RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SCN11A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000034115

Ensembl transcript IDs: ENSMUST00000070617.8, ENSMUST00000215718.2

Found 277 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ACTGAACAGACATGTGACCTTTCCTTCTCGTTTCTTTACATAATTTaGACTGTCCTTCAGGCCTTCCGTTACTGTGGATGTCCTTGGCAG +
Preference number: 1 (lower is better)
Translates to: TEQTCDLSFSFLYII*TVLQAFRYCGCPWQ
Trigger: CTGCCAAGGACATCCACAGTAACGGAAGGCCTGAAGGACAGTTCAAATTATGTAAAGAAACGAGAAGGAAAGGTCACATGTCTGTTCAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
3UTR CCA 90 bp GTTTCTTTACATAATTTGAACTGTCCTTCAGGCCTTCCGTTACTGTaGATGTCCTTGGCAGTCCTTTCTAACATGTTCCGACGTTCAATC +
Preference number: 1 (lower is better)
Translates to: VSLHNLNCPSGLPLL*MSLAVLSNMFRRSI
Trigger: GATTGAACGTCGGAACATGTTAGAAAGGACTGCCAAGGACATCCACAGTAACGGAAGGCCTGAAGGACAGTTCAAATTATGTAAAGAAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
3UTR CCA 90 bp TGGCAGGGTTTTGACTTCTCACTTAACATGCAAAGGAGCTACATGTaGCAGGTCACATACTTAAAACTGAACAGACATGTGACCTTTCCT +
Preference number: 1 (lower is better)
Translates to: WQGFDFSLNMQRSYM*QVTYLKLNRHVTFP
Trigger: AGGAAAGGTCACATGTCTGTTCAGTTTTAAGTATGTGACCTGCCACATGTAGCTCCTTTGCATGTTAAGTGAGAAGTCAAAACCCTGCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
3UTR CCA 90 bp ATCCGCAGCACTGGTAGAAACACCTGCAACAAAGCTATTTACTTATaGCAGGGTTTTGACTTCTCACTTAACATGCAAAGGAGCTACATG +
Preference number: 1 (lower is better)
Translates to: IRSTGRNTCNKAIYL*QGFDFSLNMQRSYM
Trigger: CATGTAGCTCCTTTGCATGTTAAGTGAGAAGTCAAAACCCTGCCATAAGTAAATAGCTTTGTTGCAGGTGTTTCTACCAGTGCTGCGGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
3UTR-3UTR TCA 90 bp GGTTTTGACTTCTCACTTAACATGCAAAGGAGCTACATGTGGCAGGTCACATACCTGGGGGCTGAGCTGTaGGGCTGTGAGGTAGGCGTG +
Preference number: 2 (lower is better)
Translates to: GFDFSLNMQRSYMWQVTYLGAEL*GCEVGV
Trigger: CACGCCTACCTCACAGCCTCACAGCTCAGCCCCCAG...GTATGTGACCTGCCACATGTAGCTCCTTTGCATGTTAAGTGAGAAGTCAAAACC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
3UTR-3UTR CCA 90 bp AGGTTTGAGCCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAATTGTTCGCCAGAGGCTaGGGGCTGAGCTGTGAGGCT +
Preference number: 2 (lower is better)
Translates to: RFEPYTQIRSTGRNTCNKLFARG*GLSCEA
Trigger: AGCCTCACAGCTCAGCCCCCAGCCTCTGGCGAACAA...TTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGGCTCAAACCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
3UTR-3UTR TCA 90 bp CTATTTACTTATGGCAGGGTTTTGACTTCTCACTTAACATGCAAAGGAGCTACACTGGGGGCTGAGCTGTaGGGCTGTGAGGTAGGCGTG +
Preference number: 2 (lower is better)
Translates to: LFTYGRVLTSHLTCKGATLGAEL*GCEVGV
Trigger: CACGCCTACCTCACAGCCTCACAGCTCAGCCCCCAG...TGTAGCTCCTTTGCATGTTAAGTGAGAAGTCAAAACCCTGCCATAAGTAAATAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
3UTR-3UTR CCA 90 bp TCACTTAACATGCAAAGGAGCTACATGTGGCAGGTCACATACTTAAAACTGAACTTGTTCGCCAGAGGCTaGGGGCTGAGCTGTGAGGCT +
Preference number: 2 (lower is better)
Translates to: SLNMQRSYMWQVTYLKLNLFARG*GLSCEA
Trigger: AGCCTCACAGCTCAGCCCCCAGCCTCTGGCGAACAA...GTTCAGTTTTAAGTATGTGACCTGCCACATGTAGCTCCTTTGCATGTTAAGTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
3UTR-3UTR TCA 90 bp TTGAGCCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAAGCTATTTCTTTACATAATTTaGACTGTCCTTCAGGCCTTC +
