RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SCN1A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000064329

Ensembl transcript IDs: ENSMUST00000077489.12, ENSMUST00000094951.10, ENSMUST00000112366.8, ENSMUST00000112371.9, ENSMUST00000138910.3, ENSMUST00000156865.3, ENSMUST00000200839.4

Found 360 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TTTGGCTTTTTCATCCTTCCCTTCCTGCTCGTGTTTCTCCACGATTaGCTTTGTCACCCGATCGTAGGAGGGCGGACAAGCTGCTGTGGA +
Preference number: 1 (lower is better)
Translates to: FGFFILPFLLVFLHD*LCHPIVGGRTSCCG
Trigger: TCCACAGCAGCTTGTCCGCCCTCCTACGATCGGGTGACAAAGCCAATCGTGGAGAAACACGAGCAGGAAGGGAAGGATGAAAAAGCCAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000156865.3
ENSMUST00000200839.4
3UTR TCA 90 bp CCGTTGTGCAGACGGGAGGGCCATAAGGATGTCAACACTCCCAGGTaGCACACCGGGAAAAGAGTTCCTTTAGTCTATTTCCCAACAGAA +
Preference number: 1 (lower is better)
Translates to: PLCRREGHKDVNTPR*HTGKRVPLVYFPTE
Trigger: TTCTGTTGGGAAATAGACTAAAGGAACTCTTTTCCCGGTGTGTCACCTGGGAGTGTTGACATCCTTATGGCCCTCCCGTCTGCACAACGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
3UTR GCA 90 bp TTCGACTTTTTCTCATGCATGATCCTAAGGTGCAACATGCCCTCATaGGAAACCACACCGTTGTGCAGACGGGAGGGCCATAAGGATGTC +
Preference number: 1 (lower is better)
Translates to: FDFFSCMILRCNMPS*ETTPLCRREGHKDV
Trigger: GACATCCTTATGGCCCTCCCGTCTGCACAACGGTGTGGTTTCGCATGAGGGCATGTTGCACCTTAGGATCATGCATGAGAAAAAGTCGAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
3UTR GCA 90 bp CTCCACGATTGGCTTTGTCACCCGATCGTAGGAGGGCGGACAAGCTaGTGTGGACATTGTCAGGTCAGTTTTCTCCGTAATAGAGTTTTC +
Preference number: 1 (lower is better)
Translates to: LHDWLCHPIVGGRTS*CGHCQVSFLRNRVF
Trigger: GAAAACTCTATTACGGAGAAAACTGACCTGACAATGTCCACAGCAGCTTGTCCGCCCTCCTACGATCGGGTGACAAAGCCAATCGTGGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000156865.3
ENSMUST00000200839.4
3UTR GCA 90 bp TACCCTCCTGTCAAGGTTATCTCCCCTTTACACAGTCACAGAGTTTaGCGACAAGGGGGTCACTGTCTTATTGAGGCACTGACCTTAAAG +
Preference number: 1 (lower is better)
Translates to: YPPVKVISPLHSHRV*RQGGHCLIEALTLK
Trigger: CTTTAAGGTCAGTGCCTCAATAAGACAGTGACCCCCTTGTCGGCAAACTCTGTGACTGTGTAAAGGGGAGATAACCTTGACAGGAGGGTA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
3UTR GCA 90 bp TGTCTTTGCTTTCCTTTCGACTTTTTCTCATGCATGATCCTAAGGTaGAACATGCCCTCATGCGAAACCACACCGTTGTGCAGACGGGAG +
Preference number: 1 (lower is better)
Translates to: CLCFPFDFFSCMILR*NMPSCETTPLCRRE
Trigger: CTCCCGTCTGCACAACGGTGTGGTTTCGCATGAGGGCATGTTGCACCTTAGGATCATGCATGAGAAAAAGTCGAAAGGAAAGCAAAGACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
3UTR CCA 90 bp CGTGGTAATATCGACATGCATTGGCAGCATCCACACTATCTACAATaGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTAC +
Preference number: 1 (lower is better)
Translates to: RGNIDMHWQHPHYLQ*YRVQYISGGQLALY
Trigger: GTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAGATAGTGTGGATGCTGCCAATGCATGTCGATATTACCACG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
3UTR TCA 90 bp CACCGGGCGGTCTCATTTCTTTCTATTAGTTTTAGGCAATCAGAATaGTTATTGACTTCGCTGATCTCAAATATGTCACCAGTTGTGGTG +
Preference number: 1 (lower is better)
Translates to: HRAVSFLSISFRQSE*LLTSLISNMSPVVV
Trigger: CACCACAACTGGTGACATATTTGAGATCAGCGAAGTCAATAATCATTCTGATTGCCTAAAACTAATAGAAAGAAATGAGACCGCCCGGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200839.4
3UTR CAA 90 bp CTTTGGCTTTTTCATCCTTCCCTTCCTGCTCGTGTTTCTCCACGATaGGCTTTGTCACCCGATCGTAGGAGGGCGGACAAGCTGCTGTGG +
Preference number: 2 (lower is better)
Translates to: LWLFHPSLPARVSPR*ALSPDRRRADKLLW
Trigger: CCACAGCAGCTTGTCCGCCCTCCTACGATCGGGTGACAAAGCCAATCGTGGAGAAACACGAGCAGGAAGGGAAGGATGAAAAAGCCAAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000156865.3
ENSMUST00000200839.4
3UTR-3UTR TCA 90 bp GTGTTTCTCCACGATTGGCTTTGTCACCCGATCGTAGGAGGGCGGACAAGCTGCTTGGTTGTGGCAAATTaGGAGGGGGTTCTAGAGCAG +
Preference number: 2 (lower is better)
Translates to: VFLHDWLCHPIVGGRTSCLVVAN*EGVLEQ
Trigger: CTGCTCTAGAACCCCCTCTCAATTTGCCACAACCAA...GCAGCTTGTCCGCCCTCCTACGATCGGGTGACAAAGCCAATCGTGGAGAAACAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000156865.3
ENSMUST00000200839.4
3UTR CAA 90 bp CTTTTTCATCCTTCCCTTCCTGCTCGTGTTTCTCCACGATTGGCTTaGTCACCCGATCGTAGGAGGGCGGACAAGCTGCTGTGGACATTG +
Preference number: 2 (lower is better)
Translates to: LFHPSLPARVSPRLA*SPDRRRADKLLWTL
Trigger: CAATGTCCACAGCAGCTTGTCCGCCCTCCTACGATCGGGTGACAAAGCCAATCGTGGAGAAACACGAGCAGGAAGGGAAGGATGAAAAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000156865.3
ENSMUST00000200839.4
3UTR-3UTR TCA 90 bp CCTGCTCGTGTTTCTCCACGATTGGCTTTGTCACCCGATCGTAGGAGGGCGGACTGTTCCATCCAATGGTaGAATAATAATGGCGGAGCG +
Preference number: 2 (lower is better)
Translates to: PARVSPRLALSPDRRRADCSIQW*NNNGGA
Trigger: CGCTCCGCCATTATTATTTCACCATTGGATGGAACA...GTCCGCCCTCCTACGATCGGGTGACAAAGCCAATCGTGGAGAAACACGAGCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200839.4
3UTR-3UTR TCA 90 bp CCCTTCCTGCTCGTGTTTCTCCACGATTGGCTTTGTCACCCGATCGTAGGAGGGATTTTTCAAATTCCATaGACTGGGTGGCGTCAGGGT +
Preference number: 2 (lower is better)
Translates to: PFLLVFLHDWLCHPIVGGIFQIP*TGWRQG
Trigger: ACCCTGACGCCACCCAGTTCATGGAATTTGAAAAAT...CCCTCCTACGATCGGGTGACAAAGCCAATCGTGGAGAAACACGAGCAGGAAGGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000156865.3
ENSMUST00000200839.4
3UTR-3UTR TCA 90 bp GTGTTTCTCCACGATTGGCTTTGTCACCCGATCGTAGGAGGGCGGACAAGCTGCCACCAGGTTGATGCGTaGCAAAATGCTTGTCACATA +
Preference number: 2 (lower is better)
Translates to: VFLHDWLCHPIVGGRTSCHQVDA*QNACHI
Trigger: TATGTGACAAGCATTTTGTCACGCATCAACCTGGTG...GCAGCTTGTCCGCCCTCCTACGATCGGGTGACAAAGCCAATCGTGGAGAAACAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200839.4
3UTR-3UTR CCA 90 bp CCACGATTGGCTTTGTCACCCGATCGTAGGAGGGCGGACAAGCTGCTGTGGACAGAGCTGAAGTTTGTTTaGTTGTGGCAAATTGAGAGG +
Preference number: 2 (lower is better)
Translates to: PRLALSPDRRRADKLLWTELKFV*LWQIER
Trigger: CCTCTCAATTTGCCACAACCAAACAAACTTCAGCTC...TGTCCACAGCAGCTTGTCCGCCCTCCTACGATCGGGTGACAAAGCCAATCGTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000156865.3
ENSMUST00000200839.4
3UTR-3UTR TCA 90 bp TTGTCACCCGATCGTAGGAGGGCGGACAAGCTGCTGTGGACATTGTCAGGTCAGCAGTCAGTTTGGCATTaGCTTCTTAAAGGAGTCCTT +
Preference number: 2 (lower is better)
Translates to: LSPDRRRADKLLWTLSGQQSVWH*LLKGVL
Trigger: AAGGACTCCTTTAAGAAGTCAATGCCAAACTGACTG...CTGACCTGACAATGTCCACAGCAGCTTGTCCGCCCTCCTACGATCGGGTGACAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200839.4
3UTR-3UTR TCA 90 bp CCACGATTGGCTTTGTCACCCGATCGTAGGAGGGCGGACAAGCTGCTGTGGACAGTCATAAAGATGTCTTaGCCTCCAAACTTCTTCTTT +
Preference number: 2 (lower is better)
Translates to: PRLALSPDRRRADKLLWTVIKMS*PPNFFF
Trigger: AAAGAAGAAGTTTGGAGGTCAAGACATCTTTATGAC...TGTCCACAGCAGCTTGTCCGCCCTCCTACGATCGGGTGACAAAGCCAATCGTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200839.4
3UTR-3UTR TCA 90 bp CCCTTCCTGCTCGTGTTTCTCCACGATTGGCTTTGTCACCCGATCGTAGGAGGGTCAAAAACCATTCCTTaGAATTTGTTTCCAGGTCGA +
Preference number: 2 (lower is better)
Translates to: PFLLVFLHDWLCHPIVGGSKTIP*NLFPGR
Trigger: TCGACCTGGAAACAAATTTCAAGGAATGGTTTTTGA...CCCTCCTACGATCGGGTGACAAAGCCAATCGTGGAGAAACACGAGCAGGAAGGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000200839.4
3UTR-3UTR GCA 90 bp CCTGCTCGTGTTTCTCCACGATTGGCTTTGTCACCCGATCGTAGGAGGGCGGACCCAAACTTCTTCTTTTaGTGGTTGAAATTGTCGATA +
Preference number: 2 (lower is better)
Translates to: PARVSPRLALSPDRRRADPNFFF*WLKLSI
Trigger: TATCGACAATTTCAACCAGCAAAAGAAGAAGTTTGG...GTCCGCCCTCCTACGATCGGGTGACAAAGCCAATCGTGGAGAAACACGAGCAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200839.4
3UTR-3UTR TCA 90 bp GGACAAGCTGCTGTGGACATTGTCAGGTCAGTTTTCTCCGTAATAGAGTTTTCGTTGGTTGTGGCAAATTaGGAGGGGGTTCTAGAGCAG +
Preference number: 2 (lower is better)
Translates to: GQAAVDIVRSVFSVIEFSLVVAN*EGVLEQ
Trigger: CTGCTCTAGAACCCCCTCTCAATTTGCCACAACCAA...CGAAAACTCTATTACGGAGAAAACTGACCTGACAATGTCCACAGCAGCTTGTCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000156865.3
ENSMUST00000200839.4
3UTR-3UTR CCA 90 bp GGGCGGACAAGCTGCTGTGGACATTGTCAGGTCAGTTTTCTCCGTAATAGAGTTAAGTTTGTTTGGTTGTaGCAAATTGAGAGGGGGTTC +
Preference number: 2 (lower is better)
Translates to: GRTSCCGHCQVSFLRNRVKFVWL*QIERGF
Trigger: GAACCCCCTCTCAATTTGCCACAACCAAACAAACTT...AACTCTATTACGGAGAAAACTGACCTGACAATGTCCACAGCAGCTTGTCCGCCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000156865.3
ENSMUST00000200839.4
3UTR-3UTR GCA 90 bp GCATCCACACTATCTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCATGATCCTAAGGTaGAACATGCCCTCATGCGAA +
Preference number: 2 (lower is better)
Translates to: ASTLSTMVQSTVYFRWTACMILR*NMPSCE
Trigger: TTCGCATGAGGGCATGTTGCACCTTAGGATCATGCA...AGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAGATAGTGTGGATGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
3UTR-3UTR TCA 90 bp GAGGAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTCAGTCAGTTTGGCATTaGCTTCTTAAAGGAGTCCTT +
Preference number: 2 (lower is better)
Translates to: EEAGIYKGFFWSIRSARVQSVWH*LLKGVL
Trigger: AAGGACTCCTTTAAGAAGTCAATGCCAAACTGACTG...AACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTCCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
3UTR-3UTR TCA 90 bp TGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTTCTCGTGTGACTCCAGACATTTaGATGAAGTTTGCACCTCCT +
Preference number: 2 (lower is better)
Translates to: WYRVQYISGGQLALYISRVTPDI*MKFAPP
Trigger: AGGAGGTGCAAACTTCATTCAAATGTCTGGAGTCAC...ACGAGAAATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
3UTR-3UTR TCA 90 bp TGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTTCTCGTAACCTTGCTGAGAGCTaGAGATGGCTAAACAAAGTG +
Preference number: 2 (lower is better)
Translates to: WYRVQYISGGQLALYISRNLAES*RWLNKV
Trigger: CACTTTGTTTAGCCATCTTCAGCTCTCAGCAAGGTT...ACGAGAAATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
3UTR-3UTR TCA 90 bp GGGCGGACAAGCTGCTGTGGACATTGTCAGGTCAGTTTTCTCCGTAATAGAGTTTTTAGGCAATCAGAATaGTTATTGACTTCGCTGATC +
Preference number: 2 (lower is better)
Translates to: GRTSCCGHCQVSFLRNRVFRQSE*LLTSLI
Trigger: GATCAGCGAAGTCAATAATCATTCTGATTGCCTAAA...AACTCTATTACGGAGAAAACTGACCTGACAATGTCCACAGCAGCTTGTCCGCCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000200839.4
3UTR-3UTR GCA 90 bp GAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTGGGATGTGGCAGTTGAAATaGAAACGGTGGATAGAGTTA +
Preference number: 2 (lower is better)
Translates to: EAGIYKGFFWSIRSARVGMWQLK*KRWIEL
Trigger: TAACTCTATCCACCGTTTGCATTTCAACTGCCACAT...CCCAACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
3UTR-3UTR CCA 90 bp GGACAAGCTGCTGTGGACATTGTCAGGTCAGTTTTCTCCGTAATAGAGTTTTCGGAGCTGAAGTTTGTTTaGTTGTGGCAAATTGAGAGG +
Preference number: 2 (lower is better)
Translates to: GQAAVDIVRSVFSVIEFSELKFV*LWQIER
Trigger: CCTCTCAATTTGCCACAACCAAACAAACTTCAGCTC...CGAAAACTCTATTACGGAGAAAACTGACCTGACAATGTCCACAGCAGCTTGTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000156865.3
ENSMUST00000200839.4
3UTR-3UTR CCA 90 bp GGGCGGACAAGCTGCTGTGGACATTGTCAGGTCAGTTTTCTCCGTAATAGAGTTGTAGTTCAACATTTCTaGAATCAACTGCAGCATACA +
Preference number: 2 (lower is better)
Translates to: GRTSCCGHCQVSFLRNRVVVQHF*NQLQHT
Trigger: TGTATGCTGCAGTTGATTCCAGAAATGTTGAACTAC...AACTCTATTACGGAGAAAACTGACCTGACAATGTCCACAGCAGCTTGTCCGCCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200839.4
3UTR-3UTR TCA 90 bp GCATCCACACTATCTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTCAGTCAGTTTGGCATTaGCTTCTTAAAGGAGTCCTT +
Preference number: 2 (lower is better)
Translates to: ASTLSTMVQSTVYFRWTAQSVWH*LLKGVL
Trigger: AAGGACTCCTTTAAGAAGTCAATGCCAAACTGACTG...AGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAGATAGTGTGGATGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
3UTR-3UTR TCA 90 bp GCATCCACACTATCTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTCTAAGGACTAGATTTTaGCAAACCCAGCTCAGCAAA +
Preference number: 2 (lower is better)
Translates to: ASTLSTMVQSTVYFRWTALRTRF*QTQLSK
Trigger: TTTGCTGAGCTGGGTTTGTCAAAATCTAGTCCTTAG...AGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAGATAGTGTGGATGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
3UTR-3UTR TCA 90 bp CTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTAACCTTGCTGAGAGCTaGAGATGGCTAAACAAAGTG +
Preference number: 2 (lower is better)
Translates to: LQWYRVQYISGGQLALYINLAES*RWLNKV
Trigger: CACTTTGTTTAGCCATCTTCAGCTCTCAGCAAGGTT...AATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
3UTR-3UTR GCA 90 bp GAGGAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTATGTGGCAGTTGAAATaGAAACGGTGGATAGAGTTA +
Preference number: 2 (lower is better)
Translates to: EEAGIYKGFFWSIRSARVMWQLK*KRWIEL
Trigger: TAACTCTATCCACCGTTTGCATTTCAACTGCCACAT...AACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTCCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
3UTR-3UTR TCA 90 bp CTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTCTAAGGACTAGATTTTaGCAAACCCAGCTCAGCAAA +
Preference number: 2 (lower is better)
Translates to: LQWYRVQYISGGQLALYILRTRF*QTQLSK
Trigger: TTTGCTGAGCTGGGTTTGTCAAAATCTAGTCCTTAG...AATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
3UTR-3UTR TCA 90 bp CTAAACAAAGTGCAGGAGGAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTGTGACTCCAGACATTTaGATGAAGTTTGCACCTCCT +
Preference number: 2 (lower is better)
Translates to: LNKVQEEAGIYKGFFWSIVTPDI*MKFAPP
Trigger: AGGAGGTGCAAACTTCATTCAAATGTCTGGAGTCAC...AATTGACCAAAAGAACCCTTTATAAATCCCCGCTTCCTCCTGCACTTTGTTTAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
3UTR-3UTR TCA 90 bp AGCTGCTGTGGACATTGTCAGGTCAGTTTTCTCCGTAATAGAGTTTTCGTTTATATTTTTCAAATTCCATaGACTGGGTGGCGTCAGGGT +
Preference number: 2 (lower is better)
Translates to: SCCGHCQVSFLRNRVFVYIFQIP*TGWRQG
Trigger: ACCCTGACGCCACCCAGTTCATGGAATTTGAAAAAT...ATAAACGAAAACTCTATTACGGAGAAAACTGACCTGACAATGTCCACAGCAGCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000156865.3
ENSMUST00000200839.4
3UTR-3UTR TCA 90 bp CTAAACAAAGTGCAGGAGGAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCAGTCAGTTTGGCATTaGCTTCTTAAAGGAGTCCTT +
Preference number: 2 (lower is better)
Translates to: LNKVQEEAGIYKGFFWSIQSVWH*LLKGVL
Trigger: AAGGACTCCTTTAAGAAGTCAATGCCAAACTGACTG...AATTGACCAAAAGAACCCTTTATAAATCCCCGCTTCCTCCTGCACTTTGTTTAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
3UTR-3UTR TCA 90 bp CTAAACAAAGTGCAGGAGGAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCCGCAGAAACACAGATaGCATAGAACTGTTGAAGAA +
Preference number: 2 (lower is better)
Translates to: LNKVQEEAGIYKGFFWSIPQKHR*HRTVEE
Trigger: TTCTTCAACAGTTCTATGTCATCTGTGTTTCTGCGG...AATTGACCAAAAGAACCCTTTATAAATCCCCGCTTCCTCCTGCACTTTGTTTAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
3UTR-3UTR TCA 90 bp CTAAACAAAGTGCAGGAGGAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCTCCAGACATTTGAATaGAGTTTGCACCTCCTAAGA +
Preference number: 2 (lower is better)
Translates to: LNKVQEEAGIYKGFFWSILQTFE*SLHLLR
Trigger: TCTTAGGAGGTGCAAACTTCATTCAAATGTCTGGAG...AATTGACCAAAAGAACCCTTTATAAATCCCCGCTTCCTCCTGCACTTTGTTTAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
3UTR-3UTR GCA 90 bp CTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTATGTGGCAGTTGAAATaGAAACGGTGGATAGAGTTA +
Preference number: 2 (lower is better)
Translates to: LQWYRVQYISGGQLALYIMWQLK*KRWIEL
Trigger: TAACTCTATCCACCGTTTGCATTTCAACTGCCACAT...AATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
3UTR-3UTR GCA 90 bp GCAAATATCTTCCATGAAAAACTGCTGTGGACAGAAAGTAAGAAAAGTGATTGTTTCCGGTGGACAGCTTaGACTCTACATTTCTCGTGG +
Preference number: 2 (lower is better)
Translates to: ANIFHEKLLWTESKKSDCFRWTA*TLHFSW
Trigger: CCACGAGAAATGTAGAGTGCAAGCTGTCCACCGGAA...ACAATCACTTTTCTTACTTTCTGTCCACAGCAGTTTTTCATGGAAGATATTTGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
3UTR-3UTR GCA 90 bp GGACAAGCTGCTGTGGACATTGTCAGGTCAGTTTTCTCCGTAATAGAGTTTTCGATTTCTGGAATCAACTaGAGCATACATGATATCCAT +
Preference number: 2 (lower is better)
Translates to: GQAAVDIVRSVFSVIEFSISGIN*SIHDIH
Trigger: ATGGATATCATGTATGCTGCAGTTGATTCCAGAAAT...CGAAAACTCTATTACGGAGAAAACTGACCTGACAATGTCCACAGCAGCTTGTCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000200839.4
