 (lower is better)
Translates to: ELCRVVPPPGGSPVTSRAGIPVC*TLPPPC
Trigger: GCACGGAGGAGGAAGAGTCCAGCAAACAGGAATCCC...AGCTCTGGAGGTGACAGGGGAACCTCCAGGTGGAGGAACCACACGGCAGAGTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp CTGCCTTCCTCGAGCCCTTGGGCCCCAACATTAATACTCTTACAGGAGAGGAAGCCAGTGACTCCCGGGTaGACCTACGGAAGCTGCTGG +
Preference number: 4 (lower is better)
Translates to: LPSSSPWAPTLILLQERKPVTPG*TYGSCW
Trigger: CCAGCAGCTTCCGTAGGTTCACCCGGGAGTCACTGG...CTTCCTCTCCTGTAAGAGTATTAATGTTGGGGCCCAAGGGCTCGAGGAAGGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp AGTTGCTGTTCAGAGCCATGCGGCGCTGCCTGGCCAGACCCGGCTACTAGGGTGCTCGAGCTAGAATCTTaGCCAGAGACTCAAAGGTGT +
Preference number: 4 (lower is better)
Translates to: SCCSEPCGAAWPDPATRVLELES*PETQRC
Trigger: ACACCTTTGAGTCTCTGGTCAAGATTCTAGCTCGAG...CACCCTAGTAGCCGGGTCTGGCCAGGCAGCGCCGCATGGCTCTGAACAGCAACT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp ACTCGCCCACTCGCGTGTGTGAGTGAAGTGCTTAGGCCTTCCTGGCTCCTCAGCCCGTGGTGCCATTCTTaGGTAGGTAATTGGCTGGGT +
Preference number: 4 (lower is better)
Translates to: TRPLACVSEVLRPSWLLSPWCHS*VGNWLG
Trigger: ACCCAGCCAATTACCTACTCAAGAATGGCACCACGG...GCTGAGGAGCCAGGAAGGCCTAAGCACTTCACTCACACACGCGAGTGGGCGAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp TCCTCTCCCATGGGGGATGGATGGCTTGTCACCTTCCAGGTCACAGAACCAGGCCCTCGTGTTCCTTCTTaGGCATCTCCATGGCCTCCT +
Preference number: 4 (lower is better)
Translates to: SSPMGDGWLVTFQVTEPGPRVPS*ASPWPP
Trigger: AGGAGGCCATGGAGATGCTCAAGAAGGAACACGAGG...GCCTGGTTCTGTGACCTGGAAGGTGACAAGCCATCCATCCCCCATGGGAGAGGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp AGAGGAGCCTGGGAAATGGAGACCGCTCCCTTTGCTGCCACAGCTGGACACAGTATGATTTGGCCAGCTTaGAGACCCGCAGCAGACGGA +
Preference number: 4 (lower is better)
Translates to: RGAWEMETAPFAATAGHSMIWPA*RPAADG
Trigger: TCCGTCTGCTGCGGGTCTTCAAGCTGGCCAAATCAT...ACTGTGTCCAGCTGTGGCAGCAAAGGGAGCGGTCTCCATTTCCCAGGCTCCTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp GCAGAGTTCTCCATTGACACCTGCTCAGGGTTAGGAAGAGGCCGTGTGAACTGCCCCAGGTGGTCCGCTTaGCAAAGCGAAGGCCCCTTT +
Preference number: 4 (lower is better)
Translates to: AEFSIDTCSGLGRGRVNCPRWSA*QSEGPF
Trigger: AAAGGGGCCTTCGCTTTGTCAAGCGGACCACCTGGG...GCAGTTCACACGGCCTCTTCCTAACCCTGAGCAGGTGTCAATGGAGAACTCTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp GTGAGCGAGGCTGCCTTCCTCGAGCCCTTGGGCCCCAACATTAATACTCTTACACATGCCCTCGAATCGTaGCAAAGCCCTCAGGGGTCG +
Preference number: 4 (lower is better)
Translates to: VSEAAFLEPLGPNINTLTHALES*QSPQGS
Trigger: CGACCCCTGAGGGCTTTGTCACGATTCGAGGGCATG...TGTAAGAGTATTAATGTTGGGGCCCAAGGGCTCGAGGAAGGCAGCCTCGCTCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp CAGGAGCGTCCAGCCCTCCGACAGCTCGGCGAGGTAGGTAGGAGCAGCCAGCCCTCACAATGTCGAATATaGAACCCTGGTACTTGTTCA +
Preference number: 4 (lower is better)
Translates to: QERPALRQLGEVGRSSQPSQCRI*NPGTCS
Trigger: TGAACAAGTACCAGGGTTTCATATTCGACATTGTGA...GGGCTGGCTGCTCCTACCTACCTCGCCGAGCTGTCGGAGGGCTGGACGCTCCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS-3UTR TCA 90 bp CTGAAGACGGTTGGAGCCCCAGTGGGCATCTCCTTGACACACGGCCAGAGGCAGAGAAGTACTTCTGGATaGTGTCGGAGAGGACAGTGC +
Preference number: 4 (lower is better)
Translates to: LKTVGAPVGISLTHGQRQRSTSG*CRRGQC
Trigger: GCACTGTCCTCTCCGACATCATCCAGAAGTACTTCT...CTGCCTCTGGCCGTGTGTCAAGGAGATGCCCACTGGGGCTCCAACCGTCTTCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp CTGAAGACGGTTGGAGCCCCAGTGGGCATCTCCTTGACACACGGCCAGAGGCAGAAGGATTGGCCGCCATaGATTTCTCCTCCATCTGGA +
Preference number: 4 (lower is better)
Translates to: LKTVGAPVGISLTHGQRQKDWPP*ISPPSG
Trigger: TCCAGATGGAGGAGAAATTCATGGCGGCCAATCCTT...CTGCCTCTGGCCGTGTGTCAAGGAGATGCCCACTGGGGCTCCAACCGTCTTCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp CAGAAGACGCCTAGGATAGTCAGACCCTGGGCTGGGCCCAGATGCCACACTGTCCTTGTTTTTCAGCCATaGGCTTCTCGATGGCCGCCA +
Preference number: 4 (lower is better)
Translates to: QKTPRIVRPWAGPRCHTVLVFQP*ASRWPP
Trigger: TGGCGGCCATCGAGAAGCGCATGGCTGAAAAACAAG...GACAGTGTGGCATCTGGGCCCAGCCCAGGGTCTGACTATCCTAGGCGTCTTCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp TCTAGAAAAGGAGGCCATGCTAAGCCAAGGACTCGGGACTCGATTGCCCCTCCCGCTCTCGGGGTGGGTTaGCATAGAGATCTGGCAGCT +
Preference number: 4 (lower is better)
Translates to: SRKGGHAKPRTRDSIAPPALGVG*HRDLAA
Trigger: AGCTGCCAGATCTCTATGGCAACCCACCCCGAGAGC...GGGAGGGGCAATCGAGTCCCGAGTCCTTGGCTTAGCATGGCCTCCTTTTCTAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS-3UTR GCA 90 bp TTCTCCTCCCTTGGCCTTGGGACAGGGCCTGCCACATCTCAGAAGCAAGCTACGAGGAAGGTGAACGCATaGAGGCAGAAGCCTCGAGCT +
Preference number: 4 (lower is better)
Translates to: FSSLGLGTGPATSQKQATRKVNA*RQKPRA
Trigger: AGCTCGAGGCTTCTGCCTGCATGCGTTCACCTTCCT...CGTAGCTTGCTTCTGAGATGTGGCAGGCCCTGTCCCAAGGCCAAGGGAGGAGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp CCTCTCCCATGGGGGATGGATGGCTTGTCACCTTCCAGGTCACAGAACCAGGCCTTACGCACGCACTTGTaGCTCAGGTTGCCCATGAAG +
Preference number: 4 (lower is better)
Translates to: PLPWGMDGLSPSRSQNQALRTHL*LRLPMK
Trigger: CTTCATGGGCAACCTGAGGCACAAGTGCGTGCGTAA...GGCCTGGTTCTGTGACCTGGAAGGTGACAAGCCATCCATCCCCCATGGGAGAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp ACTCGCCCACTCGCGTGTGTGAGTGAAGTGCTTAGGCCTTCCTGGCTCCTCAGCGCTCTCGCTCTCTCCTaGTGTACTGTTCTCGTCATC +
Preference number: 4 (lower is better)
Translates to: TRPLACVSEVLRPSWLLSALALS*CTVLVI
Trigger: GATGACGAGAACAGTACAGCAGGAGAGAGCGAGAGC...GCTGAGGAGCCAGGAAGGCCTAAGCACTTCACTCACACACGCGAGTGGGCGAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp CCTCTCCCATGGGGGATGGATGGCTTGTCACCTTCCAGGTCACAGAACCAGGCCGCTCTCGCTCTCTCCTaGTGTACTGTTCTCGTCATC +
Preference number: 4 (lower is better)
Translates to: PLPWGMDGLSPSRSQNQAALALS*CTVLVI
Trigger: GATGACGAGAACAGTACAGCAGGAGAGAGCGAGAGC...GGCCTGGTTCTGTGACCTGGAAGGTGACAAGCCATCCATCCCCCATGGGAGAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp ACTCGCCCACTCGCGTGTGTGAGTGAAGTGCTTAGGCCTTCCTGGCTCCTCAGCAGGAAACCACCCCATTaGAGTCCACGGTGCTGTTTC +
Preference number: 4 (lower is better)
Translates to: TRPLACVSEVLRPSWLLSRKPPH*SPRCCF
Trigger: GAAACAGCACCGTGGACTGCAATGGGGTGGTTTCCT...GCTGAGGAGCCAGGAAGGCCTAAGCACTTCACTCACACACGCGAGTGGGCGAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp CTGAAGACGGTTGGAGCCCCAGTGGGCATCTCCTTGACACACGGCCAGAGGCAGACCAAGTTTCCGACCTaGAGCATCTCCTCAAACTCG +
Preference number: 4 (lower is better)
Translates to: LKTVGAPVGISLTHGQRQTKFPT*SISSNS
Trigger: CGAGTTTGAGGAGATGCTGCAGGTCGGAAACTTGGT...CTGCCTCTGGCCGTGTGTCAAGGAGATGCCCACTGGGGCTCCAACCGTCTTCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp ATTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTTCGGTATCCCCAGGGGTaGCCTGGCCCGGCCGCTTGT +
Preference number: 4 (lower is better)
Translates to: INTLTGEEGRPGQLSGSFRYPQG*PGPAAC
Trigger: ACAAGCGGCCGGGCCAGGGCACCCCTGGGGATACCG...AAAGCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp GAACTCTGCCGTGTGGTTCCTCCACCTGGAGGTTCCCCTGTCACCTCCAGAGCTACTCTTCCTCCTCCGTaGCAAGGCTGTTCTCCTCAT +
Preference number: 4 (lower is better)
Translates to: ELCRVVPPPGGSPVTSRATLPPP*QGCSPH
Trigger: ATGAGGAGAACAGCCTTGGCACGGAGGAGGAAGAGT...AGCTCTGGAGGTGACAGGGGAACCTCCAGGTGGAGGAACCACACGGCAGAGTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp CCAGAGGAGCCTGGGAAATGGAGACCGCTCCCTTTGCTGCCACAGCTGGACACAACTCTTCCTCCTCCGTaGCAAGGCTGTTCTCCTCAT +
Preference number: 4 (lower is better)
Translates to: PEEPGKWRPLPLLPQLDTTLPPP*QGCSPH
Trigger: ATGAGGAGAACAGCCTTGGCACGGAGGAGGAAGAGT...TGTGTCCAGCTGTGGCAGCAAAGGGAGCGGTCTCCATTTCCCAGGCTCCTCTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp TTCTCCTCCCTTGGCCTTGGGACAGGGCCTGCCACATCTCAGAAGCAAGCTACGTTAAATGTCGCCACCTaGAGCAGGGCCAGGTACCCA +
Preference number: 4 (lower is better)
Translates to: FSSLGLGTGPATSQKQATLNVAT*SRARYP
Trigger: TGGGTACCTGGCCCTGCTGCAGGTGGCGACATTTAA...CGTAGCTTGCTTCTGAGATGTGGCAGGCCCTGTCCCAAGGCCAAGGGAGGAGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp AGAGGAGCCTGGGAAATGGAGACCGCTCCCTTTGCTGCCACAGCTGGACACAGTAGGTTGTCCTCCCACTaGGGCTGCTCTTCATACCCT +
Preference number: 4 (lower is better)
Translates to: RGAWEMETAPFAATAGHSRLSSH*GCSSYP
Trigger: AGGGTATGAAGAGCAGCCGCAGTGGGAGGACAACCT...ACTGTGTCCAGCTGTGGCAGCAAAGGGAGCGGTCTCCATTTCCCAGGCTCCTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp GCAGAGTTCTCCATTGACACCTGCTCAGGGTTAGGAAGAGGCCGTGTGAACTGCGAAGAGGATGCCCACTaGTGGGCTCCCACAGTTCCC +
Preference number: 4 (lower is better)
Translates to: AEFSIDTCSGLGRGRVNCEEDAH*WAPTVP
Trigger: GGGAACTGTGGGAGCCCAGCAGTGGGCATCCTCTTC...GCAGTTCACACGGCCTCTTCCTAACCCTGAGCAGGTGTCAATGGAGAACTCTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp GTGAGCGAGGCTGCCTTCCTCGAGCCCTTGGGCCCCAACATTAATACTCTTACAGAAGAGGATGCCCACTaGTGGGCTCCCACAGTTCCC +
Preference number: 4 (lower is better)
Translates to: VSEAAFLEPLGPNINTLTEEDAH*WAPTVP
Trigger: GGGAACTGTGGGAGCCCAGCAGTGGGCATCCTCTTC...TGTAAGAGTATTAATGTTGGGGCCCAAGGGCTCGAGGAAGGCAGCCTCGCTCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp GAACTCTGCCGTGTGGTTCCTCCACCTGGAGGTTCCCCTGTCACCTCCAGAGCTAATGAGCTCTCGGGGTaGGTTGCCATAGAGATCTGG +
Preference number: 4 (lower is better)
Translates to: ELCRVVPPPGGSPVTSRANELSG*VAIEIW
Trigger: CCAGATCTCTATGGCAACCCACCCCGAGAGCTCATT...AGCTCTGGAGGTGACAGGGGAACCTCCAGGTGGAGGAACCACACGGCAGAGTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp CTGAAGACGGTTGGAGCCCCAGTGGGCATCTCCTTGACACACGGCCAGAGGCAGCTCATGGTTGGTTACTaGGGCCAAAGGAGACATCTC +
Preference number: 4 (lower is better)
Translates to: LKTVGAPVGISLTHGQRQLMVGY*GQRRHL
Trigger: GAGATGTCTCCTTTGGCCCCAGTAACCAACCATGAG...CTGCCTCTGGCCGTGTGTCAAGGAGATGCCCACTGGGGCTCCAACCGTCTTCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp GTGAGCGAGGCTGCCTTCCTCGAGCCCTTGGGCCCCAACATTAATACTCTTACAAGCAGCGATGTGCGGTaGCTCTCGCTCTCTCCTGCT +
Preference number: 4 (lower is better)
Translates to: VSEAAFLEPLGPNINTLTSSDVR*LSLSPA
Trigger: AGCAGGAGAGAGCGAGAGCCACCGCACATCGCTGCT...TGTAAGAGTATTAATGTTGGGGCCCAAGGGCTCGAGGAAGGCAGCCTCGCTCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp TTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTTCGGGGTGGTGGGGACCTaGGAGCGGCGATACAGCTGG +
Preference number: 4 (lower is better)
Translates to: LILLQERKGDQGSSLEAFGVVGT*ERRYSW
Trigger: CCAGCTGTATCGCCGCTCCCAGGTCCCCACCACCCC...GAAAGCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp CAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTTCAATTTTTATAGCGGGGTGGTGGGGACCTaGGAGCGGCGATACAGCTGG +
Preference number: 4 (lower is better)
Translates to: QERKGDQGSSLEAFNFYSGVVGT*ERRYSW
Trigger: CCAGCTGTATCGCCGCTCCCAGGTCCCCACCACCCC...GCTATAAAAATTGAAAGCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp CAGAAGACGCCTAGGATAGTCAGACCCTGGGCTGGGCCCAGATGCCACACTGTCATTCCTGCTGTTTGCTaGACTCTTCCTCCTCCGTGC +
Preference number: 4 (lower is better)
Translates to: QKTPRIVRPWAGPRCHTVIPAVC*TLPPPC
Trigger: GCACGGAGGAGGAAGAGTCCAGCAAACAGCAGGAAT...GACAGTGTGGCATCTGGGCCCAGCCCAGGGTCTGACTATCCTAGGCGTCTTCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS-3UTR CCA 90 bp TCTAGAAAAGGAGGCCATGCTAAGCCAAGGACTCGGGACTCGATTGCCCCTCCCCGGCTTCAGAGGATGTaGTCTCTGACACCTGGCTCC +
Preference number: 4 (lower is better)
Translates to: SRKGGHAKPRTRDSIAPPRLQRM*SLTPGS
Trigger: GGAGCCAGGTGTCAGAGACCACATCCTCTGAAGCCG...GGGAGGGGCAATCGAGTCCCGAGTCCTTGGCTTAGCATGGCCTCCTTTTCTAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS-3UTR CCA 90 bp ACTCGCCCACTCGCGTGTGTGAGTGAAGTGCTTAGGCCTTCCTGGCTCCTCAGCTTGATGAGGCTTATCTaGTTGGGCTTGGCGATGCGG +
Preference number: 4 (lower is better)
Translates to: TRPLACVSEVLRPSWLLSLMRLI*LGLAMR
Trigger: CCGCATCGCCAAGCCCAACCAGATAAGCCTCATCAA...GCTGAGGAGCCAGGAAGGCCTAAGCACTTCACTCACACACGCGAGTGGGCGAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp AGAGGAGCCTGGGAAATGGAGACCGCTCCCTTTGCTGCCACAGCTGGACACAGTCTCTCGGTCCCTATCTaGAGATGGAGGGAAGTCTGC +
Preference number: 4 (lower is better)
Translates to: RGAWEMETAPFAATAGHSLSVPI*RWREVC
Trigger: GCAGACTTCCCTCCATCTCCAGATAGGGACCGAGAG...ACTGTGTCCAGCTGTGGCAGCAAAGGGAGCGGTCTCCATTTCCCAGGCTCCTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp AACATTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCCTCGATGGCCGCCAGTaGCTCCCGGGTGAACCTACG +
Preference number: 4 (lower is better)
Translates to: NINTLTGEEGRPGQLSGSLDGRQ*LPGEPT
Trigger: CGTAGGTTCACCCGGGAGTCACTGGCGGCCATCGAG...GCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAATGTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp CAGAAGACGCCTAGGATAGTCAGACCCTGGGCTGGGCCCAGATGCCACACTGTCGGTCGTGTTGTGCCATaGACACACAGTTGGTTAGGA +
Preference number: 4 (lower is better)
Translates to: QKTPRIVRPWAGPRCHTVGRVVP*THSWLG
Trigger: TCCTAACCAACTGTGTGTTCATGGCACAACACGACC...GACAGTGTGGCATCTGGGCCCAGCCCAGGGTCTGACTATCCTAGGCGTCTTCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp CTGCCTTCCTCGAGCCCTTGGGCCCCAACATTAATACTCTTACAGGAGAGGAAGTCTGGGACCGTCTTCTaGGTCCGACTTGGGGAGCCT +
Preference number: 4 (lower is better)
Translates to: LPSSSPWAPTLILLQERKSGTVF*VRLGEP
Trigger: AGGCTCCCCAAGTCGGACTCAGAAGACGGTCCCAGA...CTTCCTCTCCTGTAAGAGTATTAATGTTGGGGCCCAAGGGCTCGAGGAAGGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp TCTAGAAAAGGAGGCCATGCTAAGCCAAGGACTCGGGACTCGATTGCCCCTCCCTCGGTGCCTCAGCTCTaGGTAGTTCTTGCCGAAGAG +
Preference number: 4 (lower is better)
Translates to: SRKGGHAKPRTRDSIAPPSVPQL*VVLAEE
Trigger: CTCTTCGGCAAGAACTACTCAGAGCTGAGGCACCGA...GGGAGGGGCAATCGAGTCCCGAGTCCTTGGCTTAGCATGGCCTCCTTTTCTAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS-3UTR TCA 90 bp GCTCTGAGAGCAGAGTTCTCCATTGACACCTGCTCAGGGTTAGGAAGAGGCCGTGTGTCCTCAGGGACTTaGTGGGACCCATCTCGGCAA +
Preference number: 4 (lower is better)
Translates to: ALRAEFSIDTCSGLGRGRVSSGT*WDPSRQ
Trigger: TTGCCGAGATGGGTCCCATCAAGTCCCTGAGGACAC...ACGGCCTCTTCCTAACCCTGAGCAGGTGTCAATGGAGAACTCTGCTCTCAGAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp GACCCTGGGCTGGGCCCAGATGCCACACTGTCTCCTCTCCCATGGGGGATGGATTCTTGGCCAAGATGTTaGCTTTTTCAGGGCTCTGAT +
Preference number: 4 (lower is better)
Translates to: DPGLGPDATLSPLPWGMDSWPRC*LFQGSD
Trigger: ATCAGAGCCCTGAAAAAGTCAACATCTTGGCCAAGA...ATCCATCCCCCATGGGAGAGGAGACAGTGTGGCATCTGGGCCCAGCCCAGGGTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp AGTTGCTGTTCAGAGCCATGCGGCGCTGCCTGGCCAGACCCGGCTACTAGGGTGTCTTGGCCAAGATGTTaGCTTTTTCAGGGCTCTGAT +
Preference number: 4 (lower is better)
Translates to: SCCSEPCGAAWPDPATRVSWPRC*LFQGSD
Trigger: ATCAGAGCCCTGAAAAAGTCAACATCTTGGCCAAGA...CACCCTAGTAGCCGGGTCTGGCCAGGCAGCGCCGCATGGCTCTGAACAGCAACT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp AGAGGAGCCTGGGAAATGGAGACCGCTCCCTTTGCTGCCACAGCTGGACACAGTTGTTCCAGCTGTTGGTaGAGTAATAGTGGCGCAGGG +
Preference number: 4 (lower is better)
Translates to: RGAWEMETAPFAATAGHSCSSCW*SNSGAG
Trigger: CCCTGCGCCACTATTACTTCACCAACAGCTGGAACA...ACTGTGTCCAGCTGTGGCAGCAAAGGGAGCGGTCTCCATTTCCCAGGCTCCTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp AACATTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCCTCCTCGGATCAGCCTaGGGATGCGGCCGATCCTGG +
Preference number: 4 (lower is better)
Translates to: NINTLTGEEGRPGQLSGSLLGSA*GCGRSW
Trigger: CCAGGATCGGCCGCATCCTCAGGCTGATCCGAGGAG...GCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAATGTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp TCTAGAAAAGGAGGCCATGCTAAGCCAAGGACTCGGGACTCGATTGCCCCTCCCTACGGAAGCTGCTGGTaGCCCGAGGTAACAGGAAGT +
Preference number: 4 (lower is better)
Translates to: SRKGGHAKPRTRDSIAPPYGSCW*PEVTGS
Trigger: ACTTCCTGTTACCTCGGGGCACCAGCAGCTTCCGTA...GGGAGGGGCAATCGAGTCCCGAGTCCTTGGCTTAGCATGGCCTCCTTTTCTAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS-3UTR GCA 90 bp GTGAGCGAGGCTGCCTTCCTCGAGCCCTTGGGCCCCAACATTAATACTCTTACAGCTCTCGGGGTGGGTTaGCATAGAGATCTGGCAGCT +
Preference number: 4 (lower is better)
Translates to: VSEAAFLEPLGPNINTLTALGVG*HRDLAA
Trigger: AGCTGCCAGATCTCTATGGCAACCCACCCCGAGAGC...TGTAAGAGTATTAATGTTGGGGCCCAAGGGCTCGAGGAAGGCAGCCTCGCTCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp AACATTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTCTTCACAGCCGCTCTaGGCACCGGGTGGAAGGGGC +
Preference number: 4 (lower is better)
Translates to: NINTLTGEEGRPGQLSGSSSQPL*APGGRG