Preference number: 2 (lower is better)
Translates to: LSHTPKSAALVETPATKLFLYII*TVLQAF
Trigger: GAAGGCCTGAAGGACAGTTCAAATTATGTAAAGAAA...TAGCTTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGGCTCAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
3UTR-3UTR TCA 90 bp GACTTCTCACTTAACATGCAAAGGAGCTACATGTGGCAGGTCACATACTTAAAATTTCTTTACATAATTTaGACTGTCCTTCAGGCCTTC +
Preference number: 2 (lower is better)
Translates to: DFSLNMQRSYMWQVTYLKFLYII*TVLQAF
Trigger: GAAGGCCTGAAGGACAGTTCAAATTATGTAAAGAAA...TTTTAAGTATGTGACCTGCCACATGTAGCTCCTTTGCATGTTAAGTGAGAAGTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
3UTR-3UTR GCA 90 bp TATGTATTTATTTGTCAAACACCTAGGACAGAGATCAGAGCTTCTGAAAGTTGGACTGGTAGAAACACCTaGAACAAAGCTATTTACTTA +
Preference number: 2 (lower is better)
Translates to: YVFICQTPRTEIRASESWTGRNT*NKAIYL
Trigger: TAAGTAAATAGCTTTGTTGCAGGTGTTTCTACCAGT...CCAACTTTCAGAAGCTCTGATCTCTGTCCTAGGTGTTTGACAAATAAATACATA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
3UTR CCA 72 bp CAAACACCTAGGACAGAGATCAGAGCTTCTGAAAGTTaGGGTGCTGACAAGTCAGAGTCATGCTTTCAGGTT +
Preference number: 3 (lower is better)
Translates to: QTPRTEIRASES*GADKSESCFQV
Trigger: AACCTGAAAGCATGACTCTGACTTGTCAGCACCCCAACTTTCAGAAGCTCTGATCTCTGTCCTAGGTGTTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
3UTR-3UTR CAA 90 bp GACTTCTCACTTAACATGCAAAGGAGCTACATGTGGCAGGTCACATACTTAAAATTACTGTGGATGTCCTaGGCAGTCCTTTCTAACATG +
Preference number: 3 (lower is better)
Translates to: DFSLNMQRSYMWQVTYLKLLWMS*AVLSNM
Trigger: CATGTTAGAAAGGACTGCCAAGGACATCCACAGTAA...TTTTAAGTATGTGACCTGCCACATGTAGCTCCTTTGCATGTTAAGTGAGAAGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
3UTR-3UTR CAA 90 bp GTATTTATTTGTCAAACACCTAGGACAGAGATCAGAGCTTCTGAAAGTTGGGGTTTACTGTGGATGTCCTaGGCAGTCCTTTCTAACATG +
Preference number: 3 (lower is better)
Translates to: VFICQTPRTEIRASESWGLLWMS*AVLSNM
Trigger: CATGTTAGAAAGGACTGCCAAGGACATCCACAGTAA...ACCCCAACTTTCAGAAGCTCTGATCTCTGTCCTAGGTGTTTGACAAATAAATAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
3UTR TCA 72 bp ACATGTGACCTTTCCTTCTCGTTTCTTTACATAATTTaGACTGTCCTTCAGGCCTTCCGTTACTGTGGATGT +
Preference number: 3 (lower is better)
Translates to: TCDLSFSFLYII*TVLQAFRYCGC
Trigger: ACATCCACAGTAACGGAAGGCCTGAAGGACAGTTCAAATTATGTAAAGAAACGAGAAGGAAAGGTCACATGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
3UTR-3UTR CAA 90 bp GGTTTTGACTTCTCACTTAACATGCAAAGGAGCTACATGTGGCAGGTCACATACGTTTCTTTACATAATTaGAACTGTCCTTCAGGCCTT +
Preference number: 3 (lower is better)
Translates to: GFDFSLNMQRSYMWQVTYVSLHN*NCPSGL
Trigger: AAGGCCTGAAGGACAGTTCAAATTATGTAAAGAAAC...GTATGTGACCTGCCACATGTAGCTCCTTTGCATGTTAAGTGAGAAGTCAAAACC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
3UTR CCA 72 bp TTTGACTTCTCACTTAACATGCAAAGGAGCTACATGTaGCAGGTCACATACTTAAAACTGAACAGACATGTG +
Preference number: 3 (lower is better)
Translates to: FDFSLNMQRSYM*QVTYLKLNRHV
Trigger: CACATGTCTGTTCAGTTTTAAGTATGTGACCTGCCACATGTAGCTCCTTTGCATGTTAAGTGAGAAGTCAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
3UTR CCA 72 bp ACTGGTAGAAACACCTGCAACAAAGCTATTTACTTATaGCAGGGTTTTGACTTCTCACTTAACATGCAAAGG +
Preference number: 3 (lower is better)