3UTR-3UTR CCA 90 bp AGCTGCTGTGGACATTGTCAGGTCAGTTTTCTCCGTAATAGAGTTTTCGTTTATAAGTTTGTTTGGTTGTaGCAAATTGAGAGGGGGTTC +
Preference number: 2 (lower is better)
Translates to: SCCGHCQVSFLRNRVFVYKFVWL*QIERGF
Trigger: GAACCCCCTCTCAATTTGCCACAACCAAACAAACTT...ATAAACGAAAACTCTATTACGGAGAAAACTGACCTGACAATGTCCACAGCAGCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000156865.3
ENSMUST00000200839.4
3UTR-3UTR GCA 90 bp GCAAATATCTTCCATGAAAAACTGCTGTGGACAGAAAGTAAGAAAAGTGATTGTTGCATGATCCTAAGGTaGAACATGCCCTCATGCGAA +
Preference number: 2 (lower is better)
Translates to: ANIFHEKLLWTESKKSDCCMILR*NMPSCE
Trigger: TTCGCATGAGGGCATGTTGCACCTTAGGATCATGCA...ACAATCACTTTTCTTACTTTCTGTCCACAGCAGTTTTTCATGGAAGATATTTGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
3UTR-3UTR GCA 90 bp TGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTTCTCGTTTGAAGAACTGTCTTTaGTTTCCTTTCGACTTTTTC +
Preference number: 2 (lower is better)
Translates to: WYRVQYISGGQLALYISRLKNCL*FPFDFF
Trigger: GAAAAAGTCGAAAGGAAAGCAAAGACAGTTCTTCAA...ACGAGAAATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
3UTR-3UTR TCA 90 bp AGCTGCTGTGGACATTGTCAGGTCAGTTTTCTCCGTAATAGAGTTTTCGTTTATTTAAATGTGGCAACTTaGAGCAAAGAAAGATACCCA +
Preference number: 2 (lower is better)
Translates to: SCCGHCQVSFLRNRVFVYLNVAT*SKERYP
Trigger: TGGGTATCTTTCTTTGCTTCAAGTTGCCACATTTAA...ATAAACGAAAACTCTATTACGGAGAAAACTGACCTGACAATGTCCACAGCAGCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000200839.4
3UTR-3UTR GCA 90 bp CTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTTTGAAGAACTGTCTTTaGTTTCCTTTCGACTTTTTC +
Preference number: 2 (lower is better)
Translates to: LQWYRVQYISGGQLALYILKNCL*FPFDFF
Trigger: GAAAAAGTCGAAAGGAAAGCAAAGACAGTTCTTCAA...AATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
3UTR-3UTR GCA 90 bp GCAAATATCTTCCATGAAAAACTGCTGTGGACAGAAAGTAAGAAAAGTGATTGTGAGGTGCCTACGGTCTaGTTCTGTAAGAAACACAAA +
Preference number: 2 (lower is better)
Translates to: ANIFHEKLLWTESKKSDCEVPTV*FCKKHK
Trigger: TTTGTGTTTCTTACAGAAGCAGACCGTAGGCACCTC...ACAATCACTTTTCTTACTTTCTGTCCACAGCAGTTTTTCATGGAAGATATTTGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
ENSMUST00000200839.4
3UTR-3UTR TCA 90 bp GCAAATATCTTCCATGAAAAACTGCTGTGGACAGAAAGTAAGAAAAGTGATTGTAGCAAATATCTTCCATaGAAAACTGCTGTGGACAGA +
Preference number: 2 (lower is better)
Translates to: ANIFHEKLLWTESKKSDCSKYLP*KTAVDR
Trigger: TCTGTCCACAGCAGTTTTTCATGGAAGATATTTGCT...ACAATCACTTTTCTTACTTTCTGTCCACAGCAGTTTTTCATGGAAGATATTTGC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
ENSMUST00000200839.4
3UTR-3UTR GCA 90 bp GCAAATATCTTCCATGAAAAACTGCTGTGGACAGAAAGTAAGAAAAGTGATTGTACGTCATTATTTGTTTaGTCAAACGTGCACCACAGA +
Preference number: 2 (lower is better)
Translates to: ANIFHEKLLWTESKKSDCTSLFV*SNVHHR
Trigger: TCTGTGGTGCACGTTTGAGCAAACAAATAATGACGT...ACAATCACTTTTCTTACTTTCTGTCCACAGCAGTTTTTCATGGAAGATATTTGC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
3UTR-3UTR CCA 90 bp GCAAATATCTTCCATGAAAAACTGCTGTGGACAGAAAGTAAGAAAAGTGATTGTCACGTATGTACAGTCTaGCTATACATTGAACGTTAT +
Preference number: 2 (lower is better)
Translates to: ANIFHEKLLWTESKKSDCHVCTV*LYIERY
Trigger: ATAACGTTCAATGTATAGCCAGACTGTACATACGTG...ACAATCACTTTTCTTACTTTCTGTCCACAGCAGTTTTTCATGGAAGATATTTGC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
3UTR GCA 72 bp AGGTGCAACATGCCCTCATGCGAAACCACACCGTTGTaGAGACGGGAGGGCCATAAGGATGTCAACACTCCC +
Preference number: 3 (lower is better)
Translates to: RCNMPSCETTPL*RREGHKDVNTP
Trigger: GGGAGTGTTGACATCCTTATGGCCCTCCCGTCTGCACAACGGTGTGGTTTCGCATGAGGGCATGTTGCACCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
3UTR GCA 72 bp TTCTCATGCATGATCCTAAGGTGCAACATGCCCTCATaGGAAACCACACCGTTGTGCAGACGGGAGGGCCAT +
Preference number: 3 (lower is better)
Translates to: FSCMILRCNMPS*ETTPLCRREGH
Trigger: ATGGCCCTCCCGTCTGCACAACGGTGTGGTTTCGCATGAGGGCATGTTGCACCTTAGGATCATGCATGAGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
3UTR-3UTR CAA 90 bp CCCTTCCTGCTCGTGTTTCTCCACGATTGGCTTTGTCACCCGATCGTAGGAGGGTTTGGTTGTGGCAAATaGAGAGGGGGTTCTAGAGCA +
Preference number: 3 (lower is better)
Translates to: PFLLVFLHDWLCHPIVGGFGCGK*RGGSRA
Trigger: TGCTCTAGAACCCCCTCTCAATTTGCCACAACCAAA...CCCTCCTACGATCGGGTGACAAAGCCAATCGTGGAGAAACACGAGCAGGAAGGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000156865.3
ENSMUST00000200839.4
3UTR-3UTR CAA 90 bp TTGTCACCCGATCGTAGGAGGGCGGACAAGCTGCTGTGGACATTGTCAGGTCAGCTGAAGTTTGTTTGGTaGTGGCAAATTGAGAGGGGG +
Preference number: 3 (lower is better)
Translates to: LSPDRRRADKLLWTLSGQLKFVW*WQIERG
Trigger: CCCCCTCTCAATTTGCCACAACCAAACAAACTTCAG...CTGACCTGACAATGTCCACAGCAGCTTGTCCGCCCTCCTACGATCGGGTGACAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000156865.3
ENSMUST00000200839.4
3UTR GCA 72 bp TGGCTTTGTCACCCGATCGTAGGAGGGCGGACAAGCTaGTGTGGACATTGTCAGGTCAGTTTTCTCCGTAAT +
Preference number: 3 (lower is better)
Translates to: WLCHPIVGGRTS*CGHCQVSFLRN
Trigger: ATTACGGAGAAAACTGACCTGACAATGTCCACAGCAGCTTGTCCGCCCTCCTACGATCGGGTGACAAAGCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000156865.3
ENSMUST00000200839.4
3UTR-3UTR CAA 90 bp TTGTCACCCGATCGTAGGAGGGCGGACAAGCTGCTGTGGACATTGTCAGGTCAGTGCGTGACAAAATGCTaGTCACATAATCGCTCTGGT +
Preference number: 3 (lower is better)
Translates to: LSPDRRRADKLLWTLSGQCVTKC*SHNRSG
Trigger: ACCAGAGCGATTATGTGACAAGCATTTTGTCACGCA...CTGACCTGACAATGTCCACAGCAGCTTGTCCGCCCTCCTACGATCGGGTGACAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200839.4
3UTR-3UTR CAA 90 bp CCTGCTCGTGTTTCTCCACGATTGGCTTTGTCACCCGATCGTAGGAGGGCGGACGCCCCACCTTTGAGTTaGTTCTTATTGTATGTGAAT +
Preference number: 3 (lower is better)
Translates to: PARVSPRLALSPDRRRADAPPLS*FLLYVN
Trigger: ATTCACATACAATAAGAACAAACTCAAAGGTGGGGC...GTCCGCCCTCCTACGATCGGGTGACAAAGCCAATCGTGGAGAAACACGAGCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000156865.3
ENSMUST00000200839.4
3UTR-3UTR CAA 90 bp CCCTTCCTGCTCGTGTTTCTCCACGATTGGCTTTGTCACCCGATCGTAGGAGGGGCCCCACCTTTGAGTTaGTTCTTATTGTATGTGAAT +
Preference number: 3 (lower is better)
Translates to: PFLLVFLHDWLCHPIVGGAPPLS*FLLYVN
Trigger: ATTCACATACAATAAGAACAAACTCAAAGGTGGGGC...CCCTCCTACGATCGGGTGACAAAGCCAATCGTGGAGAAACACGAGCAGGAAGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000156865.3
ENSMUST00000200839.4
3UTR TCA 72 bp AGACGGGAGGGCCATAAGGATGTCAACACTCCCAGGTaGCACACCGGGAAAAGAGTTCCTTTAGTCTATTTC +
Preference number: 3 (lower is better)
Translates to: RREGHKDVNTPR*HTGKRVPLVYF
Trigger: GAAATAGACTAAAGGAACTCTTTTCCCGGTGTGTCACCTGGGAGTGTTGACATCCTTATGGCCCTCCCGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
3UTR GCA 72 bp GTCAAGGTTATCTCCCCTTTACACAGTCACAGAGTTTaGCGACAAGGGGGTCACTGTCTTATTGAGGCACTG +
Preference number: 3 (lower is better)
Translates to: VKVISPLHSHRV*RQGGHCLIEAL
Trigger: CAGTGCCTCAATAAGACAGTGACCCCCTTGTCGGCAAACTCTGTGACTGTGTAAAGGGGAGATAACCTTGAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
3UTR-3UTR CAA 90 bp TGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTTCTCGTACACAGTCACAGAGTTaGCCGACAAGGGGGTCACTG +
Preference number: 3 (lower is better)
Translates to: WYRVQYISGGQLALYISRTQSQS*PTRGSL
Trigger: CAGTGACCCCCTTGTCGGCAAACTCTGTGACTGTGT...ACGAGAAATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
3UTR-3UTR CAA 90 bp CTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTTTCGCTCTGCTAGGGTaGGGGGTAGGGAGTCAGAGT +
Preference number: 3 (lower is better)
Translates to: LQWYRVQYISGGQLALYIFALLG*GVGSQS
Trigger: ACTCTGACTCCCTACCCCCAACCCTAGCAGAGCGAA...AATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
3UTR-3UTR CAA 90 bp TTGTCACCCGATCGTAGGAGGGCGGACAAGCTGCTGTGGACATTGTCAGGTCAGAGATTAGCCCCACCTTaGAGTTTGTTCTTATTGTAT +
Preference number: 3 (lower is better)
Translates to: LSPDRRRADKLLWTLSGQRLAPP*SLFLLY
Trigger: ATACAATAAGAACAAACTCAAAGGTGGGGCTAATCT...CTGACCTGACAATGTCCACAGCAGCTTGTCCGCCCTCCTACGATCGGGTGACAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000156865.3
ENSMUST00000200839.4
3UTR-3UTR CAA 90 bp CTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTACACAGTCACAGAGTTaGCCGACAAGGGGGTCACTG +
Preference number: 3 (lower is better)
Translates to: LQWYRVQYISGGQLALYITQSQS*PTRGSL
Trigger: CAGTGACCCCCTTGTCGGCAAACTCTGTGACTGTGT...AATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
3UTR-3UTR CAA 90 bp CAACACTCCCAGGTGACACACCGGGAAAAGAGTTCCTTTAGTCTATTTCCCAACAGTCTGCATAGCCATTaGTCTCTTGTCTTCAGCAGT +
Preference number: 3 (lower is better)
Translates to: QHSQVTHREKSSFSLFPNSLHSH*SLVFSS
Trigger: ACTGCTGAAGACAAGAGACAAATGGCTATGCAGACT...GTTGGGAAATAGACTAAAGGAACTCTTTTCCCGGTGTGTCACCTGGGAGTGTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
3UTR-3UTR CAA 90 bp GGACAAGCTGCTGTGGACATTGTCAGGTCAGTTTTCTCCGTAATAGAGTTTTCGCTGAAGTTTGTTTGGTaGTGGCAAATTGAGAGGGGG +
Preference number: 3 (lower is better)
Translates to: GQAAVDIVRSVFSVIEFSLKFVW*WQIERG
Trigger: CCCCCTCTCAATTTGCCACAACCAAACAAACTTCAG...CGAAAACTCTATTACGGAGAAAACTGACCTGACAATGTCCACAGCAGCTTGTCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000156865.3
ENSMUST00000200839.4
3UTR-3UTR CAA 90 bp GAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTGGGCTTAAAGGAGTCCTTTaGACTTCACAGGCTGTAAAC +
Preference number: 3 (lower is better)
Translates to: EAGIYKGFFWSIRSARVGLKGVL*TSQAVN
Trigger: GTTTACAGCCTGTGAAGTCAAAAGGACTCCTTTAAG...CCCAACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
3UTR-3UTR CAA 90 bp GAGGAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTAGTCTGCATAGCCATTaGTCTCTTGTCTTCAGCAGT +
Preference number: 3 (lower is better)
Translates to: EEAGIYKGFFWSIRSARVSLHSH*SLVFSS
Trigger: ACTGCTGAAGACAAGAGACAAATGGCTATGCAGACT...AACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTCCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
3UTR-3UTR CAA 90 bp TGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTTCTCGTCGTGACTCCAGACATTaGAATGAAGTTTGCACCTCC +
Preference number: 3 (lower is better)
Translates to: WYRVQYISGGQLALYISRRDSRH*NEVCTS
Trigger: GGAGGTGCAAACTTCATTCAAATGTCTGGAGTCACG...ACGAGAAATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
3UTR-3UTR CAA 90 bp GGACAAGCTGCTGTGGACATTGTCAGGTCAGTTTTCTCCGTAATAGAGTTTTCGACGATGAACACCAGGTaGATGCGTGACAAAATGCTT +
Preference number: 3 (lower is better)
Translates to: GQAAVDIVRSVFSVIEFSTMNTR*MRDKML
Trigger: AAGCATTTTGTCACGCATCAACCTGGTGTTCATCGT...CGAAAACTCTATTACGGAGAAAACTGACCTGACAATGTCCACAGCAGCTTGTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000200839.4
3UTR-3UTR CAA 90 bp GCATCCACACTATCTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTAGTCTGCATAGCCATTaGTCTCTTGTCTTCAGCAGT +
Preference number: 3 (lower is better)
Translates to: ASTLSTMVQSTVYFRWTASLHSH*SLVFSS
Trigger: ACTGCTGAAGACAAGAGACAAATGGCTATGCAGACT...AGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAGATAGTGTGGATGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
3UTR-3UTR CAA 90 bp CTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTCGTGACTCCAGACATTaGAATGAAGTTTGCACCTCC +
Preference number: 3 (lower is better)
Translates to: LQWYRVQYISGGQLALYIRDSRH*NEVCTS
Trigger: GGAGGTGCAAACTTCATTCAAATGTCTGGAGTCACG...AATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
3UTR-3UTR CAA 90 bp GCAAATATCTTCCATGAAAAACTGCTGTGGACAGAAAGTAAGAAAAGTGATTGTTTCGCTCTGCTAGGGTaGGGGGTAGGGAGTCAGAGT +
Preference number: 3 (lower is better)
Translates to: ANIFHEKLLWTESKKSDCFALLG*GVGSQS
Trigger: ACTCTGACTCCCTACCCCCAACCCTAGCAGAGCGAA...ACAATCACTTTTCTTACTTTCTGTCCACAGCAGTTTTTCATGGAAGATATTTGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
3UTR CCA 72 bp ATCGACATGCATTGGCAGCATCCACACTATCTACAATaGTACAGAGTACAGTATATTTCCGGTGGACAGCTT +
Preference number: 3 (lower is better)
Translates to: IDMHWQHPHYLQ*YRVQYISGGQL
Trigger: AAGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAGATAGTGTGGATGCTGCCAATGCATGTCGAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
3UTR-3UTR CAA 90 bp GAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTGGGGATGACATAGAACTGTaGAAGAACTGTCTTTGCTTT +
Preference number: 3 (lower is better)
Translates to: EAGIYKGFFWSIRSARVGDDIEL*KNCLCF
Trigger: AAAGCAAAGACAGTTCTTCAACAGTTCTATGTCATC...CCCAACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
3UTR-3UTR CAA 90 bp GCATCCACACTATCTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTACGTCATTATTTGTTaGCTCAAACGTGCACCACAG +
Preference number: 3 (lower is better)
Translates to: ASTLSTMVQSTVYFRWTAYVIIC*LKRAPQ
Trigger: CTGTGGTGCACGTTTGAGCAAACAAATAATGACGTA...AGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAGATAGTGTGGATGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
3UTR GCA 72 bp AGAGAAACTAGATACCGCAACGTGGTAATATCGACATaGATTGGCAGCATCCACACTATCTACAATGGTACA +
Preference number: 3 (lower is better)
Translates to: RETRYRNVVIST*IGSIHTIYNGT
Trigger: TGTACCATTGTAGATAGTGTGGATGCTGCCAATGCATGTCGATATTACCACGTTGCGGTATCTAGTTTCTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
3UTR-3UTR CAA 90 bp CTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTCTTAAAGGAGTCCTTTaGACTTCACAGGCTGTAAAC +
Preference number: 3 (lower is better)
Translates to: LQWYRVQYISGGQLALYILKGVL*TSQAVN
Trigger: GTTTACAGCCTGTGAAGTCAAAAGGACTCCTTTAAG...AATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
3UTR-3UTR CAA 90 bp GGACAAGCTGCTGTGGACATTGTCAGGTCAGTTTTCTCCGTAATAGAGTTTTCGAGATTAGCCCCACCTTaGAGTTTGTTCTTATTGTAT +
Preference number: 3 (lower is better)
Translates to: GQAAVDIVRSVFSVIEFSRLAPP*SLFLLY
Trigger: ATACAATAAGAACAAACTCAAAGGTGGGGCTAATCT...CGAAAACTCTATTACGGAGAAAACTGACCTGACAATGTCCACAGCAGCTTGTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000156865.3
ENSMUST00000200839.4
3UTR CCA 72 bp CTATCTACAATGGTACAGAGTACAGTATATTTCCGGTaGACAGCTTGCACTCTACATTTCTCGTGGTACATA +
Preference number: 3 (lower is better)
Translates to: LSTMVQSTVYFR*TACTLHFSWYI
Trigger: TATGTACCACGAGAAATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAGATAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
3UTR-3UTR CAA 90 bp GCATCCACACTATCTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTGATGACATAGAACTGTaGAAGAACTGTCTTTGCTTT +
Preference number: 3 (lower is better)
Translates to: ASTLSTMVQSTVYFRWTADDIEL*KNCLCF
Trigger: AAAGCAAAGACAGTTCTTCAACAGTTCTATGTCATC...AGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAGATAGTGTGGATGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
3UTR-3UTR CAA 90 bp GCAAATATCTTCCATGAAAAACTGCTGTGGACAGAAAGTAAGAAAAGTGATTGTCATACAGTGTCAACCTaGCTGAGAGCTGAAGATGGC +
Preference number: 3 (lower is better)
Translates to: ANIFHEKLLWTESKKSDCHTVST*LRAEDG
Trigger: GCCATCTTCAGCTCTCAGCAAGGTTGACACTGTATG...ACAATCACTTTTCTTACTTTCTGTCCACAGCAGTTTTTCATGGAAGATATTTGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
3UTR-3UTR CAA 90 bp GCAAATATCTTCCATGAAAAACTGCTGTGGACAGAAAGTAAGAAAAGTGATTGTTTTCCGGTGGACAGCTaGCACTCTACATTTCTCGTG +
Preference number: 3 (lower is better)
Translates to: ANIFHEKLLWTESKKSDCFPVDS*HSTFLV
Trigger: CACGAGAAATGTAGAGTGCAAGCTGTCCACCGGAAA...ACAATCACTTTTCTTACTTTCTGTCCACAGCAGTTTTTCATGGAAGATATTTGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
3UTR-3UTR CAA 90 bp GTCAGTTTTCTCCGTAATAGAGTTTTCGTTTATTCTGTCAATGAGCATGTCTTCCTTAAAGGAGTCCTTTaGACTTCACAGGCTGTAAAC +
Preference number: 3 (lower is better)
Translates to: VSFLRNRVFVYSVNEHVFLKGVL*TSQAVN
Trigger: GTTTACAGCCTGTGAAGTCAAAAGGACTCCTTTAAG...GAAGACATGCTCATTGACAGAATAAACGAAAACTCTATTACGGAGAAAACTGAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000200839.4
3UTR-3UTR CAA 90 bp ATGTACAGGCTTTCCTCATACTTAGGCTGTAGTTCAACATTTCTGGAATCAACTCTTAAATGTGGCAACTaGAAGCAAAGAAAGATACCC +
Preference number: 3 (lower is better)
Translates to: MYRLSSYLGCSSTFLESTLKCGN*KQRKIP
Trigger: GGGTATCTTTCTTTGCTTCAAGTTGCCACATTTAAG...AGTTGATTCCAGAAATGTTGAACTACAGCCTAAGTATGAGGAAAGCCTGTACAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200839.4
3UTR-3UTR CAA 90 bp GCAAATATCTTCCATGAAAAACTGCTGTGGACAGAAAGTAAGAAAAGTGATTGTGATGACATAGAACTGTaGAAGAACTGTCTTTGCTTT +
Preference number: 3 (lower is better)
Translates to: ANIFHEKLLWTESKKSDCDDIEL*KNCLCF
