Pregenerated sensors for SCN1B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000019194Ensembl transcript IDs: ENSMUST00000098548.8, ENSMUST00000211945.2
Found 55 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | CCCTGCCCGCTCCCACCCTCGTGGCTCCACTGCAGAACTGTGAGGCTGGGGAGAGGGGCTGATCCCCACTaGAGGGCGGGAGGGTACCCG | + |
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Preference number: 2 (lower is better) Translates to: PCPLPPSWLHCRTVRLGRGADPH*RAGGYP Trigger: CGGGTACCCTCCCGCCCTGCAGTGGGGATCAGCCCC...TCTCCCCAGCCTCACAGTTCTGCAGTGGAGCCACGAGGGTGGGAGCGGGCAGGG 70% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000098548.8 ENSMUST00000211945.2 |
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| 3UTR-3UTR CCA 90 bp | AGTCCCTGCCCGCTCCCACCCTCGTGGCTCCACTGCAGAACTGTGAGGCTGGGGGTCCCTGAGCCCTCCTaGCTGGCGATGCGCAGACCC | + |
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Preference number: 2 (lower is better) Translates to: SPCPLPPSWLHCRTVRLGVPEPS*LAMRRP Trigger: GGGTCTGCGCATCGCCAGCCAGGAGGGCTCAGGGAC...CCCCAGCCTCACAGTTCTGCAGTGGAGCCACGAGGGTGGGAGCGGGCAGGGACT 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000211945.2 |
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| 3UTR-3UTR TCA 90 bp | TCCAGCCGGAGGAAGCGGAGGGGAGATGAGGCCCAGAACCTCCTGCCCACTACTGGGCTGGCTCTTCCATaGGGCGGAGCCCAGAGCCAG | + |
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Preference number: 2 (lower is better) Translates to: SSRRKRRGDEAQNLLPTTGLALP*GGAQSQ Trigger: CTGGCTCTGGGCTCCGCCTCATGGAAGAGCCAGCCC...AGTAGTGGGCAGGAGGTTCTGGGCCTCATCTCCCCTCCGCTTCCTCCGGCTGGA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098548.8 |
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| 3UTR-3UTR GCA 90 bp | ACCCCAGGTCCAGCCGGAGGAAGCGGAGGGGAGATGAGGCCCAGAACCTCCTGCCGGCTGGCCTGGCAGTaGGTGTGGGAAGTGGCCTAT | + |
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Preference number: 2 (lower is better) Translates to: TPGPAGGSGGEMRPRTSCRLAWQ*VWEVAY Trigger: ATAGGCCACTTCCCACACGCACTGCCAGGCCAGCCG...GCAGGAGGTTCTGGGCCTCATCTCCCCTCCGCTTCCTCCGGCTGGACCTGGGGT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098548.8 ENSMUST00000211945.2 |
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| 3UTR-3UTR CCA 90 bp | CCCTGCCCGCTCCCACCCTCGTGGCTCCACTGCAGAACTGTGAGGCTGGGGAGACCGCTCCCACCCTCGTaGCTCCACTGCAGAACTGTG | + |
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Preference number: 2 (lower is better) Translates to: PCPLPPSWLHCRTVRLGRPLPPS*LHCRTV Trigger: CACAGTTCTGCAGTGGAGCCACGAGGGTGGGAGCGG...TCTCCCCAGCCTCACAGTTCTGCAGTGGAGCCACGAGGGTGGGAGCGGGCAGGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098548.8 ENSMUST00000211945.2 |
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| 3UTR-3UTR TCA 90 bp | ACCCTCGTGGCTCCACTGCAGAACTGTGAGGCTGGGGAGACCGAAGGGCTGATCGGGCTGGCTCTTCCATaGGGCGGAGCCCAGAGCCTG | + |
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Preference number: 2 (lower is better) Translates to: TLVAPLQNCEAGETEGLIGLALP*GGAQSL Trigger: CAGGCTCTGGGCTCCGCCTCATGGAAGAGCCAGCCC...GATCAGCCCTTCGGTCTCCCCAGCCTCACAGTTCTGCAGTGGAGCCACGAGGGT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211945.2 |
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| 3UTR-3UTR CCA 90 bp | AAGGGAACCCCAGGTCCAGCCGGAGGAAGCGGAGGGGAGATGAGGCCCAGAACCTTCACCCATCATGCATaGCGGTGGGAGGGTAGGTGG | + |