Translates to: TGRNTCNKAIYL*QGFDFSLNMQR
Trigger: CCTTTGCATGTTAAGTGAGAAGTCAAAACCCTGCCATAAGTAAATAGCTTTGTTGCAGGTGTTTCTACCAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
3UTR-3UTR CAA 90 bp GTATTTATTTGTCAAACACCTAGGACAGAGATCAGAGCTTCTGAAAGTTGGGGTGTTTCTTTACATAATTaGAACTGTCCTTCAGGCCTT +
Preference number: 3 (lower is better)
Translates to: VFICQTPRTEIRASESWGVSLHN*NCPSGL
Trigger: AAGGCCTGAAGGACAGTTCAAATTATGTAAAGAAAC...ACCCCAACTTTCAGAAGCTCTGATCTCTGTCCTAGGTGTTTGACAAATAAATAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR TCA 90 bp TTGAGCCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAAGCTAGGGAGGTCACAGGCCTaGGCTTCCTCACTAGGCTGT +
Preference number: 4 (lower is better)
Translates to: LSHTPKSAALVETPATKLGRSQA*ASSLGC
Trigger: ACAGCCTAGTGAGGAAGCTCAGGCCTGTGACCTCCC...TAGCTTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGGCTCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CCA 90 bp CCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAAGCTATTTACCTCTTCTTTTGCCAGTaGGGCCAGTGGAGCCCCGGC +
Preference number: 4 (lower is better)
Translates to: PYTQIRSTGRNTCNKAIYLFFCQ*GQWSPG
Trigger: GCCGGGGCTCCACTGGCCCCACTGGCAAAAGAAGAG...GTAAATAGCTTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CCA 90 bp CCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAAGCTATTTACGGCTGGGGAGCCGCTTaGTCTTCAGAGGGAGGTCAC +
Preference number: 4 (lower is better)
Translates to: PYTQIRSTGRNTCNKAIYGWGAA*SSEGGH
Trigger: GTGACCTCCCTCTGAAGACCAAGCGGCTCCCCAGCC...GTAAATAGCTTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CCA 90 bp TTTGAGCCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAAGCTCGTGGTCATCTGGGCTaGGGAGCCGCTTGGTCTTCA +
Preference number: 4 (lower is better)
Translates to: FEPYTQIRSTGRNTCNKARGHLG*GAAWSS
Trigger: TGAAGACCAAGCGGCTCCCCAGCCCAGATGACCACG...AGCTTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGGCTCAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CCA 90 bp CCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAAGCTATTTACCGTGGTCATCTGGGCTaGGGAGCCGCTTGGTCTTCA +
Preference number: 4 (lower is better)
Translates to: PYTQIRSTGRNTCNKAIYRGHLG*GAAWSS
Trigger: TGAAGACCAAGCGGCTCCCCAGCCCAGATGACCACG...GTAAATAGCTTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR TCA 90 bp GGTAGAAACACCTGCAACAAAGCTATTTACTTATGGCAGGGTTTTGACTTCTCAGCCTTTAGGTCGAGCTaGGGCCGAGGCTGGGGCTCA +
Preference number: 4 (lower is better)
Translates to: GRNTCNKAIYLWQGFDFSAFRSS*GRGWGS
Trigger: TGAGCCCCAGCCTCGGCCTCAGCTCGACCTAAAGGC...TGAGAAGTCAAAACCCTGCCATAAGTAAATAGCTTTGTTGCAGGTGTTTCTACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR TCA 90 bp TTGAGCCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAAGCTACAGACACCACCACAATaGGGAAATCGAGCCAGCACC +
Preference number: 4 (lower is better)
Translates to: LSHTPKSAALVETPATKLQTPPQ*GNRAST
Trigger: GGTGCTGGCTCGATTTCCTCATTGTGGTGGTGTCTG...TAGCTTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGGCTCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR GCA 90 bp AGGTTTGAGCCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAAATCGTCCTCTTCTTTTaGCAGTGGGGCCAGTGGAGC +
Preference number: 4 (lower is better)
Translates to: RFEPYTQIRSTGRNTCNKIVLFF*QWGQWS