Trigger: AAAGCAAAGACAGTTCTTCAACAGTTCTATGTCATC...ACAATCACTTTTCTTACTTTCTGTCCACAGCAGTTTTTCATGGAAGATATTTGC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
3UTR-3UTR CAA 90 bp GCAAATATCTTCCATGAAAAACTGCTGTGGACAGAAAGTAAGAAAAGTGATTGTCAGTCTGGCTATACATaGAACGTTATCCACTTAAAT +
Preference number: 3 (lower is better)
Translates to: ANIFHEKLLWTESKKSDCQSGYT*NVIHLN
Trigger: ATTTAAGTGGATAACGTTCAATGTATAGCCAGACTG...ACAATCACTTTTCTTACTTTCTGTCCACAGCAGTTTTTCATGGAAGATATTTGC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
3UTR CAA 72 bp CCTTCCCTTCCTGCTCGTGTTTCTCCACGATTGGCTTaGTCACCCGATCGTAGGAGGGCGGACAAGCTGCTG +
Preference number: 4 (lower is better)
Translates to: PSLPARVSPRLA*SPDRRRADKLL
Trigger: CAGCAGCTTGTCCGCCCTCCTACGATCGGGTGACAAAGCCAATCGTGGAGAAACACGAGCAGGAAGGGAAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000156865.3
ENSMUST00000200839.4
CDS-3UTR GCA 90 bp TTGTCACCCGATCGTAGGAGGGCGGACAAGCTGCTGTGGACATTGTCAGGTCAGACTTCTCCACACTGCTaGCCGTCCCTATGCCACTTG +
Preference number: 4 (lower is better)
Translates to: LSPDRRRADKLLWTLSGQTSPHC*PSLCHL
Trigger: CAAGTGGCATAGGGACGGGCAGCAGTGTGGAGAAGT...CTGACCTGACAATGTCCACAGCAGCTTGTCCGCCCTCCTACGATCGGGTGACAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156865.3
CDS-3UTR TCA 90 bp CCACGATTGGCTTTGTCACCCGATCGTAGGAGGGCGGACAAGCTGCTGTGGACATACTGTGCTTCCCTCTaGGGAGCTACTGCTTTCGTT +
Preference number: 4 (lower is better)
Translates to: PRLALSPDRRRADKLLWTYCASL*GATAFV
Trigger: AACGAAAGCAGTAGCTCCTCAGAGGGAAGCACAGTA...TGTCCACAGCAGCTTGTCCGCCCTCCTACGATCGGGTGACAAAGCCAATCGTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000156865.3
ENSMUST00000200839.4
CDS-3UTR GCA 90 bp GTGTTTCTCCACGATTGGCTTTGTCACCCGATCGTAGGAGGGCGGACAAGCTGCTGCTGCCCGTCCCTATaGCACTTGTGGTTCCATTCA +
Preference number: 4 (lower is better)
Translates to: VFLHDWLCHPIVGGRTSCCCPSL*HLWFHS
Trigger: TGAATGGAACCACAAGTGGCATAGGGACGGGCAGCA...GCAGCTTGTCCGCCCTCCTACGATCGGGTGACAAAGCCAATCGTGGAGAAACAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156865.3
CDS-3UTR CCA 90 bp CCTGCTCGTGTTTCTCCACGATTGGCTTTGTCACCCGATCGTAGGAGGGCGGACCAGCACTTGAATCTCTaGACACAGCCTTCAGTGAAG +
Preference number: 4 (lower is better)
Translates to: PARVSPRLALSPDRRRADQHLNL*TQPSVK
Trigger: CTTCACTGAAGGCTGTGTCCAGAGATTCAAGTGCTG...GTCCGCCCTCCTACGATCGGGTGACAAAGCCAATCGTGGAGAAACACGAGCAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000156865.3
ENSMUST00000200839.4
3UTR CAA 72 bp CTAAGGTGCAACATGCCCTCATGCGAAACCACACCGTaGTGCAGACGGGAGGGCCATAAGGATGTCAACACT +
Preference number: 4 (lower is better)
Translates to: LRCNMPSCETTP*CRREGHKDVNT
Trigger: AGTGTTGACATCCTTATGGCCCTCCCGTCTGCACAACGGTGTGGTTTCGCATGAGGGCATGTTGCACCTTAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR TCA 90 bp CCCTTCCTGCTCGTGTTTCTCCACGATTGGCTTTGTCACCCGATCGTAGGAGGGTTTCTTCTGGTTCAATaGCAGGCTGTTCCTCTGCAG +
Preference number: 4 (lower is better)
Translates to: PFLLVFLHDWLCHPIVGGFLLVQ*QAVPLQ
Trigger: CTGCAGAGGAACAGCCTGTCATTGAACCAGAAGAAA...CCCTCCTACGATCGGGTGACAAAGCCAATCGTGGAGAAACACGAGCAGGAAGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000156865.3
ENSMUST00000200839.4
CDS-3UTR TCA 90 bp CCCTTCCTGCTCGTGTTTCTCCACGATTGGCTTTGTCACCCGATCGTAGGAGGGTCTTCCACGCTGATTTaGCAGCACTTGAATCTCTGG +
Preference number: 4 (lower is better)
Translates to: PFLLVFLHDWLCHPIVGGSSTLI*QHLNLW
Trigger: CCAGAGATTCAAGTGCTGTCAAATCAGCGTGGAAGA...CCCTCCTACGATCGGGTGACAAAGCCAATCGTGGAGAAACACGAGCAGGAAGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000156865.3
ENSMUST00000200839.4
CDS-3UTR GCA 90 bp CAACACTCCCAGGTGACACACCGGGAAAAGAGTTCCTTTAGTCTATTTCCCAACGTTGTAGCCGCTGCCTaGTGTGCAGCCTCTTGCTGC +
Preference number: 4 (lower is better)
Translates to: QHSQVTHREKSSFSLFPNVVAAA*CAASCC
Trigger: GCAGCAAGAGGCTGCACAGCAGGCAGCGGCTACAAC...GTTGGGAAATAGACTAAAGGAACTCTTTTCCCGGTGTGTCACCTGGGAGTGTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR TCA 90 bp GAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTGGGTGGCGATGTGGGAACTaGGGGTCCACCAACCAAGGA +
Preference number: 4 (lower is better)
Translates to: EAGIYKGFFWSIRSARVGWRCGN*GSTNQG
Trigger: TCCTTGGTTGGTGGACCCTCAGTTCCCACATCGCCA...CCCAACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR GCA 90 bp GAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTGGGAGCCGCTGCCTGCTGTaGAGCCTCTTGCTGCTTCTT +
Preference number: 4 (lower is better)
Translates to: EAGIYKGFFWSIRSARVGSRCLL*SLLLLL
Trigger: AAGAAGCAGCAAGAGGCTGCACAGCAGGCAGCGGCT...CCCAACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR GCA 90 bp CAACACTCCCAGGTGACACACCGGGAAAAGAGTTCCTTTAGTCTATTTCCCAACGCATTCGGGAGGACCTaGTGGTCTGGCTCAGGTTAC +
Preference number: 4 (lower is better)
Translates to: QHSQVTHREKSSFSLFPNAFGRT*WSGSGY
Trigger: GTAACCTGAGCCAGACCAGCAGGTCCTCCCGAATGC...GTTGGGAAATAGACTAAAGGAACTCTTTTCCCGGTGTGTCACCTGGGAGTGTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR GCA 90 bp GAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTGGGACACCAGAGTCAGGTTaGCCAGTGCTCCCACCGAGT +
Preference number: 4 (lower is better)
Translates to: EAGIYKGFFWSIRSARVGTPESG*PVLPPS
Trigger: ACTCGGTGGGAGCACTGGGCAACCTGACTCTGGTGT...CCCAACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR GCA 90 bp CAACACTCCCAGGTGACACACCGGGAAAAGAGTTCCTTTAGTCTATTTCCCAACACACCAGAGTCAGGTTaGCCAGTGCTCCCACCGAGT +
Preference number: 4 (lower is better)
Translates to: QHSQVTHREKSSFSLFPNTPESG*PVLPPS
Trigger: ACTCGGTGGGAGCACTGGGCAACCTGACTCTGGTGT...GTTGGGAAATAGACTAAAGGAACTCTTTTCCCGGTGTGTCACCTGGGAGTGTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CCA 90 bp GAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTGGGCCTCAAGGGAAGCGTTaGTGGGAGGCCACTGTACAC +
Preference number: 4 (lower is better)
Translates to: EAGIYKGFFWSIRSARVGPQGKR*WEATVH
Trigger: GTGTACAGTGGCCTCCCACCAACGCTTCCCTTGAGG...CCCAACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR TCA 90 bp GAGGAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTTGGCGATGTGGGAACTaGGGGTCCACCAACCAAGGA +
Preference number: 4 (lower is better)
Translates to: EEAGIYKGFFWSIRSARVWRCGN*GSTNQG
Trigger: TCCTTGGTTGGTGGACCCTCAGTTCCCACATCGCCA...AACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR GCA 90 bp TGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTTCTCGTGTTGTAGCCGCTGCCTaGTGTGCAGCCTCTTGCTGC +
Preference number: 4 (lower is better)
Translates to: WYRVQYISGGQLALYISRVVAAA*CAASCC
Trigger: GCAGCAAGAGGCTGCACAGCAGGCAGCGGCTACAAC...ACGAGAAATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR GCA 90 bp GCATCCACACTATCTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTAGCTATCTGAGAGCCTaGCTGCTGCACTGGGCTCCC +
Preference number: 4 (lower is better)
Translates to: ASTLSTMVQSTVYFRWTASYLRA*LLHWAP
Trigger: GGGAGCCCAGTGCAGCAGGCAGGCTCTCAGATAGCT...AGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAGATAGTGTGGATGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR GCA 90 bp GAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTGGGGCTGGCTATGCTCATTaGCCTTTGCCTCTGGGAAGG +
Preference number: 4 (lower is better)
Translates to: EAGIYKGFFWSIRSARVGAGYAH*PLPLGR
Trigger: CCTTCCCAGAGGCAAAGGGCAATGAGCATAGCCAGC...CCCAACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CCA 90 bp GAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTGGGCTGCACTGGGCTCCCTaGAATGTTCTGAGGCTGTTG +
Preference number: 4 (lower is better)
Translates to: EAGIYKGFFWSIRSARVGLHWAP*NVLRLL
Trigger: CAACAGCCTCAGAACATTCCAGGGAGCCCAGTGCAG...CCCAACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CCA 90 bp GAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTGGGTTCGGGAGGACCTGCTaGTCTGGCTCAGGTTACTGT +
Preference number: 4 (lower is better)
Translates to: EAGIYKGFFWSIRSARVGFGRTC*SGSGYC
Trigger: ACAGTAACCTGAGCCAGACCAGCAGGTCCTCCCGAA...CCCAACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CCA 90 bp GAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTGGGGTCCAACTGGCGATGTaGGAACTGAGGGTCCACCAA +
Preference number: 4 (lower is better)
Translates to: EAGIYKGFFWSIRSARVGVQLAM*ELRVHQ
Trigger: TTGGTGGACCCTCAGTTCCCACATCGCCAGTTGGAC...CCCAACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CCA 90 bp CAACACTCCCAGGTGACACACCGGGAAAAGAGTTCCTTTAGTCTATTTCCCAACGTCCAACTGGCGATGTaGGAACTGAGGGTCCACCAA +
Preference number: 4 (lower is better)
Translates to: QHSQVTHREKSSFSLFPNVQLAM*ELRVHQ
Trigger: TTGGTGGACCCTCAGTTCCCACATCGCCAGTTGGAC...GTTGGGAAATAGACTAAAGGAACTCTTTTCCCGGTGTGTCACCTGGGAGTGTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR TCA 90 bp GGGCGGACAAGCTGCTGTGGACATTGTCAGGTCAGTTTTCTCCGTAATAGAGTTTACTGTGCTTCCCTCTaGGGAGCTACTGCTTTCGTT +
Preference number: 4 (lower is better)
Translates to: GRTSCCGHCQVSFLRNRVYCASL*GATAFV
Trigger: AACGAAAGCAGTAGCTCCTCAGAGGGAAGCACAGTA...AACTCTATTACGGAGAAAACTGACCTGACAATGTCCACAGCAGCTTGTCCGCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000156865.3
ENSMUST00000200839.4
CDS-3UTR TCA 90 bp CCTGCTCGTGTTTCTCCACGATTGGCTTTGTCACCCGATCGTAGGAGGGCGGACTTTAGGCAATCAGAATaGTTATTGACTTCGCTGATC +
Preference number: 4 (lower is better)
Translates to: PARVSPRLALSPDRRRADFRQSE*LLTSLI
Trigger: GATCAGCGAAGTCAATAATCATTCTGATTGCCTAAA...GTCCGCCCTCCTACGATCGGGTGACAAAGCCAATCGTGGAGAAACACGAGCAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156865.3
CDS-3UTR GCA 90 bp CAACACTCCCAGGTGACACACCGGGAAAAGAGTTCCTTTAGTCTATTTCCCAACTTGCCCATGAAGAGCTaGAACCCGATGAGTGCGAAC +
Preference number: 4 (lower is better)
Translates to: QHSQVTHREKSSFSLFPNLPMKS*NPMSAN
Trigger: GTTCGCACTCATCGGGTTGCAGCTCTTCATGGGCAA...GTTGGGAAATAGACTAAAGGAACTCTTTTCCCGGTGTGTCACCTGGGAGTGTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR GCA 90 bp TGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTTCTCGTAGCCGCTGCCTGCTGTaGAGCCTCTTGCTGCTTCTT +
Preference number: 4 (lower is better)
Translates to: WYRVQYISGGQLALYISRSRCLL*SLLLLL
Trigger: AAGAAGCAGCAAGAGGCTGCACAGCAGGCAGCGGCT...ACGAGAAATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR GCA 90 bp CTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTAGCTATCTGAGAGCCTaGCTGCTGCACTGGGCTCCC +
Preference number: 4 (lower is better)
Translates to: LQWYRVQYISGGQLALYISYLRA*LLHWAP
Trigger: GGGAGCCCAGTGCAGCAGGCAGGCTCTCAGATAGCT...AATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR GCA 90 bp TGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTTCTCGTGCATTCGGGAGGACCTaGTGGTCTGGCTCAGGTTAC +
Preference number: 4 (lower is better)
Translates to: WYRVQYISGGQLALYISRAFGRT*WSGSGY
Trigger: GTAACCTGAGCCAGACCAGCAGGTCCTCCCGAATGC...ACGAGAAATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR GCA 90 bp TGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTTCTCGTACACCAGAGTCAGGTTaGCCAGTGCTCCCACCGAGT +
Preference number: 4 (lower is better)
Translates to: WYRVQYISGGQLALYISRTPESG*PVLPPS
Trigger: ACTCGGTGGGAGCACTGGGCAACCTGACTCTGGTGT...ACGAGAAATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR GCA 90 bp CAACACTCCCAGGTGACACACCGGGAAAAGAGTTCCTTTAGTCTATTTCCCAACTGCTGCCCGTCCCTATaGCACTTGTGGTTCCATTCA +
Preference number: 4 (lower is better)
Translates to: QHSQVTHREKSSFSLFPNCCPSL*HLWFHS
Trigger: TGAATGGAACCACAAGTGGCATAGGGACGGGCAGCA...GTTGGGAAATAGACTAAAGGAACTCTTTTCCCGGTGTGTCACCTGGGAGTGTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR GCA 90 bp TGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTTCTCGTGGAGGGCGGACAAGCTaGTGTGGACATTGTCAGGTC +
Preference number: 4 (lower is better)
Translates to: WYRVQYISGGQLALYISRGGRTS*CGHCQV
Trigger: GACCTGACAATGTCCACAGCAGCTTGTCCGCCCTCC...ACGAGAAATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CCA 90 bp TGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTTCTCGTCCTCAAGGGAAGCGTTaGTGGGAGGCCACTGTACAC +
Preference number: 4 (lower is better)
Translates to: WYRVQYISGGQLALYISRPQGKR*WEATVH
Trigger: GTGTACAGTGGCCTCCCACCAACGCTTCCCTTGAGG...ACGAGAAATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CCA 90 bp GCATCCACACTATCTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTCCTCAAGGGAAGCGTTaGTGGGAGGCCACTGTACAC +
Preference number: 4 (lower is better)
Translates to: ASTLSTMVQSTVYFRWTAPQGKR*WEATVH
Trigger: GTGTACAGTGGCCTCCCACCAACGCTTCCCTTGAGG...AGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAGATAGTGTGGATGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CCA 90 bp CAACACTCCCAGGTGACACACCGGGAAAAGAGTTCCTTTAGTCTATTTCCCAACTCTGCTATTGCGTCTTaGGGAGAACAGGGAACCACG +
Preference number: 4 (lower is better)
Translates to: QHSQVTHREKSSFSLFPNSAIAS*GEQGTT
Trigger: CGTGGTTCCCTGTTCTCCCCAAGACGCAATAGCAGA...GTTGGGAAATAGACTAAAGGAACTCTTTTCCCGGTGTGTCACCTGGGAGTGTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CCA 90 bp CAACACTCCCAGGTGACACACCGGGAAAAGAGTTCCTTTAGTCTATTTCCCAACCATCTTCCCATTGGCTaGAAACACCGCCAGCATTCG +
Preference number: 4 (lower is better)
Translates to: QHSQVTHREKSSFSLFPNHLPIG*KHRQHS
Trigger: CGAATGCTGGCGGTGTTTCCAGCCAATGGGAAGATG...GTTGGGAAATAGACTAAAGGAACTCTTTTCCCGGTGTGTCACCTGGGAGTGTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CCA 90 bp GAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTGGGTGTGCATCTTCCCATTaGCTGGAAACACCGCCAGCA +
Preference number: 4 (lower is better)
Translates to: EAGIYKGFFWSIRSARVGCASSH*LETPPA
Trigger: TGCTGGCGGTGTTTCCAGCCAATGGGAAGATGCACA...CCCAACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CCA 90 bp CAACACTCCCAGGTGACACACCGGGAAAAGAGTTCCTTTAGTCTATTTCCCAACTGTGCATCTTCCCATTaGCTGGAAACACCGCCAGCA +
Preference number: 4 (lower is better)
Translates to: QHSQVTHREKSSFSLFPNCASSH*LETPPA
Trigger: TGCTGGCGGTGTTTCCAGCCAATGGGAAGATGCACA...GTTGGGAAATAGACTAAAGGAACTCTTTTCCCGGTGTGTCACCTGGGAGTGTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CCA 90 bp GAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTGGGGTTCATGTGCCAACGTaGGAGTTTGCAGTCAGTGGC +
Preference number: 4 (lower is better)
Translates to: EAGIYKGFFWSIRSARVGVHVPT*EFAVSG
Trigger: GCCACTGACTGCAAACTCCCACGTTGGCACATGAAC...CCCAACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CCA 90 bp CCACGATTGGCTTTGTCACCCGATCGTAGGAGGGCGGACAAGCTGCTGTGGACAGTAGTTCAACATTTCTaGAATCAACTGCAGCATACA +
Preference number: 4 (lower is better)
Translates to: PRLALSPDRRRADKLLWTVVQHF*NQLQHT
Trigger: TGTATGCTGCAGTTGATTCCAGAAATGTTGAACTAC...TGTCCACAGCAGCTTGTCCGCCCTCCTACGATCGGGTGACAAAGCCAATCGTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156865.3
CDS-3UTR CCA 90 bp GAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTGGGAGTGGTTGTTCCCTCTaGCAGAAGCTGTCCAACTGG +
Preference number: 4 (lower is better)
Translates to: EAGIYKGFFWSIRSARVGSGCSL*QKLSNW
Trigger: CCAGTTGGACAGCTTCTGCCAGAGGGAACAACCACT...CCCAACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077489.12
ENSMUST00000112371.9
CDS-3UTR TCA 90 bp CTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTCTCCCTGGAATGTTCTaGGGCTGTTGTAGCCGCTGC +
Preference number: 4 (lower is better)
Translates to: LQWYRVQYISGGQLALYILPGMF*GCCSRC
Trigger: GCAGCGGCTACAACAGCCTCAGAACATTCCAGGGAG...AATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR TCA 90 bp CAACACTCCCAGGTGACACACCGGGAAAAGAGTTCCTTTAGTCTATTTCCCAACTACTGTGCTTCCCTCTaGGGAGCTACTGCTTTCGTT +
Preference number: 4 (lower is better)
Translates to: QHSQVTHREKSSFSLFPNYCASL*GATAFV
Trigger: AACGAAAGCAGTAGCTCCTCAGAGGGAAGCACAGTA...GTTGGGAAATAGACTAAAGGAACTCTTTTCCCGGTGTGTCACCTGGGAGTGTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR TCA 90 bp GGGCGGACAAGCTGCTGTGGACATTGTCAGGTCAGTTTTCTCCGTAATAGAGTTTTTCTTCTGGTTCAATaGCAGGCTGTTCCTCTGCAG +
Preference number: 4 (lower is better)
Translates to: GRTSCCGHCQVSFLRNRVFLLVQ*QAVPLQ
Trigger: CTGCAGAGGAACAGCCTGTCATTGAACCAGAAGAAA...AACTCTATTACGGAGAAAACTGACCTGACAATGTCCACAGCAGCTTGTCCGCCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000156865.3
ENSMUST00000200839.4
CDS-3UTR TCA 90 bp CAACACTCCCAGGTGACACACCGGGAAAAGAGTTCCTTTAGTCTATTTCCCAACTTGGTTGTGGCAAATTaGGAGGGGGTTCTAGAGCAG +
Preference number: 4 (lower is better)
Translates to: QHSQVTHREKSSFSLFPNLVVAN*EGVLEQ