Trigger: GCCCCTTCCACCCGGTGCGCAGAGCGGCTGTGAAGA...GCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAATGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp TTCTCCTCCCTTGGCCTTGGGACAGGGCCTGCCACATCTCAGAAGCAAGCTACGCATGTAGATCTTTCCTaGGGACCTCAGGGTCTGCTG +
Preference number: 4 (lower is better)
Translates to: FSSLGLGTGPATSQKQATHVDLS*GPQGLL
Trigger: CAGCAGACCCTGAGGTCCGCAGGAAAGATCTACATG...CGTAGCTTGCTTCTGAGATGTGGCAGGCCCTGTCCCAAGGCCAAGGGAGGAGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp CACAGAACTCTGCCGTGTGGTTCCTCCACCTGGAGGTTCCCCTGTCACCTCCAGGTCGTTTCCTCCTCTTaGTCCTTCTCTCATGGTTGG +
Preference number: 4 (lower is better)
Translates to: HRTLPCGSSTWRFPCHLQVVSSS*SFSHGW
Trigger: CCAACCATGAGAGAAGGAGCAAGAGGAGGAAACGAC...CTGGAGGTGACAGGGGAACCTCCAGGTGGAGGAACCACACGGCAGAGTTCTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp GAACTCTGCCGTGTGGTTCCTCCACCTGGAGGTTCCCCTGTCACCTCCAGAGCTGTCGTTTCCTCCTCTTaGTCCTTCTCTCATGGTTGG +
Preference number: 4 (lower is better)
Translates to: ELCRVVPPPGGSPVTSRAVVSSS*SFSHGW
Trigger: CCAACCATGAGAGAAGGAGCAAGAGGAGGAAACGAC...AGCTCTGGAGGTGACAGGGGAACCTCCAGGTGGAGGAACCACACGGCAGAGTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp AGAGGAGCCTGGGAAATGGAGACCGCTCCCTTTGCTGCCACAGCTGGACACAGTAGGAAACCACCCCATTaGAGTCCACGGTGCTGTTTC +
Preference number: 4 (lower is better)
Translates to: RGAWEMETAPFAATAGHSRKPPH*SPRCCF
Trigger: GAAACAGCACCGTGGACTGCAATGGGGTGGTTTCCT...ACTGTGTCCAGCTGTGGCAGCAAAGGGAGCGGTCTCCATTTCCCAGGCTCCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp ACTCGCCCACTCGCGTGTGTGAGTGAAGTGCTTAGGCCTTCCTGGCTCCTCAGCACCAAGTTTCCGACCTaGAGCATCTCCTCAAACTCG +
Preference number: 4 (lower is better)
Translates to: TRPLACVSEVLRPSWLLSTKFPT*SISSNS
Trigger: CGAGTTTGAGGAGATGCTGCAGGTCGGAAACTTGGT...GCTGAGGAGCCAGGAAGGCCTAAGCACTTCACTCACACACGCGAGTGGGCGAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp TCTGAAGACGGTTGGAGCCCCAGTGGGCATCTCCTTGACACACGGCCAGAGGCAACCAAGTTTCCGACCTaGAGCATCTCCTCAAACTCG +
Preference number: 4 (lower is better)
Translates to: SEDGWSPSGHLLDTRPEATKFPT*SISSNS
Trigger: CGAGTTTGAGGAGATGCTGCAGGTCGGAAACTTGGT...TGCCTCTGGCCGTGTGTCAAGGAGATGCCCACTGGGGCTCCAACCGTCTTCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp TCTAGAAAAGGAGGCCATGCTAAGCCAAGGACTCGGGACTCGATTGCCCCTCCCTTCTTGCCGAAGAGCTaGATACCCACCACGGCGAAG +
Preference number: 4 (lower is better)
Translates to: SRKGGHAKPRTRDSIAPPFLPKS*IPTTAK
Trigger: CTTCGCCGTGGTGGGTATGCAGCTCTTCGGCAAGAA...GGGAGGGGCAATCGAGTCCCGAGTCCTTGGCTTAGCATGGCCTCCTTTTCTAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS-3UTR GCA 90 bp CCCTTGGGCCCCAACATTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGAAGAAGTCCATCATGTaGCAGCGGGGCAGCAGGCCA +
Preference number: 4 (lower is better)
Translates to: PLGPNINTLTGEEGRPGQKKSIM*QRGSRP
Trigger: TGGCCTGCTGCCCCGCTGGCACATGATGGACTTCTT...CTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAATGTTGGGGCCCAAGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp GCTCTGAGAGCAGAGTTCTCCATTGACACCTGCTCAGGGTTAGGAAGAGGCCGTGGCTGTGAGGTTGTCTaGGCTGAAGGAGCTGAGCAG +
Preference number: 4 (lower is better)
Translates to: ALRAEFSIDTCSGLGRGRGCEVV*AEGAEQ
Trigger: CTGCTCAGCTCCTTCAGCGCAGACAACCTCACAGCC...ACGGCCTCTTCCTAACCCTGAGCAGGTGTCAATGGAGAACTCTGCTCTCAGAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp GCAGAGTTCTCCATTGACACCTGCTCAGGGTTAGGAAGAGGCCGTGTGAACTGCCTCTTGCTGCCAGTCTaGCTGAGACGTACTGGCCTC +
Preference number: 4 (lower is better)
Translates to: AEFSIDTCSGLGRGRVNCLLLPV*LRRTGL
Trigger: GAGGCCAGTACGTCTCAGGCAGACTGGCAGCAAGAG...GCAGTTCACACGGCCTCTTCCTAACCCTGAGCAGGTGTCAATGGAGAACTCTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp CTGCCTTCCTCGAGCCCTTGGGCCCCAACATTAATACTCTTACAGGAGAGGAAGTCCCCCTGGAGCCATTaGTGTTGGGCAGGTTGGGGT +
Preference number: 4 (lower is better)
Translates to: LPSSSPWAPTLILLQERKSPWSH*CWAGWG
Trigger: ACCCCAACCTGCCCAACAGCAATGGCTCCAGGGGGA...CTTCCTCTCCTGTAAGAGTATTAATGTTGGGGCCCAAGGGCTCGAGGAAGGCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp GCTCTGAGAGCAGAGTTCTCCATTGACACCTGCTCAGGGTTAGGAAGAGGCCGTACCTACGGAAGCTGCTaGTGCCCCGAGGTAACAGGA +
Preference number: 4 (lower is better)
Translates to: ALRAEFSIDTCSGLGRGRTYGSC*CPEVTG
Trigger: TCCTGTTACCTCGGGGCACCAGCAGCTTCCGTAGGT...ACGGCCTCTTCCTAACCCTGAGCAGGTGTCAATGGAGAACTCTGCTCTCAGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp CCAGAGGAGCCTGGGAAATGGAGACCGCTCCCTTTGCTGCCACAGCTGGACACAGTTGCCATAGAGATCTaGCAGCTTTTTGGAGGCCTG +
Preference number: 4 (lower is better)
Translates to: PEEPGKWRPLPLLPQLDTVAIEI*QLFGGL
Trigger: CAGGCCTCCAAAAAGCTGCCAGATCTCTATGGCAAC...TGTGTCCAGCTGTGGCAGCAAAGGGAGCGGTCTCCATTTCCCAGGCTCCTCTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp GCAGAGTTCTCCATTGACACCTGCTCAGGGTTAGGAAGAGGCCGTGTGAACTGCCCGTCTCGGCGATGGTaGCTTGGTTTTGCTCCTCGT +
Preference number: 4 (lower is better)
Translates to: AEFSIDTCSGLGRGRVNCPSRRW*LGFAPR
Trigger: ACGAGGAGCAAAACCAAGCCACCATCGCCGAGACGG...GCAGTTCACACGGCCTCTTCCTAACCCTGAGCAGGTGTCAATGGAGAACTCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp CCTCTCCCATGGGGGATGGATGGCTTGTCACCTTCCAGGTCACAGAACCAGGCCTCCTTCTCTCATGGTTaGTTACTGGGGCCAAAGGAG +
Preference number: 4 (lower is better)
Translates to: PLPWGMDGLSPSRSQNQASFSHG*LLGPKE
Trigger: CTCCTTTGGCCCCAGTAACCAACCATGAGAGAAGGA...GGCCTGGTTCTGTGACCTGGAAGGTGACAAGCCATCCATCCCCCATGGGAGAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp CCCTTGGGCCCCAACATTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTTCTGAGTCCGACTTaGGGAGCCTGTCATCTCCGC +
Preference number: 4 (lower is better)
Translates to: PLGPNINTLTGEEGRPGQLLSPT*GACHLR
Trigger: GCGGAGATGACAGGCTCCCCAAGTCGGACTCAGAAG...CTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAATGTTGGGGCCCAAGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp AACATTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCGAGCGGCGATACAGCTaGGCAGCTGGCTGTGGGTGG +
Preference number: 4 (lower is better)
Translates to: NINTLTGEEGRPGQLSGSERRYS*AAGCGW
Trigger: CCACCCACAGCCAGCTGCCCAGCTGTATCGCCGCTC...GCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAATGTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp AGTTGCTGTTCAGAGCCATGCGGCGCTGCCTGGCCAGACCCGGCTACTAGGGTGTCGAATATGAAACCCTaGTACTTGTTCAGAGGCCGT +
Preference number: 4 (lower is better)
Translates to: SCCSEPCGAAWPDPATRVSNMKP*YLFRGR
Trigger: ACGGCCTCTGAACAAGTACCAGGGTTTCATATTCGA...CACCCTAGTAGCCGGGTCTGGCCAGGCAGCGCCGCATGGCTCTGAACAGCAACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp TTCTCCTCCCTTGGCCTTGGGACAGGGCCTGCCACATCTCAGAAGCAAGCTACGTTGATGAGGCTTATCTaGTTGGGCTTGGCGATGCGG +
Preference number: 4 (lower is better)
Translates to: FSSLGLGTGPATSQKQATLMRLI*LGLAMR
Trigger: CCGCATCGCCAAGCCCAACCAGATAAGCCTCATCAA...CGTAGCTTGCTTCTGAGATGTGGCAGGCCCTGTCCCAAGGCCAAGGGAGGAGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
3UTR CAA 72 bp TGCCTGGCTGTGAGCGAGGCTGCCTTCCTCGAGCCCTaGGGCCCCAACATTAATACTCTTACAGGAGAGGAA +
Preference number: 4 (lower is better)
Translates to: CLAVSEAAFLEP*GPNINTLTGEE
Trigger: TTCCTCTCCTGTAAGAGTATTAATGTTGGGGCCCAAGGGCTCGAGGAAGGCAGCCTCGCTCACAGCCAGGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp TTCTCCTCCCTTGGCCTTGGGACAGGGCCTGCCACATCTCAGAAGCAAGCTACGGGTCGTGTTGTGCCATaGACACACAGTTGGTTAGGA +
Preference number: 4 (lower is better)
Translates to: FSSLGLGTGPATSQKQATGRVVP*THSWLG
Trigger: TCCTAACCAACTGTGTGTTCATGGCACAACACGACC...CGTAGCTTGCTTCTGAGATGTGGCAGGCCCTGTCCCAAGGCCAAGGGAGGAGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp CCCTTGGGCCCCAACATTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCCTCGTGTTCCTTCTTaGGCATCTCCATGGCCTCCT +
Preference number: 4 (lower is better)
Translates to: PLGPNINTLTGEEGRPGQPRVPS*ASPWPP
Trigger: AGGAGGCCATGGAGATGCTCAAGAAGGAACACGAGG...CTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAATGTTGGGGCCCAAGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp CAGAAGACGCCTAGGATAGTCAGACCCTGGGCTGGGCCCAGATGCCACACTGTCCCACGTTGTCAAAGTTaGCTTTCACCTTGGTCCAGT +
Preference number: 4 (lower is better)
Translates to: QKTPRIVRPWAGPRCHTVPRCQS*LSPWSS
Trigger: ACTGGACCAAGGTGAAAGTCAACTTTGACAACGTGG...GACAGTGTGGCATCTGGGCCCAGCCCAGGGTCTGACTATCCTAGGCGTCTTCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp TTCTCCTCCCTTGGCCTTGGGACAGGGCCTGCCACATCTCAGAAGCAAGCTACGAGAAGTACTTCTGGATaGTGTCGGAGAGGACAGTGC +
Preference number: 4 (lower is better)
Translates to: FSSLGLGTGPATSQKQATRSTSG*CRRGQC
Trigger: GCACTGTCCTCTCCGACATCATCCAGAAGTACTTCT...CGTAGCTTGCTTCTGAGATGTGGCAGGCCCTGTCCCAAGGCCAAGGGAGGAGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp TTCTCCTCCCTTGGCCTTGGGACAGGGCCTGCCACATCTCAGAAGCAAGCTACGAAGGATTGGCCGCCATaGATTTCTCCTCCATCTGGA +
Preference number: 4 (lower is better)
Translates to: FSSLGLGTGPATSQKQATKDWPP*ISPPSG
Trigger: TCCAGATGGAGGAGAAATTCATGGCGGCCAATCCTT...CGTAGCTTGCTTCTGAGATGTGGCAGGCCCTGTCCCAAGGCCAAGGGAGGAGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp TTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTTCGCACCAGCAGCGATGTaGGGTGGCTCTCGCTCTCTC +
Preference number: 4 (lower is better)
Translates to: LILLQERKGDQGSSLEAFAPAAM*GGSRSL
Trigger: GAGAGAGCGAGAGCCACCGCACATCGCTGCTGGTGC...GAAAGCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp CTACTCTCTCCTCCCCTCTGTGCAGTTCTAGAAAAGGAGGCCATGCTAAGCCAATCTGCACATGGAGCCTaGGGTGTCAGCATCTGGGGC +
Preference number: 4 (lower is better)
Translates to: LLSPPLCAVLEKEAMLSQSAHGA*GVSIWG
Trigger: GCCCCAGATGCTGACACCGCAGGCTCCATGTGCAGA...TTGGCTTAGCATGGCCTCCTTTTCTAGAACTGCACAGAGGGGAGGAGAGAGTAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS-3UTR GCA 90 bp CCAGAGGAGCCTGGGAAATGGAGACCGCTCCCTTTGCTGCCACAGCTGGACACACTTGAAGGTCATCTCTaGCGTGAAGATTCCCGTGAA +
Preference number: 4 (lower is better)
Translates to: PEEPGKWRPLPLLPQLDTLEGHL*REDSRE
Trigger: TTCACGGGAATCTTCACGGCAGAGATGACCTTCAAG...TGTGTCCAGCTGTGGCAGCAAAGGGAGCGGTCTCCATTTCCCAGGCTCCTCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp ACTCGCCCACTCGCGTGTGTGAGTGAAGTGCTTAGGCCTTCCTGGCTCCTCAGCCTTGAAGGTCATCTCTaGCGTGAAGATTCCCGTGAA +
Preference number: 4 (lower is better)
Translates to: TRPLACVSEVLRPSWLLSLEGHL*REDSRE
Trigger: TTCACGGGAATCTTCACGGCAGAGATGACCTTCAAG...GCTGAGGAGCCAGGAAGGCCTAAGCACTTCACTCACACACGCGAGTGGGCGAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp AGAGGAGCCTGGGAAATGGAGACCGCTCCCTTTGCTGCCACAGCTGGACACAGTGCTCTGAGTAGTTCTTaGCGAAGAGCTGCATACCCA +
Preference number: 4 (lower is better)
Translates to: RGAWEMETAPFAATAGHSALSSS*RRAAYP
Trigger: TGGGTATGCAGCTCTTCGGCAAGAACTACTCAGAGC...ACTGTGTCCAGCTGTGGCAGCAAAGGGAGCGGTCTCCATTTCCCAGGCTCCTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp CTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTTCAATTTTGAAGGCCCCTTTGGATaGGAGCCAGGGCCAGCTGGA +
Preference number: 4 (lower is better)
Translates to: LLQERKGDQGSSLEAFNFEGPFG*EPGPAG
Trigger: TCCAGCTGGCCCTGGCTCGCATCCAAAGGGGCCTTC...AAAATTGAAAGCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp CCTCTCCCATGGGGGATGGATGGCTTGTCACCTTCCAGGTCACAGAACCAGGCCACAACTTGGGATTCCTaGTGTTTGCTGGACTCTTCC +
Preference number: 4 (lower is better)
Translates to: PLPWGMDGLSPSRSQNQATTWDS*CLLDSS
Trigger: GGAAGAGTCCAGCAAACAGCAGGAATCCCAAGTTGT...GGCCTGGTTCTGTGACCTGGAAGGTGACAAGCCATCCATCCCCCATGGGAGAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS-3UTR GCA 90 bp ACTCGCCCACTCGCGTGTGTGAGTGAAGTGCTTAGGCCTTCCTGGCTCCTCAGCACAACTTGGGATTCCTaGTGTTTGCTGGACTCTTCC +
Preference number: 4 (lower is better)
Translates to: TRPLACVSEVLRPSWLLSTTWDS*CLLDSS
Trigger: GGAAGAGTCCAGCAAACAGCAGGAATCCCAAGTTGT...GCTGAGGAGCCAGGAAGGCCTAAGCACTTCACTCACACACGCGAGTGGGCGAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS-3UTR GCA 90 bp CTGCCTTCCTCGAGCCCTTGGGCCCCAACATTAATACTCTTACAGGAGAGGAAGTGTCCATACAGTGGATaGGGTCCCCGCTCACCATGG +
Preference number: 4 (lower is better)
Translates to: LPSSSPWAPTLILLQERKCPYSG*GPRSPW
Trigger: CCATGGTGAGCGGGGACCGCATCCACTGTATGGACA...CTTCCTCTCCTGTAAGAGTATTAATGTTGGGGCCCAAGGGCTCGAGGAAGGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp TCCTCTCCCATGGGGGATGGATGGCTTGTCACCTTCCAGGTCACAGAACCAGGCGTTGCCATAGAGATCTaGCAGCTTTTTGGAGGCCTG +
Preference number: 4 (lower is better)
Translates to: SSPMGDGWLVTFQVTEPGVAIEI*QLFGGL
Trigger: CAGGCCTCCAAAAAGCTGCCAGATCTCTATGGCAAC...GCCTGGTTCTGTGACCTGGAAGGTGACAAGCCATCCATCCCCCATGGGAGAGGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp GCAGAGTTCTCCATTGACACCTGCTCAGGGTTAGGAAGAGGCCGTGTGAACTGCCTTCCGTCTCGGCGATaGTGGCTTGGTTTTGCTCCT +
Preference number: 4 (lower is better)
Translates to: AEFSIDTCSGLGRGRVNCLPSRR*WLGFAP
Trigger: AGGAGCAAAACCAAGCCACCATCGCCGAGACGGAAG...GCAGTTCACACGGCCTCTTCCTAACCCTGAGCAGGTGTCAATGGAGAACTCTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp TCCTCTCCCATGGGGGATGGATGGCTTGTCACCTTCCAGGTCACAGAACCAGGCCTCATGGTTGGTTACTaGGGCCAAAGGAGACATCTC +
Preference number: 4 (lower is better)
Translates to: SSPMGDGWLVTFQVTEPGLMVGY*GQRRHL
Trigger: GAGATGTCTCCTTTGGCCCCAGTAACCAACCATGAG...GCCTGGTTCTGTGACCTGGAAGGTGACAAGCCATCCATCCCCCATGGGAGAGGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp ACTCGCCCACTCGCGTGTGTGAGTGAAGTGCTTAGGCCTTCCTGGCTCCTCAGCTTGCTCCTTCTCTCATaGTTGGTTACTGGGGCCAAA +
Preference number: 4 (lower is better)
Translates to: TRPLACVSEVLRPSWLLSLLLLS*LVTGAK
Trigger: TTTGGCCCCAGTAACCAACCATGAGAGAAGGAGCAA...GCTGAGGAGCCAGGAAGGCCTAAGCACTTCACTCACACACGCGAGTGGGCGAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp GAACTCTGCCGTGTGGTTCCTCCACCTGGAGGTTCCCCTGTCACCTCCAGAGCTTTGCTCCTTCTCTCATaGTTGGTTACTGGGGCCAAA +
Preference number: 4 (lower is better)
Translates to: ELCRVVPPPGGSPVTSRALLLLS*LVTGAK
Trigger: TTTGGCCCCAGTAACCAACCATGAGAGAAGGAGCAA...AGCTCTGGAGGTGACAGGGGAACCTCCAGGTGGAGGAACCACACGGCAGAGTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp CAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTTCAATTTTTATAGCGAGAAGGTGGCTCCCTaGAGAGGTGGCCTCTGCGTC +
Preference number: 4 (lower is better)
Translates to: QERKGDQGSSLEAFNFYSEKVAP*RGGLCV
Trigger: GACGCAGAGGCCACCTCTCCAGGGAGCCACCTTCTC...GCTATAAAAATTGAAAGCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp CCCTTGGGCCCCAACATTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGGCGATTCCAGCATGGTaGACACTTACGGTGGGACTC +
Preference number: 4 (lower is better)
Translates to: PLGPNINTLTGEEGRPGQAIPAW*TLTVGL
Trigger: GAGTCCCACCGTAAGTGTCCACCATGCTGGAATCGC...CTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAATGTTGGGGCCCAAGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp CTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTTCAATTTTAAGCGAAGGCCCCTTTaGATGCGAGCCAGGGCCAGC +
Preference number: 4 (lower is better)
Translates to: LLQERKGDQGSSLEAFNFKRRPL*MRARAS
Trigger: GCTGGCCCTGGCTCGCATCCAAAGGGGCCTTCGCTT...AAAATTGAAAGCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp TTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTTCTGTTTCCTTGCGGGCTaGGGGCGCCTTCTCCACCTC +
Preference number: 4 (lower is better)
Translates to: LILLQERKGDQGSSLEAFCFLAG*GRLLHL
Trigger: GAGGTGGAGAAGGCGCCCCCAGCCCGCAAGGAAACA...GAAAGCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp ATTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTTGTGGTCTCTGACACCTaGCTCCAGGCCCTGGGCTCC +
Preference number: 4 (lower is better)
Translates to: INTLTGEEGRPGQLSGSFVVSDT*LQALGS
Trigger: GGAGCCCAGGGCCTGGAGCCAGGTGTCAGAGACCAC...AAAGCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp GACAGAGTTGCTGTTCAGAGCCATGCGGCGCTGCCTGGCCAGACCCGGCTACTAGAGAAGAAGTACTTCTaGATGATGTCGGAGAGGACA +
Preference number: 4 (lower is better)
Translates to: DRVAVQSHAALPGQTRLLEKKYF*MMSERT
Trigger: TGTCCTCTCCGACATCATCCAGAAGTACTTCTTCTC...TAGTAGCCGGGTCTGGCCAGGCAGCGCCGCATGGCTCTGAACAGCAACTCTGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp GTGAGCGAGGCTGCCTTCCTCGAGCCCTTGGGCCCCAACATTAATACTCTTACACCGTGGTGCCATTCTTaGGTAGGTAATTGGCTGGGT +
Preference number: 4 (lower is better)
Translates to: VSEAAFLEPLGPNINTLTPWCHS*VGNWLG
Trigger: ACCCAGCCAATTACCTACTCAAGAATGGCACCACGG...TGTAAGAGTATTAATGTTGGGGCCCAAGGGCTCGAGGAAGGCAGCCTCGCTCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp AACATTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTCTGGGACCGTCTTCTaGGTCCGACTTGGGGAGCCT +
Preference number: 4 (lower is better)