Trigger: GCTCCACTGGCCCCACTGGCAAAAGAAGAGGACGAT...TTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGGCTCAAACCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR GCA 90 bp TTGAGCCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAAGCTATTCAAACTGAGACAGTaGCCGCAGAGGTCTCAGCGC +
Preference number: 4 (lower is better)
Translates to: LSHTPKSAALVETPATKLFKLRQ*PQRSQR
Trigger: GCGCTGAGACCTCTGCGGGCACTGTCTCAGTTTGAA...TAGCTTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGGCTCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CCA 90 bp TTGAGCCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAAGCTATCAGGGGCCTTGGGATaGGCTTTTGAGGCTTCTTGG +
Preference number: 4 (lower is better)
Translates to: LSHTPKSAALVETPATKLSGALG*AFEASW
Trigger: CCAAGAAGCCTCAAAAGCCCATCCCAAGGCCCCTGA...TAGCTTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGGCTCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR TCA 90 bp CCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAAGCTATTTACTCAGCACAAAGACGATaGCACACAGCGGGGAGCCTT +
Preference number: 4 (lower is better)
Translates to: PYTQIRSTGRNTCNKAIYSAQRR*HTAGSL
Trigger: AAGGCTCCCCGCTGTGTGTCATCGTCTTTGTGCTGA...GTAAATAGCTTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR TCA 90 bp GGTTTTGACTTCTCACTTAACATGCAAAGGAGCTACATGTGGCAGGTCACATACCCAAGCGGACAATCCTaGAGAGTGTGGGCGGGAAGA +
Preference number: 4 (lower is better)
Translates to: GFDFSLNMQRSYMWQVTYPSGQS*RVWAGR
Trigger: TCTTCCCGCCCACACTCTTCAGGATTGTCCGCTTGG...GTATGTGACCTGCCACATGTAGCTCCTTTGCATGTTAAGTGAGAAGTCAAAACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR GCA 90 bp AGGTTTGAGCCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAATGGAGGGGGTCCACGTaGTCATCAAAGAGTTCTACG +
Preference number: 4 (lower is better)
Translates to: RFEPYTQIRSTGRNTCNKWRGST*SSKSST
Trigger: CGTAGAACTCTTTGATGAGCACGTGGACCCCCTCCA...TTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGGCTCAAACCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR GCA 90 bp TTTGAGCCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAAGCTTGGGCGGGAAGACGTTaGTGTTCTCCAAGCCAGAAA +
Preference number: 4 (lower is better)
Translates to: FEPYTQIRSTGRNTCNKAWAGRR*CSPSQK
Trigger: TTTCTGGCTTGGAGAACAGCAACGTCTTCCCGCCCA...AGCTTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGGCTCAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CCA 90 bp AGGTTTGAGCCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAACCTGGTCTCTCCTTCTaGGTTCCCATCCTTTTCCTC +
Preference number: 4 (lower is better)
Translates to: RFEPYTQIRSTGRNTCNKPGLSF*VPILFL
Trigger: GAGGAAAAGGATGGGAACCCAGAAGGAGAGACCAGG...TTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGGCTCAAACCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CCA 90 bp GACTTCTCACTTAACATGCAAAGGAGCTACATGTGGCAGGTCACATACTTAAAAGGCTGGGGAGCCGCTTaGTCTTCAGAGGGAGGTCAC +
Preference number: 4 (lower is better)
Translates to: DFSLNMQRSYMWQVTYLKGWGAA*SSEGGH
Trigger: GTGACCTCCCTCTGAAGACCAAGCGGCTCCCCAGCC...TTTTAAGTATGTGACCTGCCACATGTAGCTCCTTTGCATGTTAAGTGAGAAGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR TCA 90 bp CCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAAGCTATTTACGGCTCAGAATTCCCATaGAGAGCTGCTGACCAACCA +
Preference number: 4 (lower is better)