Trigger: CTGCTCTAGAACCCCCTCTCAATTTGCCACAACCAA...GTTGGGAAATAGACTAAAGGAACTCTTTTCCCGGTGTGTCACCTGGGAGTGTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR TCA 90 bp CTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTTGGCGATGTGGGAACTaGGGGTCCACCAACCAAGGA +
Preference number: 4 (lower is better)
Translates to: LQWYRVQYISGGQLALYIWRCGN*GSTNQG
Trigger: TCCTTGGTTGGTGGACCCTCAGTTCCCACATCGCCA...AATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR GCA 90 bp CAACACTCCCAGGTGACACACCGGGAAAAGAGTTCCTTTAGTCTATTTCCCAACTGCTGTGCAGCCTCTTaGTGCTTCTTAAGTTGCTCC +
Preference number: 4 (lower is better)
Translates to: QHSQVTHREKSSFSLFPNCCAAS*CFLSCS
Trigger: GGAGCAACTTAAGAAGCAGCAAGAGGCTGCACAGCA...GTTGGGAAATAGACTAAAGGAACTCTTTTCCCGGTGTGTCACCTGGGAGTGTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR GCA 90 bp CTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTAGCCGCTGCCTGCTGTaGAGCCTCTTGCTGCTTCTT +
Preference number: 4 (lower is better)
Translates to: LQWYRVQYISGGQLALYISRCLL*SLLLLL
Trigger: AAGAAGCAGCAAGAGGCTGCACAGCAGGCAGCGGCT...AATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR GCA 90 bp CTAAACAAAGTGCAGGAGGAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTGTTGTAGCCGCTGCCTaGTGTGCAGCCTCTTGCTGC +
Preference number: 4 (lower is better)
Translates to: LNKVQEEAGIYKGFFWSIVVAAA*CAASCC
Trigger: GCAGCAAGAGGCTGCACAGCAGGCAGCGGCTACAAC...AATTGACCAAAAGAACCCTTTATAAATCCCCGCTTCCTCCTGCACTTTGTTTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR GCA 90 bp CTAAACAAAGTGCAGGAGGAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTAGCTATCTGAGAGCCTaGCTGCTGCACTGGGCTCCC +
Preference number: 4 (lower is better)
Translates to: LNKVQEEAGIYKGFFWSISYLRA*LLHWAP
Trigger: GGGAGCCCAGTGCAGCAGGCAGGCTCTCAGATAGCT...AATTGACCAAAAGAACCCTTTATAAATCCCCGCTTCCTCCTGCACTTTGTTTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR GCA 90 bp TGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTTCTCGTGGCTCAGGTTACTGTTaGGTCGCTCTCCGTGTCTTC +
Preference number: 4 (lower is better)
Translates to: WYRVQYISGGQLALYISRGSGYC*VALRVF
Trigger: GAAGACACGGAGAGCGACGCAACAGTAACCTGAGCC...ACGAGAAATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR GCA 90 bp CTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTGCATTCGGGAGGACCTaGTGGTCTGGCTCAGGTTAC +
Preference number: 4 (lower is better)
Translates to: LQWYRVQYISGGQLALYIAFGRT*WSGSGY
Trigger: GTAACCTGAGCCAGACCAGCAGGTCCTCCCGAATGC...AATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR GCA 90 bp GCATCCACACTATCTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTGCTGGCTATGCTCATTaGCCTTTGCCTCTGGGAAGG +
Preference number: 4 (lower is better)
Translates to: ASTLSTMVQSTVYFRWTAAGYAH*PLPLGR
Trigger: CCTTCCCAGAGGCAAAGGGCAATGAGCATAGCCAGC...AGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAGATAGTGTGGATGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CCA 90 bp GCATCCACACTATCTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTCTGCACTGGGCTCCCTaGAATGTTCTGAGGCTGTTG +
Preference number: 4 (lower is better)
Translates to: ASTLSTMVQSTVYFRWTALHWAP*NVLRLL
Trigger: CAACAGCCTCAGAACATTCCAGGGAGCCCAGTGCAG...AGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAGATAGTGTGGATGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CCA 90 bp GAGGAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTTCTGCTATTGCGTCTTaGGGAGAACAGGGAACCACG +
Preference number: 4 (lower is better)
Translates to: EEAGIYKGFFWSIRSARVSAIAS*GEQGTT
Trigger: CGTGGTTCCCTGTTCTCCCCAAGACGCAATAGCAGA...AACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTCCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CCA 90 bp TGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTTCTCGTTTCGGGAGGACCTGCTaGTCTGGCTCAGGTTACTGT +
Preference number: 4 (lower is better)
Translates to: WYRVQYISGGQLALYISRFGRTC*SGSGYC
Trigger: ACAGTAACCTGAGCCAGACCAGCAGGTCCTCCCGAA...ACGAGAAATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CCA 90 bp CAACACTCCCAGGTGACACACCGGGAAAAGAGTTCCTTTAGTCTATTTCCCAACGGCCAGATCAACAAATaGGTCCATCACCACCAGGTT +
Preference number: 4 (lower is better)
Translates to: QHSQVTHREKSSFSLFPNGQINK*VHHHQV
Trigger: AACCTGGTGGTGATGGACCCATTTGTTGATCTGGCC...GTTGGGAAATAGACTAAAGGAACTCTTTTCCCGGTGTGTCACCTGGGAGTGTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR TCA 90 bp GAGGAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTTACTGTGCTTCCCTCTaGGGAGCTACTGCTTTCGTT +
Preference number: 4 (lower is better)
Translates to: EEAGIYKGFFWSIRSARVYCASL*GATAFV
Trigger: AACGAAAGCAGTAGCTCCTCAGAGGGAAGCACAGTA...AACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTCCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR TCA 90 bp GAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTGGGTTTCTTCTGGTTCAATaGCAGGCTGTTCCTCTGCAG +
Preference number: 4 (lower is better)
Translates to: EAGIYKGFFWSIRSARVGFLLVQ*QAVPLQ
Trigger: CTGCAGAGGAACAGCCTGTCATTGAACCAGAAGAAA...CCCAACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR TCA 90 bp AGCTGCTGTGGACATTGTCAGGTCAGTTTTCTCCGTAATAGAGTTTTCGTTTATCCCATAATAAAGGGCTaGGGGGAGGAACCACCGCTC +
Preference number: 4 (lower is better)
Translates to: SCCGHCQVSFLRNRVFVYPIIKG*GEEPPL
Trigger: GAGCGGTGGTTCCTCCCCTCAGCCCTTTATTATGGG...ATAAACGAAAACTCTATTACGGAGAAAACTGACCTGACAATGTCCACAGCAGCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000200839.4
CDS-3UTR GCA 90 bp TGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTTCTCGTTTGCCCATGAAGAGCTaGAACCCGATGAGTGCGAAC +
Preference number: 4 (lower is better)
Translates to: WYRVQYISGGQLALYISRLPMKS*NPMSAN
Trigger: GTTCGCACTCATCGGGTTGCAGCTCTTCATGGGCAA...ACGAGAAATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR GCA 90 bp GAGGAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTTGCTGTGCAGCCTCTTaGTGCTTCTTAAGTTGCTCC +
Preference number: 4 (lower is better)
Translates to: EEAGIYKGFFWSIRSARVCCAAS*CFLSCS
Trigger: GGAGCAACTTAAGAAGCAGCAAGAGGCTGCACAGCA...AACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTCCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR GCA 90 bp CAACACTCCCAGGTGACACACCGGGAAAAGAGTTCCTTTAGTCTATTTCCCAACATGCTCATTGCCCTTTaGCTCTGGGAAGGATCTTCT +
Preference number: 4 (lower is better)
Translates to: QHSQVTHREKSSFSLFPNMLIAL*LWEGSS
Trigger: AGAAGATCCTTCCCAGAGGCAAAGGGCAATGAGCAT...GTTGGGAAATAGACTAAAGGAACTCTTTTCCCGGTGTGTCACCTGGGAGTGTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR GCA 90 bp CTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTGCTGGCTATGCTCATTaGCCTTTGCCTCTGGGAAGG +
Preference number: 4 (lower is better)
Translates to: LQWYRVQYISGGQLALYIAGYAH*PLPLGR
Trigger: CCTTCCCAGAGGCAAAGGGCAATGAGCATAGCCAGC...AATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR GCA 90 bp CAACACTCCCAGGTGACACACCGGGAAAAGAGTTCCTTTAGTCTATTTCCCAACTCATCCTTCCCTTCCTaGTCGTGTTTCTCCACGATT +
Preference number: 4 (lower is better)
Translates to: QHSQVTHREKSSFSLFPNSSFPS*SCFSTI
Trigger: AATCGTGGAGAAACACGAGCAGGAAGGGAAGGATGA...GTTGGGAAATAGACTAAAGGAACTCTTTTCCCGGTGTGTCACCTGGGAGTGTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CCA 90 bp TGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTTCTCGTTCTGCTATTGCGTCTTaGGGAGAACAGGGAACCACG +
Preference number: 4 (lower is better)
Translates to: WYRVQYISGGQLALYISRSAIAS*GEQGTT
Trigger: CGTGGTTCCCTGTTCTCCCCAAGACGCAATAGCAGA...ACGAGAAATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CCA 90 bp CTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTTTCGGGAGGACCTGCTaGTCTGGCTCAGGTTACTGT +
Preference number: 4 (lower is better)
Translates to: LQWYRVQYISGGQLALYIFGRTC*SGSGYC
Trigger: ACAGTAACCTGAGCCAGACCAGCAGGTCCTCCCGAA...AATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CCA 90 bp GAGGAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTGGCCAGATCAACAAATaGGTCCATCACCACCAGGTT +
Preference number: 4 (lower is better)
Translates to: EEAGIYKGFFWSIRSARVGQINK*VHHHQV
Trigger: AACCTGGTGGTGATGGACCCATTTGTTGATCTGGCC...AACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTCCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CCA 90 bp GCATCCACACTATCTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTGTTCATGTGCCAACGTaGGAGTTTGCAGTCAGTGGC +
Preference number: 4 (lower is better)
Translates to: ASTLSTMVQSTVYFRWTAVHVPT*EFAVSG
Trigger: GCCACTGACTGCAAACTCCCACGTTGGCACATGAAC...AGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAGATAGTGTGGATGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CCA 90 bp TGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTTCTCGTGTTCATGTGCCAACGTaGGAGTTTGCAGTCAGTGGC +
Preference number: 4 (lower is better)
Translates to: WYRVQYISGGQLALYISRVHVPT*EFAVSG
Trigger: GCCACTGACTGCAAACTCCCACGTTGGCACATGAAC...ACGAGAAATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CCA 90 bp GAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTGGGCAGCACTTGAATCTCTaGACACAGCCTTCAGTGAAG +
Preference number: 4 (lower is better)
Translates to: EAGIYKGFFWSIRSARVGQHLNL*TQPSVK
Trigger: CTTCACTGAAGGCTGTGTCCAGAGATTCAAGTGCTG...CCCAACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CCA 90 bp CAACACTCCCAGGTGACACACCGGGAAAAGAGTTCCTTTAGTCTATTTCCCAACGTGTTTCTCCACGATTaGCTTTGTCACCCGATCGTA +
Preference number: 4 (lower is better)
Translates to: QHSQVTHREKSSFSLFPNVFLHD*LCHPIV
Trigger: TACGATCGGGTGACAAAGCCAATCGTGGAGAAACAC...GTTGGGAAATAGACTAAAGGAACTCTTTTCCCGGTGTGTCACCTGGGAGTGTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CCA 90 bp GCATCCACACTATCTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTAGTGGTTGTTCCCTCTaGCAGAAGCTGTCCAACTGG +
Preference number: 4 (lower is better)
Translates to: ASTLSTMVQSTVYFRWTASGCSL*QKLSNW
Trigger: CCAGTTGGACAGCTTCTGCCAGAGGGAACAACCACT...AGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAGATAGTGTGGATGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077489.12
ENSMUST00000112371.9
CDS-3UTR TCA 90 bp GAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTGGGTGCTCCAACATCTGCTaGAATTCTGCCTCTTTCTGT +
Preference number: 4 (lower is better)
Translates to: EAGIYKGFFWSIRSARVGCSNIC*NSASFC
Trigger: ACAGAAAGAGGCAGAATTTCAGCAGATGTTGGAGCA...CCCAACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR TCA 90 bp GAGGAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTTTTCTTCTGGTTCAATaGCAGGCTGTTCCTCTGCAG +
Preference number: 4 (lower is better)
Translates to: EEAGIYKGFFWSIRSARVFLLVQ*QAVPLQ
Trigger: CTGCAGAGGAACAGCCTGTCATTGAACCAGAAGAAA...AACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTCCTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR TCA 90 bp CAACACTCCCAGGTGACACACCGGGAAAAGAGTTCCTTTAGTCTATTTCCCAACTGTTCCATCCAATGGTaGAATAATAATGGCGGAGCG +
Preference number: 4 (lower is better)
Translates to: QHSQVTHREKSSFSLFPNCSIQW*NNNGGA
Trigger: CGCTCCGCCATTATTATTTCACCATTGGATGGAACA...GTTGGGAAATAGACTAAAGGAACTCTTTTCCCGGTGTGTCACCTGGGAGTGTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR GCA 90 bp GAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTGGGCTTAGCCTTCTCTTCTaGAATGCGCCTTTCAATAGC +
Preference number: 4 (lower is better)
Translates to: EAGIYKGFFWSIRSARVGLSLLF*NAPFNS
Trigger: GCTATTGAAAGGCGCATTGCAGAAGAGAAGGCTAAG...CCCAACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR GCA 90 bp CAACACTCCCAGGTGACACACCGGGAAAAGAGTTCCTTTAGTCTATTTCCCAACCTTAGCCTTCTCTTCTaGAATGCGCCTTTCAATAGC +
Preference number: 4 (lower is better)
Translates to: QHSQVTHREKSSFSLFPNLSLLF*NAPFNS
Trigger: GCTATTGAAAGGCGCATTGCAGAAGAGAAGGCTAAG...GTTGGGAAATAGACTAAAGGAACTCTTTTCCCGGTGTGTCACCTGGGAGTGTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR GCA 90 bp CAACACTCCCAGGTGACACACCGGGAAAAGAGTTCCTTTAGTCTATTTCCCAACTTCTGGACATTGGCCTaGATCAGAGCTATTTCCACA +
Preference number: 4 (lower is better)
Translates to: QHSQVTHREKSSFSLFPNFWTLA*IRAIST
Trigger: TGTGGAAATAGCTCTGATGCAGGCCAATGTCCAGAA...GTTGGGAAATAGACTAAAGGAACTCTTTTCCCGGTGTGTCACCTGGGAGTGTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR GCA 90 bp GAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTGGGTTCTGGACATTGGCCTaGATCAGAGCTATTTCCACA +
Preference number: 4 (lower is better)
Translates to: EAGIYKGFFWSIRSARVGFWTLA*IRAIST
Trigger: TGTGGAAATAGCTCTGATGCAGGCCAATGTCCAGAA...CCCAACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR GCA 90 bp GAGGAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTATGCTCATTGCCCTTTaGCTCTGGGAAGGATCTTCT +
Preference number: 4 (lower is better)
Translates to: EEAGIYKGFFWSIRSARVMLIAL*LWEGSS
Trigger: AGAAGATCCTTCCCAGAGGCAAAGGGCAATGAGCAT...AACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTCCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR GCA 90 bp GAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTGGGCTGTCCACAGCAATCTaGAGGTTGTTCATCTCATTG +
Preference number: 4 (lower is better)
Translates to: EAGIYKGFFWSIRSARVGLSTAI*RLFISL
Trigger: CAATGAGATGAACAACCTGCAGATTGCTGTGGACAG...CCCAACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR GCA 90 bp CTAAACAAAGTGCAGGAGGAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTACTTCTCCACACTGCTaGCCGTCCCTATGCCACTTG +
Preference number: 4 (lower is better)
Translates to: LNKVQEEAGIYKGFFWSITSPHC*PSLCHL
Trigger: CAAGTGGCATAGGGACGGGCAGCAGTGTGGAGAAGT...AATTGACCAAAAGAACCCTTTATAAATCCCCGCTTCCTCCTGCACTTTGTTTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CCA 90 bp GAGGAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTAAGTCCATGGAAACATaGAAAGAGCTCGACCTCCTC +
Preference number: 4 (lower is better)
Translates to: EEAGIYKGFFWSIRSARVKSMET*KELDLL
Trigger: GAGGAGGTCGAGCTCTTTCCATGTTTCCATGGACTT...AACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTCCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CCA 90 bp TGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTTCTCGTGCGGACAAGCTGCTGTaGACATTGTCAGGTCAGTTT +
Preference number: 4 (lower is better)
Translates to: WYRVQYISGGQLALYISRADKLL*TLSGQF
Trigger: AAACTGACCTGACAATGTCCACAGCAGCTTGTCCGC...ACGAGAAATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR TCA 90 bp GAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTGGGAATCACTCTCATCAATaGTGTACTTCTCCACACTGC +
Preference number: 4 (lower is better)
Translates to: EAGIYKGFFWSIRSARVGNHSHQ*CTSPHC
Trigger: GCAGTGTGGAGAAGTACATCATTGATGAGAGTGATT...CCCAACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR TCA 90 bp CTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTTACTGTGCTTCCCTCTaGGGAGCTACTGCTTTCGTT +
Preference number: 4 (lower is better)
Translates to: LQWYRVQYISGGQLALYIYCASL*GATAFV
Trigger: AACGAAAGCAGTAGCTCCTCAGAGGGAAGCACAGTA...AATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR TCA 90 bp GAGGAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTTGTTCCATCCAATGGTaGAATAATAATGGCGGAGCG +
Preference number: 4 (lower is better)
Translates to: EEAGIYKGFFWSIRSARVCSIQW*NNNGGA
Trigger: CGCTCCGCCATTATTATTTCACCATTGGATGGAACA...AACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTCCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR GCA 90 bp GAGGAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTCTTAGCCTTCTCTTCTaGAATGCGCCTTTCAATAGC +
Preference number: 4 (lower is better)
Translates to: EEAGIYKGFFWSIRSARVLSLLF*NAPFNS
Trigger: GCTATTGAAAGGCGCATTGCAGAAGAGAAGGCTAAG...AACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTCCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR GCA 90 bp GAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTGGGATATCATGTAGGTTTTaGCAGCAGCACGCAATGTCA +
Preference number: 4 (lower is better)
Translates to: EAGIYKGFFWSIRSARVGISCRF*QQHAMS
Trigger: TGACATTGCGTGCTGCTGGCAAAACCTACATGATAT...CCCAACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR GCA 90 bp CAACACTCCCAGGTGACACACCGGGAAAAGAGTTCCTTTAGTCTATTTCCCAACATATCATGTAGGTTTTaGCAGCAGCACGCAATGTCA +
Preference number: 4 (lower is better)
Translates to: QHSQVTHREKSSFSLFPNISCRF*QQHAMS
Trigger: TGACATTGCGTGCTGCTGGCAAAACCTACATGATAT...GTTGGGAAATAGACTAAAGGAACTCTTTTCCCGGTGTGTCACCTGGGAGTGTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR GCA 90 bp CAACACTCCCAGGTGACACACCGGGAAAAGAGTTCCTTTAGTCTATTTCCCAACCTGTATTTGTTAAGATaGTGGCTATGCTCATTGCCC +
Preference number: 4 (lower is better)