Translates to: NINTLTGEEGRPGQLSGSSGTVF*VRLGEP
Trigger: AGGCTCCCCAAGTCGGACTCAGAAGACGGTCCCAGA...GCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAATGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp CAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTTCAATTTTTATAGCAGAGGATGTGGTCTCTaGCACCTGGCTCCAGGCCCT +
Preference number: 4 (lower is better)
Translates to: QERKGDQGSSLEAFNFYSRGCGL*HLAPGP
Trigger: AGGGCCTGGAGCCAGGTGTCAGAGACCACATCCTCT...GCTATAAAAATTGAAAGCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp TTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTTCGGACGCAGCCTTCAGTaGAGCAGTCCTCTGGGTCCT +
Preference number: 4 (lower is better)
Translates to: LILLQERKGDQGSSLEAFGRSLQ*SSPLGP
Trigger: AGGACCCAGAGGACTGCTTCACTGAAGGCTGCGTCC...GAAAGCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp CTACTCTCTCCTCCCCTCTGTGCAGTTCTAGAAAAGGAGGCCATGCTAAGCCAATGTTGGCCACGAGGCTaGCCAGTGAGACGTCCACAA +
Preference number: 4 (lower is better)
Translates to: LLSPPLCAVLEKEAMLSQCWPRG*PVRRPQ
Trigger: TTGTGGACGTCTCACTGGTCAGCCTCGTGGCCAACA...TTGGCTTAGCATGGCCTCCTTTTCTAGAACTGCACAGAGGGGAGGAGAGAGTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS-3UTR TCA 90 bp TCCTCTCCCATGGGGGATGGATGGCTTGTCACCTTCCAGGTCACAGAACCAGGCCCACGTTGTCAAAGTTaGCTTTCACCTTGGTCCAGT +
Preference number: 4 (lower is better)
Translates to: SSPMGDGWLVTFQVTEPGPRCQS*LSPWSS
Trigger: ACTGGACCAAGGTGAAAGTCAACTTTGACAACGTGG...GCCTGGTTCTGTGACCTGGAAGGTGACAAGCCATCCATCCCCCATGGGAGAGGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp GCTCTGAGAGCAGAGTTCTCCATTGACACCTGCTCAGGGTTAGGAAGAGGCCGTCTTGTTTTTCAGCCATaGGCTTCTCGATGGCCGCCA +
Preference number: 4 (lower is better)
Translates to: ALRAEFSIDTCSGLGRGRLVFQP*ASRWPP
Trigger: TGGCGGCCATCGAGAAGCGCATGGCTGAAAAACAAG...ACGGCCTCTTCCTAACCCTGAGCAGGTGTCAATGGAGAACTCTGCTCTCAGAGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp GCTCTGAGAGCAGAGTTCTCCATTGACACCTGCTCAGGGTTAGGAAGAGGCCGTCGGAGGGTCGTGTTGTaGCATGAACACACAGTTGGT +
Preference number: 4 (lower is better)
Translates to: ALRAEFSIDTCSGLGRGRRRVVL*HEHTVG
Trigger: ACCAACTGTGTGTTCATGGCACAACACGACCCTCCG...ACGGCCTCTTCCTAACCCTGAGCAGGTGTCAATGGAGAACTCTGCTCTCAGAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp AACATTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTCTGCACATGGAGCCTaGGGTGTCAGCATCTGGGGC +
Preference number: 4 (lower is better)
Translates to: NINTLTGEEGRPGQLSGSSAHGA*GVSIWG
Trigger: GCCCCAGATGCTGACACCGCAGGCTCCATGTGCAGA...GCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAATGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp ACTCGCCCACTCGCGTGTGTGAGTGAAGTGCTTAGGCCTTCCTGGCTCCTCAGCGTAACATCGAAGGCCTaGTTGGTCACAATGTCGAAT +
Preference number: 4 (lower is better)
Translates to: TRPLACVSEVLRPSWLLSVTSKA*LVTMSN
Trigger: ATTCGACATTGTGACCAAGCAGGCCTTCGATGTTAC...GCTGAGGAGCCAGGAAGGCCTAAGCACTTCACTCACACACGCGAGTGGGCGAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp AACATTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTGGAGAGGGGACCGCTaGGCCGGGAGAAGTTCTCAT +
Preference number: 4 (lower is better)
Translates to: NINTLTGEEGRPGQLSGSWRGDR*AGRSSH
Trigger: ATGAGAACTTCTCCCGGCGCAGCGGTCCCCTCTCCA...GCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAATGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp CCCTTGGGCCCCAACATTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGAATGAGCTCTCGGGGTaGGTTGCCATAGAGATCTGG +
Preference number: 4 (lower is better)
Translates to: PLGPNINTLTGEEGRPGQNELSG*VAIEIW
Trigger: CCAGATCTCTATGGCAACCCACCCCGAGAGCTCATT...CTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAATGTTGGGGCCCAAGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp GTGAGCGAGGCTGCCTTCCTCGAGCCCTTGGGCCCCAACATTAATACTCTTACAGCTGATTCAATGCTCTaGGACCGTCTTCTGAGTCCG +
Preference number: 4 (lower is better)
Translates to: VSEAAFLEPLGPNINTLTADSML*DRLLSP
Trigger: CGGACTCAGAAGACGGTCCCAGAGCATTGAATCAGC...TGTAAGAGTATTAATGTTGGGGCCCAAGGGCTCGAGGAAGGCAGCCTCGCTCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp CAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTTCAATTTTTATAGCAGCAGCGATGTGCGGTaGCTCTCGCTCTCTCCTGCT +
Preference number: 4 (lower is better)
Translates to: QERKGDQGSSLEAFNFYSSSDVR*LSLSPA
Trigger: AGCAGGAGAGAGCGAGAGCCACCGCACATCGCTGCT...GCTATAAAAATTGAAAGCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp GAACTCTGCCGTGTGGTTCCTCCACCTGGAGGTTCCCCTGTCACCTCCAGAGCTCTGGAAGTAGTAGTATaGGTCAAGGGCGATGATCTT +
Preference number: 4 (lower is better)
Translates to: ELCRVVPPPGGSPVTSRALEVVV*VKGDDL
Trigger: AAGATCATCGCCCTTGACCCATACTACTACTTCCAG...AGCTCTGGAGGTGACAGGGGAACCTCCAGGTGGAGGAACCACACGGCAGAGTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp CAGAAGACGCCTAGGATAGTCAGACCCTGGGCTGGGCCCAGATGCCACACTGTCTCGAATATGAAACCCTaGTACTTGTTCAGAGGCCGT +
Preference number: 4 (lower is better)
Translates to: QKTPRIVRPWAGPRCHTVSNMKP*YLFRGR
Trigger: ACGGCCTCTGAACAAGTACCAGGGTTTCATATTCGA...GACAGTGTGGCATCTGGGCCCAGCCCAGGGTCTGACTATCCTAGGCGTCTTCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp TCTGAAGACGGTTGGAGCCCCAGTGGGCATCTCCTTGACACACGGCCAGAGGCAGAGAAGAAGTACTTCTaGATGATGTCGGAGAGGACA +
Preference number: 4 (lower is better)
Translates to: SEDGWSPSGHLLDTRPEAEKKYF*MMSERT
Trigger: TGTCCTCTCCGACATCATCCAGAAGTACTTCTTCTC...TGCCTCTGGCCGTGTGTCAAGGAGATGCCCACTGGGGCTCCAACCGTCTTCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp CCAGAGGAGCCTGGGAAATGGAGACCGCTCCCTTTGCTGCCACAGCTGGACACAAATTTCTCCTCCATCTaGATCTTCAGGGCATCCATC +
Preference number: 4 (lower is better)
Translates to: PEEPGKWRPLPLLPQLDTNFSSI*IFRASI
Trigger: GATGGATGCCCTGAAGATCCAGATGGAGGAGAAATT...TGTGTCCAGCTGTGGCAGCAAAGGGAGCGGTCTCCATTTCCCAGGCTCCTCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp CACAGAACTCTGCCGTGTGGTTCCTCCACCTGGAGGTTCCCCTGTCACCTCCAGAATTTCTCCTCCATCTaGATCTTCAGGGCATCCATC +
Preference number: 4 (lower is better)
Translates to: HRTLPCGSSTWRFPCHLQNFSSI*IFRASI
Trigger: GATGGATGCCCTGAAGATCCAGATGGAGGAGAAATT...CTGGAGGTGACAGGGGAACCTCCAGGTGGAGGAACCACACGGCAGAGTTCTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp GCAGAGTTCTCCATTGACACCTGCTCAGGGTTAGGAAGAGGCCGTGTGAACTGCGGTCGTGTTGTGCCATaGACACACAGTTGGTTAGGA +
Preference number: 4 (lower is better)
Translates to: AEFSIDTCSGLGRGRVNCGRVVP*THSWLG
Trigger: TCCTAACCAACTGTGTGTTCATGGCACAACACGACC...GCAGTTCACACGGCCTCTTCCTAACCCTGAGCAGGTGTCAATGGAGAACTCTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp TTCTCCTCCCTTGGCCTTGGGACAGGGCCTGCCACATCTCAGAAGCAAGCTACGACACAAAGACATAGGTaGACATCTTGTCGGCGTACT +
Preference number: 4 (lower is better)
Translates to: FSSLGLGTGPATSQKQATTQRHR*TSCRRT
Trigger: AGTACGCCGACAAGATGTTCACCTATGTCTTTGTGT...CGTAGCTTGCTTCTGAGATGTGGCAGGCCCTGTCCCAAGGCCAAGGGAGGAGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp ATTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTTCATGCCCTCGAATCGTaGCAAAGCCCTCAGGGGTCG +
Preference number: 4 (lower is better)
Translates to: INTLTGEEGRPGQLSGSFHALES*QSPQGS
Trigger: CGACCCCTGAGGGCTTTGTCACGATTCGAGGGCATG...AAAGCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp CTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTTCAATTTTTCATCATGTAGGCAATaGGTCCCTCTCGCTCGGGGG +
Preference number: 4 (lower is better)
Translates to: LLQERKGDQGSSLEAFNFSSCRQ*VPLARG
Trigger: CCCCCGAGCGAGAGGGACTCATTGCCTACATGATGA...AAAATTGAAAGCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp GCTCTGAGAGCAGAGTTCTCCATTGACACCTGCTCAGGGTTAGGAAGAGGCCGTGCTCTGAGTAGTTCTTaGCGAAGAGCTGCATACCCA +
Preference number: 4 (lower is better)
Translates to: ALRAEFSIDTCSGLGRGRALSSS*RRAAYP
Trigger: TGGGTATGCAGCTCTTCGGCAAGAACTACTCAGAGC...ACGGCCTCTTCCTAACCCTGAGCAGGTGTCAATGGAGAACTCTGCTCTCAGAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp AACATTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCCTCTTGCTGCCAGTCTaGCTGAGACGTACTGGCCTC +
Preference number: 4 (lower is better)
Translates to: NINTLTGEEGRPGQLSGSLLLPV*LRRTGL
Trigger: GAGGCCAGTACGTCTCAGGCAGACTGGCAGCAAGAG...GCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAATGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp CAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTTCAATTTTTATAGCTGCGGTAGCAGGTCTTaGGCAGTCTCCACCAGACCT +
Preference number: 4 (lower is better)
Translates to: QERKGDQGSSLEAFNFYSCGSRS*AVSTRP
Trigger: AGGTCTGGTGGAGACTGCGCAAGACCTGCTACCGCA...GCTATAAAAATTGAAAGCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp CAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTTCAATTTTTATAGCTCCTCCCACTGCGGCTaGTCTTCATACCCTCTGGAG +
Preference number: 4 (lower is better)
Translates to: QERKGDQGSSLEAFNFYSSSHCG*SSYPLE
Trigger: CTCCAGAGGGTATGAAGAGCAGCCGCAGTGGGAGGA...GCTATAAAAATTGAAAGCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp CAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTTCAATTTTTATAGCTGTCCATACAGTGGATaGGGTCCCCGCTCACCATGG +
Preference number: 4 (lower is better)
Translates to: QERKGDQGSSLEAFNFYSCPYSG*GPRSPW
Trigger: CCATGGTGAGCGGGGACCGCATCCACTGTATGGACA...GCTATAAAAATTGAAAGCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp CTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTTCAATTTTACCTACGGAAGCTGCTaGTGCCCCGAGGTAACAGGA +
Preference number: 4 (lower is better)
Translates to: LLQERKGDQGSSLEAFNFTYGSC*CPEVTG
Trigger: TCCTGTTACCTCGGGGCACCAGCAGCTTCCGTAGGT...AAAATTGAAAGCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp TTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTTCACCTACGGAAGCTGCTaGTGCCCCGAGGTAACAGGA +
Preference number: 4 (lower is better)
Translates to: LILLQERKGDQGSSLEAFTYGSC*CPEVTG
Trigger: TCCTGTTACCTCGGGGCACCAGCAGCTTCCGTAGGT...GAAAGCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp AACATTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCCTTCTGAGTCCGACTTaGGGAGCCTGTCATCTCCGC +
Preference number: 4 (lower is better)
Translates to: NINTLTGEEGRPGQLSGSLLSPT*GACHLR
Trigger: GCGGAGATGACAGGCTCCCCAAGTCGGACTCAGAAG...GCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAATGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp GCAGAGTTCTCCATTGACACCTGCTCAGGGTTAGGAAGAGGCCGTGTGAACTGCCCACCAGACACAACTTaGGATTCCTGCTGTTTGCTG +
Preference number: 4 (lower is better)
Translates to: AEFSIDTCSGLGRGRVNCPPDTT*DSCCLL
Trigger: CAGCAAACAGCAGGAATCCCAAGTTGTGTCTGGTGG...GCAGTTCACACGGCCTCTTCCTAACCCTGAGCAGGTGTCAATGGAGAACTCTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS-3UTR CCA 90 bp AACATTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCCGGCTTCAGAGGATGTaGTCTCTGACACCTGGCTCC +
Preference number: 4 (lower is better)
Translates to: NINTLTGEEGRPGQLSGSRLQRM*SLTPGS
Trigger: GGAGCCAGGTGTCAGAGACCACATCCTCTGAAGCCG...GCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAATGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp CAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTTCAATTTTTATAGCAGTGAAGCAGTCCTCTaGGTCCTTGACGTCCTCCCC +
Preference number: 4 (lower is better)
Translates to: QERKGDQGSSLEAFNFYSSEAVL*VLDVLP
Trigger: GGGGAGGACGTCAAGGACCCAGAGGACTGCTTCACT...GCTATAAAAATTGAAAGCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp AGAGGAGCCTGGGAAATGGAGACCGCTCCCTTTGCTGCCACAGCTGGACACAGTGAGAAGAAGTACTTCTaGATGATGTCGGAGAGGACA +
Preference number: 4 (lower is better)
Translates to: RGAWEMETAPFAATAGHSEKKYF*MMSERT
Trigger: TGTCCTCTCCGACATCATCCAGAAGTACTTCTTCTC...ACTGTGTCCAGCTGTGGCAGCAAAGGGAGCGGTCTCCATTTCCCAGGCTCCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp TTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTTCACGGTGGGAAGGACGTaGAGGAGATGGAAGAGCTGG +
Preference number: 4 (lower is better)
Translates to: LILLQERKGDQGSSLEAFTVGRT*RRWKSW
Trigger: CCAGCTCTTCCATCTCCTCCACGTCCTTCCCACCGT...GAAAGCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp TTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTTCATGATTTGGCCAGCTTaGAGACCCGCAGCAGACGGA +
Preference number: 4 (lower is better)
Translates to: LILLQERKGDQGSSLEAFMIWPA*RPAADG
Trigger: TCCGTCTGCTGCGGGTCTTCAAGCTGGCCAAATCAT...GAAAGCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp CTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTTCAATTTTTCGGTGCCTCAGCTCTaGGTAGTTCTTGCCGAAGAG +
Preference number: 4 (lower is better)
Translates to: LLQERKGDQGSSLEAFNFSVPQL*VVLAEE
Trigger: CTCTTCGGCAAGAACTACTCAGAGCTGAGGCACCGA...AAAATTGAAAGCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp CACAGAACTCTGCCGTGTGGTTCCTCCACCTGGAGGTTCCCCTGTCACCTCCAGTCACAATGTCGAATATaGAACCCTGGTACTTGTTCA +
Preference number: 4 (lower is better)
Translates to: HRTLPCGSSTWRFPCHLQSQCRI*NPGTCS
Trigger: TGAACAAGTACCAGGGTTTCATATTCGACATTGTGA...CTGGAGGTGACAGGGGAACCTCCAGGTGGAGGAACCACACGGCAGAGTTCTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp ATTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTTTCATCATGTAGGCAATaGGTCCCTCTCGCTCGGGGG +
Preference number: 4 (lower is better)
Translates to: INTLTGEEGRPGQLSGSFSSCRQ*VPLARG
Trigger: CCCCCGAGCGAGAGGGACTCATTGCCTACATGATGA...AAAGCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp AACATTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTACGGAAGCTGCTGGTaGCCCGAGGTAACAGGAAGT +
Preference number: 4 (lower is better)
Translates to: NINTLTGEEGRPGQLSGSYGSCW*PEVTGS
Trigger: ACTTCCTGTTACCTCGGGGCACCAGCAGCTTCCGTA...GCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAATGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp CTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTTCAATTTTGGAGGACTCGGAAGGTaGGTAAGGCTGAGACATTGC +
Preference number: 4 (lower is better)
Translates to: LLQERKGDQGSSLEAFNFGGLGR*VRLRHC
Trigger: GCAATGTCTCAGCCTTACGCACCTTCCGAGTCCTCC...AAAATTGAAAGCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp AACATTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTCTTGCCGAAGAGCTaGATACCCACCACGGCGAAG +
Preference number: 4 (lower is better)
Translates to: NINTLTGEEGRPGQLSGSFLPKS*IPTTAK
Trigger: CTTCGCCGTGGTGGGTATGCAGCTCTTCGGCAAGAA...GCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAATGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp TTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTTCTTGCTCCAGGAGGTCTaGGGTGTTGGTCATGTCAGC +
Preference number: 4 (lower is better)
Translates to: LILLQERKGDQGSSLEAFLLQEV*GVGHVS
Trigger: GCTGACATGACCAACACCGCAGACCTCCTGGAGCAA...GAAAGCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp AACATTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCGATGGACATCCAGAGTaGGCAGCACTCCCAGATGAG +
Preference number: 4 (lower is better)
Translates to: NINTLTGEEGRPGQLSGSDGHPE*AALPDE
Trigger: CTCATCTGGGAGTGCTGCCCACTCTGGATGTCCATC...GCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAATGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp ATTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTTAGTGAAGCAGTCCTCTaGGTCCTTGACGTCCTCCCC +
Preference number: 4 (lower is better)
Translates to: INTLTGEEGRPGQLSGSFSEAVL*VLDVLP
Trigger: GGGGAGGACGTCAAGGACCCAGAGGACTGCTTCACT...AAAGCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp AACATTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCAGGTCCCCTTCGGTCTaGTTGATGCACCTACCGAAC +
Preference number: 4 (lower is better)
Translates to: NINTLTGEEGRPGQLSGSRSPSV*LMHLPN
Trigger: GTTCGGTAGGTGCATCAACCAGACCGAAGGGGACCT...GCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAATGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp CAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTTCAATTTTTATAGCACTCTCCAGTCACGTTaGAGGACTCACACTCGCTCT +
Preference number: 4 (lower is better)
Translates to: QERKGDQGSSLEAFNFYSTLQSR*RTHTRS
Trigger: AGAGCGAGTGTGAGTCCTTCAACGTGACTGGAGAGT...GCTATAAAAATTGAAAGCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp AACATTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTGTTCCAGCTGTTGGTaGAGTAATAGTGGCGCAGGG +
Preference number: 4 (lower is better)
Translates to: NINTLTGEEGRPGQLSGSCSSCW*SNSGAG
Trigger: CCCTGCGCCACTATTACTTCACCAACAGCTGGAACA...GCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAATGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp CCCTTGGGCCCCAACATTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCAGGCCTGGAATAACTaGAATCGTTTTCAGAGCTCT +