Translates to: PYTQIRSTGRNTCNKAIYGSEFP*RAADQP
Trigger: TGGTTGGTCAGCAGCTCTTCATGGGAATTCTGAGCC...GTAAATAGCTTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR TCA 90 bp AGGTTTGAGCCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAATTCTCCCAGGAGTCTTaGGTCATAACCCGGAACATG +
Preference number: 4 (lower is better)
Translates to: RFEPYTQIRSTGRNTCNKFSQES*VITRNM
Trigger: CATGTTCCGGGTTATGACTCAAGACTCCTGGGAGAA...TTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGGCTCAAACCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR TCA 90 bp TTTGACTTCTCACTTAACATGCAAAGGAGCTACATGTGGCAGGTCACATACTTAGGGAGGTCACAGGCCTaGGCTTCCTCACTAGGCTGT +
Preference number: 4 (lower is better)
Translates to: FDFSLNMQRSYMWQVTYLGRSQA*ASSLGC
Trigger: ACAGCCTAGTGAGGAAGCTCAGGCCTGTGACCTCCC...TAAGTATGTGACCTGCCACATGTAGCTCCTTTGCATGTTAAGTGAGAAGTCAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR TCA 90 bp TTTGAGCCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAAGCTGCCGGCTGGGAAGATTaGCATCTTCGAATATCAGTG +
Preference number: 4 (lower is better)
Translates to: FEPYTQIRSTGRNTCNKAAGWED*HLRISV
Trigger: CACTGATATTCGAAGATGTCAATCTTCCCAGCCGGC...AGCTTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGGCTCAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR TCA 90 bp TTTGAGCCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAAGCTAGCACCAGGCACTGGTaGAATACTTCCGGAATCCAA +
Preference number: 4 (lower is better)
Translates to: FEPYTQIRSTGRNTCNKASTRHW*NTSGIQ
Trigger: TTGGATTCCGGAAGTATTTCACCAGTGCCTGGTGCT...AGCTTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGGCTCAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR TCA 90 bp TTTGACTTCTCACTTAACATGCAAAGGAGCTACATGTGGCAGGTCACATACTTAATTCCAGCATGGGGTTaGGGAGAGCATCCCAGCCGG +
Preference number: 4 (lower is better)
Translates to: FDFSLNMQRSYMWQVTYLIPAWG*GEHPSR
Trigger: CCGGCTGGGATGCTCTCCTCAACCCCATGCTGGAAT...TAAGTATGTGACCTGCCACATGTAGCTCCTTTGCATGTTAAGTGAGAAGTCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR TCA 90 bp TCACTTAACATGCAAAGGAGCTACATGTGGCAGGTCACATACTTAAAACTGAACATTCCAGCATGGGGTTaGGGAGAGCATCCCAGCCGG +
Preference number: 4 (lower is better)
Translates to: SLNMQRSYMWQVTYLKLNIPAWG*GEHPSR
Trigger: CCGGCTGGGATGCTCTCCTCAACCCCATGCTGGAAT...GTTCAGTTTTAAGTATGTGACCTGCCACATGTAGCTCCTTTGCATGTTAAGTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR TCA 90 bp TTGAGCCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAAGCTATCCATCATGAGAAACTaGAACCTGTTGGGCTTGGCC +
Preference number: 4 (lower is better)
Translates to: LSHTPKSAALVETPATKLSIMRN*NLLGLA
Trigger: GGCCAAGCCCAACAGGTTTCAGTTTCTCATGATGGA...TAGCTTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGGCTCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR TCA 90 bp AGGTTTGAGCCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAATCCATCATGAGAAACTaGAACCTGTTGGGCTTGGCC +
Preference number: 4 (lower is better)
Translates to: RFEPYTQIRSTGRNTCNKSIMRN*NLLGLA
Trigger: GGCCAAGCCCAACAGGTTTCAGTTTCTCATGATGGA...TTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGGCTCAAACCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR GCA 90 bp TTGAGCCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAAGCTAAGGCTGGGGCTCAGTTaGTGCCTTGTCTTTGGATTT +