Translates to: QHSQVTHREKSSFSLFPNLYLLR*WLCSLP
Trigger: GGGCAATGAGCATAGCCAGCATCTTAACAAATACAG...GTTGGGAAATAGACTAAAGGAACTCTTTTCCCGGTGTGTCACCTGGGAGTGTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR GCA 90 bp GAGGAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTCTGTCCACAGCAATCTaGAGGTTGTTCATCTCATTG +
Preference number: 4 (lower is better)
Translates to: EEAGIYKGFFWSIRSARVLSTAI*RLFISL
Trigger: CAATGAGATGAACAACCTGCAGATTGCTGTGGACAG...AACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTCCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR GCA 90 bp CTAAACAAAGTGCAGGAGGAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTTGCTGCCCGTCCCTATaGCACTTGTGGTTCCATTCA +
Preference number: 4 (lower is better)
Translates to: LNKVQEEAGIYKGFFWSICCPSL*HLWFHS
Trigger: TGAATGGAACCACAAGTGGCATAGGGACGGGCAGCA...AATTGACCAAAAGAACCCTTTATAAATCCCCGCTTCCTCCTGCACTTTGTTTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CCA 90 bp GAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTGGGTATCCTTCTGGACATTaGCCTGCATCAGAGCTATTT +
Preference number: 4 (lower is better)
Translates to: EAGIYKGFFWSIRSARVGYPSGH*PASELF
Trigger: AAATAGCTCTGATGCAGGCCAATGTCCAGAAGGATA...CCCAACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CCA 90 bp GAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTGGGACACATATATCCTTCTaGACATTGGCCTGCATCAGA +
Preference number: 4 (lower is better)
Translates to: EAGIYKGFFWSIRSARVGTHISF*TLACIR
Trigger: TCTGATGCAGGCCAATGTCCAGAAGGATATATGTGT...CCCAACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CCA 90 bp CAACACTCCCAGGTGACACACCGGGAAAAGAGTTCCTTTAGTCTATTTCCCAACACACATATATCCTTCTaGACATTGGCCTGCATCAGA +
Preference number: 4 (lower is better)
Translates to: QHSQVTHREKSSFSLFPNTHISF*TLACIR
Trigger: TCTGATGCAGGCCAATGTCCAGAAGGATATATGTGT...GTTGGGAAATAGACTAAAGGAACTCTTTTCCCGGTGTGTCACCTGGGAGTGTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CCA 90 bp TGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTTCTCGTGTCTATTCCCTTCTATaGAGAAGCGAAACCCCTTCC +
Preference number: 4 (lower is better)
Translates to: WYRVQYISGGQLALYISRVYSLL*RSETPS
Trigger: GGAAGGGGTTTCGCTTCTCCATAGAAGGGAATAGAC...ACGAGAAATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CCA 90 bp CTAAACAAAGTGCAGGAGGAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCATCTTCCCATTGGCTaGAAACACCGCCAGCATTCG +
Preference number: 4 (lower is better)
Translates to: LNKVQEEAGIYKGFFWSIHLPIG*KHRQHS
Trigger: CGAATGCTGGCGGTGTTTCCAGCCAATGGGAAGATG...AATTGACCAAAAGAACCCTTTATAAATCCCCGCTTCCTCCTGCACTTTGTTTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CCA 90 bp TGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTTCTCGTAAGTCCATGGAAACATaGAAAGAGCTCGACCTCCTC +
Preference number: 4 (lower is better)
Translates to: WYRVQYISGGQLALYISRKSMET*KELDLL
Trigger: GAGGAGGTCGAGCTCTTTCCATGTTTCCATGGACTT...ACGAGAAATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CCA 90 bp GAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTGGGTTTATACCAACAGGGTaGACATTTCTGCCTGGATTC +
Preference number: 4 (lower is better)
Translates to: EAGIYKGFFWSIRSARVGFIPTG*TFLPGF
Trigger: GAATCCAGGCAGAAATGTCCACCCTGTTGGTATAAA...CCCAACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CCA 90 bp CAACACTCCCAGGTGACACACCGGGAAAAGAGTTCCTTTAGTCTATTTCCCAACGGAGTTTGCAGTCAGTaGCAATTTTGCAGACACAAT +
Preference number: 4 (lower is better)
Translates to: QHSQVTHREKSSFSLFPNGVCSQ*QFCRHN
Trigger: ATTGTGTCTGCAAAATTGCCACTGACTGCAAACTCC...GTTGGGAAATAGACTAAAGGAACTCTTTTCCCGGTGTGTCACCTGGGAGTGTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CCA 90 bp GAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTGGGGGAGTTTGCAGTCAGTaGCAATTTTGCAGACACAAT +
Preference number: 4 (lower is better)
Translates to: EAGIYKGFFWSIRSARVGGVCSQ*QFCRHN
Trigger: ATTGTGTCTGCAAAATTGCCACTGACTGCAAACTCC...CCCAACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CCA 90 bp GCATCCACACTATCTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTCAGCACTTGAATCTCTaGACACAGCCTTCAGTGAAG +
Preference number: 4 (lower is better)
Translates to: ASTLSTMVQSTVYFRWTAQHLNL*TQPSVK
Trigger: CTTCACTGAAGGCTGTGTCCAGAGATTCAAGTGCTG...AGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAGATAGTGTGGATGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CCA 90 bp GCATCCACACTATCTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTGTGTTTCTCCACGATTaGCTTTGTCACCCGATCGTA +
Preference number: 4 (lower is better)
Translates to: ASTLSTMVQSTVYFRWTAVFLHD*LCHPIV
Trigger: TACGATCGGGTGACAAAGCCAATCGTGGAGAAACAC...AGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAGATAGTGTGGATGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
3UTR CAA 72 bp ATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTaGGGGGTAGGGAGTCAGAGTCATAATTTAGAGACC +
Preference number: 4 (lower is better)
Translates to: IKGSFGQFALLG*GVGSQSHNLET
Trigger: GGTCTCTAAATTATGACTCTGACTCCCTACCCCCAACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR TCA 90 bp TGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTTCTCGTTGCTCCAACATCTGCTaGAATTCTGCCTCTTTCTGT +
Preference number: 4 (lower is better)
Translates to: WYRVQYISGGQLALYISRCSNIC*NSASFC
Trigger: ACAGAAAGAGGCAGAATTTCAGCAGATGTTGGAGCA...ACGAGAAATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR TCA 90 bp CTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTAAGACTTTGCCAACTTaGACACTCGGAGCAGTCGAA +
Preference number: 4 (lower is better)
Translates to: LQWYRVQYISGGQLALYIKTLPT*TLGAVE
Trigger: TTCGACTGCTCCGAGTGTTCAAGTTGGCAAAGTCTT...AATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR TCA 90 bp GAGGAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTAATCACTCTCATCAATaGTGTACTTCTCCACACTGC +
Preference number: 4 (lower is better)
Translates to: EEAGIYKGFFWSIRSARVNHSHQ*CTSPHC
Trigger: GCAGTGTGGAGAAGTACATCATTGATGAGAGTGATT...AACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTCCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR TCA 90 bp TGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTTCTCGTATTTTTCAAATTCCATaGACTGGGTGGCGTCAGGGT +
Preference number: 4 (lower is better)
Translates to: WYRVQYISGGQLALYISRIFQIP*TGWRQG
Trigger: ACCCTGACGCCACCCAGTTCATGGAATTTGAAAAAT...ACGAGAAATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR GCA 90 bp TGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTTCTCGTTTCTGGACATTGGCCTaGATCAGAGCTATTTCCACA +
Preference number: 4 (lower is better)
Translates to: WYRVQYISGGQLALYISRFWTLA*IRAIST
Trigger: TGTGGAAATAGCTCTGATGCAGGCCAATGTCCAGAA...ACGAGAAATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CCA 90 bp GAGGAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTGGAGTTTGCAGTCAGTaGCAATTTTGCAGACACAAT +
Preference number: 4 (lower is better)
Translates to: EEAGIYKGFFWSIRSARVGVCSQ*QFCRHN
Trigger: ATTGTGTCTGCAAAATTGCCACTGACTGCAAACTCC...AACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTCCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CCA 90 bp CTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTCAGCACTTGAATCTCTaGACACAGCCTTCAGTGAAG +
Preference number: 4 (lower is better)
Translates to: LQWYRVQYISGGQLALYIQHLNL*TQPSVK
Trigger: CTTCACTGAAGGCTGTGTCCAGAGATTCAAGTGCTG...AATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CCA 90 bp GAGGAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTAAGTTTGTTTGGTTGTaGCAAATTGAGAGGGGGTTC +
Preference number: 4 (lower is better)
Translates to: EEAGIYKGFFWSIRSARVKFVWL*QIERGF
Trigger: GAACCCCCTCTCAATTTGCCACAACCAAACAAACTT...AACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTCCTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CCA 90 bp GAGGAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTGAGCTGAAGTTTGTTTaGTTGTGGCAAATTGAGAGG +
Preference number: 4 (lower is better)
Translates to: EEAGIYKGFFWSIRSARVELKFV*LWQIER
Trigger: CCTCTCAATTTGCCACAACCAAACAAACTTCAGCTC...AACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTCCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CCA 90 bp CTAAACAAAGTGCAGGAGGAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTGCGGACAAGCTGCTGTaGACATTGTCAGGTCAGTTT +
Preference number: 4 (lower is better)
Translates to: LNKVQEEAGIYKGFFWSIADKLL*TLSGQF
Trigger: AAACTGACCTGACAATGTCCACAGCAGCTTGTCCGC...AATTGACCAAAAGAACCCTTTATAAATCCCCGCTTCCTCCTGCACTTTGTTTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CCA 90 bp CTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTGTGTTTCTCCACGATTaGCTTTGTCACCCGATCGTA +
Preference number: 4 (lower is better)
Translates to: LQWYRVQYISGGQLALYIVFLHD*LCHPIV
Trigger: TACGATCGGGTGACAAAGCCAATCGTGGAGAAACAC...AATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR TCA 90 bp CTAAACAAAGTGCAGGAGGAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTTTTCTTCTGGTTCAATaGCAGGCTGTTCCTCTGCAG +
Preference number: 4 (lower is better)
Translates to: LNKVQEEAGIYKGFFWSIFLLVQ*QAVPLQ
Trigger: CTGCAGAGGAACAGCCTGTCATTGAACCAGAAGAAA...AATTGACCAAAAGAACCCTTTATAAATCCCCGCTTCCTCCTGCACTTTGTTTAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR TCA 90 bp CTAAACAAAGTGCAGGAGGAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTTCTTCCACGCTGATTTaGCAGCACTTGAATCTCTGG +
Preference number: 4 (lower is better)
Translates to: LNKVQEEAGIYKGFFWSISSTLI*QHLNLW
Trigger: CCAGAGATTCAAGTGCTGTCAAATCAGCGTGGAAGA...AATTGACCAAAAGAACCCTTTATAAATCCCCGCTTCCTCCTGCACTTTGTTTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR TCA 90 bp CAACACTCCCAGGTGACACACCGGGAAAAGAGTTCCTTTAGTCTATTTCCCAACTTTAGGCAATCAGAATaGTTATTGACTTCGCTGATC +
Preference number: 4 (lower is better)
Translates to: QHSQVTHREKSSFSLFPNFRQSE*LLTSLI
Trigger: GATCAGCGAAGTCAATAATCATTCTGATTGCCTAAA...GTTGGGAAATAGACTAAAGGAACTCTTTTCCCGGTGTGTCACCTGGGAGTGTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR TCA 90 bp CAACACTCCCAGGTGACACACCGGGAAAAGAGTTCCTTTAGTCTATTTCCCAACTTAAATGTGGCAACTTaGAGCAAAGAAAGATACCCA +
Preference number: 4 (lower is better)
Translates to: QHSQVTHREKSSFSLFPNLNVAT*SKERYP
Trigger: TGGGTATCTTTCTTTGCTTCAAGTTGCCACATTTAA...GTTGGGAAATAGACTAAAGGAACTCTTTTCCCGGTGTGTCACCTGGGAGTGTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR TCA 90 bp GAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTGGGGTCATAAAGATGTCTTaGCCTCCAAACTTCTTCTTT +
Preference number: 4 (lower is better)
Translates to: EAGIYKGFFWSIRSARVGVIKMS*PPNFFF
Trigger: AAAGAAGAAGTTTGGAGGTCAAGACATCTTTATGAC...CCCAACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR TCA 90 bp CTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTCACCAGGTTGATGCGTaGCAAAATGCTTGTCACATA +
Preference number: 4 (lower is better)
Translates to: LQWYRVQYISGGQLALYIHQVDA*QNACHI
Trigger: TATGTGACAAGCATTTTGTCACGCATCAACCTGGTG...AATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR TCA 90 bp CTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTTGTTCCATCCAATGGTaGAATAATAATGGCGGAGCG +
Preference number: 4 (lower is better)
Translates to: LQWYRVQYISGGQLALYICSIQW*NNNGGA
Trigger: CGCTCCGCCATTATTATTTCACCATTGGATGGAACA...AATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR TCA 90 bp CTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTATTTTTCAAATTCCATaGACTGGGTGGCGTCAGGGT +
Preference number: 4 (lower is better)
Translates to: LQWYRVQYISGGQLALYIIFQIP*TGWRQG
Trigger: ACCCTGACGCCACCCAGTTCATGGAATTTGAAAAAT...AATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR GCA 90 bp GAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTGGGAAACTCCGTCACATATaGGAATGTAATGACAGTGAA +
Preference number: 4 (lower is better)
Translates to: EAGIYKGFFWSIRSARVGKLRHI*ECNDSE
Trigger: TTCACTGTCATTACATTCGCATATGTGACGGAGTTT...CCCAACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR GCA 90 bp GCAAATATCTTCCATGAAAAACTGCTGTGGACAGAAAGTAAGAAAAGTGATTGTGGCTCAGGTTACTGTTaGGTCGCTCTCCGTGTCTTC +
Preference number: 4 (lower is better)
Translates to: ANIFHEKLLWTESKKSDCGSGYC*VALRVF
Trigger: GAAGACACGGAGAGCGACGCAACAGTAACCTGAGCC...ACAATCACTTTTCTTACTTTCTGTCCACAGCAGTTTTTCATGGAAGATATTTGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR GCA 90 bp GCATCCACACTATCTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTCTGTATTTGTTAAGATaGTGGCTATGCTCATTGCCC +
Preference number: 4 (lower is better)
Translates to: ASTLSTMVQSTVYFRWTALYLLR*WLCSLP
Trigger: GGGCAATGAGCATAGCCAGCATCTTAACAAATACAG...AGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAGATAGTGTGGATGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR GCA 90 bp CTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTCTGTCCACAGCAATCTaGAGGTTGTTCATCTCATTG +
Preference number: 4 (lower is better)
Translates to: LQWYRVQYISGGQLALYILSTAI*RLFISL
Trigger: CAATGAGATGAACAACCTGCAGATTGCTGTGGACAG...AATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR GCA 90 bp GCAAATATCTTCCATGAAAAACTGCTGTGGACAGAAAGTAAGAAAAGTGATTGTACTTCTCCACACTGCTaGCCGTCCCTATGCCACTTG +
Preference number: 4 (lower is better)
Translates to: ANIFHEKLLWTESKKSDCTSPHC*PSLCHL
Trigger: CAAGTGGCATAGGGACGGGCAGCAGTGTGGAGAAGT...ACAATCACTTTTCTTACTTTCTGTCCACAGCAGTTTTTCATGGAAGATATTTGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR GCA 90 bp GGGCGGACAAGCTGCTGTGGACATTGTCAGGTCAGTTTTCTCCGTAATAGAGTTCCAAACTTCTTCTTTTaGTGGTTGAAATTGTCGATA +
Preference number: 4 (lower is better)
Translates to: GRTSCCGHCQVSFLRNRVPNFFF*WLKLSI
Trigger: TATCGACAATTTCAACCAGCAAAAGAAGAAGTTTGG...AACTCTATTACGGAGAAAACTGACCTGACAATGTCCACAGCAGCTTGTCCGCCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000156865.3
CDS-3UTR GCA 90 bp CTAAACAAAGTGCAGGAGGAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTTCATCCTTCCCTTCCTaGTCGTGTTTCTCCACGATT +
Preference number: 4 (lower is better)
Translates to: LNKVQEEAGIYKGFFWSISSFPS*SCFSTI
Trigger: AATCGTGGAGAAACACGAGCAGGAAGGGAAGGATGA...AATTGACCAAAAGAACCCTTTATAAATCCCCGCTTCCTCCTGCACTTTGTTTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CCA 90 bp GCATCCACACTATCTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTATCCTTCTGGACATTaGCCTGCATCAGAGCTATTT +
Preference number: 4 (lower is better)
Translates to: ASTLSTMVQSTVYFRWTAYPSGH*PASELF
Trigger: AAATAGCTCTGATGCAGGCCAATGTCCAGAAGGATA...AGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAGATAGTGTGGATGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CCA 90 bp GCAAATATCTTCCATGAAAAACTGCTGTGGACAGAAAGTAAGAAAAGTGATTGTCTGCACTGGGCTCCCTaGAATGTTCTGAGGCTGTTG +
Preference number: 4 (lower is better)
Translates to: ANIFHEKLLWTESKKSDCLHWAP*NVLRLL
Trigger: CAACAGCCTCAGAACATTCCAGGGAGCCCAGTGCAG...ACAATCACTTTTCTTACTTTCTGTCCACAGCAGTTTTTCATGGAAGATATTTGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CCA 90 bp CTAAACAAAGTGCAGGAGGAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTAAGTCCATGGAAACATaGAAAGAGCTCGACCTCCTC +
Preference number: 4 (lower is better)
Translates to: LNKVQEEAGIYKGFFWSIKSMET*KELDLL
Trigger: GAGGAGGTCGAGCTCTTTCCATGTTTCCATGGACTT...AATTGACCAAAAGAACCCTTTATAAATCCCCGCTTCCTCCTGCACTTTGTTTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CCA 90 bp CTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTTCATCTCAGTTTCAGTaGTTGTTCCCTCTGGCAGAA +
Preference number: 4 (lower is better)
Translates to: LQWYRVQYISGGQLALYISSQFQ*LFPLAE
Trigger: TTCTGCCAGAGGGAACAACCACTGAAACTGAGATGA...AATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077489.12
ENSMUST00000112371.9
CDS-3UTR TCA 90 bp GAGGAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTTTTAGGCAATCAGAATaGTTATTGACTTCGCTGATC +
Preference number: 4 (lower is better)
Translates to: EEAGIYKGFFWSIRSARVFRQSE*LLTSLI
Trigger: GATCAGCGAAGTCAATAATCATTCTGATTGCCTAAA...AACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTCCTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR TCA 90 bp GAGGAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTGTCATAAAGATGTCTTaGCCTCCAAACTTCTTCTTT +
Preference number: 4 (lower is better)
Translates to: EEAGIYKGFFWSIRSARVVIKMS*PPNFFF