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Preference number: 2 (lower is better) Translates to: KGTPGPAGGSGGEMRPRTFTHHA*RWEGRW Trigger: CCACCTACCCTCCCACCGCCATGCATGATGGGTGAA...GGTTCTGGGCCTCATCTCCCCTCCGCTTCCTCCGGCTGGACCTGGGGTTCCCTT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098548.8 ENSMUST00000211945.2 |
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| 3UTR-3UTR TCA 90 bp | CCCAAACAGGCAGCAAAAGCAGGGTGGGGCGGCCATATTGCTTCACCCATCATGGTGGGAGGCGGTGGGTaGGGTGGGATCAGTCCCTGC | + |
|
Preference number: 2 (lower is better) Translates to: PKQAAKAGWGGHIASPIMVGGGG*GGISPC Trigger: GCAGGGACTGATCCCACCTCACCCACCGCCTCCCAC...CATGATGGGTGAAGCAATATGGCCGCCCCACCCTGCTTTTGCTGCCTGTTTGGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098548.8 ENSMUST00000211945.2 |
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| 3UTR-3UTR TCA 90 bp | CCGGCTGGCCTGGCAGTGCGTGTGGGAAGTGGCCTATGTGCAAATCAGCAAAAAGTGGGAGGCGGTGGGTaGGGTGGGATCAGTCCCTGC | + |
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Preference number: 2 (lower is better) Translates to: PAGLAVRVGSGLCANQQKVGGGG*GGISPC Trigger: GCAGGGACTGATCCCACCTCACCCACCGCCTCCCAC...TTTTTGCTGATTTGCACATAGGCCACTTCCCACACGCACTGCCAGGCCAGCCGG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000098548.8 ENSMUST00000211945.2 |
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| 3UTR-3UTR CCA 90 bp | CAAAAGCAGGGTGGGGCGGCCATATTGCTTCACCCATCATGCATGGCGGTGGGAAGGCGGTGGGTGAGGTaGGATCAGTCCCTGCCCGCT | + |
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Preference number: 2 (lower is better) Translates to: QKQGGAAILLHPSCMAVGRRWVR*DQSLPA Trigger: AGCGGGCAGGGACTGATCCCACCTCACCCACCGCCT...TCCCACCGCCATGCATGATGGGTGAAGCAATATGGCCGCCCCACCCTGCTTTTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098548.8 ENSMUST00000211945.2 |
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| 3UTR-3UTR CCA 90 bp | ACCCCAGGTCCAGCCGGAGGAAGCGGAGGGGAGATGAGGCCCAGAACCTCCTGCAGTGCGTGTGGGAAGTaGCCTATGTGCAAATCAGCA | + |
|
Preference number: 2 (lower is better) Translates to: TPGPAGGSGGEMRPRTSCSACGK*PMCKSA Trigger: TGCTGATTTGCACATAGGCCACTTCCCACACGCACT...GCAGGAGGTTCTGGGCCTCATCTCCCCTCCGCTTCCTCCGGCTGGACCTGGGGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098548.8 ENSMUST00000211945.2 |
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| 3UTR-3UTR CCA 90 bp | ACAGGCAGCAAAAGCAGGGTGGGGCGGCCATATTGCTTCACCCATCATGCATGGCCGCTCCCACCCTCGTaGCTCCACTGCAGAACTGTG | + |
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Preference number: 2 (lower is better) Translates to: TGSKSRVGRPYCFTHHAWPLPPS*LHCRTV Trigger: CACAGTTCTGCAGTGGAGCCACGAGGGTGGGAGCGG...CCATGCATGATGGGTGAAGCAATATGGCCGCCCCACCCTGCTTTTGCTGCCTGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098548.8 ENSMUST00000211945.2 |
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| 3UTR-3UTR CCA 90 bp | GGCTGGCCTGGCAGTGCGTGTGGGAAGTGGCCTATGTGCAAATCAGCAAAAAGAAGGCGGTGGGTGAGGTaGGATCAGTCCCTGCCCGCT | + |
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Preference number: 2 (lower is better) Translates to: GWPGSACGKWPMCKSAKRRRWVR*DQSLPA Trigger: AGCGGGCAGGGACTGATCCCACCTCACCCACCGCCT...TCTTTTTGCTGATTTGCACATAGGCCACTTCCCACACGCACTGCCAGGCCAGCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000098548.8 ENSMUST00000211945.2 |
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| 3UTR-3UTR CCA 90 bp | CCCTGCCCGCTCCCACCCTCGTGGCTCCACTGCAGAACTGTGAGGCTGGGGAGACTGCAGGGTAAGAAGTaGAGACTTAAGAGTGTGTCC | + |