Preference number: 4 (lower is better)
Translates to: LSHTPKSAALVETPATKLRLGLS*CLVFGF
Trigger: AAATCCAAAGACAAGGCAGCAACTGAGCCCCAGCCT...TAGCTTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGGCTCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR GCA 90 bp CCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAAGCTATTTACTGGAGGGGGTCCACGTaGTCATCAAAGAGTTCTACG +
Preference number: 4 (lower is better)
Translates to: PYTQIRSTGRNTCNKAIYWRGST*SSKSST
Trigger: CGTAGAACTCTTTGATGAGCACGTGGACCCCCTCCA...GTAAATAGCTTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CCA 90 bp TTTGAGCCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAAGCTCCCACACCAGGTACTTaGATGCCAAGTTTTTCCCAC +
Preference number: 4 (lower is better)
Translates to: FEPYTQIRSTGRNTCNKAPTPGT*MPSFSH
Trigger: GTGGGAAAAACTTGGCATCCAAGTACCTGGTGTGGG...AGCTTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGGCTCAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CCA 90 bp TTGAGCCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAAGCTACCCACACCAGGTACTTaGATGCCAAGTTTTTCCCAC +
Preference number: 4 (lower is better)
Translates to: LSHTPKSAALVETPATKLPTPGT*MPSFSH
Trigger: GTGGGAAAAACTTGGCATCCAAGTACCTGGTGTGGG...TAGCTTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGGCTCAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CCA 90 bp TTTGAGCCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAAGCTGCACTTTGGTTTTCCTaGTCTCTCCTTCTGGGTTCC +
Preference number: 4 (lower is better)
Translates to: FEPYTQIRSTGRNTCNKAALWFS*SLLLGS
Trigger: GGAACCCAGAAGGAGAGACCAGGAAAACCAAAGTGC...AGCTTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGGCTCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CCA 90 bp AGGTTTGAGCCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAATGCCTCATTTGGCTTTaGCGAGTTTTGCCTCCTGCA +
Preference number: 4 (lower is better)
Translates to: RFEPYTQIRSTGRNTCNKCLIWL*RVLPPA
Trigger: TGCAGGAGGCAAAACTCGCCAAAGCCAAATGAGGCA...TTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGGCTCAAACCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CCA 90 bp TTGAGCCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAAGCTATTTGTTCAGGGGCCTTaGGATGGGCTTTTGAGGCTT +
Preference number: 4 (lower is better)
Translates to: LSHTPKSAALVETPATKLFVQGP*DGLLRL
Trigger: AAGCCTCAAAAGCCCATCCCAAGGCCCCTGAACAAA...TAGCTTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGGCTCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR TCA 90 bp TCACTTAACATGCAAAGGAGCTACATGTGGCAGGTCACATACTTAAAACTGAACCCAAGCGGACAATCCTaGAGAGTGTGGGCGGGAAGA +
Preference number: 4 (lower is better)
Translates to: SLNMQRSYMWQVTYLKLNPSGQS*RVWAGR
Trigger: TCTTCCCGCCCACACTCTTCAGGATTGTCCGCTTGG...GTTCAGTTTTAAGTATGTGACCTGCCACATGTAGCTCCTTTGCATGTTAAGTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR TCA 90 bp TTTGAGCCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAAGCTATTGCAAGAGGCTTTTaGTTCCAGCATGGGGTTGAG +
Preference number: 4 (lower is better)
Translates to: FEPYTQIRSTGRNTCNKAIARGF*FQHGVE
Trigger: CTCAACCCCATGCTGGAATCAAAAGCCTCTTGCAAT...AGCTTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGGCTCAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR GCA 90 bp TTGAGCCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAAGCTACTGGGGCTCAGTTGCTaGCTTGTCTTTGGATTTCTT +