Trigger: AAAGAAGAAGTTTGGAGGTCAAGACATCTTTATGAC...AACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTCCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR TCA 90 bp GAGGAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTTCAAAAACCATTCCTTaGAATTTGTTTCCAGGTCGA +
Preference number: 4 (lower is better)
Translates to: EEAGIYKGFFWSIRSARVSKTIP*NLFPGR
Trigger: TCGACCTGGAAACAAATTTCAAGGAATGGTTTTTGA...AACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTCCTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR TCA 90 bp CTAAACAAAGTGCAGGAGGAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCACCAGGTTGATGCGTaGCAAAATGCTTGTCACATA +
Preference number: 4 (lower is better)
Translates to: LNKVQEEAGIYKGFFWSIHQVDA*QNACHI
Trigger: TATGTGACAAGCATTTTGTCACGCATCAACCTGGTG...AATTGACCAAAAGAACCCTTTATAAATCCCCGCTTCCTCCTGCACTTTGTTTAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR TCA 90 bp CTAAACAAAGTGCAGGAGGAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTATTTTTCAAATTCCATaGACTGGGTGGCGTCAGGGT +
Preference number: 4 (lower is better)
Translates to: LNKVQEEAGIYKGFFWSIIFQIP*TGWRQG
Trigger: ACCCTGACGCCACCCAGTTCATGGAATTTGAAAAAT...AATTGACCAAAAGAACCCTTTATAAATCCCCGCTTCCTCCTGCACTTTGTTTAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR GCA 90 bp GCAAATATCTTCCATGAAAAACTGCTGTGGACAGAAAGTAAGAAAAGTGATTGTTTGCCCATGAAGAGCTaGAACCCGATGAGTGCGAAC +
Preference number: 4 (lower is better)
Translates to: ANIFHEKLLWTESKKSDCLPMKS*NPMSAN
Trigger: GTTCGCACTCATCGGGTTGCAGCTCTTCATGGGCAA...ACAATCACTTTTCTTACTTTCTGTCCACAGCAGTTTTTCATGGAAGATATTTGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR GCA 90 bp GAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTGGGTTATATTCTTCTCTATaGTATGTTCCTCAAGGGAAG +
Preference number: 4 (lower is better)
Translates to: EAGIYKGFFWSIRSARVGLYSSL*YVPQGK
Trigger: CTTCCCTTGAGGAACATAGCATAGAGAAGAATATAA...CCCAACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR GCA 90 bp CAACACTCCCAGGTGACACACCGGGAAAAGAGTTCCTTTAGTCTATTTCCCAACATAGTAAGGATCCATTaGGATGATTTTCAGGAACAT +
Preference number: 4 (lower is better)
Translates to: QHSQVTHREKSSFSLFPNIVRIH*DDFQEH
Trigger: ATGTTCCTGAAAATCATCGCAATGGATCCTTACTAT...GTTGGGAAATAGACTAAAGGAACTCTTTTCCCGGTGTGTCACCTGGGAGTGTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR GCA 90 bp GAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTGGGATAGTAAGGATCCATTaGGATGATTTTCAGGAACAT +
Preference number: 4 (lower is better)
Translates to: EAGIYKGFFWSIRSARVGIVRIH*DDFQEH
Trigger: ATGTTCCTGAAAATCATCGCAATGGATCCTTACTAT...CCCAACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR GCA 90 bp GAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTGGGATTTCTGGAATCAACTaGAGCATACATGATATCCAT +
Preference number: 4 (lower is better)
Translates to: EAGIYKGFFWSIRSARVGISGIN*SIHDIH
Trigger: ATGGATATCATGTATGCTGCAGTTGATTCCAGAAAT...CCCAACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR GCA 90 bp CAACACTCCCAGGTGACACACCGGGAAAAGAGTTCCTTTAGTCTATTTCCCAACCCAAACTTCTTCTTTTaGTGGTTGAAATTGTCGATA +
Preference number: 4 (lower is better)
Translates to: QHSQVTHREKSSFSLFPNPNFFF*WLKLSI
Trigger: TATCGACAATTTCAACCAGCAAAAGAAGAAGTTTGG...GTTGGGAAATAGACTAAAGGAACTCTTTTCCCGGTGTGTCACCTGGGAGTGTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CCA 90 bp GAGGAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTTCAGACTCAGACTTGTaGAATTCATCATCATCTTTC +
Preference number: 4 (lower is better)
Translates to: EEAGIYKGFFWSIRSARVSDSDL*NSSSSF
Trigger: GAAAGATGATGATGAATTCCACAAGTCTGAGTCTGA...AACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTCCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CCA 90 bp GCAAATATCTTCCATGAAAAACTGCTGTGGACAGAAAGTAAGAAAAGTGATTGTCATCTTCCCATTGGCTaGAAACACCGCCAGCATTCG +
Preference number: 4 (lower is better)
Translates to: ANIFHEKLLWTESKKSDCHLPIG*KHRQHS
Trigger: CGAATGCTGGCGGTGTTTCCAGCCAATGGGAAGATG...ACAATCACTTTTCTTACTTTCTGTCCACAGCAGTTTTTCATGGAAGATATTTGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CCA 90 bp GCAAATATCTTCCATGAAAAACTGCTGTGGACAGAAAGTAAGAAAAGTGATTGTTGTGCATCTTCCCATTaGCTGGAAACACCGCCAGCA +
Preference number: 4 (lower is better)
Translates to: ANIFHEKLLWTESKKSDCCASSH*LETPPA
Trigger: TGCTGGCGGTGTTTCCAGCCAATGGGAAGATGCACA...ACAATCACTTTTCTTACTTTCTGTCCACAGCAGTTTTTCATGGAAGATATTTGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CCA 90 bp CTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTGAGCTGAAGTTTGTTTaGTTGTGGCAAATTGAGAGG +
Preference number: 4 (lower is better)
Translates to: LQWYRVQYISGGQLALYIELKFV*LWQIER
Trigger: CCTCTCAATTTGCCACAACCAAACAAACTTCAGCTC...AATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CCA 90 bp GCATCCACACTATCTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTCATCTCAGTTTCAGTaGTTGTTCCATTGTCATCAG +
Preference number: 4 (lower is better)
Translates to: ASTLSTMVQSTVYFRWTASSQFQ*LFHCHQ
Trigger: CTGATGACAATGGAACAACCACTGAAACTGAGATGA...AGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAGATAGTGTGGATGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112366.8
CDS-3UTR TCA 90 bp CTAAACAAAGTGCAGGAGGAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTAATCACTCTCATCAATaGTGTACTTCTCCACACTGC +
Preference number: 4 (lower is better)
Translates to: LNKVQEEAGIYKGFFWSINHSHQ*CTSPHC
Trigger: GCAGTGTGGAGAAGTACATCATTGATGAGAGTGATT...AATTGACCAAAAGAACCCTTTATAAATCCCCGCTTCCTCCTGCACTTTGTTTAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR TCA 90 bp AGCTGCTGTGGACATTGTCAGGTCAGTTTTCTCCGTAATAGAGTTTTCGTTTATAATCACTCTCATCAATaGTGTACTTCTCCACACTGC +
Preference number: 4 (lower is better)
Translates to: SCCGHCQVSFLRNRVFVYNHSHQ*CTSPHC
Trigger: GCAGTGTGGAGAAGTACATCATTGATGAGAGTGATT...ATAAACGAAAACTCTATTACGGAGAAAACTGACCTGACAATGTCCACAGCAGCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000156865.3
CDS-3UTR TCA 90 bp GCATCCACACTATCTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTTTAGGCAATCAGAATaGTTATTGACTTCGCTGATC +
Preference number: 4 (lower is better)
Translates to: ASTLSTMVQSTVYFRWTAFRQSE*LLTSLI
Trigger: GATCAGCGAAGTCAATAATCATTCTGATTGCCTAAA...AGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAGATAGTGTGGATGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR TCA 90 bp GCATCCACACTATCTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTTAAATGTGGCAACTTaGAGCAAAGAAAGATACCCA +
Preference number: 4 (lower is better)
Translates to: ASTLSTMVQSTVYFRWTALNVAT*SKERYP
Trigger: TGGGTATCTTTCTTTGCTTCAAGTTGCCACATTTAA...AGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAGATAGTGTGGATGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR TCA 90 bp TGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTTCTCGTGTCATAAAGATGTCTTaGCCTCCAAACTTCTTCTTT +
Preference number: 4 (lower is better)
Translates to: WYRVQYISGGQLALYISRVIKMS*PPNFFF
Trigger: AAAGAAGAAGTTTGGAGGTCAAGACATCTTTATGAC...ACGAGAAATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR TCA 90 bp GCAAATATCTTCCATGAAAAACTGCTGTGGACAGAAAGTAAGAAAAGTGATTGTTTGGTTGTGGCAAATTaGGAGGGGGTTCTAGAGCAG +
Preference number: 4 (lower is better)
Translates to: ANIFHEKLLWTESKKSDCLVVAN*EGVLEQ
Trigger: CTGCTCTAGAACCCCCTCTCAATTTGCCACAACCAA...ACAATCACTTTTCTTACTTTCTGTCCACAGCAGTTTTTCATGGAAGATATTTGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR GCA 90 bp TGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTTCTCGTAAACTCCGTCACATATaGGAATGTAATGACAGTGAA +
Preference number: 4 (lower is better)
Translates to: WYRVQYISGGQLALYISRKLRHI*ECNDSE
Trigger: TTCACTGTCATTACATTCGCATATGTGACGGAGTTT...ACGAGAAATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR GCA 90 bp GAGGAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTTTATATTCTTCTCTATaGTATGTTCCTCAAGGGAAG +
Preference number: 4 (lower is better)
Translates to: EEAGIYKGFFWSIRSARVLYSSL*YVPQGK
Trigger: CTTCCCTTGAGGAACATAGCATAGAGAAGAATATAA...AACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTCCTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR GCA 90 bp GAGGAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTATAGTAAGGATCCATTaGGATGATTTTCAGGAACAT +
Preference number: 4 (lower is better)
Translates to: EEAGIYKGFFWSIRSARVIVRIH*DDFQEH
Trigger: ATGTTCCTGAAAATCATCGCAATGGATCCTTACTAT...AACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTCCTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR GCA 90 bp TGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTTCTCGTAGTCAGTGGCAATTTTaGAGACACAATCTTTGTAAC +
Preference number: 4 (lower is better)
Translates to: WYRVQYISGGQLALYISRSQWQF*RHNLCN
Trigger: GTTACAAAGATTGTGTCTGCAAAATTGCCACTGACT...ACGAGAAATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR GCA 90 bp GCATCCACACTATCTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTAGTCAGTGGCAATTTTaGAGACACAATCTTTGTAAC +
Preference number: 4 (lower is better)
Translates to: ASTLSTMVQSTVYFRWTASQWQF*RHNLCN
Trigger: GTTACAAAGATTGTGTCTGCAAAATTGCCACTGACT...AGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAGATAGTGTGGATGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR GCA 90 bp GAGGAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTCCAAACTTCTTCTTTTaGTGGTTGAAATTGTCGATA +
Preference number: 4 (lower is better)
Translates to: EEAGIYKGFFWSIRSARVPNFFF*WLKLSI
Trigger: TATCGACAATTTCAACCAGCAAAAGAAGAAGTTTGG...AACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTCCTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CCA 90 bp CTAAACAAAGTGCAGGAGGAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTACACATATATCCTTCTaGACATTGGCCTGCATCAGA +
Preference number: 4 (lower is better)
Translates to: LNKVQEEAGIYKGFFWSITHISF*TLACIR
Trigger: TCTGATGCAGGCCAATGTCCAGAAGGATATATGTGT...AATTGACCAAAAGAACCCTTTATAAATCCCCGCTTCCTCCTGCACTTTGTTTAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CCA 90 bp TGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTTCTCGTTCAGACTCAGACTTGTaGAATTCATCATCATCTTTC +
Preference number: 4 (lower is better)
Translates to: WYRVQYISGGQLALYISRSDSDL*NSSSSF
Trigger: GAAAGATGATGATGAATTCCACAAGTCTGAGTCTGA...ACGAGAAATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CCA 90 bp CTAAACAAAGTGCAGGAGGAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTTTTATACCAACAGGGTaGACATTTCTGCCTGGATTC +
Preference number: 4 (lower is better)
Translates to: LNKVQEEAGIYKGFFWSIFIPTG*TFLPGF
Trigger: GAATCCAGGCAGAAATGTCCACCCTGTTGGTATAAA...AATTGACCAAAAGAACCCTTTATAAATCCCCGCTTCCTCCTGCACTTTGTTTAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CCA 90 bp GTCAGTTTTCTCCGTAATAGAGTTTTCGTTTATTCTGTCAATGAGCATGTCTTCCAGCACTTGAATCTCTaGACACAGCCTTCAGTGAAG +
Preference number: 4 (lower is better)
Translates to: VSFLRNRVFVYSVNEHVFQHLNL*TQPSVK
Trigger: CTTCACTGAAGGCTGTGTCCAGAGATTCAAGTGCTG...GAAGACATGCTCATTGACAGAATAAACGAAAACTCTATTACGGAGAAAACTGAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000156865.3
ENSMUST00000200839.4
CDS-3UTR CCA 90 bp GCATCCACACTATCTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTGTAGTTCAACATTTCTaGAATCAACTGCAGCATACA +
Preference number: 4 (lower is better)
Translates to: ASTLSTMVQSTVYFRWTAVVQHF*NQLQHT
Trigger: TGTATGCTGCAGTTGATTCCAGAAATGTTGAACTAC...AGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAGATAGTGTGGATGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CCA 90 bp TGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTTCTCGTGTAGTTCAACATTTCTaGAATCAACTGCAGCATACA +
Preference number: 4 (lower is better)
Translates to: WYRVQYISGGQLALYISRVVQHF*NQLQHT
Trigger: TGTATGCTGCAGTTGATTCCAGAAATGTTGAACTAC...ACGAGAAATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CCA 90 bp CTAAACAAAGTGCAGGAGGAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTAAGTTTGTTTGGTTGTaGCAAATTGAGAGGGGGTTC +
Preference number: 4 (lower is better)
Translates to: LNKVQEEAGIYKGFFWSIKFVWL*QIERGF
Trigger: GAACCCCCTCTCAATTTGCCACAACCAAACAAACTT...AATTGACCAAAAGAACCCTTTATAAATCCCCGCTTCCTCCTGCACTTTGTTTAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CCA 90 bp GCAAATATCTTCCATGAAAAACTGCTGTGGACAGAAAGTAAGAAAAGTGATTGTGCGGACAAGCTGCTGTaGACATTGTCAGGTCAGTTT +
Preference number: 4 (lower is better)
Translates to: ANIFHEKLLWTESKKSDCADKLL*TLSGQF
Trigger: AAACTGACCTGACAATGTCCACAGCAGCTTGTCCGC...ACAATCACTTTTCTTACTTTCTGTCCACAGCAGTTTTTCATGGAAGATATTTGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CCA 90 bp GTCAGTTTTCTCCGTAATAGAGTTTTCGTTTATTCTGTCAATGAGCATGTCTTCCCACCCCATCCAAGTTaGAGCAAGATTATCCCTCAT +
Preference number: 4 (lower is better)
Translates to: VSFLRNRVFVYSVNEHVFPPHPS*SKIIPH
Trigger: ATGAGGGATAATCTTGCTCCAACTTGGATGGGGTGG...GAAGACATGCTCATTGACAGAATAAACGAAAACTCTATTACGGAGAAAACTGAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000200839.4
CDS-3UTR TCA 90 bp GCAAATATCTTCCATGAAAAACTGCTGTGGACAGAAAGTAAGAAAAGTGATTGTTCTTCCACGCTGATTTaGCAGCACTTGAATCTCTGG +
Preference number: 4 (lower is better)
Translates to: ANIFHEKLLWTESKKSDCSSTLI*QHLNLW
Trigger: CCAGAGATTCAAGTGCTGTCAAATCAGCGTGGAAGA...ACAATCACTTTTCTTACTTTCTGTCCACAGCAGTTTTTCATGGAAGATATTTGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
ENSMUST00000200839.4
CDS-3UTR TCA 90 bp CTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTTTAAATGTGGCAACTTaGAGCAAAGAAAGATACCCA +
Preference number: 4 (lower is better)
Translates to: LQWYRVQYISGGQLALYILNVAT*SKERYP
Trigger: TGGGTATCTTTCTTTGCTTCAAGTTGCCACATTTAA...AATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR GCA 90 bp CTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTAAACAGGGACAAAAATaGCCAACTGAAGGTATCAAA +
Preference number: 4 (lower is better)
Translates to: LQWYRVQYISGGQLALYIKQGQK*PTEGIK
Trigger: TTTGATACCTTCAGTTGGGCATTTTTGTCCCTGTTT...AATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR GCA 90 bp TGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTTCTCGTCCAAACTTCTTCTTTTaGTGGTTGAAATTGTCGATA +
Preference number: 4 (lower is better)
Translates to: WYRVQYISGGQLALYISRPNFFF*WLKLSI
Trigger: TATCGACAATTTCAACCAGCAAAAGAAGAAGTTTGG...ACGAGAAATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR GCA 90 bp GCAAATATCTTCCATGAAAAACTGCTGTGGACAGAAAGTAAGAAAAGTGATTGTTCATCCTTCCCTTCCTaGTCGTGTTTCTCCACGATT +
Preference number: 4 (lower is better)
Translates to: ANIFHEKLLWTESKKSDCSSFPS*SCFSTI
Trigger: AATCGTGGAGAAACACGAGCAGGAAGGGAAGGATGA...ACAATCACTTTTCTTACTTTCTGTCCACAGCAGTTTTTCATGGAAGATATTTGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CCA 90 bp GCAAATATCTTCCATGAAAAACTGCTGTGGACAGAAAGTAAGAAAAGTGATTGTGTCTATTCCCTTCTATaGAGAAGCGAAACCCCTTCC +
Preference number: 4 (lower is better)
Translates to: ANIFHEKLLWTESKKSDCVYSLL*RSETPS
Trigger: GGAAGGGGTTTCGCTTCTCCATAGAAGGGAATAGAC...ACAATCACTTTTCTTACTTTCTGTCCACAGCAGTTTTTCATGGAAGATATTTGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR TCA 90 bp CTAAACAAAGTGCAGGAGGAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTAAGTATATATTCCTGTaGAGGTGTACTCCACATTCT +
Preference number: 4 (lower is better)
Translates to: LNKVQEEAGIYKGFFWSIKYIFL*RCTPHS
Trigger: AGAATGTGGAGTACACCTTCACAGGAATATATACTT...AATTGACCAAAAGAACCCTTTATAAATCCCCGCTTCCTCCTGCACTTTGTTTAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR TCA 90 bp CTAAACAAAGTGCAGGAGGAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTTCAAAAACCATTCCTTaGAATTTGTTTCCAGGTCGA +
Preference number: 4 (lower is better)
Translates to: LNKVQEEAGIYKGFFWSISKTIP*NLFPGR
Trigger: TCGACCTGGAAACAAATTTCAAGGAATGGTTTTTGA...AATTGACCAAAAGAACCCTTTATAAATCCCCGCTTCCTCCTGCACTTTGTTTAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR GCA 90 bp CTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTATTTCTGGAATCAACTaGAGCATACATGATATCCAT +
Preference number: 4 (lower is better)
Translates to: LQWYRVQYISGGQLALYIISGIN*SIHDIH
Trigger: ATGGATATCATGTATGCTGCAGTTGATTCCAGAAAT...AATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CCA 90 bp GCAAATATCTTCCATGAAAAACTGCTGTGGACAGAAAGTAAGAAAAGTGATTGTTCATCTCAGTTTCAGTaGTTGTTCCCTCTGGCAGAA +
Preference number: 4 (lower is better)
Translates to: ANIFHEKLLWTESKKSDCSSQFQ*LFPLAE
Trigger: TTCTGCCAGAGGGAACAACCACTGAAACTGAGATGA...ACAATCACTTTTCTTACTTTCTGTCCACAGCAGTTTTTCATGGAAGATATTTGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000077489.12