Preference number: 4 (lower is better)
Translates to: PLGPNINTLTGEEGRPGQQAWNN*NRFQSS
Trigger: AGAGCTCTGAAAACGATTTCAGTTATTCCAGGCCTG...CTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAATGTTGGGGCCCAAGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117911.8
CDS-3UTR GCA 90 bp AACATTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCCGGAGGGTCGTGTTGTaGCATGAACACACAGTTGGT +
Preference number: 4 (lower is better)
Translates to: NINTLTGEEGRPGQLSGSRRVVL*HEHTVG
Trigger: ACCAACTGTGTGTTCATGGCACAACACGACCCTCCG...GCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAATGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp TTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTTCCGGAGGGTCGTGTTGTaGCATGAACACACAGTTGGT +
Preference number: 4 (lower is better)
Translates to: LILLQERKGDQGSSLEAFRRVVL*HEHTVG
Trigger: ACCAACTGTGTGTTCATGGCACAACACGACCCTCCG...GAAAGCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp ATTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTTTTGCTCCAGGAGGTCTaGGGTGTTGGTCATGTCAGC +
Preference number: 4 (lower is better)
Translates to: INTLTGEEGRPGQLSGSFLLQEV*GVGHVS
Trigger: GCTGACATGACCAACACCGCAGACCTCCTGGAGCAA...AAAGCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp GTGAGCGAGGCTGCCTTCCTCGAGCCCTTGGGCCCCAACATTAATACTCTTACAGTAACATCGAAGGCCTaGTTGGTCACAATGTCGAAT +
Preference number: 4 (lower is better)
Translates to: VSEAAFLEPLGPNINTLTVTSKA*LVTMSN
Trigger: ATTCGACATTGTGACCAAGCAGGCCTTCGATGTTAC...TGTAAGAGTATTAATGTTGGGGCCCAAGGGCTCGAGGAAGGCAGCCTCGCTCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp CAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTTCAATTTTTATAGCCTTGGGATTCCTGTTTaGTGGACTCTTCCTCCTCCG +
Preference number: 4 (lower is better)
Translates to: QERKGDQGSSLEAFNFYSLGIPV*WTLPPP
Trigger: CGGAGGAGGAAGAGTCCAGCAAACAGGAATCCCAAG...GCTATAAAAATTGAAAGCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp AACATTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCGATCTGGCAGCTTTTTaGAGGCCTGTAGGTCCAGCT +
Preference number: 4 (lower is better)
Translates to: NINTLTGEEGRPGQLSGSDLAAF*RPVGPA
Trigger: AGCTGGACCTACAGGCCTCCAAAAAGCTGCCAGATC...GCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAATGTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp CCCTTGGGCCCCAACATTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTGGAAGTAGTAGTATaGGTCAAGGGCGATGATCTT +
Preference number: 4 (lower is better)
Translates to: PLGPNINTLTGEEGRPGQLEVVV*VKGDDL
Trigger: AAGATCATCGCCCTTGACCCATACTACTACTTCCAG...CTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAATGTTGGGGCCCAAGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp CCCTTGGGCCCCAACATTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGTCGAATATGAAACCCTaGTACTTGTTCAGAGGCCGT +
Preference number: 4 (lower is better)
Translates to: PLGPNINTLTGEEGRPGQSNMKP*YLFRGR
Trigger: ACGGCCTCTGAACAAGTACCAGGGTTTCATATTCGA...CTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAATGTTGGGGCCCAAGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp ATTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTTTTGCCATTGAGGACATaGCCAGGAGCTGAGGTTCCA +
Preference number: 4 (lower is better)
Translates to: INTLTGEEGRPGQLSGSFLPLRT*PGAEVP
Trigger: TGGAACCTCAGCTCCTGGTCATGTCCTCAATGGCAA...AAAGCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp ATTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTTACTCTCCAGTCACGTTaGAGGACTCACACTCGCTCT +
Preference number: 4 (lower is better)
Translates to: INTLTGEEGRPGQLSGSFTLQSR*RTHTRS
Trigger: AGAGCGAGTGTGAGTCCTTCAACGTGACTGGAGAGT...AAAGCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp CAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTTCAATTTTTATAGCAAGGATTGGCCGCCATaGATTTCTCCTCCATCTGGA +
Preference number: 4 (lower is better)
Translates to: QERKGDQGSSLEAFNFYSKDWPP*ISPPSG
Trigger: TCCAGATGGAGGAGAAATTCATGGCGGCCAATCCTT...GCTATAAAAATTGAAAGCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp ATTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTTGCTCTCGCTCTCTCCTaGTGTACTGTTCTCGTCATC +
Preference number: 4 (lower is better)
Translates to: INTLTGEEGRPGQLSGSFALALS*CTVLVI
Trigger: GATGACGAGAACAGTACAGCAGGAGAGAGCGAGAGC...AAAGCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp CTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTTCAATTTTGTTGCCATAGAGATCTaGCAGCTTTTTGGAGGCCTG +
Preference number: 4 (lower is better)
Translates to: LLQERKGDQGSSLEAFNFVAIEI*QLFGGL
Trigger: CAGGCCTCCAAAAAGCTGCCAGATCTCTATGGCAAC...AAAATTGAAAGCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp TTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTTCTCCTTCTCTCATGGTTaGTTACTGGGGCCAAAGGAG +
Preference number: 4 (lower is better)
Translates to: LILLQERKGDQGSSLEAFSFSHG*LLGPKE
Trigger: CTCCTTTGGCCCCAGTAACCAACCATGAGAGAAGGA...GAAAGCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp CTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTTCAATTTTAAATACTCAATGAACTaGGTGGCCTCCGGGTCGAAC +
Preference number: 4 (lower is better)
Translates to: LLQERKGDQGSSLEAFNFKYSMN*VASGSN
Trigger: GTTCGACCCGGAGGCCACCCAGTTCATTGAGTATTT...AAAATTGAAAGCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp TTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTTCAAATACTCAATGAACTaGGTGGCCTCCGGGTCGAAC +
Preference number: 4 (lower is better)
Translates to: LILLQERKGDQGSSLEAFKYSMN*VASGSN
Trigger: GTTCGACCCGGAGGCCACCCAGTTCATTGAGTATTT...GAAAGCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp AACATTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCCTCGAGCTAGAATCTTaGCCAGAGACTCAAAGGTGT +
Preference number: 4 (lower is better)
Translates to: NINTLTGEEGRPGQLSGSLELES*PETQRC
Trigger: ACACCTTTGAGTCTCTGGTCAAGATTCTAGCTCGAG...GCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAATGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp TTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTTCCTCGAGCTAGAATCTTaGCCAGAGACTCAAAGGTGT +
Preference number: 4 (lower is better)
Translates to: LILLQERKGDQGSSLEAFLELES*PETQRC
Trigger: ACACCTTTGAGTCTCTGGTCAAGATTCTAGCTCGAG...GAAAGCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp CAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTTCAATTTTTATAGCCTTGAAGGTCATCTCTaGCGTGAAGATTCCCGTGAA +
Preference number: 4 (lower is better)
Translates to: QERKGDQGSSLEAFNFYSLEGHL*REDSRE
Trigger: TTCACGGGAATCTTCACGGCAGAGATGACCTTCAAG...GCTATAAAAATTGAAAGCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp CAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTTCAATTTTTATAGCTTGCTCCTTCTCTCATaGTTGGTTACTGGGGCCAAA +
Preference number: 4 (lower is better)
Translates to: QERKGDQGSSLEAFNFYSLLLLS*LVTGAK
Trigger: TTTGGCCCCAGTAACCAACCATGAGAGAAGGAGCAA...GCTATAAAAATTGAAAGCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp ATTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTTAAATACTCAATGAACTaGGTGGCCTCCGGGTCGAAC +
Preference number: 4 (lower is better)
Translates to: INTLTGEEGRPGQLSGSFKYSMN*VASGSN
Trigger: GTTCGACCCGGAGGCCACCCAGTTCATTGAGTATTT...AAAGCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp ATTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTTCCACGTTGTCAAAGTTaGCTTTCACCTTGGTCCAGT +
Preference number: 4 (lower is better)
Translates to: INTLTGEEGRPGQLSGSFPRCQS*LSPWSS
Trigger: ACTGGACCAAGGTGAAAGTCAACTTTGACAACGTGG...AAAGCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR TCA 90 bp CTGCCTTCCTCGAGCCCTTGGGCCCCAACATTAATACTCTTACAGGAGAGGAAGTCACAATGTCGAATATaGAACCCTGGTACTTGTTCA +
Preference number: 4 (lower is better)
Translates to: LPSSSPWAPTLILLQERKSQCRI*NPGTCS
Trigger: TGAACAAGTACCAGGGTTTCATATTCGACATTGTGA...CTTCCTCTCCTGTAAGAGTATTAATGTTGGGGCCCAAGGGCTCGAGGAAGGCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CCA 90 bp AACATTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCAATTTCTCCTCCATCTaGATCTTCAGGGCATCCATC +
Preference number: 4 (lower is better)
Translates to: NINTLTGEEGRPGQLSGSNFSSI*IFRASI
Trigger: GATGGATGCCCTGAAGATCCAGATGGAGGAGAAATT...GCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAATGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR GCA 90 bp ATTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTTGAAGAGCCGACAAATTaGCTAGCTTTATATTCTCTG +
Preference number: 4 (lower is better)
Translates to: INTLTGEEGRPGQLSGSFEEPTN*LALYSL
Trigger: CAGAGAATATAAAGCTAGGCAATTTGTCGGCTCTTC...AAAGCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117911.8
CDS-3UTR CAA 90 bp GCCCCCTCCTTCAGCACTGCCAGGAGCGTCCAGCCCTCCGACAGCTCGGCGAGGGCGCCCACCAGCGCGTaGACCACCACCCTCATGCCC +
Preference number: 5 (lower is better)
Translates to: APSFSTARSVQPSDSSARAPTSA*TTTLMP
Trigger: GGGCATGAGGGTGGTGGTCAACGCGCTGGTGGGCGC...CCTCGCCGAGCTGTCGGAGGGCTGGACGCTCCTGGCAGTGCTGAAGGAGGGGGC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS CCA 90 bp TCTGGGGGTGGTGGGGACCTGGGAGCGGCGATACAGCTGGGCAGCTaGCTGTGGGTGGCAAGAGCCGCGGGCTTCTTAGGTCGCCGCCGC +
Preference number: 5 (lower is better)
Translates to: SGGGGDLGAAIQLGS*LWVARAAGFLGRRR
Trigger: GCGGCGGCGACCTAAGAAGCCCGCGGCTCTTGCCACCCACAGCCAGCTGCCCAGCTGTATCGCCGCTCCCAGGTCCCCACCACCCCCAGA
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS CCA 90 bp CATGACCAGGAGCTGAGGTTCCAAAGCCGGGCTGCCCTTGGGTGCTaGGACGGCGCAGGGGCCAGGGCACCAGCAGCGATGTGCGGTGGC +
Preference number: 5 (lower is better)
Translates to: HDQELRFQSRAALGC*DGAGARAPAAMCGG
Trigger: GCCACCGCACATCGCTGCTGGTGCCCTGGCCCCTGCGCCGTCCCAGCACCCAAGGGCAGCCCGGCTTTGGAACCTCAGCTCCTGGTCATG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS GCA 90 bp CGTTGCCGTGCCCCGGGCTCCTCAAAGCCATCTGCACATGGAGCCTaGGGTGTCAGCATCTGGGGCCCACCCGGCTCCTCTGACGGCGTG +
Preference number: 5 (lower is better)
Translates to: RCRAPGSSKPSAHGA*GVSIWGPPGSSDGV
Trigger: CACGCCGTCAGAGGAGCCGGGTGGGCCCCAGATGCTGACACCGCAGGCTCCATGTGCAGATGGCTTTGAGGAGCCCGGGGCACGGCAACG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS CCA 90 bp TGTTTCCTTGCGGGCTGGGGGCGCCTTCTCCACCTCTGGGGGTGGTaGGGACCTGGGAGCGGCGATACAGCTGGGCAGCTGGCTGTGGGT +
Preference number: 5 (lower is better)
Translates to: CFLAGWGRLLHLWGW*GPGSGDTAGQLAVG
Trigger: ACCCACAGCCAGCTGCCCAGCTGTATCGCCGCTCCCAGGTCCCCACCACCCCCAGAGGTGGAGAAGGCGCCCCCAGCCCGCAAGGAAACA
69% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp GCCCCCTCCTTCAGCACTGCCAGGAGCGTCCAGCCCTCCGACAGCTCGGCGAGGCCCGAGGTCTGGGATTaGCTCCAGGAGGTCTGCGGT +
Preference number: 5 (lower is better)
Translates to: APSFSTARSVQPSDSSARPEVWD*LQEVCG
Trigger: ACCGCAGACCTCCTGGAGCAAATCCCAGACCTCGGG...CCTCGCCGAGCTGTCGGAGGGCTGGACGCTCCTGGCAGTGCTGAAGGAGGGGGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS TCA 90 bp GTCGCCGCCGCAGGAGCCCGCAGCAGAAGTCCCAGGTGGTCCGCTTaGCAAAGCGAAGGCCCCTTTGGATGCGAGCCAGGGCCAGCTGGA +
Preference number: 5 (lower is better)
Translates to: VAAAGARSRSPRWSA*QSEGPFGCEPGPAG
Trigger: TCCAGCTGGCCCTGGCTCGCATCCAAAGGGGCCTTCGCTTTGTCAAGCGGACCACCTGGGACTTCTGCTGCGGGCTCCTGCGGCGGCGAC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS TCA 90 bp CCCGGGGCCCGGGGCTCCGCTTCCCGCTCTTGCTGCCAGTCTGCCTaGGACGTACTGGCCTCGGCTTCAGAGGATGTGGTCTCTGACACC +
Preference number: 5 (lower is better)
Translates to: PGARGSASRSCCQSA*DVLASASEDVVSDT
Trigger: GGTGTCAGAGACCACATCCTCTGAAGCCGAGGCCAGTACGTCTCAGGCAGACTGGCAGCAAGAGCGGGAAGCGGAGCCCCGGGCCCCGGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS GCA 90 bp CCCGCTTGCTGGCGGAAGAGGAAGGAAGCATGCTTCACCGAGCGCTaGAGGAGGTGCCTCCGGAAGGCCCGCTGGATGACCGTGGCCGAC +
Preference number: 5 (lower is better)
Translates to: PACWRKRKEACFTER*RRCLRKARWMTVAD
Trigger: GTCGGCCACGGTCATCCAGCGGGCCTTCCGGAGGCACCTCCTGCAGCGCTCGGTGAAGCATGCTTCCTTCCTCTTCCGCCAGCAAGCGGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp GTTGCTGTTCAGAGCCATGCGGCGCTGCCTGGCCAGACCCGGCTACTAGGGTGTAAAGCCGGGCTGCCCTaGGGTGCTGGGACGGCGCAG +
Preference number: 5 (lower is better)
Translates to: VAVQSHAALPGQTRLLGCKAGLP*GAGTAQ
Trigger: CTGCGCCGTCCCAGCACCCAAGGGCAGCCCGGCTTT...ACACCCTAGTAGCCGGGTCTGGCCAGGCAGCGCCGCATGGCTCTGAACAGCAAC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp GAGCCATGCGGCGCTGCCTGGCCAGACCCGGCTACTAGGGTGTGCCAGGCCTCTAAAGCGAAGGCCCCTTaGGATGCGAGCCAGGGCCAG +
Preference number: 5 (lower is better)
Translates to: EPCGAAWPDPATRVCQASKAKAP*DASQGQ
Trigger: CTGGCCCTGGCTCGCATCCAAAGGGGCCTTCGCTTT...AGAGGCCTGGCACACCCTAGTAGCCGGGTCTGGCCAGGCAGCGCCGCATGGCTC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS TCA 90 bp ACATGGAGCCTGCGGTGTCAGCATCTGGGGCCCACCCGGCTCCTCTaGCGGCGTGGTCGTGTCTGGGGGTCTGTCCAGCACTATAGGGCG +
Preference number: 5 (lower is better)
Translates to: TWSLRCQHLGPTRLL*RRGRVWGSVQHYRA
Trigger: CGCCCTATAGTGCTGGACAGACCCCCAGACACGACCACGCCGTCAGAGGAGCCGGGTGGGCCCCAGATGCTGACACCGCAGGCTCCATGT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS GCA 90 bp CAGAGCGCTGGTGAGGACACTGACGGCGCTGAGTGCCCGTTGCCGTaGCCCGGGCTCCTCAAAGCCATCTGCACATGGAGCCTGCGGTGT +
Preference number: 5 (lower is better)
Translates to: QSAGEDTDGAECPLP*PGLLKAICTWSLRC
Trigger: ACACCGCAGGCTCCATGTGCAGATGGCTTTGAGGAGCCCGGGGCACGGCAACGGGCACTCAGCGCCGTCAGTGTCCTCACCAGCGCTCTG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS CCA 90 bp GCATGCTTCACCGAGCGCTGCAGGAGGTGCCTCCGGAAGGCCCGCTaGATGACCGTGGCCGACACCTCCTCATGTTTTCGCCGCAGGGTG +
Preference number: 5 (lower is better)
Translates to: ACFTERCRRCLRKAR*MTVADTSSCFRRRV
Trigger: CACCCTGCGGCGAAAACATGAGGAGGTGTCGGCCACGGTCATCCAGCGGGCCTTCCGGAGGCACCTCCTGCAGCGCTCGGTGAAGCATGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp GAGCCATGCGGCGCTGCCTGGCCAGACCCGGCTACTAGGGTGTGCCAGGCCTCTTCCCAGGTGGTCCGCTaGACAAAGCGAAGGCCCCTT +
Preference number: 5 (lower is better)
Translates to: EPCGAAWPDPATRVCQASSQVVR*TKRRPL
Trigger: AAGGGGCCTTCGCTTTGTCAAGCGGACCACCTGGGA...AGAGGCCTGGCACACCCTAGTAGCCGGGTCTGGCCAGGCAGCGCCGCATGGCTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS GCA 90 bp CTTGGGTGCTGGGACGGCGCAGGGGCCAGGGCACCAGCAGCGATGTaGGGTGGCTCTCGCTCTCTCCTGCTGTACTGTTCTCGTCATCTG +
Preference number: 5 (lower is better)
Translates to: LGCWDGAGARAPAAM*GGSRSLLLYCSRHL
Trigger: CAGATGACGAGAACAGTACAGCAGGAGAGAGCGAGAGCCACCGCACATCGCTGCTGGTGCCCTGGCCCCTGCGCCGTCCCAGCACCCAAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS GCA 90 bp TCTTCCAGAGCGCTGGTGAGGACACTGACGGCGCTGAGTGCCCGTTaGCGTGCCCCGGGCTCCTCAAAGCCATCTGCACATGGAGCCTGC +
Preference number: 5 (lower is better)
Translates to: SSRALVRTLTALSAR*RAPGSSKPSAHGAC
Trigger: GCAGGCTCCATGTGCAGATGGCTTTGAGGAGCCCGGGGCACGGCAACGGGCACTCAGCGCCGTCAGTGTCCTCACCAGCGCTCTGGAAGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS GCA 90 bp TGGCGGAAGAGGAAGGAAGCATGCTTCACCGAGCGCTGCAGGAGGTaGCTCCGGAAGGCCCGCTGGATGACCGTGGCCGACACCTCCTCA +
Preference number: 5 (lower is better)
Translates to: WRKRKEACFTERCRR*LRKARWMTVADTSS
Trigger: TGAGGAGGTGTCGGCCACGGTCATCCAGCGGGCCTTCCGGAGGCACCTCCTGCAGCGCTCGGTGAAGCATGCTTCCTTCCTCTTCCGCCA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp CAGGAGCGTCCAGCCCTCCGACAGCTCGGCGAGGTAGGTAGGAGCAGCCAGCCCGGCCGAACCACGGGCTaGTTTTTCAGCCATGCGCTT +
Preference number: 5 (lower is better)
Translates to: QERPALRQLGEVGRSSQPGRTTG*FFSHAL
Trigger: AAGCGCATGGCTGAAAAACAAGCCCGTGGTTCGGCC...GGGCTGGCTGCTCCTACCTACCTCGCCGAGCTGTCGGAGGGCTGGACGCTCCTG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS-3UTR CAA 90 bp GTTGCTGTTCAGAGCCATGCGGCGCTGCCTGGCCAGACCCGGCTACTAGGGTGTTCGAACCGTGTTTCCTaGCGGGCTGGGGGCGCCTTC +
Preference number: 5 (lower is better)
Translates to: VAVQSHAALPGQTRLLGCSNRVS*RAGGAF
Trigger: GAAGGCGCCCCCAGCCCGCAAGGAAACACGGTTCGA...ACACCCTAGTAGCCGGGTCTGGCCAGGCAGCGCCGCATGGCTCTGAACAGCAAC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp CACAGAACTCTGCCGTGTGGTTCCTCCACCTGGAGGTTCCCCTGTCACCTCCAGGCGCCCACCAGCGCGTaGACCACCACCCTCATGCCC +
Preference number: 5 (lower is better)
Translates to: HRTLPCGSSTWRFPCHLQAPTSA*TTTLMP
Trigger: GGGCATGAGGGTGGTGGTCAACGCGCTGGTGGGCGC...CTGGAGGTGACAGGGGAACCTCCAGGTGGAGGAACCACACGGCAGAGTTCTGTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp ACTCGCCCACTCGCGTGTGTGAGTGAAGTGCTTAGGCCTTCCTGGCTCCTCAGCGCGCCCACCAGCGCGTaGACCACCACCCTCATGCCC +
Preference number: 5 (lower is better)