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Preference number: 2 (lower is better) Translates to: PCPLPPSWLHCRTVRLGRLQGKK*RLKSVS Trigger: GGACACACTCTTAAGTCTCCACTTCTTACCCTGCAG...TCTCCCCAGCCTCACAGTTCTGCAGTGGAGCCACGAGGGTGGGAGCGGGCAGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211945.2 |
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| 3UTR CCA 72 bp | ATCCCCACTGCAGGGCGGGAGGGTACCCGTAGGGGCTaGCTCTTCCATGAGGCGGAGCCCAGAGCCTGCAGG | + |
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Preference number: 3 (lower is better) Translates to: IPTAGREGTRRG*LFHEAEPRACR Trigger: CCTGCAGGCTCTGGGCTCCGCCTCATGGAAGAGCCAGCCCCTACGGGTACCCTCCCGCCCTGCAGTGGGGAT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000211945.2 |
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| 3UTR TCA 72 bp | GCCCGCTCCCACCCTCGTGGCTCCACTGCAGAACTGTaGGGCTGGGGAGACCGAAGGGCTGATCCCCACTGC | + |
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Preference number: 3 (lower is better) Translates to: ARSHPRGSTAEL*GWGDRRADPHC Trigger: GCAGTGGGGATCAGCCCTTCGGTCTCCCCAGCCTCACAGTTCTGCAGTGGAGCCACGAGGGTGGGAGCGGGC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098548.8 ENSMUST00000211945.2 |
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| 3UTR GCA 72 bp | CAAACAGGCAGCAAAAGCAGGGTGGGGCGGCCATATTaGTTCACCCATCATGCATGGCGGTGGGAGGGTAGG | + |
|
Preference number: 3 (lower is better) Translates to: QTGSKSRVGRPY*FTHHAWRWEGR Trigger: CCTACCCTCCCACCGCCATGCATGATGGGTGAAGCAATATGGCCGCCCCACCCTGCTTTTGCTGCCTGTTTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098548.8 ENSMUST00000211945.2 |
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| 3UTR CCA 72 bp | TGGAGACTTAAGAGTGTGTCCCTGAGCCCTCCTGGCTaGCGATGCGCAGACCCGTCGGTCCATCAACCTTAC | + |
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Preference number: 3 (lower is better) Translates to: WRLKSVSLSPPG*RCADPSVHQPY Trigger: GTAAGGTTGATGGACCGACGGGTCTGCGCATCGCCAGCCAGGAGGGCTCAGGGACACACTCTTAAGTCTCCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211945.2 |
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| CDS-3UTR CCA 90 bp | TCCCCACTGCAGGGCGGGAGGGTACCCGTAGGGGCTGGCTCTTCCATGAGGCGGGGTCCTGCAGGTCCTTaGTGCCCCGACTACCGTTCC | + |
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Preference number: 4 (lower is better) Translates to: SPLQGGRVPVGAGSSMRRGPAGP*CPDYRS Trigger: GGAACGGTAGTCGGGGCACCAAGGACCTGCAGGACC...CCGCCTCATGGAAGAGCCAGCCCCTACGGGTACCCTCCCGCCCTGCAGTGGGGA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000098548.8 ENSMUST00000211945.2 |
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| CDS-3UTR CCA 90 bp | AGTCCCTGCCCGCTCCCACCCTCGTGGCTCCACTGCAGAACTGTGAGGCTGGGGGGTCCTGCAGGTCCTTaGTGCCCCGACTACCGTTCC | + |
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Preference number: 4 (lower is better) Translates to: SPCPLPPSWLHCRTVRLGGPAGP*CPDYRS Trigger: GGAACGGTAGTCGGGGCACCAAGGACCTGCAGGACC...CCCCAGCCTCACAGTTCTGCAGTGGAGCCACGAGGGTGGGAGCGGGCAGGGACT 67% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000098548.8 ENSMUST00000211945.2 |
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| CDS-3UTR TCA 90 bp | CCCTGCCCGCTCCCACCCTCGTGGCTCCACTGCAGAACTGTGAGGCTGGGGAGAGGAAGGTCCACTCCGTaGAGGTTTCGGCGGTGGTCT | + |
|
Preference number: 4 (lower is better) Translates to: PCPLPPSWLHCRTVRLGRGRSTP*RFRRWS Trigger: AGACCACCGCCGAAACCTTCACGGAGTGGACCTTCC...TCTCCCCAGCCTCACAGTTCTGCAGTGGAGCCACGAGGGTGGGAGCGGGCAGGG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098548.8 ENSMUST00000211945.2 |