ENSMUST00000112371.9
CDS-3UTR GCA 90 bp AGCTGCTGTGGACATTGTCAGGTCAGTTTTCTCCGTAATAGAGTTTTCGTTTATATTTCTGGAATCAACTaGAGCATACATGATATCCAT +
Preference number: 4 (lower is better)
Translates to: SCCGHCQVSFLRNRVFVYISGIN*SIHDIH
Trigger: ATGGATATCATGTATGCTGCAGTTGATTCCAGAAAT...ATAAACGAAAACTCTATTACGGAGAAAACTGACCTGACAATGTCCACAGCAGCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000156865.3
CDS-3UTR CCA 90 bp GCAAATATCTTCCATGAAAAACTGCTGTGGACAGAAAGTAAGAAAAGTGATTGTGAGCTGAAGTTTGTTTaGTTGTGGCAAATTGAGAGG +
Preference number: 4 (lower is better)
Translates to: ANIFHEKLLWTESKKSDCELKFV*LWQIER
Trigger: CCTCTCAATTTGCCACAACCAAACAAACTTCAGCTC...ACAATCACTTTTCTTACTTTCTGTCCACAGCAGTTTTTCATGGAAGATATTTGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR TCA 90 bp GTCAGTTTTCTCCGTAATAGAGTTTTCGTTTATTCTGTCAATGAGCATGTCTTCGTCATAAAGATGTCTTaGCCTCCAAACTTCTTCTTT +
Preference number: 4 (lower is better)
Translates to: VSFLRNRVFVYSVNEHVFVIKMS*PPNFFF
Trigger: AAAGAAGAAGTTTGGAGGTCAAGACATCTTTATGAC...GAAGACATGCTCATTGACAGAATAAACGAAAACTCTATTACGGAGAAAACTGAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000156865.3
CDS-3UTR TCA 90 bp GCAAATATCTTCCATGAAAAACTGCTGTGGACAGAAAGTAAGAAAAGTGATTGTAAGTATATATTCCTGTaGAGGTGTACTCCACATTCT +
Preference number: 4 (lower is better)
Translates to: ANIFHEKLLWTESKKSDCKYIFL*RCTPHS
Trigger: AGAATGTGGAGTACACCTTCACAGGAATATATACTT...ACAATCACTTTTCTTACTTTCTGTCCACAGCAGTTTTTCATGGAAGATATTTGC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CCA 90 bp GCAAATATCTTCCATGAAAAACTGCTGTGGACAGAAAGTAAGAAAAGTGATTGTTCAGACTCAGACTTGTaGAATTCATCATCATCTTTC +
Preference number: 4 (lower is better)
Translates to: ANIFHEKLLWTESKKSDCSDSDL*NSSSSF
Trigger: GAAAGATGATGATGAATTCCACAAGTCTGAGTCTGA...ACAATCACTTTTCTTACTTTCTGTCCACAGCAGTTTTTCATGGAAGATATTTGC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR GCA 90 bp GCAAATATCTTCCATGAAAAACTGCTGTGGACAGAAAGTAAGAAAAGTGATTGTTTATATTCTTCTCTATaGTATGTTCCTCAAGGGAAG +
Preference number: 4 (lower is better)
Translates to: ANIFHEKLLWTESKKSDCLYSSL*YVPQGK
Trigger: CTTCCCTTGAGGAACATAGCATAGAGAAGAATATAA...ACAATCACTTTTCTTACTTTCTGTCCACAGCAGTTTTTCATGGAAGATATTTGC
34% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR GCA 90 bp GCAAATATCTTCCATGAAAAACTGCTGTGGACAGAAAGTAAGAAAAGTGATTGTATTTCTGGAATCAACTaGAGCATACATGATATCCAT +
Preference number: 4 (lower is better)
Translates to: ANIFHEKLLWTESKKSDCISGIN*SIHDIH
Trigger: ATGGATATCATGTATGCTGCAGTTGATTCCAGAAAT...ACAATCACTTTTCTTACTTTCTGTCCACAGCAGTTTTTCATGGAAGATATTTGC
34% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS CCA 90 bp GACACAGCCTTCAGTGAAGCAAGCTTCGGGCTCAAGGGTTTCTTCTaGTTCAATGACAGGCTGTTCCTCTGCAGGCGCCCCAATGTCTAC +
Preference number: 5 (lower is better)
Translates to: DTAFSEASFGLKGFF*FNDRLFLCRRPNVY
Trigger: GTAGACATTGGGGCGCCTGCAGAGGAACAGCCTGTCATTGAACCAGAAGAAACCCTTGAGCCCGAAGCTTGCTTCACTGAAGGCTGTGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000077489.12
ENSMUST00000094951.10
ENSMUST00000112366.8
ENSMUST00000112371.9
ENSMUST00000156865.3
ENSMUST00000200839.4
CDS-3UTR CAA 90 bp GAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTGGGTCCTCAAGGGAAGCGTaGGTGGGAGGCCACTGTACA +
Preference number: 5 (lower is better)
Translates to: EAGIYKGFFWSIRSARVGSSREA*VGGHCT
Trigger: TGTACAGTGGCCTCCCACCAACGCTTCCCTTGAGGA...CCCAACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CAA 90 bp CCCTTCCTGCTCGTGTTTCTCCACGATTGGCTTTGTCACCCGATCGTAGGAGGGTTCTTCCACGCTGATTaGACAGCACTTGAATCTCTG +
Preference number: 5 (lower is better)
Translates to: PFLLVFLHDWLCHPIVGGFFHAD*TALESL
Trigger: CAGAGATTCAAGTGCTGTCAAATCAGCGTGGAAGAA...CCCTCCTACGATCGGGTGACAAAGCCAATCGTGGAGAAACACGAGCAGGAAGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000156865.3
ENSMUST00000200839.4
CDS-3UTR CAA 90 bp GAGGAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTTCCTCAAGGGAAGCGTaGGTGGGAGGCCACTGTACA +
Preference number: 5 (lower is better)
Translates to: EEAGIYKGFFWSIRSARVSSREA*VGGHCT
Trigger: TGTACAGTGGCCTCCCACCAACGCTTCCCTTGAGGA...AACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CAA 90 bp GAGGAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTTCAGACCCCACATCCTaGGCTCGCCCTCTAAAGCTG +
Preference number: 5 (lower is better)
Translates to: EEAGIYKGFFWSIRSARVSDPTS*ARPLKL
Trigger: CAGCTTTAGAGGGCGAGCCAAGGATGTGGGGTCTGA...AACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CAA 90 bp GAGGAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTCTGTGCATCTTCCCATaGGCTGGAAACACCGCCAGC +
Preference number: 5 (lower is better)
Translates to: EEAGIYKGFFWSIRSARVLCIFP*AGNTAS
Trigger: GCTGGCGGTGTTTCCAGCCAATGGGAAGATGCACAG...AACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CAA 90 bp GAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTGGGTGCTGGCTATGCTCATaGCCCTTTGCCTCTGGGAAG +
Preference number: 5 (lower is better)
Translates to: EAGIYKGFFWSIRSARVGCWLCS*PFASGK
Trigger: CTTCCCAGAGGCAAAGGGCAATGAGCATAGCCAGCA...CCCAACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CAA 90 bp TTGTCACCCGATCGTAGGAGGGCGGACAAGCTGCTGTGGACATTGTCAGGTCAGGAGCTACTGCTTTCGTaGAGTTTCTCTTTGCTTTCT +
Preference number: 5 (lower is better)
Translates to: LSPDRRRADKLLWTLSGQELLLS*SFSLLS
Trigger: AGAAAGCAAAGAGAAACTCAACGAAAGCAGTAGCTC...CTGACCTGACAATGTCCACAGCAGCTTGTCCGCCCTCCTACGATCGGGTGACAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000156865.3
ENSMUST00000200839.4
CDS-3UTR CAA 90 bp TGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTTCTCGTCTGTGCATCTTCCCATaGGCTGGAAACACCGCCAGC +
Preference number: 5 (lower is better)
Translates to: WYRVQYISGGQLALYISRLCIFP*AGNTAS
Trigger: GCTGGCGGTGTTTCCAGCCAATGGGAAGATGCACAG...ACGAGAAATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CAA 90 bp TTGTCACCCGATCGTAGGAGGGCGGACAAGCTGCTGTGGACATTGTCAGGTCAGCTTAAATGTGGCAACTaGAAGCAAAGAAAGATACCC +
Preference number: 5 (lower is better)
Translates to: LSPDRRRADKLLWTLSGQLKCGN*KQRKIP
Trigger: GGGTATCTTTCTTTGCTTCAAGTTGCCACATTTAAG...CTGACCTGACAATGTCCACAGCAGCTTGTCCGCCCTCCTACGATCGGGTGACAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156865.3
CDS-3UTR CAA 90 bp GGGCGGACAAGCTGCTGTGGACATTGTCAGGTCAGTTTTCTCCGTAATAGAGTTTCCACCCCATCCAAGTaGGAGCAAGATTATCCCTCA +
Preference number: 5 (lower is better)
Translates to: GRTSCCGHCQVSFLRNRVSTPSK*EQDYPS
Trigger: TGAGGGATAATCTTGCTCCAACTTGGATGGGGTGGA...AACTCTATTACGGAGAAAACTGACCTGACAATGTCCACAGCAGCTTGTCCGCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000200839.4
CDS-3UTR CAA 90 bp GAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTGGGAGACTTGTTCTGCTATaGCGTCTTGGGGAGAACAGG +
Preference number: 5 (lower is better)
Translates to: EAGIYKGFFWSIRSARVGRLVLL*RLGENR
Trigger: CCTGTTCTCCCCAAGACGCAATAGCAGAACAAGTCT...CCCAACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CAA 90 bp CTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTTCAGACCCCACATCCTaGGCTCGCCCTCTAAAGCTG +
Preference number: 5 (lower is better)
Translates to: LQWYRVQYISGGQLALYISDPTS*ARPLKL
Trigger: CAGCTTTAGAGGGCGAGCCAAGGATGTGGGGTCTGA...AATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CAA 90 bp GTGTTTCTCCACGATTGGCTTTGTCACCCGATCGTAGGAGGGCGGACAAGCTGCTCGTTGAGTTTCTCTTaGCTTTCTTCTAGATCTGAT +
Preference number: 5 (lower is better)
Translates to: VFLHDWLCHPIVGGRTSCSLSFS*LSSRSD
Trigger: ATCAGATCTAGAAGAAAGCAAAGAGAAACTCAACGA...GCAGCTTGTCCGCCCTCCTACGATCGGGTGACAAAGCCAATCGTGGAGAAACAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000156865.3
ENSMUST00000200839.4
CDS-3UTR CAA 90 bp GAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTGGGTCTCAGTTTCAGTGGTaGTTCCCTCTGGCAGAAGCT +
Preference number: 5 (lower is better)
Translates to: EAGIYKGFFWSIRSARVGSQFQW*FPLAEA
Trigger: AGCTTCTGCCAGAGGGAACAACCACTGAAACTGAGA...CCCAACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077489.12
ENSMUST00000112371.9
CDS-3UTR CAA 90 bp TGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTTCTCGTTTCTGCTATTGCGTCTaGGGGAGAACAGGGAACCAC +
Preference number: 5 (lower is better)
Translates to: WYRVQYISGGQLALYISRFCYCV*GRTGNH
Trigger: GTGGTTCCCTGTTCTCCCCAAGACGCAATAGCAGAA...ACGAGAAATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CAA 90 bp CTAAACAAAGTGCAGGAGGAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTTCAGACCCCACATCCTaGGCTCGCCCTCTAAAGCTG +
Preference number: 5 (lower is better)
Translates to: LNKVQEEAGIYKGFFWSISDPTS*ARPLKL
Trigger: CAGCTTTAGAGGGCGAGCCAAGGATGTGGGGTCTGA...AATTGACCAAAAGAACCCTTTATAAATCCCCGCTTCCTCCTGCACTTTGTTTAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CAA 90 bp CTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTTGCTGGCTATGCTCATaGCCCTTTGCCTCTGGGAAG +
Preference number: 5 (lower is better)
Translates to: LQWYRVQYISGGQLALYICWLCS*PFASGK
Trigger: CTTCCCAGAGGCAAAGGGCAATGAGCATAGCCAGCA...AATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CAA 90 bp GGGCGGACAAGCTGCTGTGGACATTGTCAGGTCAGTTTTCTCCGTAATAGAGTTTTCTTCCACGCTGATTaGACAGCACTTGAATCTCTG +
Preference number: 5 (lower is better)
Translates to: GRTSCCGHCQVSFLRNRVFFHAD*TALESL
Trigger: CAGAGATTCAAGTGCTGTCAAATCAGCGTGGAAGAA...AACTCTATTACGGAGAAAACTGACCTGACAATGTCCACAGCAGCTTGTCCGCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000156865.3
ENSMUST00000200839.4
CDS-3UTR CAA 90 bp GAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTGGGTTTGGTTGTGGCAAATaGAGAGGGGGTTCTAGAGCA +
Preference number: 5 (lower is better)
Translates to: EAGIYKGFFWSIRSARVGFGCGK*RGGSRA
Trigger: TGCTCTAGAACCCCCTCTCAATTTGCCACAACCAAA...CCCAACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CAA 90 bp GAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTGGGCTGAAGTTTGTTTGGTaGTGGCAAATTGAGAGGGGG +
Preference number: 5 (lower is better)
Translates to: EAGIYKGFFWSIRSARVGLKFVW*WQIERG
Trigger: CCCCCTCTCAATTTGCCACAACCAAACAAACTTCAG...CCCAACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CAA 90 bp GCATCCACACTATCTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTCGTGTTTCTCCACGATaGGCTTTGTCACCCGATCGT +
Preference number: 5 (lower is better)
Translates to: ASTLSTMVQSTVYFRWTARVSPR*ALSPDR
Trigger: ACGATCGGGTGACAAAGCCAATCGTGGAGAAACACG...AGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAGATAGTGTGGATGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CAA 90 bp CAACACTCCCAGGTGACACACCGGGAAAAGAGTTCCTTTAGTCTATTTCCCAACACGATGAACACCAGGTaGATGCGTGACAAAATGCTT +
Preference number: 5 (lower is better)
Translates to: QHSQVTHREKSSFSLFPNTMNTR*MRDKML
Trigger: AAGCATTTTGTCACGCATCAACCTGGTGTTCATCGT...GTTGGGAAATAGACTAAAGGAACTCTTTTCCCGGTGTGTCACCTGGGAGTGTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CAA 90 bp GAGGAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTCTGAAGTTTGTTTGGTaGTGGCAAATTGAGAGGGGG +
Preference number: 5 (lower is better)
Translates to: EEAGIYKGFFWSIRSARVLKFVW*WQIERG
Trigger: CCCCCTCTCAATTTGCCACAACCAAACAAACTTCAG...AACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTCCTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CAA 90 bp CTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTCGTGTTTCTCCACGATaGGCTTTGTCACCCGATCGT +
Preference number: 5 (lower is better)
Translates to: LQWYRVQYISGGQLALYIRVSPR*ALSPDR
Trigger: ACGATCGGGTGACAAAGCCAATCGTGGAGAAACACG...AATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CAA 90 bp CTAAACAAAGTGCAGGAGGAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCTGCTGTGCAGCCTCTaGCTGCTTCTTAAGTTGCTC +
Preference number: 5 (lower is better)
Translates to: LNKVQEEAGIYKGFFWSILLCSL*LLLKLL
Trigger: GAGCAACTTAAGAAGCAGCAAGAGGCTGCACAGCAG...AATTGACCAAAAGAACCCTTTATAAATCCCCGCTTCCTCCTGCACTTTGTTTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CAA 90 bp CTAAACAAAGTGCAGGAGGAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTTTCTGCTATTGCGTCTaGGGGAGAACAGGGAACCAC +
Preference number: 5 (lower is better)
Translates to: LNKVQEEAGIYKGFFWSIFCYCV*GRTGNH
Trigger: GTGGTTCCCTGTTCTCCCCAAGACGCAATAGCAGAA...AATTGACCAAAAGAACCCTTTATAAATCCCCGCTTCCTCCTGCACTTTGTTTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CAA 90 bp GAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTGGGACAGCAATCTGCAGGTaGTTCATCTCATTGTCATCA +
Preference number: 5 (lower is better)
Translates to: EAGIYKGFFWSIRSARVGTAICR*FISLSS
Trigger: TGATGACAATGAGATGAACAACCTGCAGATTGCTGT...CCCAACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CAA 90 bp GAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTGGGGAGCTACTGCTTTCGTaGAGTTTCTCTTTGCTTTCT +
Preference number: 5 (lower is better)
Translates to: EAGIYKGFFWSIRSARVGELLLS*SFSLLS
Trigger: AGAAAGCAAAGAGAAACTCAACGAAAGCAGTAGCTC...CCCAACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CAA 90 bp CAACACTCCCAGGTGACACACCGGGAAAAGAGTTCCTTTAGTCTATTTCCCAACGAGCTACTGCTTTCGTaGAGTTTCTCTTTGCTTTCT +
Preference number: 5 (lower is better)
Translates to: QHSQVTHREKSSFSLFPNELLLS*SFSLLS
Trigger: AGAAAGCAAAGAGAAACTCAACGAAAGCAGTAGCTC...GTTGGGAAATAGACTAAAGGAACTCTTTTCCCGGTGTGTCACCTGGGAGTGTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CAA 90 bp GAGGAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTTTCTTCCACGCTGATTaGACAGCACTTGAATCTCTG +
Preference number: 5 (lower is better)
Translates to: EEAGIYKGFFWSIRSARVFFHAD*TALESL
Trigger: CAGAGATTCAAGTGCTGTCAAATCAGCGTGGAAGAA...AACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTCCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CAA 90 bp GAGGAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTTGCGTGACAAAATGCTaGTCACATAATCGCTCTGGT +
Preference number: 5 (lower is better)
Translates to: EEAGIYKGFFWSIRSARVCVTKC*SHNRSG
Trigger: ACCAGAGCGATTATGTGACAAGCATTTTGTCACGCA...AACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTCCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CAA 90 bp GCATCCACACTATCTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTTTGGTTGTGGCAAATaGAGAGGGGGTTCTAGAGCA +
Preference number: 5 (lower is better)
Translates to: ASTLSTMVQSTVYFRWTAFGCGK*RGGSRA
Trigger: TGCTCTAGAACCCCCTCTCAATTTGCCACAACCAAA...AGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAGATAGTGTGGATGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CAA 90 bp CAACACTCCCAGGTGACACACCGGGAAAAGAGTTCCTTTAGTCTATTTCCCAACTCTTCAGACTCAGACTaGTGGAATTCATCATCATCT +
Preference number: 5 (lower is better)
Translates to: QHSQVTHREKSSFSLFPNSSDSD*WNSSSS
Trigger: AGATGATGATGAATTCCACAAGTCTGAGTCTGAAGA...GTTGGGAAATAGACTAAAGGAACTCTTTTCCCGGTGTGTCACCTGGGAGTGTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CAA 90 bp CTAAACAAAGTGCAGGAGGAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTAGACTTGTTCTGCTATaGCGTCTTGGGGAGAACAGG +
Preference number: 5 (lower is better)
Translates to: LNKVQEEAGIYKGFFWSIRLVLL*RLGENR
Trigger: CCTGTTCTCCCCAAGACGCAATAGCAGAACAAGTCT...AATTGACCAAAAGAACCCTTTATAAATCCCCGCTTCCTCCTGCACTTTGTTTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CAA 90 bp CAACACTCCCAGGTGACACACCGGGAAAAGAGTTCCTTTAGTCTATTTCCCAACGTTCTTCTACTGTATTaGTTAAGATGCTGGCTATGC +
Preference number: 5 (lower is better)
Translates to: QHSQVTHREKSSFSLFPNVLLLY*LRCWLC
Trigger: GCATAGCCAGCATCTTAACAAATACAGTAGAAGAAC...GTTGGGAAATAGACTAAAGGAACTCTTTTCCCGGTGTGTCACCTGGGAGTGTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CAA 90 bp GAGGAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTACAGCAATCTGCAGGTaGTTCATCTCATTGTCATCA +
Preference number: 5 (lower is better)
Translates to: EEAGIYKGFFWSIRSARVTAICR*FISLSS
Trigger: TGATGACAATGAGATGAACAACCTGCAGATTGCTGT...AACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTCCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CAA 90 bp GAGGAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTGAGCTACTGCTTTCGTaGAGTTTCTCTTTGCTTTCT +
Preference number: 5 (lower is better)
Translates to: EEAGIYKGFFWSIRSARVELLLS*SFSLLS
Trigger: AGAAAGCAAAGAGAAACTCAACGAAAGCAGTAGCTC...AACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTCCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CAA 90 bp TGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTTCTCGTATTGGTGAAGTATGTTaGATAGCCATAGGCCACCCA +