Translates to: TRPLACVSEVLRPSWLLSAPTSA*TTTLMP
Trigger: GGGCATGAGGGTGGTGGTCAACGCGCTGGTGGGCGC...GCTGAGGAGCCAGGAAGGCCTAAGCACTTCACTCACACACGCGAGTGGGCGAGT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS CCA 90 bp GGGGCTCCGCTTCCCGCTCTTGCTGCCAGTCTGCCTGAGACGTACTaGCCTCGGCTTCAGAGGATGTGGTCTCTGACACCTGGCTCCAGG +
Preference number: 5 (lower is better)
Translates to: GAPLPALAASLPETY*PRLQRMWSLTPGSR
Trigger: CCTGGAGCCAGGTGTCAGAGACCACATCCTCTGAAGCCGAGGCCAGTACGTCTCAGGCAGACTGGCAGCAAGAGCGGGAAGCGGAGCCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp CACCCTGTCTGCAGCCAGCCCGGCACCTGTCTTAAGGCTCCAAGGCCATCTGCATCGAACCGTGTTTCCTaGCGGGCTGGGGGCGCCTTC +
Preference number: 5 (lower is better)
Translates to: HPVCSQPGTCLKAPRPSASNRVS*RAGGAF
Trigger: GAAGGCGCCCCCAGCCCGCAAGGAAACACGGTTCGA...TGCAGATGGCCTTGGAGCCTTAAGACAGGTGCCGGGCTGGCTGCAGACAGGGTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS-3UTR CAA 90 bp GACCCTGGGCTGGGCCCAGATGCCACACTGTCTCCTCTCCCATGGGGGATGGATCTCCGCTTCCCGCTCTaGCTGCCAGTCTGCCTGAGA +
Preference number: 5 (lower is better)
Translates to: DPGLGPDATLSPLPWGMDLRFPL*LPVCLR
Trigger: TCTCAGGCAGACTGGCAGCAAGAGCGGGAAGCGGAG...ATCCATCCCCCATGGGAGAGGAGACAGTGTGGCATCTGGGCCCAGCCCAGGGTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS CCA 90 bp GTGCTGGGACGGCGCAGGGGCCAGGGCACCAGCAGCGATGTGCGGTaGCTCTCGCTCTCTCCTGCTGTACTGTTCTCGTCATCTGCAAAA +
Preference number: 5 (lower is better)
Translates to: VLGRRRGQGTSSDVR*LSLSPAVLFSSSAK
Trigger: TTTTGCAGATGACGAGAACAGTACAGCAGGAGAGAGCGAGAGCCACCGCACATCGCTGCTGGTGCCCTGGCCCCTGCGCCGTCCCAGCAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp AGTTGCTGTTCAGAGCCATGCGGCGCTGCCTGGCCAGACCCGGCTACTAGGGTGAGGGCCAGCTGGAGGTaGTTCATCTCCCCATCCTCG +
Preference number: 5 (lower is better)
Translates to: SCCSEPCGAAWPDPATRVRASWR*FISPSS
Trigger: CGAGGATGGGGAGATGAACAACCTCCAGCTGGCCCT...CACCCTAGTAGCCGGGTCTGGCCAGGCAGCGCCGCATGGCTCTGAACAGCAACT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp GAGCCATGCGGCGCTGCCTGGCCAGACCCGGCTACTAGGGTGTGCCAGGCCTCTTACCCAGCCCCCACGTaGTCAAAGTTGACTTTCACC +
Preference number: 5 (lower is better)
Translates to: EPCGAAWPDPATRVCQASYPAPT*SKLTFT
Trigger: GGTGAAAGTCAACTTTGACAACGTGGGGGCTGGGTA...AGAGGCCTGGCACACCCTAGTAGCCGGGTCTGGCCAGGCAGCGCCGCATGGCTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp GAGCCATGCGGCGCTGCCTGGCCAGACCCGGCTACTAGGGTGTGCCAGGCCTCTGCCACGAAGAGCAGGTaGATCTTGGCCAAGATGTTG +
Preference number: 5 (lower is better)
Translates to: EPCGAAWPDPATRVCQASATKSR*ILAKML
Trigger: CAACATCTTGGCCAAGATCAACCTGCTCTTCGTGGC...AGAGGCCTGGCACACCCTAGTAGCCGGGTCTGGCCAGGCAGCGCCGCATGGCTC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp AGTTGCTGTTCAGAGCCATGCGGCGCTGCCTGGCCAGACCCGGCTACTAGGGTGAACGTGCGAATCCCCTaGGCTCCTCGGATCAGCCTG +
Preference number: 5 (lower is better)
Translates to: SCCSEPCGAAWPDPATRVNVRIP*APRISL
Trigger: CAGGCTGATCCGAGGAGCCAAGGGGATTCGCACGTT...CACCCTAGTAGCCGGGTCTGGCCAGGCAGCGCCGCATGGCTCTGAACAGCAACT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp CCTCTCCCATGGGGGATGGATGGCTTGTCACCTTCCAGGTCACAGAACCAGGCCAGGAGGAGGCCGATGTaGAAGAGGGCGGGCAGGGAC +
Preference number: 5 (lower is better)
Translates to: PLPWGMDGLSPSRSQNQARRRPM*KRAGRD
Trigger: GTCCCTGCCCGCCCTCTTCAACATCGGCCTCCTCCT...GGCCTGGTTCTGTGACCTGGAAGGTGACAAGCCATCCATCCCCCATGGGAGAGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp ACTCGCCCACTCGCGTGTGTGAGTGAAGTGCTTAGGCCTTCCTGGCTCCTCAGCAGGAGGAGGCCGATGTaGAAGAGGGCGGGCAGGGAC +
Preference number: 5 (lower is better)
Translates to: TRPLACVSEVLRPSWLLSRRRPM*KRAGRD
Trigger: GTCCCTGCCCGCCCTCTTCAACATCGGCCTCCTCCT...GCTGAGGAGCCAGGAAGGCCTAAGCACTTCACTCACACACGCGAGTGGGCGAGT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS TCA 90 bp CATCTGCAAAATCTGCCTCGGAGCCTTGGTCCCGTCGCCGGAATGTaGAAATGCTCCCTCGGCTGGAGCGGGGCCTCATGGATGTCCGGC +
Preference number: 5 (lower is better)
Translates to: HLQNLPRSLGPVAGM*KCSLGWSGASWMSG
Trigger: GCCGGACATCCATGAGGCCCCGCTCCAGCCGAGGGAGCATTTTCACATTCCGGCGACGGGACCAAGGCTCCGAGGCAGATTTTGCAGATG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS GCA 90 bp CTGGGATTTGCTCCAGGAGGTCTGCGGTGTTGGTCATGTCAGCGGTaGTACCCTCGGAGTAACTGTCCTCGGGAGTCTCACCGCACCCCG +
Preference number: 5 (lower is better)
Translates to: LGFAPGGLRCWSCQR*YPRSNCPRESHRTP
Trigger: CGGGGTGCGGTGAGACTCCCGAGGACAGTTACTCCGAGGGTAGCACCGCTGACATGACCAACACCGCAGACCTCCTGGAGCAAATCCCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS CCA 90 bp CGTCCTCCCCGAGGTCTGGGATTTGCTCCAGGAGGTCTGCGGTGTTaGTCATGTCAGCGGTGCTACCCTCGGAGTAACTGTCCTCGGGAG +
Preference number: 5 (lower is better)
Translates to: RPPRGLGFAPGGLRC*SCQRCYPRSNCPRE
Trigger: CTCCCGAGGACAGTTACTCCGAGGGTAGCACCGCTGACATGACCAACACCGCAGACCTCCTGGAGCAAATCCCAGACCTCGGGGAGGACG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp ACTTGCCCGCAGTGCCCCCTCCTTCAGCACTGCCAGGAGCGTCCAGCCCTCCGACTCCTTCTCTCATGGTaGGTTACTGGGGCCAAAGGA +
Preference number: 5 (lower is better)
Translates to: TCPQCPLLQHCQERPALRLLLSW*VTGAKG
Trigger: TCCTTTGGCCCCAGTAACCAACCATGAGAGAAGGAG...TCGGAGGGCTGGACGCTCCTGGCAGTGCTGAAGGAGGGGGCACTGCGGGCAAGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS-3UTR CAA 90 bp CCGCAGTGCCCCCTCCTTCAGCACTGCCAGGAGCGTCCAGCCCTCCGACAGCTCAGTCGTTTCCTCCTCTaGCTCCTTCTCTCATGGTTG +
Preference number: 5 (lower is better)
Translates to: PQCPLLQHCQERPALRQLSRFLL*LLLSWL
Trigger: CAACCATGAGAGAAGGAGCAAGAGGAGGAAACGACT...GAGCTGTCGGAGGGCTGGACGCTCCTGGCAGTGCTGAAGGAGGGGGCACTGCGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS-3UTR CAA 90 bp GAGCCATGCGGCGCTGCCTGGCCAGACCCGGCTACTAGGGTGTGCCAGGCCTCTAACTTCACCTTCTGCTaGATGGACATCCAGAGTGGG +
Preference number: 5 (lower is better)
Translates to: EPCGAAWPDPATRVCQASNFTFC*MDIQSG
Trigger: CCCACTCTGGATGTCCATCAAGCAGAAGGTGAAGTT...AGAGGCCTGGCACACCCTAGTAGCCGGGTCTGGCCAGGCAGCGCCGCATGGCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp CCAGAGGAGCCTGGGAAATGGAGACCGCTCCCTTTGCTGCCACAGCTGGACACAAAAGCGAAGGCCCCTTaGGATGCGAGCCAGGGCCAG +
Preference number: 5 (lower is better)
Translates to: PEEPGKWRPLPLLPQLDTKAKAP*DASQGQ
Trigger: CTGGCCCTGGCTCGCATCCAAAGGGGCCTTCGCTTT...TGTGTCCAGCTGTGGCAGCAAAGGGAGCGGTCTCCATTTCCCAGGCTCCTCTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp CACCCTGTCTGCAGCCAGCCCGGCACCTGTCTTAAGGCTCCAAGGCCATCTGCATCCCAGGTGGTCCGCTaGACAAAGCGAAGGCCCCTT +
Preference number: 5 (lower is better)
Translates to: HPVCSQPGTCLKAPRPSASQVVR*TKRRPL
Trigger: AAGGGGCCTTCGCTTTGTCAAGCGGACCACCTGGGA...TGCAGATGGCCTTGGAGCCTTAAGACAGGTGCCGGGCTGGCTGCAGACAGGGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS-3UTR CAA 90 bp TTCTCCTCCCTTGGCCTTGGGACAGGGCCTGCCACATCTCAGAAGCAAGCTACGTCGAACCGTGTTTCCTaGCGGGCTGGGGGCGCCTTC +
Preference number: 5 (lower is better)
Translates to: FSSLGLGTGPATSQKQATSNRVS*RAGGAF
Trigger: GAAGGCGCCCCCAGCCCGCAAGGAAACACGGTTCGA...CGTAGCTTGCTTCTGAGATGTGGCAGGCCCTGTCCCAAGGCCAAGGGAGGAGAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp ACTCGCCCACTCGCGTGTGTGAGTGAAGTGCTTAGGCCTTCCTGGCTCCTCAGCCAGTCCTCTGGGTCCTaGACGTCCTCCCCGAGGTCT +
Preference number: 5 (lower is better)
Translates to: TRPLACVSEVLRPSWLLSQSSGS*TSSPRS
Trigger: AGACCTCGGGGAGGACGTCAAGGACCCAGAGGACTG...GCTGAGGAGCCAGGAAGGCCTAAGCACTTCACTCACACACGCGAGTGGGCGAGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp CAGAAGACGCCTAGGATAGTCAGACCCTGGGCTGGGCCCAGATGCCACACTGTCCAGTCCTCTGGGTCCTaGACGTCCTCCCCGAGGTCT +
Preference number: 5 (lower is better)
Translates to: QKTPRIVRPWAGPRCHTVQSSGS*TSSPRS
Trigger: AGACCTCGGGGAGGACGTCAAGGACCCAGAGGACTG...GACAGTGTGGCATCTGGGCCCAGCCCAGGGTCTGACTATCCTAGGCGTCTTCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp AGTTGCTGTTCAGAGCCATGCGGCGCTGCCTGGCCAGACCCGGCTACTAGGGTGAGTGTCCTCAGGGACTaGATGGGACCCATCTCGGCA +
Preference number: 5 (lower is better)
Translates to: SCCSEPCGAAWPDPATRVSVLRD*MGPISA
Trigger: TGCCGAGATGGGTCCCATCAAGTCCCTGAGGACACT...CACCCTAGTAGCCGGGTCTGGCCAGGCAGCGCCGCATGGCTCTGAACAGCAACT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp ACTTGCCCGCAGTGCCCCCTCCTTCAGCACTGCCAGGAGCGTCCAGCCCTCCGAAACTCTCCAGTCACGTaGAAGGACTCACACTCGCTC +
Preference number: 5 (lower is better)
Translates to: TCPQCPLLQHCQERPALRNSPVT*KDSHSL
Trigger: GAGCGAGTGTGAGTCCTTCAACGTGACTGGAGAGTT...TCGGAGGGCTGGACGCTCCTGGCAGTGCTGAAGGAGGGGGCACTGCGGGCAAGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS-3UTR CAA 90 bp ACTTGCCCGCAGTGCCCCCTCCTTCAGCACTGCCAGGAGCGTCCAGCCCTCCGATACCCAGCCCCCACGTaGTCAAAGTTGACTTTCACC +
Preference number: 5 (lower is better)
Translates to: TCPQCPLLQHCQERPALRYPAPT*SKLTFT
Trigger: GGTGAAAGTCAACTTTGACAACGTGGGGGCTGGGTA...TCGGAGGGCTGGACGCTCCTGGCAGTGCTGAAGGAGGGGGCACTGCGGGCAAGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS-3UTR CAA 90 bp TCCTCTCCCATGGGGGATGGATGGCTTGTCACCTTCCAGGTCACAGAACCAGGCAGGAGGAGGCCGATGTaGAAGAGGGCGGGCAGGGAC +
Preference number: 5 (lower is better)
Translates to: SSPMGDGWLVTFQVTEPGRRRPM*KRAGRD
Trigger: GTCCCTGCCCGCCCTCTTCAACATCGGCCTCCTCCT...GCCTGGTTCTGTGACCTGGAAGGTGACAAGCCATCCATCCCCCATGGGAGAGGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS TCA 90 bp GTCCACGGTGCTGTTTCTTTTGCCATTGAGGACATGACCAGGAGCTaGGGTTCCAAAGCCGGGCTGCCCTTGGGTGCTGGGACGGCGCAG +
Preference number: 5 (lower is better)
Translates to: VHGAVSFAIEDMTRS*GSKAGLPLGAGTAQ
Trigger: CTGCGCCGTCCCAGCACCCAAGGGCAGCCCGGCTTTGGAACCTCAGCTCCTGGTCATGTCCTCAATGGCAAAAGAAACAGCACCGTGGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS TCA 90 bp GGGGACCGCTGCGCCGGGAGAAGTTCTCATTCATCATGTAGGCAATaGGTCCCTCTCGCTCGGGGGCATCCTCATCAGAGAGGCCACTGC +
Preference number: 5 (lower is better)
Translates to: GDRCAGRSSHSSCRQ*VPLARGHPHQRGHC
Trigger: GCAGTGGCCTCTCTGATGAGGATGCCCCCGAGCGAGAGGGACTCATTGCCTACATGATGAATGAGAACTTCTCCCGGCGCAGCGGTCCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS GCA 90 bp GGGCCAGGGCACCAGCAGCGATGTGCGGTGGCTCTCGCTCTCTCCTaGTGTACTGTTCTCGTCATCTGCAAAATCTGCCTCGGAGCCTTG +
Preference number: 5 (lower is better)
Translates to: GPGHQQRCAVALALS*CTVLVICKICLGAL
Trigger: CAAGGCTCCGAGGCAGATTTTGCAGATGACGAGAACAGTACAGCAGGAGAGAGCGAGAGCCACCGCACATCGCTGCTGGTGCCCTGGCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS GCA 90 bp AAGCAGTCCTCTGGGTCCTTGACGTCCTCCCCGAGGTCTGGGATTTaGTCCAGGAGGTCTGCGGTGTTGGTCATGTCAGCGGTGCTACCC +
Preference number: 5 (lower is better)
Translates to: KQSSGSLTSSPRSGI*SRRSAVLVMSAVLP
Trigger: GGGTAGCACCGCTGACATGACCAACACCGCAGACCTCCTGGAGCAAATCCCAGACCTCGGGGAGGACGTCAAGGACCCAGAGGACTGCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS CCA 90 bp GCAGCAAGGACAACGTCGGACGCAGCCTTCAGTGAAGCAGTCCTCTaGGTCCTTGACGTCCTCCCCGAGGTCTGGGATTTGCTCCAGGAG +
Preference number: 5 (lower is better)
Translates to: AARTTSDAAFSEAVL*VLDVLPEVWDLLQE
Trigger: CTCCTGGAGCAAATCCCAGACCTCGGGGAGGACGTCAAGGACCCAGAGGACTGCTTCACTGAAGGCTGCGTCCGACGTTGTCCTTGCTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp CTGAAGACGGTTGGAGCCCCAGTGGGCATCTCCTTGACACACGGCCAGAGGCAGCTCGGCGATGGTGGCTaGGTTTTGCTCCTCGTAAGC +
Preference number: 5 (lower is better)
Translates to: LKTVGAPVGISLTHGQRQLGDGG*VLLLVS
Trigger: GCTTACGAGGAGCAAAACCAAGCCACCATCGCCGAG...CTGCCTCTGGCCGTGTGTCAAGGAGATGCCCACTGGGGCTCCAACCGTCTTCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp CACCCTGTCTGCAGCCAGCCCGGCACCTGTCTTAAGGCTCCAAGGCCATCTGCATCTTCTGAGTCCGACTaGGGGAGCCTGTCATCTCCG +
Preference number: 5 (lower is better)
Translates to: HPVCSQPGTCLKAPRPSASSESD*GSLSSP
Trigger: CGGAGATGACAGGCTCCCCAAGTCGGACTCAGAAGA...TGCAGATGGCCTTGGAGCCTTAAGACAGGTGCCGGGCTGGCTGCAGACAGGGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS-3UTR CAA 90 bp GAACTCTGCCGTGTGGTTCCTCCACCTGGAGGTTCCCCTGTCACCTCCAGAGCTAGGGCCAGCTGGAGGTaGTTCATCTCCCCATCCTCG +
Preference number: 5 (lower is better)
Translates to: ELCRVVPPPGGSPVTSRARASWR*FISPSS
Trigger: CGAGGATGGGGAGATGAACAACCTCCAGCTGGCCCT...AGCTCTGGAGGTGACAGGGGAACCTCCAGGTGGAGGAACCACACGGCAGAGTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp TCCTCTCCCATGGGGGATGGATGGCTTGTCACCTTCCAGGTCACAGAACCAGGCCTCCGCTTCCCGCTCTaGCTGCCAGTCTGCCTGAGA +
Preference number: 5 (lower is better)
Translates to: SSPMGDGWLVTFQVTEPGLRFPL*LPVCLR
Trigger: TCTCAGGCAGACTGGCAGCAAGAGCGGGAAGCGGAG...GCCTGGTTCTGTGACCTGGAAGGTGACAAGCCATCCATCCCCCATGGGAGAGGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp AGAGGAGCCTGGGAAATGGAGACCGCTCCCTTTGCTGCCACAGCTGGACACAGTCCCGAGGTCTGGGATTaGCTCCAGGAGGTCTGCGGT +
Preference number: 5 (lower is better)
Translates to: RGAWEMETAPFAATAGHSPEVWD*LQEVCG
Trigger: ACCGCAGACCTCCTGGAGCAAATCCCAGACCTCGGG...ACTGTGTCCAGCTGTGGCAGCAAAGGGAGCGGTCTCCATTTCCCAGGCTCCTCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp GACAGAGTTGCTGTTCAGAGCCATGCGGCGCTGCCTGGCCAGACCCGGCTACTAAGTGTCCTCAGGGACTaGATGGGACCCATCTCGGCA +
Preference number: 5 (lower is better)
Translates to: DRVAVQSHAALPGQTRLLSVLRD*MGPISA
Trigger: TGCCGAGATGGGTCCCATCAAGTCCCTGAGGACACT...TAGTAGCCGGGTCTGGCCAGGCAGCGCCGCATGGCTCTGAACAGCAACTCTGTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp GTTGCTGTTCAGAGCCATGCGGCGCTGCCTGGCCAGACCCGGCTACTAGGGTGTCGCAGGGCAGCCATCTaGACAATACACTCTCCTGTG +
Preference number: 5 (lower is better)
Translates to: VAVQSHAALPGQTRLLGCRRAAI*TIHSPV
Trigger: CACAGGAGAGTGTATTGTCAAGATGGCTGCCCTGCG...ACACCCTAGTAGCCGGGTCTGGCCAGGCAGCGCCGCATGGCTCTGAACAGCAAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp CCTCTCCCATGGGGGATGGATGGCTTGTCACCTTCCAGGTCACAGAACCAGGCCAACGTGCGAATCCCCTaGGCTCCTCGGATCAGCCTG +
Preference number: 5 (lower is better)
Translates to: PLPWGMDGLSPSRSQNQANVRIP*APRISL
Trigger: CAGGCTGATCCGAGGAGCCAAGGGGATTCGCACGTT...GGCCTGGTTCTGTGACCTGGAAGGTGACAAGCCATCCATCCCCCATGGGAGAGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS TCA 90 bp CCCATGGGTGAGGCTGAGCTGATTCAATGCTCTGGGACCGTCTTCTaGGTCCGACTTGGGGAGCCTGTCATCTCCGCCATCCTCTGTCCC +
Preference number: 5 (lower is better)
Translates to: PMGEAELIQCSGTVF*VRLGEPVISAILCP
Trigger: GGGACAGAGGATGGCGGAGATGACAGGCTCCCCAAGTCGGACTCAGAAGACGGTCCCAGAGCATTGAATCAGCTCAGCCTCACCCATGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS TCA 90 bp TGTAGTCCGACGCACGCACTGGGAGGTTATCACTGGTGGCCCTCGTaGCGCTGTCATAGGACGGTGGGAAGGACGTGGAGGAGATGGAAG +
Preference number: 5 (lower is better)
Translates to: CSPTHALGGYHWWPS*RCHRTVGRTWRRWK
Trigger: CTTCCATCTCCTCCACGTCCTTCCCACCGTCCTATGACAGCGTCACGAGGGCCACCAGTGATAACCTCCCAGTGCGTGCGTCGGACTACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS GCA 90 bp GTCCTTGACGTCCTCCCCGAGGTCTGGGATTTGCTCCAGGAGGTCTaGGGTGTTGGTCATGTCAGCGGTGCTACCCTCGGAGTAACTGTC +
Preference number: 5 (lower is better)
Translates to: VLDVLPEVWDLLQEV*GVGHVSGATLGVTV
Trigger: GACAGTTACTCCGAGGGTAGCACCGCTGACATGACCAACACCGCAGACCTCCTGGAGCAAATCCCAGACCTCGGGGAGGACGTCAAGGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp CAGAAGACGCCTAGGATAGTCAGACCCTGGGCTGGGCCCAGATGCCACACTGTCGGCCGAACCACGGGCTaGTTTTTCAGCCATGCGCTT +
Preference number: 5 (lower is better)
Translates to: QKTPRIVRPWAGPRCHTVGRTTG*FFSHAL
Trigger: AAGCGCATGGCTGAAAAACAAGCCCGTGGTTCGGCC...GACAGTGTGGCATCTGGGCCCAGCCCAGGGTCTGACTATCCTAGGCGTCTTCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp GTTGCTGTTCAGAGCCATGCGGCGCTGCCTGGCCAGACCCGGCTACTAGGGTGTCTCCTTCTCTCATGGTaGGTTACTGGGGCCAAAGGA +
Preference number: 5 (lower is better)
Translates to: VAVQSHAALPGQTRLLGCLLLSW*VTGAKG
Trigger: TCCTTTGGCCCCAGTAACCAACCATGAGAGAAGGAG...ACACCCTAGTAGCCGGGTCTGGCCAGGCAGCGCCGCATGGCTCTGAACAGCAAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp CCTCTCCCATGGGGGATGGATGGCTTGTCACCTTCCAGGTCACAGAACCAGGCCTCTTCTGAGTCCGACTaGGGGAGCCTGTCATCTCCG +
Preference number: 5 (lower is better)
Translates to: PLPWGMDGLSPSRSQNQASSESD*GSLSSP
Trigger: CGGAGATGACAGGCTCCCCAAGTCGGACTCAGAAGA...GGCCTGGTTCTGTGACCTGGAAGGTGACAAGCCATCCATCCCCCATGGGAGAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp CTGAAGACGGTTGGAGCCCCAGTGGGCATCTCCTTGACACACGGCCAGAGGCAGTACTCCAGCAGAACCTaGATGGTCTTCCGCTCCTCC +
Preference number: 5 (lower is better)
Translates to: LKTVGAPVGISLTHGQRQYSSRT*MVFRSS
Trigger: GGAGGAGCGGAAGACCATCAAGGTTCTGCTGGAGTA...CTGCCTCTGGCCGTGTGTCAAGGAGATGCCCACTGGGGCTCCAACCGTCTTCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp CACAGAACTCTGCCGTGTGGTTCCTCCACCTGGAGGTTCCCCTGTCACCTCCAGGCAAAGCCTAAGGTGTaGGCCACGAGGCTGACCAGT +