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| CDS-3UTR GCA 90 bp | CCAGGTCCAGCCGGAGGAAGCGGAGGGGAGATGAGGCCCAGAACCTCCTGCCCACCTGCAGGTCCTTGGTaGCCCGACTACCGTTCCACA | + |
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Preference number: 4 (lower is better) Translates to: PGPAGGSGGEMRPRTSCPPAGPW*PDYRST Trigger: TGTGGAACGGTAGTCGGGGCACCAAGGACCTGCAGG...TGGGCAGGAGGTTCTGGGCCTCATCTCCCCTCCGCTTCCTCCGGCTGGACCTGG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098548.8 ENSMUST00000211945.2 |
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| CDS-3UTR GCA 90 bp | CCCTGCCCGCTCCCACCCTCGTGGCTCCACTGCAGAACTGTGAGGCTGGGGAGAAAGATGGACAGGTCCTaGAGGTCCTTGGTGCCCCGA | + |
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Preference number: 4 (lower is better) Translates to: PCPLPPSWLHCRTVRLGRKMDRS*RSLVPR Trigger: TCGGGGCACCAAGGACCTGCAGGACCTGTCCATCTT...TCTCCCCAGCCTCACAGTTCTGCAGTGGAGCCACGAGGGTGGGAGCGGGCAGGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098548.8 ENSMUST00000211945.2 |
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| CDS-3UTR GCA 90 bp | AGGGTGGGGCGGCCATATTGCTTCACCCATCATGCATGGCGGTGGGAGGGTAGGCCTGCAGGTCCTTGGTaGCCCGACTACCGTTCCACA | + |
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Preference number: 4 (lower is better) Translates to: RVGRPYCFTHHAWRWEGRPAGPW*PDYRST Trigger: TGTGGAACGGTAGTCGGGGCACCAAGGACCTGCAGG...CCTACCCTCCCACCGCCATGCATGATGGGTGAAGCAATATGGCCGCCCCACCCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098548.8 ENSMUST00000211945.2 |
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| CDS-3UTR CCA 90 bp | AAGGGAACCCCAGGTCCAGCCGGAGGAAGCGGAGGGGAGATGAGGCCCAGAACCTCCACCACCTCCAGGTaGATCTTCTTGACGACGCTG | + |
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Preference number: 4 (lower is better) Translates to: KGTPGPAGGSGGEMRPRTSTTSR*IFLTTL Trigger: CAGCGTCGTCAAGAAGATCCACCTGGAGGTGGTGGA...GGTTCTGGGCCTCATCTCCCCTCCGCTTCCTCCGGCTGGACCTGGGGTTCCCTT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098548.8 ENSMUST00000211945.2 |
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| CDS-3UTR CCA 90 bp | CCCTGCCCGCTCCCACCCTCGTGGCTCCACTGCAGAACTGTGAGGCTGGGGAGAATGCCATATCTCTGTTaGCCTTGTCCACCACCTCCA | + |
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Preference number: 4 (lower is better) Translates to: PCPLPPSWLHCRTVRLGRMPYLC*PCPPPP Trigger: TGGAGGTGGTGGACAAGGCCAACAGAGATATGGCAT...TCTCCCCAGCCTCACAGTTCTGCAGTGGAGCCACGAGGGTGGGAGCGGGCAGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098548.8 ENSMUST00000211945.2 |
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| CDS-3UTR TCA 90 bp | CCCACTGCAGGGCGGGAGGGTACCCGTAGGGGCTGGCTCTTCCATGAGGCGGAGGTACATCATGATCTCTaGCACGATGGATGCCATATC | + |
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Preference number: 4 (lower is better) Translates to: PTAGREGTRRGWLFHEAEVHHDL*HDGCHI Trigger: GATATGGCATCCATCGTGTCAGAGATCATGATGTAC...CTCCGCCTCATGGAAGAGCCAGCCCCTACGGGTACCCTCCCGCCCTGCAGTGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098548.8 ENSMUST00000211945.2 |
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| CDS-3UTR TCA 90 bp | CCCAAACAGGCAGCAAAAGCAGGGTGGGGCGGCCATATTGCTTCACCCATCATGGGAAGGTCCACTCCGTaGAGGTTTCGGCGGTGGTCT | + |