Preference number: 5 (lower is better)
Translates to: WYRVQYISGGQLALYISRIGEVC*IAIGHP
Trigger: TGGGTGGCCTATGGCTATCAAACATACTTCACCAAT...ACGAGAAATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CAA 90 bp GCATCCACACTATCTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTATTGGTGAAGTATGTTaGATAGCCATAGGCCACCCA +
Preference number: 5 (lower is better)
Translates to: ASTLSTMVQSTVYFRWTAIGEVC*IAIGHP
Trigger: TGGGTGGCCTATGGCTATCAAACATACTTCACCAAT...AGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAGATAGTGTGGATGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CAA 90 bp TGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTTCTCGTTGCGTGACAAAATGCTaGTCACATAATCGCTCTGGT +
Preference number: 5 (lower is better)
Translates to: WYRVQYISGGQLALYISRCVTKC*SHNRSG
Trigger: ACCAGAGCGATTATGTGACAAGCATTTTGTCACGCA...ACGAGAAATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CAA 90 bp CTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTCTGAAGTTTGTTTGGTaGTGGCAAATTGAGAGGGGG +
Preference number: 5 (lower is better)
Translates to: LQWYRVQYISGGQLALYILKFVW*WQIERG
Trigger: CCCCCTCTCAATTTGCCACAACCAAACAAACTTCAG...AATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CAA 90 bp TGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTTCTCGTTTGCTGCTTCTTAAGTaGCTCCAACATCTGCTGAAA +
Preference number: 5 (lower is better)
Translates to: WYRVQYISGGQLALYISRLLLLK*LQHLLK
Trigger: TTTCAGCAGATGTTGGAGCAACTTAAGAAGCAGCAA...ACGAGAAATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CAA 90 bp GCAAATATCTTCCATGAAAAACTGCTGTGGACAGAAAGTAAGAAAAGTGATTGTTGCTGGCTATGCTCATaGCCCTTTGCCTCTGGGAAG +
Preference number: 5 (lower is better)
Translates to: ANIFHEKLLWTESKKSDCCWLCS*PFASGK
Trigger: CTTCCCAGAGGCAAAGGGCAATGAGCATAGCCAGCA...ACAATCACTTTTCTTACTTTCTGTCCACAGCAGTTTTTCATGGAAGATATTTGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CAA 90 bp GAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTGGGCAATTGTCTTTTCTGTaGTTTAGATCATCAAGTGGC +
Preference number: 5 (lower is better)
Translates to: EAGIYKGFFWSIRSARVGQLSFL*FRSSSG
Trigger: GCCACTTGATGATCTAAACAACAGAAAAGACAATTG...CCCAACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CAA 90 bp CTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTATTGGTGAAGTATGTTaGATAGCCATAGGCCACCCA +
Preference number: 5 (lower is better)
Translates to: LQWYRVQYISGGQLALYIIGEVC*IAIGHP
Trigger: TGGGTGGCCTATGGCTATCAAACATACTTCACCAAT...AATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CAA 90 bp CTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTACGATGAACACCAGGTaGATGCGTGACAAAATGCTT +
Preference number: 5 (lower is better)
Translates to: LQWYRVQYISGGQLALYITMNTR*MRDKML
Trigger: AAGCATTTTGTCACGCATCAACCTGGTGTTCATCGT...AATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS GCA 90 bp TGGATTCTTCTAGTTCTTCTACTGTATTTGTTAAGATGCTGGCTATaGTCATTGCCCTTTGCCTCTGGGAAGGATCTTCTAGAAAGTCCA +
Preference number: 5 (lower is better)
Translates to: WILLVLLLYLLRCWL*SLPFASGKDLLESP
Trigger: TGGACTTTCTAGAAGATCCTTCCCAGAGGCAAAGGGCAATGAGCATAGCCAGCATCTTAACAAATACAGTAGAAGAACTAGAAGAATCCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077489.12
ENSMUST00000094951.10
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CAA 90 bp GCATCCACACTATCTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTCTTCAGACTCAGACTaGTGGAATTCATCATCATCT +
Preference number: 5 (lower is better)
Translates to: ASTLSTMVQSTVYFRWTASSDSD*WNSSSS
Trigger: AGATGATGATGAATTCCACAAGTCTGAGTCTGAAGA...AGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAGATAGTGTGGATGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CAA 90 bp GCATCCACACTATCTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTGTTCTTCTACTGTATTaGTTAAGATGCTGGCTATGC +
Preference number: 5 (lower is better)
Translates to: ASTLSTMVQSTVYFRWTAVLLLY*LRCWLC
Trigger: GCATAGCCAGCATCTTAACAAATACAGTAGAAGAAC...AGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAGATAGTGTGGATGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CAA 90 bp TGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTTCTCGTGTTCTTCTACTGTATTaGTTAAGATGCTGGCTATGC +
Preference number: 5 (lower is better)
Translates to: WYRVQYISGGQLALYISRVLLLY*LRCWLC
Trigger: GCATAGCCAGCATCTTAACAAATACAGTAGAAGAAC...ACGAGAAATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CAA 90 bp CTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTACAGCAATCTGCAGGTaGTTCATCTCATTGTCATCA +
Preference number: 5 (lower is better)
Translates to: LQWYRVQYISGGQLALYITAICR*FISLSS
Trigger: TGATGACAATGAGATGAACAACCTGCAGATTGCTGT...AATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CAA 90 bp CTAAACAAAGTGCAGGAGGAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTACGATGAACACCAGGTaGATGCGTGACAAAATGCTT +
Preference number: 5 (lower is better)
Translates to: LNKVQEEAGIYKGFFWSITMNTR*MRDKML
Trigger: AAGCATTTTGTCACGCATCAACCTGGTGTTCATCGT...AATTGACCAAAAGAACCCTTTATAAATCCCCGCTTCCTCCTGCACTTTGTTTAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CAA 90 bp GCATCCACACTATCTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTGCCCCACCTTTGAGTTaGTTCTTATTGTATGTGAAT +
Preference number: 5 (lower is better)
Translates to: ASTLSTMVQSTVYFRWTAAPPLS*FLLYVN
Trigger: ATTCACATACAATAAGAACAAACTCAAAGGTGGGGC...AGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAGATAGTGTGGATGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CAA 90 bp GAGGAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCGCTCTGCTAGGGTTAGATTAGCCCCACCTTaGAGTTTGTTCTTATTGTAT +
Preference number: 5 (lower is better)
Translates to: EEAGIYKGFFWSIRSARVRLAPP*SLFLLY
Trigger: ATACAATAAGAACAAACTCAAAGGTGGGGCTAATCT...AACCCTAGCAGAGCGAATTGACCAAAAGAACCCTTTATAAATCCCCGCTTCCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CAA 90 bp CTAAACAAAGTGCAGGAGGAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTTTGCTGCTTCTTAAGTaGCTCCAACATCTGCTGAAA +
Preference number: 5 (lower is better)
Translates to: LNKVQEEAGIYKGFFWSILLLLK*LQHLLK
Trigger: TTTCAGCAGATGTTGGAGCAACTTAAGAAGCAGCAA...AATTGACCAAAAGAACCCTTTATAAATCCCCGCTTCCTCCTGCACTTTGTTTAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CAA 90 bp CTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTTCTTCAGACTCAGACTaGTGGAATTCATCATCATCT +
Preference number: 5 (lower is better)
Translates to: LQWYRVQYISGGQLALYISSDSD*WNSSSS
Trigger: AGATGATGATGAATTCCACAAGTCTGAGTCTGAAGA...AATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CAA 90 bp GCAAATATCTTCCATGAAAAACTGCTGTGGACAGAAAGTAAGAAAAGTGATTGTAGACTTGTTCTGCTATaGCGTCTTGGGGAGAACAGG +
Preference number: 5 (lower is better)
Translates to: ANIFHEKLLWTESKKSDCRLVLL*RLGENR
Trigger: CCTGTTCTCCCCAAGACGCAATAGCAGAACAAGTCT...ACAATCACTTTTCTTACTTTCTGTCCACAGCAGTTTTTCATGGAAGATATTTGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CAA 90 bp TGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTTCTCGTCAATTGTCTTTTCTGTaGTTTAGATCATCAAGTGGC +
Preference number: 5 (lower is better)
Translates to: WYRVQYISGGQLALYISRQLSFL*FRSSSG
Trigger: GCCACTTGATGATCTAAACAACAGAAAAGACAATTG...ACGAGAAATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CAA 90 bp GCATCCACACTATCTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTCGTTGAGTTTCTCTTaGCTTTCTTCTAGATCTGAT +
Preference number: 5 (lower is better)
Translates to: ASTLSTMVQSTVYFRWTASLSFS*LSSRSD
Trigger: ATCAGATCTAGAAGAAAGCAAAGAGAAACTCAACGA...AGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAGATAGTGTGGATGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CAA 90 bp TGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTTCTCGTTCGTTGAGTTTCTCTTaGCTTTCTTCTAGATCTGAT +
Preference number: 5 (lower is better)
Translates to: WYRVQYISGGQLALYISRSLSFS*LSSRSD
Trigger: ATCAGATCTAGAAGAAAGCAAAGAGAAACTCAACGA...ACGAGAAATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CAA 90 bp GCATCCACACTATCTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTAGATTAGCCCCACCTTaGAGTTTGTTCTTATTGTAT +
Preference number: 5 (lower is better)
Translates to: ASTLSTMVQSTVYFRWTARLAPP*SLFLLY
Trigger: ATACAATAAGAACAAACTCAAAGGTGGGGCTAATCT...AGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAGATAGTGTGGATGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CAA 90 bp CTACAATGGTACAGAGTACAGTATATTTCCGGTGGACAGCTTGCACTCTACATTCAATTGTCTTTTCTGTaGTTTAGATCATCAAGTGGC +
Preference number: 5 (lower is better)
Translates to: LQWYRVQYISGGQLALYIQLSFL*FRSSSG
Trigger: GCCACTTGATGATCTAAACAACAGAAAAGACAATTG...AATGTAGAGTGCAAGCTGTCCACCGGAAATATACTGTACTCTGTACCATTGTAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CAA 90 bp GTCAGTTTTCTCCGTAATAGAGTTTTCGTTTATTCTGTCAATGAGCATGTCTTCATTGGTGAAGTATGTTaGATAGCCATAGGCCACCCA +
Preference number: 5 (lower is better)
Translates to: VSFLRNRVFVYSVNEHVFIGEVC*IAIGHP
Trigger: TGGGTGGCCTATGGCTATCAAACATACTTCACCAAT...GAAGACATGCTCATTGACAGAATAAACGAAAACTCTATTACGGAGAAAACTGAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000156865.3
ENSMUST00000200839.4
CDS-3UTR CAA 90 bp CTAAACAAAGTGCAGGAGGAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTCTTAAATGTGGCAACTaGAAGCAAAGAAAGATACCC +
Preference number: 5 (lower is better)
Translates to: LNKVQEEAGIYKGFFWSILKCGN*KQRKIP
Trigger: GGGTATCTTTCTTTGCTTCAAGTTGCCACATTTAAG...AATTGACCAAAAGAACCCTTTATAAATCCCCGCTTCCTCCTGCACTTTGTTTAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CAA 90 bp CTAAACAAAGTGCAGGAGGAAGCGGGGATTTATAAAGGGTTCTTTTGGTCAATTGCCCCACCTTTGAGTTaGTTCTTATTGTATGTGAAT +
Preference number: 5 (lower is better)
Translates to: LNKVQEEAGIYKGFFWSIAPPLS*FLLYVN
Trigger: ATTCACATACAATAAGAACAAACTCAAAGGTGGGGC...AATTGACCAAAAGAACCCTTTATAAATCCCCGCTTCCTCCTGCACTTTGTTTAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CAA 90 bp GCAAATATCTTCCATGAAAAACTGCTGTGGACAGAAAGTAAGAAAAGTGATTGTTTCTTCCACGCTGATTaGACAGCACTTGAATCTCTG +
Preference number: 5 (lower is better)
Translates to: ANIFHEKLLWTESKKSDCFFHAD*TALESL
Trigger: CAGAGATTCAAGTGCTGTCAAATCAGCGTGGAAGAA...ACAATCACTTTTCTTACTTTCTGTCCACAGCAGTTTTTCATGGAAGATATTTGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
ENSMUST00000200839.4
CDS-3UTR CAA 90 bp GCAAATATCTTCCATGAAAAACTGCTGTGGACAGAAAGTAAGAAAAGTGATTGTTGCGTGACAAAATGCTaGTCACATAATCGCTCTGGT +
Preference number: 5 (lower is better)
Translates to: ANIFHEKLLWTESKKSDCCVTKC*SHNRSG
Trigger: ACCAGAGCGATTATGTGACAAGCATTTTGTCACGCA...ACAATCACTTTTCTTACTTTCTGTCCACAGCAGTTTTTCATGGAAGATATTTGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CAA 90 bp GCAAATATCTTCCATGAAAAACTGCTGTGGACAGAAAGTAAGAAAAGTGATTGTTCAGTGGTTGTTCCATaGTCATCAGTAGCTGGCTTA +
Preference number: 5 (lower is better)
Translates to: ANIFHEKLLWTESKKSDCSVVVP*SSVAGL
Trigger: TAAGCCAGCTACTGATGACAATGGAACAACCACTGA...ACAATCACTTTTCTTACTTTCTGTCCACAGCAGTTTTTCATGGAAGATATTTGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112366.8
CDS-3UTR CAA 90 bp GCAAATATCTTCCATGAAAAACTGCTGTGGACAGAAAGTAAGAAAAGTGATTGTGAGCTACTGCTTTCGTaGAGTTTCTCTTTGCTTTCT +
Preference number: 5 (lower is better)
Translates to: ANIFHEKLLWTESKKSDCELLLS*SFSLLS
Trigger: AGAAAGCAAAGAGAAACTCAACGAAAGCAGTAGCTC...ACAATCACTTTTCTTACTTTCTGTCCACAGCAGTTTTTCATGGAAGATATTTGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
ENSMUST00000200839.4
CDS-3UTR CAA 90 bp GTCAGTTTTCTCCGTAATAGAGTTTTCGTTTATTCTGTCAATGAGCATGTCTTCCAATTGTCTTTTCTGTaGTTTAGATCATCAAGTGGC +
Preference number: 5 (lower is better)
Translates to: VSFLRNRVFVYSVNEHVFQLSFL*FRSSSG
Trigger: GCCACTTGATGATCTAAACAACAGAAAAGACAATTG...GAAGACATGCTCATTGACAGAATAAACGAAAACTCTATTACGGAGAAAACTGAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000156865.3
CDS-3UTR CAA 90 bp GTCAGTTTTCTCCGTAATAGAGTTTTCGTTTATTCTGTCAATGAGCATGTCTTCTCGTTGAGTTTCTCTTaGCTTTCTTCTAGATCTGAT +
Preference number: 5 (lower is better)
Translates to: VSFLRNRVFVYSVNEHVFSLSFS*LSSRSD
Trigger: ATCAGATCTAGAAGAAAGCAAAGAGAAACTCAACGA...GAAGACATGCTCATTGACAGAATAAACGAAAACTCTATTACGGAGAAAACTGAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000156865.3
ENSMUST00000200839.4
CDS-3UTR CAA 90 bp GCAAATATCTTCCATGAAAAACTGCTGTGGACAGAAAGTAAGAAAAGTGATTGTCTTAAATGTGGCAACTaGAAGCAAAGAAAGATACCC +
Preference number: 5 (lower is better)
Translates to: ANIFHEKLLWTESKKSDCLKCGN*KQRKIP
Trigger: GGGTATCTTTCTTTGCTTCAAGTTGCCACATTTAAG...ACAATCACTTTTCTTACTTTCTGTCCACAGCAGTTTTTCATGGAAGATATTTGC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS-3UTR CAA 90 bp GCAAATATCTTCCATGAAAAACTGCTGTGGACAGAAAGTAAGAAAAGTGATTGTGCCCCACCTTTGAGTTaGTTCTTATTGTATGTGAAT +
Preference number: 5 (lower is better)
Translates to: ANIFHEKLLWTESKKSDCAPPLS*FLLYVN
Trigger: ATTCACATACAATAAGAACAAACTCAAAGGTGGGGC...ACAATCACTTTTCTTACTTTCTGTCCACAGCAGTTTTTCATGGAAGATATTTGC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000077489.12
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS TCA 72 bp GAGCCTGCCTGCTGCACTGGGCTCCCTGGAATGTTCTaGGGCTGTTGTAGCCGCTGCCTGCTGTGCAGCCTC +
Preference number: 6 (lower is better)
Translates to: EPACCTGLPGMF*GCCSRCLLCSL
Trigger: GAGGCTGCACAGCAGGCAGCGGCTACAACAGCCTCAGAACATTCCAGGGAGCCCAGTGCAGCAGGCAGGCTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000077489.12
ENSMUST00000094951.10
ENSMUST00000112366.8
ENSMUST00000112371.9
ENSMUST00000138910.3
CDS GCA 72 bp TTCGGGAGGACCTGCTGGTCTGGCTCAGGTTACTGTTaGGTCGCTCTCCGTGTCTTCGGGGAACGAACAGTG +
Preference number: 6 (lower is better)
Translates to: FGRTCWSGSGYC*VALRVFGERTV
Trigger: CACTGTTCGTTCCCCGAAGACACGGAGAGCGACGCAACAGTAACCTGAGCCAGACCAGCAGGTCCTCCCGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077489.12
ENSMUST00000094951.10
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS CAA 72 bp GCTGAGGGGAGGAACCACCGCTCCACCCCATCCAAGTaGGAGCAAGATTATCCCTCATCCCTTCAAATCGTG +
Preference number: 6 (lower is better)
Translates to: AEGRNHRSTPSK*EQDYPSSLQIV
Trigger: CACGATTTGAAGGGATGAGGGATAATCTTGCTCCAACTTGGATGGGGTGGAGCGGTGGTTCCTCCCCTCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000200839.4
CDS TCA 72 bp AGCAAGCTTCGGGCTCAAGGGTTTCTTCTGGTTCAATaGCAGGCTGTTCCTCTGCAGGCGCCCCAATGTCTA +
Preference number: 6 (lower is better)
Translates to: SKLRAQGFLLVQ*QAVPLQAPQCL
Trigger: TAGACATTGGGGCGCCTGCAGAGGAACAGCCTGTCATTGAACCAGAAGAAACCCTTGAGCCCGAAGCTTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000077489.12
ENSMUST00000094951.10
ENSMUST00000112366.8
ENSMUST00000112371.9
ENSMUST00000156865.3
ENSMUST00000200839.4
CDS TCA 72 bp CTCTGCAGGCGCCCCAATGTCTACTGTGCTTCCCTCTaGGGAGCTACTGCTTTCGTTGAGTTTCTCTTTGCT +
Preference number: 6 (lower is better)
Translates to: LCRRPNVYCASL*GATAFVEFLFA
Trigger: AGCAAAGAGAAACTCAACGAAAGCAGTAGCTCCTCAGAGGGAAGCACAGTAGACATTGGGGCGCCTGCAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000077489.12
ENSMUST00000094951.10
ENSMUST00000112366.8
ENSMUST00000112371.9
ENSMUST00000156865.3
ENSMUST00000200839.4
CDS CAA 72 bp ATGAGCATATTCAGTGTGGGCCAAGACTTTGCCAACTaGAACACTCGGAGCAGTCGAAATGAACGGAGAACT +
Preference number: 6 (lower is better)
Translates to: MSIFSVGQDFAN*NTRSSRNERRT
Trigger: AGTTCTCCGTTCATTTCGACTGCTCCGAGTGTTCAAGTTGGCAAAGTCTTGGCCCACACTGAATATGCTCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077489.12
ENSMUST00000094951.10
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS GCA 72 bp TGGATTCTTCTAGTTCTTCTACTGTATTTGTTAAGATaGTGGCTATGCTCATTGCCCTTTGCCTCTGGGAAG +
Preference number: 6 (lower is better)
Translates to: WILLVLLLYLLR*WLCSLPFASGK
Trigger: CTTCCCAGAGGCAAAGGGCAATGAGCATAGCCAGCATCTTAACAAATACAGTAGAAGAACTAGAAGAATCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077489.12
ENSMUST00000094951.10
ENSMUST00000112366.8
ENSMUST00000112371.9
CDS CCA 72 bp ATTCTTCTAGTTCTTCTACTGTATTTGTTAAGATGCTaGCTATGCTCATTGCCCTTTGCCTCTGGGAAGGAT +
Preference number: 6 (lower is better)
Translates to: ILLVLLLYLLRC*LCSLPFASGKD
Trigger: ATCCTTCCCAGAGGCAAAGGGCAATGAGCATAGCCAGCATCTTAACAAATACAGTAGAAGAACTAGAAGAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077489.12
ENSMUST00000094951.10
ENSMUST00000112366.8
ENSMUST00000112371.9