Preference number: 5 (lower is better)
Translates to: HRTLPCGSSTWRFPCHLQAKPKV*ATRLTS
Trigger: ACTGGTCAGCCTCGTGGCCAACACCTTAGGCTTTGC...CTGGAGGTGACAGGGGAACCTCCAGGTGGAGGAACCACACGGCAGAGTTCTGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp GAACTCTGCCGTGTGGTTCCTCCACCTGGAGGTTCCCCTGTCACCTCCAGAGCTGCAAAGCCTAAGGTGTaGGCCACGAGGCTGACCAGT +
Preference number: 5 (lower is better)
Translates to: ELCRVVPPPGGSPVTSRAAKPKV*ATRLTS
Trigger: ACTGGTCAGCCTCGTGGCCAACACCTTAGGCTTTGC...AGCTCTGGAGGTGACAGGGGAACCTCCAGGTGGAGGAACCACACGGCAGAGTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp GACCCTGGGCTGGGCCCAGATGCCACACTGTCTCCTCTCCCATGGGGGATGGATATGAAACCCTGGTACTaGTTCAGAGGCCGTGGGATG +
Preference number: 5 (lower is better)
Translates to: DPGLGPDATLSPLPWGMDMKPWY*FRGRGM
Trigger: CATCCCACGGCCTCTGAACAAGTACCAGGGTTTCAT...ATCCATCCCCCATGGGAGAGGAGACAGTGTGGCATCTGGGCCCAGCCCAGGGTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp CGGCTACTAGGGTGTGCCAGGCCTCTACCAGCCAGGGTTGCTCTAGCCGCCTCTGCCACGAAGAGCAGGTaGATCTTGGCCAAGATGTTG +
Preference number: 5 (lower is better)
Translates to: RLLGCARPLPARVALAASATKSR*ILAKML
Trigger: CAACATCTTGGCCAAGATCAACCTGCTCTTCGTGGC...AGAGGCGGCTAGAGCAACCCTGGCTGGTAGAGGCCTGGCACACCCTAGTAGCCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp CTGAAGACGGTTGGAGCCCCAGTGGGCATCTCCTTGACACACGGCCAGAGGCAGCGCAGGGCAGCCATCTaGACAATACACTCTCCTGTG +
Preference number: 5 (lower is better)
Translates to: LKTVGAPVGISLTHGQRQRRAAI*TIHSPV
Trigger: CACAGGAGAGTGTATTGTCAAGATGGCTGCCCTGCG...CTGCCTCTGGCCGTGTGTCAAGGAGATGCCCACTGGGGCTCCAACCGTCTTCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp CTGAAGACGGTTGGAGCCCCAGTGGGCATCTCCTTGACACACGGCCAGAGGCAGATGAGGCTTATCTGGTaGGGCTTGGCGATGCGGAGT +
Preference number: 5 (lower is better)
Translates to: LKTVGAPVGISLTHGQRQMRLIW*GLAMRS
Trigger: ACTCCGCATCGCCAAGCCCAACCAGATAAGCCTCAT...CTGCCTCTGGCCGTGTGTCAAGGAGATGCCCACTGGGGCTCCAACCGTCTTCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS CCA 90 bp CCTGCTGTACTGTTCTCGTCATCTGCAAAATCTGCCTCGGAGCCTTaGTCCCGTCGCCGGAATGTGAAAATGCTCCCTCGGCTGGAGCGG +
Preference number: 5 (lower is better)
Translates to: PAVLFSSSAKSASEP*SRRRNVKMLPRLER
Trigger: CCGCTCCAGCCGAGGGAGCATTTTCACATTCCGGCGACGGGACCAAGGCTCCGAGGCAGATTTTGCAGATGACGAGAACAGTACAGCAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS CCA 90 bp TTCAGTGAAGCAGTCCTCTGGGTCCTTGACGTCCTCCCCGAGGTCTaGGATTTGCTCCAGGAGGTCTGCGGTGTTGGTCATGTCAGCGGT +
Preference number: 5 (lower is better)
Translates to: FSEAVLWVLDVLPEV*DLLQEVCGVGHVSG
Trigger: ACCGCTGACATGACCAACACCGCAGACCTCCTGGAGCAAATCCCAGACCTCGGGGAGGACGTCAAGGACCCAGAGGACTGCTTCACTGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS CCA 90 bp CGCTGTCATAGGACGGTGGGAAGGACGTGGAGGAGATGGAAGAGCTaGAGAGGGGACCGCTGCGCCGGGAGAAGTTCTCATTCATCATGT +
Preference number: 5 (lower is better)
Translates to: RCHRTVGRTWRRWKS*RGDRCAGRSSHSSC
Trigger: ACATGATGAATGAGAACTTCTCCCGGCGCAGCGGTCCCCTCTCCAGCTCTTCCATCTCCTCCACGTCCTTCCCACCGTCCTATGACAGCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp TCCTCTCCCATGGGGGATGGATGGCTTGTCACCTTCCAGGTCACAGAACCAGGCGGCCGAACCACGGGCTaGTTTTTCAGCCATGCGCTT +
Preference number: 5 (lower is better)
Translates to: SSPMGDGWLVTFQVTEPGGRTTG*FFSHAL
Trigger: AAGCGCATGGCTGAAAAACAAGCCCGTGGTTCGGCC...GCCTGGTTCTGTGACCTGGAAGGTGACAAGCCATCCATCCCCCATGGGAGAGGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp ACTCGCCCACTCGCGTGTGTGAGTGAAGTGCTTAGGCCTTCCTGGCTCCTCAGCAGGCGGAGGGTCGTGTaGTGCCATGAACACACAGTT +
Preference number: 5 (lower is better)
Translates to: TRPLACVSEVLRPSWLLSRRRVV*CHEHTV
Trigger: AACTGTGTGTTCATGGCACAACACGACCCTCCGCCT...GCTGAGGAGCCAGGAAGGCCTAAGCACTTCACTCACACACGCGAGTGGGCGAGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp GAACTCTGCCGTGTGGTTCCTCCACCTGGAGGTTCCCCTGTCACCTCCAGAGCTGCCTCCACGGAACCATaGGTGCCATTGAGCTCAGTA +
Preference number: 5 (lower is better)
Translates to: ELCRVVPPPGGSPVTSRAASTEP*VPLSSV
Trigger: TACTGAGCTCAATGGCACCAATGGTTCCGTGGAGGC...AGCTCTGGAGGTGACAGGGGAACCTCCAGGTGGAGGAACCACACGGCAGAGTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp ACTCGCCCACTCGCGTGTGTGAGTGAAGTGCTTAGGCCTTCCTGGCTCCTCAGCGATGGTGGCTTGGTTTaGCTCCTCGTAAGCCATGGC +
Preference number: 5 (lower is better)
Translates to: TRPLACVSEVLRPSWLLSDGGLV*LLVSHG
Trigger: GCCATGGCTTACGAGGAGCAAAACCAAGCCACCATC...GCTGAGGAGCCAGGAAGGCCTAAGCACTTCACTCACACACGCGAGTGGGCGAGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp CACAGAACTCTGCCGTGTGGTTCCTCCACCTGGAGGTTCCCCTGTCACCTCCAGGATGGTGGCTTGGTTTaGCTCCTCGTAAGCCATGGC +
Preference number: 5 (lower is better)
Translates to: HRTLPCGSSTWRFPCHLQDGGLV*LLVSHG
Trigger: GCCATGGCTTACGAGGAGCAAAACCAAGCCACCATC...CTGGAGGTGACAGGGGAACCTCCAGGTGGAGGAACCACACGGCAGAGTTCTGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp AGAGGAGCCTGGGAAATGGAGACCGCTCCCTTTGCTGCCACAGCTGGACACAGTCTCGGCGATGGTGGCTaGGTTTTGCTCCTCGTAAGC +
Preference number: 5 (lower is better)
Translates to: RGAWEMETAPFAATAGHSLGDGG*VLLLVS
Trigger: GCTTACGAGGAGCAAAACCAAGCCACCATCGCCGAG...ACTGTGTCCAGCTGTGGCAGCAAAGGGAGCGGTCTCCATTTCCCAGGCTCCTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp TCCTCTCCCATGGGGGATGGATGGCTTGTCACCTTCCAGGTCACAGAACCAGGCCTCGGCGATGGTGGCTaGGTTTTGCTCCTCGTAAGC +
Preference number: 5 (lower is better)
Translates to: SSPMGDGWLVTFQVTEPGLGDGG*VLLLVS
Trigger: GCTTACGAGGAGCAAAACCAAGCCACCATCGCCGAG...GCCTGGTTCTGTGACCTGGAAGGTGACAAGCCATCCATCCCCCATGGGAGAGGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp TCTGAAGACGGTTGGAGCCCCAGTGGGCATCTCCTTGACACACGGCCAGAGGCATACTCCAGCAGAACCTaGATGGTCTTCCGCTCCTCC +
Preference number: 5 (lower is better)
Translates to: SEDGWSPSGHLLDTRPEAYSSRT*MVFRSS
Trigger: GGAGGAGCGGAAGACCATCAAGGTTCTGCTGGAGTA...TGCCTCTGGCCGTGTGTCAAGGAGATGCCCACTGGGGCTCCAACCGTCTTCAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp CCTCTCCCATGGGGGATGGATGGCTTGTCACCTTCCAGGTCACAGAACCAGGCCCGCAGGGCAGCCATCTaGACAATACACTCTCCTGTG +
Preference number: 5 (lower is better)
Translates to: PLPWGMDGLSPSRSQNQARRAAI*TIHSPV
Trigger: CACAGGAGAGTGTATTGTCAAGATGGCTGCCCTGCG...GGCCTGGTTCTGTGACCTGGAAGGTGACAAGCCATCCATCCCCCATGGGAGAGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp GACAGAGTTGCTGTTCAGAGCCATGCGGCGCTGCCTGGCCAGACCCGGCTACTAACTTGGGATTCCTGTTaGCTGGACTCTTCCTCCTCC +
Preference number: 5 (lower is better)
Translates to: DRVAVQSHAALPGQTRLLTWDSC*LDSSSS
Trigger: GGAGGAGGAAGAGTCCAGCAAACAGGAATCCCAAGT...TAGTAGCCGGGTCTGGCCAGGCAGCGCCGCATGGCTCTGAACAGCAACTCTGTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120420.2
CDS TCA 90 bp ACCCCATTGCAGTCCACGGTGCTGTTTCTTTTGCCATTGAGGACATaGCCAGGAGCTGAGGTTCCAAAGCCGGGCTGCCCTTGGGTGCTG +
Preference number: 5 (lower is better)
Translates to: TPLQSTVLFLLPLRT*PGAEVPKPGCPWVL
Trigger: CAGCACCCAAGGGCAGCCCGGCTTTGGAACCTCAGCTCCTGGTCATGTCCTCAATGGCAAAAGAAACAGCACCGTGGACTGCAATGGGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS GCA 90 bp TGTGCGGTGGCTCTCGCTCTCTCCTGCTGTACTGTTCTCGTCATCTaGAAAATCTGCCTCGGAGCCTTGGTCCCGTCGCCGGAATGTGAA +
Preference number: 5 (lower is better)
Translates to: CAVALALSCCTVLVI*KICLGALVPSPECE
Trigger: TTCACATTCCGGCGACGGGACCAAGGCTCCGAGGCAGATTTTGCAGATGACGAGAACAGTACAGCAGGAGAGAGCGAGAGCCACCGCACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp GTTGCTGTTCAGAGCCATGCGGCGCTGCCTGGCCAGACCCGGCTACTAGGGTGTAACCGGAAGATGGTTTaGCCCTTATTCAGCACGATG +
Preference number: 5 (lower is better)
Translates to: VAVQSHAALPGQTRLLGCNRKMV*PLFSTM
Trigger: CATCGTGCTGAATAAGGGCAAAACCATCTTCCGGTT...ACACCCTAGTAGCCGGGTCTGGCCAGGCAGCGCCGCATGGCTCTGAACAGCAAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp ATTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTTAAAGCCGGGCTGCCCTaGGGTGCTGGGACGGCGCAG +
Preference number: 5 (lower is better)
Translates to: INTLTGEEGRPGQLSGSFKAGLP*GAGTAQ
Trigger: CTGCGCCGTCCCAGCACCCAAGGGCAGCCCGGCTTT...AAAGCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp TCCTCTCCCATGGGGGATGGATGGCTTGTCACCTTCCAGGTCACAGAACCAGGCTACTCCAGCAGAACCTaGATGGTCTTCCGCTCCTCC +
Preference number: 5 (lower is better)
Translates to: SSPMGDGWLVTFQVTEPGYSSRT*MVFRSS
Trigger: GGAGGAGCGGAAGACCATCAAGGTTCTGCTGGAGTA...GCCTGGTTCTGTGACCTGGAAGGTGACAAGCCATCCATCCCCCATGGGAGAGGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp CCTCTCCCATGGGGGATGGATGGCTTGTCACCTTCCAGGTCACAGAACCAGGCCATGAAACCCTGGTACTaGTTCAGAGGCCGTGGGATG +
Preference number: 5 (lower is better)
Translates to: PLPWGMDGLSPSRSQNQAMKPWY*FRGRGM
Trigger: CATCCCACGGCCTCTGAACAAGTACCAGGGTTTCAT...GGCCTGGTTCTGTGACCTGGAAGGTGACAAGCCATCCATCCCCCATGGGAGAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp CGGCTACTAGGGTGTGCCAGGCCTCTACCAGCCAGGGTTGCTCTAGCCGCCTCTACATCGAAGGCCTGCTaGGTCACAATGTCGAATATG +
Preference number: 5 (lower is better)
Translates to: RLLGCARPLPARVALAASTSKAC*VTMSNM
Trigger: CATATTCGACATTGTGACCAAGCAGGCCTTCGATGT...AGAGGCGGCTAGAGCAACCCTGGCTGGTAGAGGCCTGGCACACCCTAGTAGCCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS GCA 90 bp GCTCTCGCTCTCTCCTGCTGTACTGTTCTCGTCATCTGCAAAATCTaGCTCGGAGCCTTGGTCCCGTCGCCGGAATGTGAAAATGCTCCC +
Preference number: 5 (lower is better)
Translates to: ALALSCCTVLVICKI*LGALVPSPECENAP
Trigger: GGGAGCATTTTCACATTCCGGCGACGGGACCAAGGCTCCGAGGCAGATTTTGCAGATGACGAGAACAGTACAGCAGGAGAGAGCGAGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp CAGAAGACGCCTAGGATAGTCAGACCCTGGGCTGGGCCCAGATGCCACACTGTCCCTCGAGCTAGAATCTaGACCAGAGACTCAAAGGTG +
Preference number: 5 (lower is better)
Translates to: QKTPRIVRPWAGPRCHTVPRARI*TRDSKV
Trigger: CACCTTTGAGTCTCTGGTCAAGATTCTAGCTCGAGG...GACAGTGTGGCATCTGGGCCCAGCCCAGGGTCTGACTATCCTAGGCGTCTTCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp CCAGAGGAGCCTGGGAAATGGAGACCGCTCCCTTTGCTGCCACAGCTGGACACACCTCGAGCTAGAATCTaGACCAGAGACTCAAAGGTG +
Preference number: 5 (lower is better)
Translates to: PEEPGKWRPLPLLPQLDTPRARI*TRDSKV
Trigger: CACCTTTGAGTCTCTGGTCAAGATTCTAGCTCGAGG...TGTGTCCAGCTGTGGCAGCAAAGGGAGCGGTCTCCATTTCCCAGGCTCCTCTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp GAACTCTGCCGTGTGGTTCCTCCACCTGGAGGTTCCCCTGTCACCTCCAGAGCTAGTCGTTTCCTCCTCTaGCTCCTTCTCTCATGGTTG +
Preference number: 5 (lower is better)
Translates to: ELCRVVPPPGGSPVTSRASRFLL*LLLSWL
Trigger: CAACCATGAGAGAAGGAGCAAGAGGAGGAAACGACT...AGCTCTGGAGGTGACAGGGGAACCTCCAGGTGGAGGAACCACACGGCAGAGTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp ACTCGCCCACTCGCGTGTGTGAGTGAAGTGCTTAGGCCTTCCTGGCTCCTCAGCAGTCGTTTCCTCCTCTaGCTCCTTCTCTCATGGTTG +
Preference number: 5 (lower is better)
Translates to: TRPLACVSEVLRPSWLLSSRFLL*LLLSWL
Trigger: CAACCATGAGAGAAGGAGCAAGAGGAGGAAACGACT...GCTGAGGAGCCAGGAAGGCCTAAGCACTTCACTCACACACGCGAGTGGGCGAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp GCAGAGTTCTCCATTGACACCTGCTCAGGGTTAGGAAGAGGCCGTGTGAACTGCTCTTCTGAGTCCGACTaGGGGAGCCTGTCATCTCCG +
Preference number: 5 (lower is better)
Translates to: AEFSIDTCSGLGRGRVNCSSESD*GSLSSP
Trigger: CGGAGATGACAGGCTCCCCAAGTCGGACTCAGAAGA...GCAGTTCACACGGCCTCTTCCTAACCCTGAGCAGGTGTCAATGGAGAACTCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp CACAGAACTCTGCCGTGTGGTTCCTCCACCTGGAGGTTCCCCTGTCACCTCCAGAACTTCACCTTCTGCTaGATGGACATCCAGAGTGGG +
Preference number: 5 (lower is better)
Translates to: HRTLPCGSSTWRFPCHLQNFTFC*MDIQSG
Trigger: CCCACTCTGGATGTCCATCAAGCAGAAGGTGAAGTT...CTGGAGGTGACAGGGGAACCTCCAGGTGGAGGAACCACACGGCAGAGTTCTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp ACTCGCCCACTCGCGTGTGTGAGTGAAGTGCTTAGGCCTTCCTGGCTCCTCAGCAACTTCACCTTCTGCTaGATGGACATCCAGAGTGGG +
Preference number: 5 (lower is better)
Translates to: TRPLACVSEVLRPSWLLSNFTFC*MDIQSG
Trigger: CCCACTCTGGATGTCCATCAAGCAGAAGGTGAAGTT...GCTGAGGAGCCAGGAAGGCCTAAGCACTTCACTCACACACGCGAGTGGGCGAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp CTGCCTTCCTCGAGCCCTTGGGCCCCAACATTAATACTCTTACAGGAGAGGAAGAGGGCCAGCTGGAGGTaGTTCATCTCCCCATCCTCG +
Preference number: 5 (lower is better)
Translates to: LPSSSPWAPTLILLQERKRASWR*FISPSS
Trigger: CGAGGATGGGGAGATGAACAACCTCCAGCTGGCCCT...CTTCCTCTCCTGTAAGAGTATTAATGTTGGGGCCCAAGGGCTCGAGGAAGGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp TCCTCTCCCATGGGGGATGGATGGCTTGTCACCTTCCAGGTCACAGAACCAGGCAACTCTCCAGTCACGTaGAAGGACTCACACTCGCTC +
Preference number: 5 (lower is better)
Translates to: SSPMGDGWLVTFQVTEPGNSPVT*KDSHSL
Trigger: GAGCGAGTGTGAGTCCTTCAACGTGACTGGAGAGTT...GCCTGGTTCTGTGACCTGGAAGGTGACAAGCCATCCATCCCCCATGGGAGAGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp GTTGCTGTTCAGAGCCATGCGGCGCTGCCTGGCCAGACCCGGCTACTAGGGTGTAAGTTGACTTTCACCTaGGTCCAGTACAACTCTCCA +
Preference number: 5 (lower is better)
Translates to: VAVQSHAALPGQTRLLGCKLTFT*VQYNSP
Trigger: TGGAGAGTTGTACTGGACCAAGGTGAAAGTCAACTT...ACACCCTAGTAGCCGGGTCTGGCCAGGCAGCGCCGCATGGCTCTGAACAGCAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp CACAGAACTCTGCCGTGTGGTTCCTCCACCTGGAGGTTCCCCTGTCACCTCCAGCCCACGTTGTCAAAGTaGACTTTCACCTTGGTCCAG +
Preference number: 5 (lower is better)
Translates to: HRTLPCGSSTWRFPCHLQPTLSK*TFTLVQ
Trigger: CTGGACCAAGGTGAAAGTCAACTTTGACAACGTGGG...CTGGAGGTGACAGGGGAACCTCCAGGTGGAGGAACCACACGGCAGAGTTCTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp TCCTCTCCCATGGGGGATGGATGGCTTGTCACCTTCCAGGTCACAGAACCAGGCATGAAACCCTGGTACTaGTTCAGAGGCCGTGGGATG +
Preference number: 5 (lower is better)
Translates to: SSPMGDGWLVTFQVTEPGMKPWY*FRGRGM
Trigger: CATCCCACGGCCTCTGAACAAGTACCAGGGTTTCAT...GCCTGGTTCTGTGACCTGGAAGGTGACAAGCCATCCATCCCCCATGGGAGAGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp GACAGAGTTGCTGTTCAGAGCCATGCGGCGCTGCCTGGCCAGACCCGGCTACTAACATCGAAGGCCTGCTaGGTCACAATGTCGAATATG +
Preference number: 5 (lower is better)
Translates to: DRVAVQSHAALPGQTRLLTSKAC*VTMSNM
Trigger: CATATTCGACATTGTGACCAAGCAGGCCTTCGATGT...TAGTAGCCGGGTCTGGCCAGGCAGCGCCGCATGGCTCTGAACAGCAACTCTGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS CCA 90 bp GTCCATATTGATGAGGCTTATCTGGTTGGGCTTGGCGATGCGGAGTaGCTCAGACAGGGCATCGGCAAAGTCGGACAGGGCCAAATACTC +
Preference number: 5 (lower is better)
Translates to: VHIDEAYLVGLGDAE*LRQGIGKVGQGQIL
Trigger: GAGTATTTGGCCCTGTCCGACTTTGCCGATGCCCTGTCTGAGCCACTCCGCATCGCCAAGCCCAACCAGATAAGCCTCATCAATATGGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp GCTCTGAGAGCAGAGTTCTCCATTGACACCTGCTCAGGGTTAGGAAGAGGCCGTAGGCGGAGGGTCGTGTaGTGCCATGAACACACAGTT +
Preference number: 5 (lower is better)
Translates to: ALRAEFSIDTCSGLGRGRRRRVV*CHEHTV
Trigger: AACTGTGTGTTCATGGCACAACACGACCCTCCGCCT...ACGGCCTCTTCCTAACCCTGAGCAGGTGTCAATGGAGAACTCTGCTCTCAGAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp TCTGAAGACGGTTGGAGCCCCAGTGGGCATCTCCTTGACACACGGCCAGAGGCAGAACCATTGGTGCCATaGAGCTCAGTAAAGTTACGC +
Preference number: 5 (lower is better)
Translates to: SEDGWSPSGHLLDTRPEAEPLVP*SSVKLR
Trigger: GCGTAACTTTACTGAGCTCAATGGCACCAATGGTTC...TGCCTCTGGCCGTGTGTCAAGGAGATGCCCACTGGGGCTCCAACCGTCTTCAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp GCAGAGTTCTCCATTGACACCTGCTCAGGGTTAGGAAGAGGCCGTGTGAACTGCGCCTCCACGGAACCATaGGTGCCATTGAGCTCAGTA +
Preference number: 5 (lower is better)
Translates to: AEFSIDTCSGLGRGRVNCASTEP*VPLSSV
Trigger: TACTGAGCTCAATGGCACCAATGGTTCCGTGGAGGC...GCAGTTCACACGGCCTCTTCCTAACCCTGAGCAGGTGTCAATGGAGAACTCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp CCCTTGGGCCCCAACATTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGGCCTCCACGGAACCATaGGTGCCATTGAGCTCAGTA +
Preference number: 5 (lower is better)
Translates to: PLGPNINTLTGEEGRPGQASTEP*VPLSSV
Trigger: TACTGAGCTCAATGGCACCAATGGTTCCGTGGAGGC...CTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAATGTTGGGGCCCAAGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp AACATTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCCTCCGCTTCCCGCTCTaGCTGCCAGTCTGCCTGAGA +
Preference number: 5 (lower is better)
Translates to: NINTLTGEEGRPGQLSGSLRFPL*LPVCLR
Trigger: TCTCAGGCAGACTGGCAGCAAGAGCGGGAAGCGGAG...GCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAATGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp CTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTTCAATTTTCCCGAGGTCTGGGATTaGCTCCAGGAGGTCTGCGGT +
Preference number: 5 (lower is better)
Translates to: LLQERKGDQGSSLEAFNFPEVWD*LQEVCG