Preference number: 4 (lower is better)
Translates to: LSHTPKSAALVETPATKLLGLSC*LVFGFL
Trigger: AAGAAATCCAAAGACAAGGCAGCAACTGAGCCCCAG...TAGCTTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGGCTCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR GCA 90 bp TTTGAGCCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAAGCTCTGGGGCTCAGTTGCTaGCTTGTCTTTGGATTTCTT +
Preference number: 4 (lower is better)
Translates to: FEPYTQIRSTGRNTCNKALGLSC*LVFGFL
Trigger: AAGAAATCCAAAGACAAGGCAGCAACTGAGCCCCAG...AGCTTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGGCTCAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CCA 90 bp CCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAAGCTATTTACTGCCTCATTTGGCTTTaGCGAGTTTTGCCTCCTGCA +
Preference number: 4 (lower is better)
Translates to: PYTQIRSTGRNTCNKAIYCLIWL*RVLPPA
Trigger: TGCAGGAGGCAAAACTCGCCAAAGCCAAATGAGGCA...GTAAATAGCTTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CCA 90 bp TATGTATTTATTTGTCAAACACCTAGGACAGAGATCAGAGCTTCTGAAAGTTGGCTCTTCTTTTGCCAGTaGGGCCAGTGGAGCCCCGGC +
Preference number: 4 (lower is better)
Translates to: YVFICQTPRTEIRASESWLFFCQ*GQWSPG
Trigger: GCCGGGGCTCCACTGGCCCCACTGGCAAAAGAAGAG...CCAACTTTCAGAAGCTCTGATCTCTGTCCTAGGTGTTTGACAAATAAATACATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CCA 90 bp CCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAAGCTATTTACGCTGAAGTGGTTATCTaGAAGAGGCAGAGCATGCTG +
Preference number: 4 (lower is better)
Translates to: PYTQIRSTGRNTCNKAIYAEVVI*KRQSML
Trigger: CAGCATGCTCTGCCTCTTCCAGATAACCACTTCAGC...GTAAATAGCTTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CCA 90 bp TTGAGCCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAAGCTACCATTGCAAAACACCTaGAGCGATGAACTTGACCTG +
Preference number: 4 (lower is better)
Translates to: LSHTPKSAALVETPATKLPLQNT*SDELDL
Trigger: CAGGTCAAGTTCATCGCTCCAGGTGTTTTGCAATGG...TAGCTTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGGCTCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR TCA 90 bp CCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAAGCTATTTACTCTCCTTTTGGATGGTaGTCCGCTTCTCTATTGCAG +
Preference number: 4 (lower is better)
Translates to: PYTQIRSTGRNTCNKAIYSPFGW*SASLLQ
Trigger: CTGCAATAGAGAAGCGGATCACCATCCAAAAGGAGA...GTAAATAGCTTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR TCA 90 bp TTTGAGCCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAAGCTGAACATGCTGAAGACTaGATGGACAGAGATGCGAAT +
Preference number: 4 (lower is better)
Translates to: FEPYTQIRSTGRNTCNKAEHAED*MDRDAN
Trigger: ATTCGCATCTCTGTCCATTCAGTCTTCAGCATGTTC...AGCTTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGGCTCAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR TCA 90 bp AGGTTTGAGCCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAAGAACATGCTGAAGACTaGATGGACAGAGATGCGAAT +
Preference number: 4 (lower is better)
Translates to: RFEPYTQIRSTGRNTCNKEHAED*MDRDAN
Trigger: ATTCGCATCTCTGTCCATTCAGTCTTCAGCATGTTC...TTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGGCTCAAACCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR TCA 90 bp TCACTTAACATGCAAAGGAGCTACATGTGGCAGGTCACATACTTAAAACTGAACCCTCGTAAGCCATGGTaGCGACAGCCAGGGTTAAGT +