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Preference number: 4 (lower is better) Translates to: PKQAAKAGWGGHIASPIMGRSTP*RFRRWS Trigger: AGACCACCGCCGAAACCTTCACGGAGTGGACCTTCC...CATGATGGGTGAAGCAATATGGCCGCCCCACCCTGCTTTTGCTGCCTGTTTGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098548.8 ENSMUST00000211945.2 |
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| CDS-3UTR TCA 90 bp | AGAGAGGGCGGGTGGGCCAGGGCTAGGAGGTGTCACAGGAAGGGAACCCCAGGTCATAGCGTAGGATCTTaGCAAATTCCTCTGTCCCCT | + |
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Preference number: 4 (lower is better) Translates to: REGGWARARRCHRKGTPGHSVGS*QIPLSP Trigger: AGGGGACAGAGGAATTTGTCAAGATCCTACGCTATG...ACCTGGGGTTCCCTTCCTGTGACACCTCCTAGCCCTGGCCCACCCGCCCTCTCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098548.8 ENSMUST00000211945.2 |
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| CDS-3UTR TCA 90 bp | AGACTTAAGAGTGTGTCCCTGAGCCCTCCTGGCTGGCGATGCGCAGACCCGTCGAATGGCCAGGTATTCTaGGGCGTTCTCTTGTGCAGC | + |
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Preference number: 4 (lower is better) Translates to: RLKSVSLSPPGWRCADPSNGQVF*GVLLCS Trigger: GCTGCACAAGAGAACGCCTCAGAATACCTGGCCATT...CGACGGGTCTGCGCATCGCCAGCCAGGAGGGCTCAGGGACACACTCTTAAGTCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211945.2 |
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| CDS-3UTR CCA 90 bp | CCGGCTGGCCTGGCAGTGCGTGTGGGAAGTGGCCTATGTGCAAATCAGCAAAAATCCTCTGTCCCCTTCTaGCGGAAGGTCCACTCCGTG | + |
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Preference number: 4 (lower is better) Translates to: PAGLAVRVGSGLCANQQKSSVPF*RKVHSV Trigger: CACGGAGTGGACCTTCCGCCAGAAGGGGACAGAGGA...TTTTTGCTGATTTGCACATAGGCCACTTCCCACACGCACTGCCAGGCCAGCCGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000098548.8 ENSMUST00000211945.2 |
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| CDS-3UTR TCA 90 bp | ACCCTCGTGGCTCCACTGCAGAACTGTGAGGCTGGGGAGACCGAAGGGCTGATCCATAGCGTAGGATCTTaGCAAATTCCTCTGTCCCCT | + |
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Preference number: 4 (lower is better) Translates to: TLVAPLQNCEAGETEGLIHSVGS*QIPLSP Trigger: AGGGGACAGAGGAATTTGTCAAGATCCTACGCTATG...GATCAGCCCTTCGGTCTCCCCAGCCTCACAGTTCTGCAGTGGAGCCACGAGGGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098548.8 ENSMUST00000211945.2 |
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| CDS-3UTR TCA 90 bp | CCCAAACAGGCAGCAAAAGCAGGGTGGGGCGGCCATATTGCTTCACCCATCATGCCAGGTGGATCTTCTTaGCGACGCTGGTGTTGTGCT | + |
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Preference number: 4 (lower is better) Translates to: PKQAAKAGWGGHIASPIMPGGSS*RRWCCA Trigger: AGCACAACACCAGCGTCGTCAAGAAGATCCACCTGG...CATGATGGGTGAAGCAATATGGCCGCCCCACCCTGCTTTTGCTGCCTGTTTGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098548.8 ENSMUST00000211945.2 |
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| CDS-3UTR GCA 90 bp | GCCTGGCAGTGCGTGTGGGAAGTGGCCTATGTGCAAATCAGCAAAAAGAAGGGGAAGATGGACAGGTCCTaGAGGTCCTTGGTGCCCCGA | + |
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Preference number: 4 (lower is better) Translates to: AWQCVWEVAYVQISKKKGKMDRS*RSLVPR Trigger: TCGGGGCACCAAGGACCTGCAGGACCTGTCCATCTT...CCCCTTCTTTTTGCTGATTTGCACATAGGCCACTTCCCACACGCACTGCCAGGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000098548.8 ENSMUST00000211945.2 |
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| CDS-3UTR TCA 90 bp | AAGCAGGGTGGGGCGGCCATATTGCTTCACCCATCATGCATGGCGGTGGGAGGGGTACATCATGATCTCTaGCACGATGGATGCCATATC | + |