Trigger: ACCGCAGACCTCCTGGAGCAAATCCCAGACCTCGGG...AAAATTGAAAGCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp CAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTTCAATTTTTATAGCCAGTCCTCTGGGTCCTaGACGTCCTCCCCGAGGTCT +
Preference number: 5 (lower is better)
Translates to: QERKGDQGSSLEAFNFYSQSSGS*TSSPRS
Trigger: AGACCTCGGGGAGGACGTCAAGGACCCAGAGGACTG...GCTATAAAAATTGAAAGCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp GACAGAGTTGCTGTTCAGAGCCATGCGGCGCTGCCTGGCCAGACCCGGCTACTAAAGTTGACTTTCACCTaGGTCCAGTACAACTCTCCA +
Preference number: 5 (lower is better)
Translates to: DRVAVQSHAALPGQTRLLKLTFT*VQYNSP
Trigger: TGGAGAGTTGTACTGGACCAAGGTGAAAGTCAACTT...TAGTAGCCGGGTCTGGCCAGGCAGCGCCGCATGGCTCTGAACAGCAACTCTGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp AGAGGAGCCTGGGAAATGGAGACCGCTCCCTTTGCTGCCACAGCTGGACACAGTCCCACGTTGTCAAAGTaGACTTTCACCTTGGTCCAG +
Preference number: 5 (lower is better)
Translates to: RGAWEMETAPFAATAGHSPTLSK*TFTLVQ
Trigger: CTGGACCAAGGTGAAAGTCAACTTTGACAACGTGGG...ACTGTGTCCAGCTGTGGCAGCAAAGGGAGCGGTCTCCATTTCCCAGGCTCCTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp CCTCTCCCATGGGGGATGGATGGCTTGTCACCTTCCAGGTCACAGAACCAGGCCACATCGAAGGCCTGCTaGGTCACAATGTCGAATATG +
Preference number: 5 (lower is better)
Translates to: PLPWGMDGLSPSRSQNQATSKAC*VTMSNM
Trigger: CATATTCGACATTGTGACCAAGCAGGCCTTCGATGT...GGCCTGGTTCTGTGACCTGGAAGGTGACAAGCCATCCATCCCCCATGGGAGAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp GCTCTGAGAGCAGAGTTCTCCATTGACACCTGCTCAGGGTTAGGAAGAGGCCGTATGAGGCTTATCTGGTaGGGCTTGGCGATGCGGAGT +
Preference number: 5 (lower is better)
Translates to: ALRAEFSIDTCSGLGRGRMRLIW*GLAMRS
Trigger: ACTCCGCATCGCCAAGCCCAACCAGATAAGCCTCAT...ACGGCCTCTTCCTAACCCTGAGCAGGTGTCAATGGAGAACTCTGCTCTCAGAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp CCTCTCCCATGGGGGATGGATGGCTTGTCACCTTCCAGGTCACAGAACCAGGCCATGGGCAGGTCCATATaGATGAGGCTTATCTGGTTG +
Preference number: 5 (lower is better)
Translates to: PLPWGMDGLSPSRSQNQAMGRSI*MRLIWL
Trigger: CAACCAGATAAGCCTCATCAATATGGACCTGCCCAT...GGCCTGGTTCTGTGACCTGGAAGGTGACAAGCCATCCATCCCCCATGGGAGAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp TCTGAAGACGGTTGGAGCCCCAGTGGGCATCTCCTTGACACACGGCCAGAGGCAATGGGCAGGTCCATATaGATGAGGCTTATCTGGTTG +
Preference number: 5 (lower is better)
Translates to: SEDGWSPSGHLLDTRPEAMGRSI*MRLIWL
Trigger: CAACCAGATAAGCCTCATCAATATGGACCTGCCCAT...TGCCTCTGGCCGTGTGTCAAGGAGATGCCCACTGGGGCTCCAACCGTCTTCAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp AACATTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTCCCAGGTGGTCCGCTaGACAAAGCGAAGGCCCCTT +
Preference number: 5 (lower is better)
Translates to: NINTLTGEEGRPGQLSGSSQVVR*TKRRPL
Trigger: AAGGGGCCTTCGCTTTGTCAAGCGGACCACCTGGGA...GCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAATGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp CCCTTGGGCCCCAACATTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGGCCACCAGACACAACTaGGGATTCCTGCTGTTTGCT +
Preference number: 5 (lower is better)
Translates to: PLGPNINTLTGEEGRPGQATRHN*GFLLFA
Trigger: AGCAAACAGCAGGAATCCCAAGTTGTGTCTGGTGGC...CTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAATGTTGGGGCCCAAGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS-3UTR CAA 90 bp GCAGAGTTCTCCATTGACACCTGCTCAGGGTTAGGAAGAGGCCGTGTGAACTGCGCCACGAAGAGCAGGTaGATCTTGGCCAAGATGTTG +
Preference number: 5 (lower is better)
Translates to: AEFSIDTCSGLGRGRVNCATKSR*ILAKML
Trigger: CAACATCTTGGCCAAGATCAACCTGCTCTTCGTGGC...GCAGTTCACACGGCCTCTTCCTAACCCTGAGCAGGTGTCAATGGAGAACTCTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp TTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTTCAACGTGCGAATCCCCTaGGCTCCTCGGATCAGCCTG +
Preference number: 5 (lower is better)
Translates to: LILLQERKGDQGSSLEAFNVRIP*APRISL
Trigger: CAGGCTGATCCGAGGAGCCAAGGGGATTCGCACGTT...GAAAGCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp TCTAGAAAAGGAGGCCATGCTAAGCCAAGGACTCGGGACTCGATTGCCCCTCCCAACCGGAAGATGGTTTaGCCCTTATTCAGCACGATG +
Preference number: 5 (lower is better)
Translates to: SRKGGHAKPRTRDSIAPPNRKMV*PLFSTM
Trigger: CATCGTGCTGAATAAGGGCAAAACCATCTTCCGGTT...GGGAGGGGCAATCGAGTCCCGAGTCCTTGGCTTAGCATGGCCTCCTTTTCTAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS-3UTR CAA 90 bp AACATTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCGCAAAGCCTAAGGTGTaGGCCACGAGGCTGACCAGT +
Preference number: 5 (lower is better)
Translates to: NINTLTGEEGRPGQLSGSAKPKV*ATRLTS
Trigger: ACTGGTCAGCCTCGTGGCCAACACCTTAGGCTTTGC...GCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAATGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp CACAGAACTCTGCCGTGTGGTTCCTCCACCTGGAGGTTCCCCTGTCACCTCCAGAAGAGCAGGTTGATCTaGGCCAAGATGTTGACTTTT +
Preference number: 5 (lower is better)
Translates to: HRTLPCGSSTWRFPCHLQKSRLI*AKMLTF
Trigger: AAAAGTCAACATCTTGGCCAAGATCAACCTGCTCTT...CTGGAGGTGACAGGGGAACCTCCAGGTGGAGGAACCACACGGCAGAGTTCTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp CAGAAGACGCCTAGGATAGTCAGACCCTGGGCTGGGCCCAGATGCCACACTGTCAAGAGCAGGTTGATCTaGGCCAAGATGTTGACTTTT +
Preference number: 5 (lower is better)
Translates to: QKTPRIVRPWAGPRCHTVKSRLI*AKMLTF
Trigger: AAAAGTCAACATCTTGGCCAAGATCAACCTGCTCTT...GACAGTGTGGCATCTGGGCCCAGCCCAGGGTCTGACTATCCTAGGCGTCTTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp GCAGAGTTCTCCATTGACACCTGCTCAGGGTTAGGAAGAGGCCGTGTGAACTGCGAACCATTGGTGCCATaGAGCTCAGTAAAGTTACGC +
Preference number: 5 (lower is better)
Translates to: AEFSIDTCSGLGRGRVNCEPLVP*SSVKLR
Trigger: GCGTAACTTTACTGAGCTCAATGGCACCAATGGTTC...GCAGTTCACACGGCCTCTTCCTAACCCTGAGCAGGTGTCAATGGAGAACTCTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp AACATTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCGATGGTGGCTTGGTTTaGCTCCTCGTAAGCCATGGC +
Preference number: 5 (lower is better)
Translates to: NINTLTGEEGRPGQLSGSDGGLV*LLVSHG
Trigger: GCCATGGCTTACGAGGAGCAAAACCAAGCCACCATC...GCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAATGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp CAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTTCAATTTTTATAGCATGAGGCTTATCTGGTaGGGCTTGGCGATGCGGAGT +
Preference number: 5 (lower is better)
Translates to: QERKGDQGSSLEAFNFYSMRLIW*GLAMRS
Trigger: ACTCCGCATCGCCAAGCCCAACCAGATAAGCCTCAT...GCTATAAAAATTGAAAGCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp ATTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTTAGGCGGAGGGTCGTGTaGTGCCATGAACACACAGTT +
Preference number: 5 (lower is better)
Translates to: INTLTGEEGRPGQLSGSFRRRVV*CHEHTV
Trigger: AACTGTGTGTTCATGGCACAACACGACCCTCCGCCT...AAAGCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp AACATTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCCTCCTTCTCTCATGGTaGGTTACTGGGGCCAAAGGA +
Preference number: 5 (lower is better)
Translates to: NINTLTGEEGRPGQLSGSLLLSW*VTGAKG
Trigger: TCCTTTGGCCCCAGTAACCAACCATGAGAGAAGGAG...GCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAATGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp CTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTTCAATTTTGCCACCAGACACAACTaGGGATTCCTGCTGTTTGCT +
Preference number: 5 (lower is better)
Translates to: LLQERKGDQGSSLEAFNFATRHN*GFLLFA
Trigger: AGCAAACAGCAGGAATCCCAAGTTGTGTCTGGTGGC...AAAATTGAAAGCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS-3UTR CAA 90 bp AACATTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCCCTCGAGCTAGAATCTaGACCAGAGACTCAAAGGTG +
Preference number: 5 (lower is better)
Translates to: NINTLTGEEGRPGQLSGSPRARI*TRDSKV
Trigger: CACCTTTGAGTCTCTGGTCAAGATTCTAGCTCGAGG...GCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAATGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp CAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTTCAATTTTTATAGCCCCACGTTGTCAAAGTaGACTTTCACCTTGGTCCAG +
Preference number: 5 (lower is better)
Translates to: QERKGDQGSSLEAFNFYSPTLSK*TFTLVQ
Trigger: CTGGACCAAGGTGAAAGTCAACTTTGACAACGTGGG...GCTATAAAAATTGAAAGCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp ATTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTTTACCCAGCCCCCACGTaGTCAAAGTTGACTTTCACC +
Preference number: 5 (lower is better)
Translates to: INTLTGEEGRPGQLSGSFYPAPT*SKLTFT
Trigger: GGTGAAAGTCAACTTTGACAACGTGGGGGCTGGGTA...AAAGCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp GCAGAGTTCTCCATTGACACCTGCTCAGGGTTAGGAAGAGGCCGTGTGAACTGCCGAAGAGCCGACAAATaGCCTAGCTTTATATTCTCT +
Preference number: 5 (lower is better)
Translates to: AEFSIDTCSGLGRGRVNCRRADK*PSFIFS
Trigger: AGAGAATATAAAGCTAGGCAATTTGTCGGCTCTTCG...GCAGTTCACACGGCCTCTTCCTAACCCTGAGCAGGTGTCAATGGAGAACTCTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117911.8
CDS-3UTR CAA 90 bp CAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTTCAATTTTTATAGCGAACCATTGGTGCCATaGAGCTCAGTAAAGTTACGC +
Preference number: 5 (lower is better)
Translates to: QERKGDQGSSLEAFNFYSEPLVP*SSVKLR
Trigger: GCGTAACTTTACTGAGCTCAATGGCACCAATGGTTC...GCTATAAAAATTGAAAGCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS-3UTR CAA 90 bp TTAATACTCTTACAGGAGAGGAAGGGAGACCAGGGCAGCTCTCTGGAAGCTTTCAAGAGCAGGTTGATCTaGGCCAAGATGTTGACTTTT +
Preference number: 5 (lower is better)
Translates to: LILLQERKGDQGSSLEAFKSRLI*AKMLTF
Trigger: AAAAGTCAACATCTTGGCCAAGATCAACCTGCTCTT...GAAAGCTTCCAGAGAGCTGCCCTGGTCTCCCTTCCTCTCCTGTAAGAGTATTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS GCA 90 bp ACCATGTTTAAACAGATGAGGAACATGATGGTAACATCGAAGGCCTaGTTGGTCACAATGTCGAATATGAAACCCTGGTACTTGTTCAGA +
Preference number: 5 (lower is better)
Translates to: TMFKQMRNMMVTSKA*LVTMSNMKPWYLFR
Trigger: TCTGAACAAGTACCAGGGTTTCATATTCGACATTGTGACCAAGCAGGCCTTCGATGTTACCATCATGTTCCTCATCTGTTTAAACATGGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS CCA 72 bp CTGGGGGTGGTGGGGACCTGGGAGCGGCGATACAGCTaGGCAGCTGGCTGTGGGTGGCAAGAGCCGCGGGCT +
Preference number: 6 (lower is better)
Translates to: LGVVGTWERRYS*AAGCGWQEPRA
Trigger: AGCCCGCGGCTCTTGCCACCCACAGCCAGCTGCCCAGCTGTATCGCCGCTCCCAGGTCCCCACCACCCCCAG
72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS CAA 90 bp GGTCGCCGCCGCAGGAGCCCGCAGCAGAAGTCCCAGGTGGTCCGCTaGACAAAGCGAAGGCCCCTTTGGATGCGAGCCAGGGCCAGCTGG +
Preference number: 6 (lower is better)
Translates to: GRRRRSPQQKSQVVR*TKRRPLWMRARASW
Trigger: CCAGCTGGCCCTGGCTCGCATCCAAAGGGGCCTTCGCTTTGTCAAGCGGACCACCTGGGACTTCTGCTGCGGGCTCCTGCGGCGGCGACC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS TCA 72 bp CTGCGGTGTCAGCATCTGGGGCCCACCCGGCTCCTCTaGCGGCGTGGTCGTGTCTGGGGGTCTGTCCAGCAC +
Preference number: 6 (lower is better)
Translates to: LRCQHLGPTRLL*RRGRVWGSVQH
Trigger: GTGCTGGACAGACCCCCAGACACGACCACGCCGTCAGAGGAGCCGGGTGGGCCCCAGATGCTGACACCGCAG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS CAA 72 bp GGCTCGGTATCCCCAGGGGTGCCCTGGCCCGGCCGCTaGTCTTCCTCGAACCGTGTTTCCTTGCGGGCTGGG +
Preference number: 6 (lower is better)
Translates to: GSVSPGVPWPGR*SSSNRVSLRAG
Trigger: CCCAGCCCGCAAGGAAACACGGTTCGAGGAAGACAAGCGGCCGGGCCAGGGCACCCCTGGGGATACCGAGCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS GCA 72 bp GCGCTGGTGAGGACACTGACGGCGCTGAGTGCCCGTTaGCGTGCCCCGGGCTCCTCAAAGCCATCTGCACAT +
Preference number: 6 (lower is better)
Translates to: ALVRTLTALSAR*RAPGSSKPSAH
Trigger: ATGTGCAGATGGCTTTGAGGAGCCCGGGGCACGGCAACGGGCACTCAGCGCCGTCAGTGTCCTCACCAGCGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS GCA 72 bp CGATGGGAACACACACAGGCTCGGTATCCCCAGGGGTaGCCTGGCCCGGCCGCTTGTCTTCCTCGAACCGTG +
Preference number: 6 (lower is better)
Translates to: RWEHTQARYPQG*PGPAACLPRTV
Trigger: CACGGTTCGAGGAAGACAAGCGGCCGGGCCAGGGCACCCCTGGGGATACCGAGCCTGTGTGTGTTCCCATCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS GCA 72 bp GGCCCGGGGCTCCGCTTCCCGCTCTTGCTGCCAGTCTaGCTGAGACGTACTGGCCTCGGCTTCAGAGGATGT +
Preference number: 6 (lower is better)
Translates to: GPGLRFPLLLPV*LRRTGLGFRGC
Trigger: ACATCCTCTGAAGCCGAGGCCAGTACGTCTCAGGCAGACTGGCAGCAAGAGCGGGAAGCGGAGCCCCGGGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS CCA 72 bp CGGCGCAGGGGCCAGGGCACCAGCAGCGATGTGCGGTaGCTCTCGCTCTCTCCTGCTGTACTGTTCTCGTCA +
Preference number: 6 (lower is better)
Translates to: RRRGQGTSSDVR*LSLSPAVLFSS
Trigger: TGACGAGAACAGTACAGCAGGAGAGAGCGAGAGCCACCGCACATCGCTGCTGGTGCCCTGGCCCCTGCGCCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS CCA 72 bp AAGCCATCTGCACATGGAGCCTGCGGTGTCAGCATCTaGGGCCCACCCGGCTCCTCTGACGGCGTGGTCGTG +
Preference number: 6 (lower is better)
Translates to: KPSAHGACGVSI*GPPGSSDGVVV
Trigger: CACGACCACGCCGTCAGAGGAGCCGGGTGGGCCCCAGATGCTGACACCGCAGGCTCCATGTGCAGATGGCTT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS CCA 72 bp ACCGAGCGCTGCAGGAGGTGCCTCCGGAAGGCCCGCTaGATGACCGTGGCCGACACCTCCTCATGTTTTCGC +
Preference number: 6 (lower is better)
Translates to: TERCRRCLRKAR*MTVADTSSCFR
Trigger: GCGAAAACATGAGGAGGTGTCGGCCACGGTCATCCAGCGGGCCTTCCGGAGGCACCTCCTGCAGCGCTCGGT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS CAA 72 bp AGCGCTGGTGAGGACACTGACGGCGCTGAGTGCCCGTaGCCGTGCCCCGGGCTCCTCAAAGCCATCTGCACA +
Preference number: 6 (lower is better)
Translates to: SAGEDTDGAECP*PCPGLLKAICT
Trigger: TGTGCAGATGGCTTTGAGGAGCCCGGGGCACGGCAACGGGCACTCAGCGCCGTCAGTGTCCTCACCAGCGCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS CAA 90 bp CTCTTCCAGAGCGCTGGTGAGGACACTGACGGCGCTGAGTGCCCGTaGCCGTGCCCCGGGCTCCTCAAAGCCATCTGCACATGGAGCCTG +
Preference number: 6 (lower is better)
Translates to: LFQSAGEDTDGAECP*PCPGLLKAICTWSL
Trigger: CAGGCTCCATGTGCAGATGGCTTTGAGGAGCCCGGGGCACGGCAACGGGCACTCAGCGCCGTCAGTGTCCTCACCAGCGCTCTGGAAGAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS TCA 72 bp GCAGGAGCCCGCAGCAGAAGTCCCAGGTGGTCCGCTTaGCAAAGCGAAGGCCCCTTTGGATGCGAGCCAGGG +
Preference number: 6 (lower is better)
Translates to: AGARSRSPRWSA*QSEGPFGCEPG
Trigger: CCCTGGCTCGCATCCAAAGGGGCCTTCGCTTTGTCAAGCGGACCACCTGGGACTTCTGCTGCGGGCTCCTGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS TCA 72 bp CGGGGCTCCGCTTCCCGCTCTTGCTGCCAGTCTGCCTaGGACGTACTGGCCTCGGCTTCAGAGGATGTGGTC +
Preference number: 6 (lower is better)
Translates to: RGSASRSCCQSA*DVLASASEDVV
Trigger: GACCACATCCTCTGAAGCCGAGGCCAGTACGTCTCAGGCAGACTGGCAGCAAGAGCGGGAAGCGGAGCCCCG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS GCA 72 bp TGGCGGAAGAGGAAGGAAGCATGCTTCACCGAGCGCTaGAGGAGGTGCCTCCGGAAGGCCCGCTGGATGACC +
Preference number: 6 (lower is better)
Translates to: WRKRKEACFTER*RRCLRKARWMT
Trigger: GGTCATCCAGCGGGCCTTCCGGAGGCACCTCCTGCAGCGCTCGGTGAAGCATGCTTCCTTCCTCTTCCGCCA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS GCA 72 bp CTGCTGCCCGCTTGCTGGCGGAAGAGGAAGGAAGCATaGTTCACCGAGCGCTGCAGGAGGTGCCTCCGGAAG +
Preference number: 6 (lower is better)
Translates to: LLPACWRKRKEA*FTERCRRCLRK
Trigger: CTTCCGGAGGCACCTCCTGCAGCGCTCGGTGAAGCATGCTTCCTTCCTCTTCCGCCAGCAAGCGGGCAGCAG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS CAA 72 bp CGCAGGAGCCCGCAGCAGAAGTCCCAGGTGGTCCGCTaGACAAAGCGAAGGCCCCTTTGGATGCGAGCCAGG +
Preference number: 6 (lower is better)
Translates to: RRSPQQKSQVVR*TKRRPLWMRAR
Trigger: CCTGGCTCGCATCCAAAGGGGCCTTCGCTTTGTCAAGCGGACCACCTGGGACTTCTGCTGCGGGCTCCTGCG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS GCA 72 bp GTCTTGCGCAGTCTCCACCAGACCTTCCCTGGGGCCTaGGTCGTGTCCACCATGCAGCAAGGACAACGTCGG +
Preference number: 6 (lower is better)
Translates to: VLRSLHQTFPGA*VVSTMQQGQRR
Trigger: CCGACGTTGTCCTTGCTGCATGGTGGACACGACGCAGGCCCCAGGGAAGGTCTGGTGGAGACTGCGCAAGAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS CCA 72 bp CCTCCTCTGGCAGGCCCTCACGGCTCTCCTGTGAGGTaGCCGAACCACGGGCTTGTTTTTCAGCCATGCGCT +
Preference number: 6 (lower is better)
Translates to: PPLAGPHGSPVR*PNHGLVFQPCA
Trigger: AGCGCATGGCTGAAAAACAAGCCCGTGGTTCGGCCACCTCACAGGAGAGCCGTGAGGGCCTGCCAGAGGAGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS TCA 72 bp AGCCTCCTCCTCTGGCAGGCCCTCACGGCTCTCCTGTaGGGTGGCCGAACCACGGGCTTGTTTTTCAGCCAT +
Preference number: 6 (lower is better)
Translates to: SLLLWQALTALL*GGRTTGLFFSH
Trigger: ATGGCTGAAAAACAAGCCCGTGGTTCGGCCACCTCACAGGAGAGCCGTGAGGGCCTGCCAGAGGAGGAGGCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS TCA 72 bp ACGCACGCACTGGGAGGTTATCACTGGTGGCCCTCGTaGCGCTGTCATAGGACGGTGGGAAGGACGTGGAGG +