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Preference number: 4 (lower is better) Translates to: KQGGAAILLHPSCMAVGGVHHDL*HDGCHI Trigger: GATATGGCATCCATCGTGTCAGAGATCATGATGTAC...CCCTCCCACCGCCATGCATGATGGGTGAAGCAATATGGCCGCCCCACCCTGCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098548.8 ENSMUST00000211945.2 |
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| CDS-3UTR TCA 90 bp | CCGGCTGGCCTGGCAGTGCGTGTGGGAAGTGGCCTATGTGCAAATCAGCAAAAAAATGGCCAGGTATTCTaGGGCGTTCTCTTGTGCAGC | + |
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Preference number: 4 (lower is better) Translates to: PAGLAVRVGSGLCANQQKNGQVF*GVLLCS Trigger: GCTGCACAAGAGAACGCCTCAGAATACCTGGCCATT...TTTTTGCTGATTTGCACATAGGCCACTTCCCACACGCACTGCCAGGCCAGCCGG 56% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt. Matches the following 2 transcripts: ENSMUST00000098548.8 ENSMUST00000211945.2 |
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| CDS-3UTR CCA 90 bp | CATGAGGCGGAGCCCAGAGCCTGCAGGGTAAGAAGTGGAGACTTAAGAGTGTGTTCCACCACCTCCAGGTaGATCTTCTTGACGACGCTG | + |
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Preference number: 4 (lower is better) Translates to: HEAEPRACRVRSGDLRVCSTTSR*IFLTTL Trigger: CAGCGTCGTCAAGAAGATCCACCTGGAGGTGGTGGA...ACACACTCTTAAGTCTCCACTTCTTACCCTGCAGGCTCTGGGCTCCGCCTCATG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211945.2 |
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| CDS-3UTR CCA 90 bp | ACAGGCAGCAAAAGCAGGGTGGGGCGGCCATATTGCTTCACCCATCATGCATGGATGCCATATCTCTGTTaGCCTTGTCCACCACCTCCA | + |
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Preference number: 4 (lower is better) Translates to: TGSKSRVGRPYCFTHHAWMPYLC*PCPPPP Trigger: TGGAGGTGGTGGACAAGGCCAACAGAGATATGGCAT...CCATGCATGATGGGTGAAGCAATATGGCCGCCCCACCCTGCTTTTGCTGCCTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098548.8 ENSMUST00000211945.2 |
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| CDS-3UTR GCA 90 bp | ACAGGCAGCAAAAGCAGGGTGGGGCGGCCATATTGCTTCACCCATCATGCATGGGCAGTACACCATCTCTaGCACAAGCCATATGGTCAA | + |
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Preference number: 4 (lower is better) Translates to: TGSKSRVGRPYCFTHHAWAVHHL*HKPYGQ Trigger: TTGACCATATGGCTTGTGGCAGAGATGGTGTACTGC...CCATGCATGATGGGTGAAGCAATATGGCCGCCCCACCCTGCTTTTGCTGCCTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098548.8 ENSMUST00000211945.2 |
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| CDS-3UTR CAA 90 bp | CACAGGAAGGGAACCCCAGGTCCAGCCGGAGGAAGCGGAGGGGAGATGAGGCCCAGGTCCTGCAGGTCCTaGGTGCCCCGACTACCGTTC | + |
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Preference number: 5 (lower is better) Translates to: HRKGTPGPAGGSGGEMRPRSCRS*VPRLPF Trigger: GAACGGTAGTCGGGGCACCAAGGACCTGCAGGACCT...GGGCCTCATCTCCCCTCCGCTTCCTCCGGCTGGACCTGGGGTTCCCTTCCTGTG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000098548.8 ENSMUST00000211945.2 |
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| CDS-3UTR CAA 90 bp | CCCACTGCAGGGCGGGAGGGTACCCGTAGGGGCTGGCTCTTCCATGAGGCGGAGATATCTCTGTTGGCCTaGTCCACCACCTCCAGGTGG | + |
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Preference number: 5 (lower is better) Translates to: PTAGREGTRRGWLFHEAEISLLA*STTSRW Trigger: CCACCTGGAGGTGGTGGACAAGGCCAACAGAGATAT...CTCCGCCTCATGGAAGAGCCAGCCCCTACGGGTACCCTCCCGCCCTGCAGTGGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098548.8 ENSMUST00000211945.2 |
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| CDS-3UTR CAA 90 bp | CGGCTGGCCTGGCAGTGCGTGTGGGAAGTGGCCTATGTGCAAATCAGCAAAAAGAGGTCCTGCAGGTCCTaGGTGCCCCGACTACCGTTC | + |
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Preference number: 5 (lower is better) Translates to: RLAWQCVWEVAYVQISKKRSCRS*VPRLPF Trigger: GAACGGTAGTCGGGGCACCAAGGACCTGCAGGACCT...CTTTTTGCTGATTTGCACATAGGCCACTTCCCACACGCACTGCCAGGCCAGCCG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000098548.8 ENSMUST00000211945.2 |
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| CDS-3UTR CAA 90 bp | AGACTTAAGAGTGTGTCCCTGAGCCCTCCTGGCTGGCGATGCGCAGACCCGTCGATATCTCTGTTGGCCTaGTCCACCACCTCCAGGTGG | + |
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Preference number: 5 (lower is better) Translates to: RLKSVSLSPPGWRCADPSISLLA*STTSRW Trigger: CCACCTGGAGGTGGTGGACAAGGCCAACAGAGATAT...CGACGGGTCTGCGCATCGCCAGCCAGGAGGGCTCAGGGACACACTCTTAAGTCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211945.2 |
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| CDS-3UTR CAA 90 bp | GGCTGGCCTGGCAGTGCGTGTGGGAAGTGGCCTATGTGCAAATCAGCAAAAAGATCCAGGTGGATCTTCTaGACGACGCTGGTGTTGTGC | + |
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Preference number: 5 (lower is better) Translates to: GWPGSACGKWPMCKSAKRSRWIF*TTLVLC Trigger: GCACAACACCAGCGTCGTCAAGAAGATCCACCTGGA...TCTTTTTGCTGATTTGCACATAGGCCACTTCCCACACGCACTGCCAGGCCAGCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000098548.8 ENSMUST00000211945.2 |
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| CDS TCA 90 bp | GCCTGTACAGTTTTCTTTGCTCTCGGATGTAATGGCCAGGTATTCTaGGGCGTTCTCTTGTGCAGCAGCCTCCGTAGCAGCAGCAATCTT | + |
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Preference number: 5 (lower is better) Translates to: ACTVFFALGCNGQVF*GVLLCSSLRSSSNL Trigger: AAGATTGCTGCTGCTACGGAGGCTGCTGCACAAGAGAACGCCTCAGAATACCTGGCCATTACATCCGAGAGCAAAGAAAACTGTACAGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098548.8 ENSMUST00000211945.2 |
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| CDS-3UTR CAA 90 bp | GGCTGGCCTGGCAGTGCGTGTGGGAAGTGGCCTATGTGCAAATCAGCAAAAAGAGAGATGCACAGGATTTaGAAGGTCATCCCATACACA | + |
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Preference number: 5 (lower is better) Translates to: GWPGSACGKWPMCKSAKREMHRI*KVIPYT Trigger: TGTGTATGGGATGACCTTCAAAATCCTGTGCATCTC...TCTTTTTGCTGATTTGCACATAGGCCACTTCCCACACGCACTGCCAGGCCAGCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000098548.8 ENSMUST00000211945.2 |
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| CDS-3UTR CAA 90 bp | CATGAGGCGGAGCCCAGAGCCTGCAGGGTAAGAAGTGGAGACTTAAGAGTGTGTGAGATGCACAGGATTTaGAAGGTCATCCCATACACA | + |
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Preference number: 5 (lower is better) Translates to: HEAEPRACRVRSGDLRVCEMHRI*KVIPYT Trigger: TGTGTATGGGATGACCTTCAAAATCCTGTGCATCTC...ACACACTCTTAAGTCTCCACTTCTTACCCTGCAGGCTCTGGGCTCCGCCTCATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211945.2 |
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| CDS TCA 90 bp | AAGCCATATGGTCAACACCACAATGAGCACGTACATCATGATCTCTaGCACGATGGATGCCATATCTCTGTTGGCCTTGTCCACCACCTC | + |
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Preference number: 5 (lower is better) Translates to: KPYGQHHNEHVHHDL*HDGCHISVGLVHHL Trigger: GAGGTGGTGGACAAGGCCAACAGAGATATGGCATCCATCGTGTCAGAGATCATGATGTACGTGCTCATTGTGGTGTTGACCATATGGCTT 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098548.8 ENSMUST00000211945.2 |