Preference number: 6 (lower is better)
Translates to: THALGGYHWWPS*RCHRTVGRTWR
Trigger: CCTCCACGTCCTTCCCACCGTCCTATGACAGCGTCACGAGGGCCACCAGTGATAACCTCCCAGTGCGTGCGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS GCA 72 bp GTCCTCCCCGAGGTCTGGGATTTGCTCCAGGAGGTCTaGGGTGTTGGTCATGTCAGCGGTGCTACCCTCGGA +
Preference number: 6 (lower is better)
Translates to: VLPEVWDLLQEV*GVGHVSGATLG
Trigger: TCCGAGGGTAGCACCGCTGACATGACCAACACCGCAGACCTCCTGGAGCAAATCCCAGACCTCGGGGAGGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS CAA 90 bp GAAGCAGTCCTCTGGGTCCTTGACGTCCTCCCCGAGGTCTGGGATTaGCTCCAGGAGGTCTGCGGTGTTGGTCATGTCAGCGGTGCTACC +
Preference number: 6 (lower is better)
Translates to: EAVLWVLDVLPEVWD*LQEVCGVGHVSGAT
Trigger: GGTAGCACCGCTGACATGACCAACACCGCAGACCTCCTGGAGCAAATCCCAGACCTCGGGGAGGACGTCAAGGACCCAGAGGACTGCTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS TCA 72 bp CCATCATGTGCCAGCGGGGCAGCAGGCCAGAGTCGCTaGTTCGGTGCCTCAGCTCTGAGTAGTTCTTGCCGA +
Preference number: 6 (lower is better)
Translates to: PSCASGAAGQSR*FGASALSSSCR
Trigger: TCGGCAAGAACTACTCAGAGCTGAGGCACCGAATCAGCGACTCTGGCCTGCTGCCCCGCTGGCACATGATGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS GCA 72 bp GGGGGCTCGTGGCCACCAGACACAACTTGGGATTCCTaGTGTTTGCTGGACTCTTCCTCCTCCGTGCCAAGG +
Preference number: 6 (lower is better)
Translates to: GGSWPPDTTWDS*CLLDSSSSVPR
Trigger: CCTTGGCACGGAGGAGGAAGAGTCCAGCAAACAGCAGGAATCCCAAGTTGTGTCTGGTGGCCACGAGCCCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
CDS GCA 72 bp GCTCCAGGAGGTCTGCGGTGTTGGTCATGTCAGCGGTaGTACCCTCGGAGTAACTGTCCTCGGGAGTCTCAC +
Preference number: 6 (lower is better)
Translates to: APGGLRCWSCQR*YPRSNCPRESH
Trigger: GTGAGACTCCCGAGGACAGTTACTCCGAGGGTAGCACCGCTGACATGACCAACACCGCAGACCTCCTGGAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS GCA 72 bp TCTGGGTCCTTGACGTCCTCCCCGAGGTCTGGGATTTaGTCCAGGAGGTCTGCGGTGTTGGTCATGTCAGCG +
Preference number: 6 (lower is better)
Translates to: SGSLTSSPRSGI*SRRSAVLVMSA
Trigger: CGCTGACATGACCAACACCGCAGACCTCCTGGAGCAAATCCCAGACCTCGGGGAGGACGTCAAGGACCCAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS CCA 72 bp GATGAGGCTTATCTGGTTGGGCTTGGCGATGCGGAGTaGCTCAGACAGGGCATCGGCAAAGTCGGACAGGGC +
Preference number: 6 (lower is better)
Translates to: DEAYLVGLGDAE*LRQGIGKVGQG
Trigger: GCCCTGTCCGACTTTGCCGATGCCCTGTCTGAGCCACTCCGCATCGCCAAGCCCAACCAGATAAGCCTCATC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS CAA 72 bp GTCCCAGGTGGTCCGCTTGACAAAGCGAAGGCCCCTTaGGATGCGAGCCAGGGCCAGCTGGAGGTTGTTCAT +
Preference number: 6 (lower is better)
Translates to: VPGGPLDKAKAP*DASQGQLEVVH
Trigger: ATGAACAACCTCCAGCTGGCCCTGGCTCGCATCCAAAGGGGCCTTCGCTTTGTCAAGCGGACCACCTGGGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS CAA 72 bp CTCTGGGTCCTTGACGTCCTCCCCGAGGTCTGGGATTaGCTCCAGGAGGTCTGCGGTGTTGGTCATGTCAGC +
Preference number: 6 (lower is better)
Translates to: LWVLDVLPEVWD*LQEVCGVGHVS
Trigger: GCTGACATGACCAACACCGCAGACCTCCTGGAGCAAATCCCAGACCTCGGGGAGGACGTCAAGGACCCAGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS GCA 72 bp GTCGAAGCTGGTGTAACCGTGGTCAGGGTTCTCACCTaGCTTCAGGCACCGGTAGCCTTCAGGACATGTCCC +
Preference number: 6 (lower is better)
Translates to: VEAGVTVVRVLT*LQAPVAFRTCP
Trigger: GGGACATGTCCTGAAGGCTACCGGTGCCTGAAGGCAGGTGAGAACCCTGACCACGGTTACACCAGCTTCGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS GCA 72 bp GCTCTCGCTCTCTCCTGCTGTACTGTTCTCGTCATCTaGAAAATCTGCCTCGGAGCCTTGGTCCCGTCGCCG +
Preference number: 6 (lower is better)
Translates to: ALALSCCTVLVI*KICLGALVPSP
Trigger: CGGCGACGGGACCAAGGCTCCGAGGCAGATTTTGCAGATGACGAGAACAGTACAGCAGGAGAGAGCGAGAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS CCA 72 bp CTTCCTGGTCATCAGTGTCTGACTCAGCCACTGCGATaGGAACACACACAGGCTCGGTATCCCCAGGGGTGC +
Preference number: 6 (lower is better)
Translates to: LPGHQCLTQPLR*EHTQARYPQGC
Trigger: GCACCCCTGGGGATACCGAGCCTGTGTGTGTTCCCATCGCAGTGGCTGAGTCAGACACTGATGACCAGGAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS CCA 72 bp CTTCCCGCTCTTGCTGCCAGTCTGCCTGAGACGTACTaGCCTCGGCTTCAGAGGATGTGGTCTCTGACACCT +
Preference number: 6 (lower is better)
Translates to: LPALAASLPETY*PRLQRMWSLTP
Trigger: AGGTGTCAGAGACCACATCCTCTGAAGCCGAGGCCAGTACGTCTCAGGCAGACTGGCAGCAAGAGCGGGAAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS CCA 72 bp ACAACGTCGGACGCAGCCTTCAGTGAAGCAGTCCTCTaGGTCCTTGACGTCCTCCCCGAGGTCTGGGATTTG +
Preference number: 6 (lower is better)
Translates to: TTSDAAFSEAVL*VLDVLPEVWDL
Trigger: CAAATCCCAGACCTCGGGGAGGACGTCAAGGACCCAGAGGACTGCTTCACTGAAGGCTGCGTCCGACGTTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS CAA 90 bp TCCTGCTGTACTGTTCTCGTCATCTGCAAAATCTGCCTCGGAGCCTaGGTCCCGTCGCCGGAATGTGAAAATGCTCCCTCGGCTGGAGCG +
Preference number: 6 (lower is better)
Translates to: SCCTVLVICKICLGA*VPSPECENAPSAGA
Trigger: CGCTCCAGCCGAGGGAGCATTTTCACATTCCGGCGACGGGACCAAGGCTCCGAGGCAGATTTTGCAGATGACGAGAACAGTACAGCAGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS TCA 72 bp GAGGCTGAGCTGATTCAATGCTCTGGGACCGTCTTCTaGGTCCGACTTGGGGAGCCTGTCATCTCCGCCATC +
Preference number: 6 (lower is better)
Translates to: EAELIQCSGTVF*VRLGEPVISAI
Trigger: GATGGCGGAGATGACAGGCTCCCCAAGTCGGACTCAGAAGACGGTCCCAGAGCATTGAATCAGCTCAGCCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS TCA 72 bp GCTGTTTCTTTTGCCATTGAGGACATGACCAGGAGCTaGGGTTCCAAAGCCGGGCTGCCCTTGGGTGCTGGG +
Preference number: 6 (lower is better)
Translates to: AVSFAIEDMTRS*GSKAGLPLGAG
Trigger: CCCAGCACCCAAGGGCAGCCCGGCTTTGGAACCTCAGCTCCTGGTCATGTCCTCAATGGCAAAAGAAACAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS GCA 72 bp AGACTCTCGGTCCCTATCTGGAGATGGAGGGAAGTCTaGAAGATCTTCGCTGCGGCTGTAGTCCGACGCACG +
Preference number: 6 (lower is better)
Translates to: RLSVPIWRWREV*KIFAAAVVRRT
Trigger: CGTGCGTCGGACTACAGCCGCAGCGAAGATCTTGCAGACTTCCCTCCATCTCCAGATAGGGACCGAGAGTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS CCA 72 bp TGTACCAAAATCTTCACAGCCGCTCTGCGCACCGGGTaGAAGGGGCTGAGGACGTACAAGGCATTGGTGGCA +
Preference number: 6 (lower is better)
Translates to: CTKIFTAALRTG*KGLRTYKALVA
Trigger: TGCCACCAATGCCTTGTACGTCCTCAGCCCCTTCCACCCGGTGCGCAGAGCGGCTGTGAAGATTTTGGTACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS CCA 72 bp TGGGCAAAGCGATTCCAGCATGGTGGACACTTACGGTaGGACTCCTCCAACTCTTCCAGAGCGCTGGTGAGG +
Preference number: 6 (lower is better)
Translates to: WAKRFQHGGHLR*DSSNSSRALVR
Trigger: CCTCACCAGCGCTCTGGAAGAGTTGGAGGAGTCCCACCGTAAGTGTCCACCATGCTGGAATCGCTTTGCCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS CCA 72 bp CGAGGTCTGGGATTTGCTCCAGGAGGTCTGCGGTGTTaGTCATGTCAGCGGTGCTACCCTCGGAGTAACTGT +
Preference number: 6 (lower is better)
Translates to: RGLGFAPGGLRC*SCQRCYPRSNC
Trigger: ACAGTTACTCCGAGGGTAGCACCGCTGACATGACCAACACCGCAGACCTCCTGGAGCAAATCCCAGACCTCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS CAA 72 bp CTCAGGGGTCGAAGTGCACGCAGTGTCCTCAGGGACTaGATGGGACCCATCTCGGCAAAGCCTAAGGTGTTG +
Preference number: 6 (lower is better)
Translates to: LRGRSARSVLRD*MGPISAKPKVL
Trigger: CAACACCTTAGGCTTTGCCGAGATGGGTCCCATCAAGTCCCTGAGGACACTGCGTGCACTTCGACCCCTGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS CAA 72 bp GGCAGGTCCATATTGATGAGGCTTATCTGGTTGGGCTaGGCGATGCGGAGTGGCTCAGACAGGGCATCGGCA +
Preference number: 6 (lower is better)
Translates to: GRSILMRLIWLG*AMRSGSDRASA
Trigger: TGCCGATGCCCTGTCTGAGCCACTCCGCATCGCCAAGCCCAACCAGATAAGCCTCATCAATATGGACCTGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS CAA 90 bp GTCCTCAGGGACTTGATGGGACCCATCTCGGCAAAGCCTAAGGTGTaGGCCACGAGGCTGACCAGTGAGACGTCCACAATTAGGAAGTCC +
Preference number: 6 (lower is better)
Translates to: VLRDLMGPISAKPKV*ATRLTSETSTIRKS
Trigger: GGACTTCCTAATTGTGGACGTCTCACTGGTCAGCCTCGTGGCCAACACCTTAGGCTTTGCCGAGATGGGTCCCATCAAGTCCCTGAGGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS TCA 72 bp CAGTCCACGGTGCTGTTTCTTTTGCCATTGAGGACATaGCCAGGAGCTGAGGTTCCAAAGCCGGGCTGCCCT +
Preference number: 6 (lower is better)
Translates to: QSTVLFLLPLRT*PGAEVPKPGCP
Trigger: AGGGCAGCCCGGCTTTGGAACCTCAGCTCCTGGTCATGTCCTCAATGGCAAAAGAAACAGCACCGTGGACTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS TCA 72 bp CCATCTCGGCAAAGCCTAAGGTGTTGGCCACGAGGCTaGCCAGTGAGACGTCCACAATTAGGAAGTCCAGCC +
Preference number: 6 (lower is better)
Translates to: PSRQSLRCWPRG*PVRRPQLGSPA
Trigger: GGCTGGACTTCCTAATTGTGGACGTCTCACTGGTCAGCCTCGTGGCCAACACCTTAGGCTTTGCCGAGATGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS GCA 72 bp CACCAGCAGCGATGTGCGGTGGCTCTCGCTCTCTCCTaGTGTACTGTTCTCGTCATCTGCAAAATCTGCCTC +
Preference number: 6 (lower is better)
Translates to: HQQRCAVALALS*CTVLVICKICL
Trigger: GAGGCAGATTTTGCAGATGACGAGAACAGTACAGCAGGAGAGAGCGAGAGCCACCGCACATCGCTGCTGGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS CCA 72 bp CCTGGAAACGCTTCTCCTTCTCTTCCGTCTCGGCGATaGTGGCTTGGTTTTGCTCCTCGTAAGCCATGGCCA +
Preference number: 6 (lower is better)
Translates to: PGNASPSLPSRR*WLGFAPRKPWP
Trigger: TGGCCATGGCTTACGAGGAGCAAAACCAAGCCACCATCGCCGAGACGGAAGAGAAGGAGAAGCGTTTCCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS CCA 72 bp CTGTTCTCGTCATCTGCAAAATCTGCCTCGGAGCCTTaGTCCCGTCGCCGGAATGTGAAAATGCTCCCTCGG +
Preference number: 6 (lower is better)
Translates to: LFSSSAKSASEP*SRRRNVKMLPR
Trigger: CCGAGGGAGCATTTTCACATTCCGGCGACGGGACCAAGGCTCCGAGGCAGATTTTGCAGATGACGAGAACAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS CAA 72 bp ACCATGGGCAGGTCCATATTGATGAGGCTTATCTGGTaGGGCTTGGCGATGCGGAGTGGCTCAGACAGGGCA +
Preference number: 6 (lower is better)
Translates to: TMGRSILMRLIW*GLAMRSGSDRA
Trigger: TGCCCTGTCTGAGCCACTCCGCATCGCCAAGCCCAACCAGATAAGCCTCATCAATATGGACCTGCCCATGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS CAA 90 bp GAGTTCCAGACTATGCCATCGGCCTCCACGGAACCATTGGTGCCATaGAGCTCAGTAAAGTTACGCACGCACTTGTGCCTCAGGTTGCCC +
Preference number: 6 (lower is better)
Translates to: EFQTMPSASTEPLVP*SSVKLRTHLCLRLP
Trigger: GGGCAACCTGAGGCACAAGTGCGTGCGTAACTTTACTGAGCTCAATGGCACCAATGGTTCCGTGGAGGCCGATGGCATAGTCTGGAACTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS TCA 72 bp TGCGCCGGGAGAAGTTCTCATTCATCATGTAGGCAATaGGTCCCTCTCGCTCGGGGGCATCCTCATCAGAGA +
Preference number: 6 (lower is better)
Translates to: CAGRSSHSSCRQ*VPLARGHPHQR
Trigger: TCTCTGATGAGGATGCCCCCGAGCGAGAGGGACTCATTGCCTACATGATGAATGAGAACTTCTCCCGGCGCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS GCA 72 bp CTCTCCTGCTGTACTGTTCTCGTCATCTGCAAAATCTaGCTCGGAGCCTTGGTCCCGTCGCCGGAATGTGAA +
Preference number: 6 (lower is better)
Translates to: LSCCTVLVICKI*LGALVPSPECE
Trigger: TTCACATTCCGGCGACGGGACCAAGGCTCCGAGGCAGATTTTGCAGATGACGAGAACAGTACAGCAGGAGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS GCA 72 bp TCAGCAAACGGGTCCATGACCACGAACTTCACCTTCTaGTTGATGGACATCCAGAGTGGGCAGCACTCCCAG +
Preference number: 6 (lower is better)
Translates to: SANGSMTTNFTF*LMDIQSGQHSQ
Trigger: CTGGGAGTGCTGCCCACTCTGGATGTCCATCAAGCAGAAGGTGAAGTTCGTGGTCATGGACCCGTTTGCTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS CAA 72 bp ACTGTTCTCGTCATCTGCAAAATCTGCCTCGGAGCCTaGGTCCCGTCGCCGGAATGTGAAAATGCTCCCTCG +
Preference number: 6 (lower is better)
Translates to: TVLVICKICLGA*VPSPECENAPS
Trigger: CGAGGGAGCATTTTCACATTCCGGCGACGGGACCAAGGCTCCGAGGCAGATTTTGCAGATGACGAGAACAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS CAA 72 bp GCAAACGGGTCCATGACCACGAACTTCACCTTCTGCTaGATGGACATCCAGAGTGGGCAGCACTCCCAGATG +
Preference number: 6 (lower is better)
Translates to: ANGSMTTNFTFC*MDIQSGQHSQM
Trigger: CATCTGGGAGTGCTGCCCACTCTGGATGTCCATCAAGCAGAAGGTGAAGTTCGTGGTCATGGACCCGTTTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS CAA 72 bp GACTTGATGGGACCCATCTCGGCAAAGCCTAAGGTGTaGGCCACGAGGCTGACCAGTGAGACGTCCACAATT +
Preference number: 6 (lower is better)
Translates to: DLMGPISAKPKV*ATRLTSETSTI
Trigger: AATTGTGGACGTCTCACTGGTCAGCCTCGTGGCCAACACCTTAGGCTTTGCCGAGATGGGTCCCATCAAGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS CAA 90 bp ACGTCCAGAGAGTTCCAGACTATGCCATCGGCCTCCACGGAACCATaGGTGCCATTGAGCTCAGTAAAGTTACGCACGCACTTGTGCCTC +
Preference number: 6 (lower is better)
Translates to: TSREFQTMPSASTEP*VPLSSVKLRTHLCL
Trigger: GAGGCACAAGTGCGTGCGTAACTTTACTGAGCTCAATGGCACCAATGGTTCCGTGGAGGCCGATGGCATAGTCTGGAACTCTCTGGACGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS CCA 72 bp GATGAGGTAATGCTGGGCAAAGCGATTCCAGCATGGTaGACACTTACGGTGGGACTCCTCCAACTCTTCCAG +
Preference number: 6 (lower is better)
Translates to: DEVMLGKAIPAW*TLTVGLLQLFQ
Trigger: CTGGAAGAGTTGGAGGAGTCCCACCGTAAGTGTCCACCATGCTGGAATCGCTTTGCCCAGCATTACCTCATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS CAA 72 bp ACTATGCCATCGGCCTCCACGGAACCATTGGTGCCATaGAGCTCAGTAAAGTTACGCACGCACTTGTGCCTC +
Preference number: 6 (lower is better)
Translates to: TMPSASTEPLVP*SSVKLRTHLCL
Trigger: GAGGCACAAGTGCGTGCGTAACTTTACTGAGCTCAATGGCACCAATGGTTCCGTGGAGGCCGATGGCATAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS CAA 72 bp GAGTTCCAGACTATGCCATCGGCCTCCACGGAACCATaGGTGCCATTGAGCTCAGTAAAGTTACGCACGCAC +
Preference number: 6 (lower is better)
Translates to: EFQTMPSASTEP*VPLSSVKLRTH
Trigger: GTGCGTGCGTAACTTTACTGAGCTCAATGGCACCAATGGTTCCGTGGAGGCCGATGGCATAGTCTGGAACTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS CCA 72 bp TTTCCTCCTCTTGCTCCTTCTCTCATGGTTGGTTACTaGGGCCAAAGGAGACATCTCCAGAGAGCTACGGGA +
Preference number: 6 (lower is better)
Translates to: FPPLAPSLMVGY*GQRRHLQRATG
Trigger: TCCCGTAGCTCTCTGGAGATGTCTCCTTTGGCCCCAGTAACCAACCATGAGAGAAGGAGCAAGAGGAGGAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS CCA 72 bp AAGGCCTGCTTGGTCACAATGTCGAATATGAAACCCTaGTACTTGTTCAGAGGCCGTGGGATGGGCTTCTGG +
Preference number: 6 (lower is better)
Translates to: KACLVTMSNMKP*YLFRGRGMGFW
Trigger: CCAGAAGCCCATCCCACGGCCTCTGAACAAGTACCAGGGTTTCATATTCGACATTGTGACCAAGCAGGCCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS GCA 72 bp GTATGGGTCAAGGGCGATGATCTTGAAGGTCATCTCTaGCGTGAAGATTCCCGTGAAGACCAAGTTTCCGAC +
Preference number: 6 (lower is better)
Translates to: VWVKGDDLEGHL*REDSREDQVSD
Trigger: GTCGGAAACTTGGTCTTCACGGGAATCTTCACGGCAGAGATGACCTTCAAGATCATCGCCCTTGACCCATAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS TCA 72 bp CTTTCACCTTGGTCCAGTACAACTCTCCAGTCACGTTaGAGGACTCACACTCGCTCTTGTTGTTCACAATGG +
Preference number: 6 (lower is better)
Translates to: LSPWSSTTLQSR*RTHTRSCCSQW
Trigger: CCATTGTGAACAACAAGAGCGAGTGTGAGTCCTTCAACGTGACTGGAGAGTTGTACTGGACCAAGGTGAAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS CAA 72 bp ATACACTCTCCTGTGAAGATGGCCACGAAGAGCAGGTaGATCTTGGCCAAGATGTTGACTTTTTCAGGGCTC +
Preference number: 6 (lower is better)
Translates to: IHSPVKMATKSR*ILAKMLTFSGL
Trigger: GAGCCCTGAAAAAGTCAACATCTTGGCCAAGATCAACCTGCTCTTCGTGGCCATCTTCACAGGAGAGTGTAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS CAA 72 bp ACTTTCACCTTGGTCCAGTACAACTCTCCAGTCACGTaGAAGGACTCACACTCGCTCTTGTTGTTCACAATG +
Preference number: 6 (lower is better)
Translates to: TFTLVQYNSPVT*KDSHSLLLFTM
Trigger: CATTGTGAACAACAAGAGCGAGTGTGAGTCCTTCAACGTGACTGGAGAGTTGTACTGGACCAAGGTGAAAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS CAA 72 bp CAGATGAGGAACATGATGGTAACATCGAAGGCCTGCTaGGTCACAATGTCGAATATGAAACCCTGGTACTTG +
Preference number: 6 (lower is better)
Translates to: QMRNMMVTSKAC*VTMSNMKPWYL
Trigger: CAAGTACCAGGGTTTCATATTCGACATTGTGACCAAGCAGGCCTTCGATGTTACCATCATGTTCCTCATCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS GCA 72 bp AAACAGATGAGGAACATGATGGTAACATCGAAGGCCTaGTTGGTCACAATGTCGAATATGAAACCCTGGTAC +
Preference number: 6 (lower is better)
Translates to: KQMRNMMVTSKA*LVTMSNMKPWY
Trigger: GTACCAGGGTTTCATATTCGACATTGTGACCAAGCAGGCCTTCGATGTTACCATCATGTTCCTCATCTGTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2
CDS CAA 90 bp ATGTTTAAACAGATGAGGAACATGATGGTAACATCGAAGGCCTGCTaGGTCACAATGTCGAATATGAAACCCTGGTACTTGTTCAGAGGC +
Preference number: 6 (lower is better)
Translates to: MFKQMRNMMVTSKAC*VTMSNMKPWYLFRG
Trigger: GCCTCTGAACAAGTACCAGGGTTTCATATTCGACATTGTGACCAAGCAGGCCTTCGATGTTACCATCATGTTCCTCATCTGTTTAAACAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065196.13
ENSMUST00000117911.8
ENSMUST00000120420.2