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| CDS GCA 90 bp | AGCCTCCGTAGCAGCAGCAATCTTCTTGTAGCAGTACACCATCTCTaGCACAAGCCATATGGTCAACACCACAATGAGCACGTACATCAT | + |
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Preference number: 5 (lower is better) Translates to: SLRSSSNLLVAVHHL*HKPYGQHHNEHVHH Trigger: ATGATGTACGTGCTCATTGTGGTGTTGACCATATGGCTTGTGGCAGAGATGGTGTACTGCTACAAGAAGATTGCTGCTGCTACGGAGGCT 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098548.8 ENSMUST00000211945.2 |
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| CDS TCA 72 bp | ATTCCTCTGTCCCCTTCTGGCGGAAGGTCCACTCCGTaGAGGTTTCGGCGGTGGTCTCACTACGACGCTTAC | + |
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Preference number: 6 (lower is better) Translates to: IPLSPSGGRSTP*RFRRWSHYDAY Trigger: GTAAGCGTCGTAGTGAGACCACCGCCGAAACCTTCACGGAGTGGACCTTCCGCCAGAAGGGGACAGAGGAAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098548.8 ENSMUST00000211945.2 |
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| CDS CAA 90 bp | TCGGCGGTGGTCTCACTACGACGCTTACAGGAGATGCACAGGATTTaGAAGGTCATCCCATACACAGCCTCGGTATCGGAATCCACCTCC | + |
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Preference number: 6 (lower is better) Translates to: SAVVSLRRLQEMHRI*KVIPYTASVSESTS Trigger: GGAGGTGGATTCCGATACCGAGGCTGTGTATGGGATGACCTTCAAAATCCTGTGCATCTCCTGTAAGCGTCGTAGTGAGACCACCGCCGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098548.8 ENSMUST00000211945.2 |
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| CDS TCA 72 bp | GTTTTCTTTGCTCTCGGATGTAATGGCCAGGTATTCTaGGGCGTTCTCTTGTGCAGCAGCCTCCGTAGCAGC | + |
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Preference number: 6 (lower is better) Translates to: VFFALGCNGQVF*GVLLCSSLRSS Trigger: GCTGCTACGGAGGCTGCTGCACAAGAGAACGCCTCAGAATACCTGGCCATTACATCCGAGAGCAAAGAAAAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098548.8 ENSMUST00000211945.2 |
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| CDS CAA 72 bp | GTCTCACTACGACGCTTACAGGAGATGCACAGGATTTaGAAGGTCATCCCATACACAGCCTCGGTATCGGAA | + |
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Preference number: 6 (lower is better) Translates to: VSLRRLQEMHRI*KVIPYTASVSE Trigger: TTCCGATACCGAGGCTGTGTATGGGATGACCTTCAAAATCCTGTGCATCTCCTGTAAGCGTCGTAGTGAGAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098548.8 ENSMUST00000211945.2 |
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| CDS TCA 72 bp | GGTCAACACCACAATGAGCACGTACATCATGATCTCTaGCACGATGGATGCCATATCTCTGTTGGCCTTGTC | + |
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Preference number: 6 (lower is better) Translates to: GQHHNEHVHHDL*HDGCHISVGLV Trigger: GACAAGGCCAACAGAGATATGGCATCCATCGTGTCAGAGATCATGATGTACGTGCTCATTGTGGTGTTGACC 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098548.8 ENSMUST00000211945.2 |
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| CDS GCA 72 bp | AGCAGCAGCAATCTTCTTGTAGCAGTACACCATCTCTaGCACAAGCCATATGGTCAACACCACAATGAGCAC | + |
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Preference number: 6 (lower is better) Translates to: SSSNLLVAVHHL*HKPYGQHHNEH Trigger: GTGCTCATTGTGGTGTTGACCATATGGCTTGTGGCAGAGATGGTGTACTGCTACAAGAAGATTGCTGCTGCT 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098548.8 ENSMUST00000211945.2 |
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