Preference number: 4 (lower is better)
Translates to: SLNMQRSYMWQVTYLKLNPRKPW*RQPGLS
Trigger: ACTTAACCCTGGCTGTCGTCACCATGGCTTACGAGG...GTTCAGTTTTAAGTATGTGACCTGCCACATGTAGCTCCTTTGCATGTTAAGTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR TCA 90 bp GGTTTTGACTTCTCACTTAACATGCAAAGGAGCTACATGTGGCAGGTCACATACTCGAACACGAAGGCTTaGCATTTGTTCAGGGGCCTT +
Preference number: 4 (lower is better)
Translates to: GFDFSLNMQRSYMWQVTYSNTKA*HLFRGL
Trigger: AAGGCCCCTGAACAAATGTCAAGCCTTCGTGTTCGA...GTATGTGACCTGCCACATGTAGCTCCTTTGCATGTTAAGTGAGAAGTCAAAACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR GCA 90 bp GGTTTTGACTTCTCACTTAACATGCAAAGGAGCTACATGTGGCAGGTCACATACCACCAGGTACTTGGATaGCAAGTTTTTCCCACACGG +
Preference number: 4 (lower is better)
Translates to: GFDFSLNMQRSYMWQVTYHQVLG*QVFPTR
Trigger: CCGTGTGGGAAAAACTTGGCATCCAAGTACCTGGTG...GTATGTGACCTGCCACATGTAGCTCCTTTGCATGTTAAGTGAGAAGTCAAAACC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR GCA 90 bp TTTGACTTCTCACTTAACATGCAAAGGAGCTACATGTGGCAGGTCACATACTTAATCGTCCTCTTCTTTTaGCAGTGGGGCCAGTGGAGC +
Preference number: 4 (lower is better)
Translates to: FDFSLNMQRSYMWQVTYLIVLFF*QWGQWS
Trigger: GCTCCACTGGCCCCACTGGCAAAAGAAGAGGACGAT...TAAGTATGTGACCTGCCACATGTAGCTCCTTTGCATGTTAAGTGAGAAGTCAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR GCA 90 bp AGGTTTGAGCCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAACATTCAGGTCTATTGTaGTGCATTCTGAGAGCATGC +
Preference number: 4 (lower is better)
Translates to: RFEPYTQIRSTGRNTCNKHSGLL*CILRAC
Trigger: GCATGCTCTCAGAATGCAGCACAATAGACCTGAATG...TTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGGCTCAAACCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR TCA 90 bp AGGTTTGAGCCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAAGATGACCTTCAGACCTaGGATTACAGAAATGGCTTT +
Preference number: 4 (lower is better)
Translates to: RFEPYTQIRSTGRNTCNKDDLQT*DYRNGF
Trigger: AAAGCCATTTCTGTAATCTCAGGTCTGAAGGTCATC...TTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGGCTCAAACCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR TCA 90 bp TCACTTAACATGCAAAGGAGCTACATGTGGCAGGTCACATACTTAAAACTGAACGGCTCAGAATTCCCATaGAGAGCTGCTGACCAACCA +
Preference number: 4 (lower is better)
Translates to: SLNMQRSYMWQVTYLKLNGSEFP*RAADQP
Trigger: TGGTTGGTCAGCAGCTCTTCATGGGAATTCTGAGCC...GTTCAGTTTTAAGTATGTGACCTGCCACATGTAGCTCCTTTGCATGTTAAGTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR TCA 90 bp CTATTTACTTATGGCAGGGTTTTGACTTCTCACTTAACATGCAAAGGAGCTACACCTCGTAAGCCATGGTaGCGACAGCCAGGGTTAAGT +
Preference number: 4 (lower is better)
Translates to: LFTYGRVLTSHLTCKGATPRKPW*RQPGLS
Trigger: ACTTAACCCTGGCTGTCGTCACCATGGCTTACGAGG...TGTAGCTCCTTTGCATGTTAAGTGAGAAGTCAAAACCCTGCCATAAGTAAATAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR TCA 90 bp CTATTTACTTATGGCAGGGTTTTGACTTCTCACTTAACATGCAAAGGAGCTACATCAGCACAAAGACGATaGCACACAGCGGGGAGCCTT +
Preference number: 4 (lower is better)
Translates to: LFTYGRVLTSHLTCKGATSAQRR*HTAGSL
Trigger: AAGGCTCCCCGCTGTGTGTCATCGTCTTTGTGCTGA...TGTAGCTCCTTTGCATGTTAAGTGAGAAGTCAAAACCCTGCCATAAGTAAATAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR TCA 90 bp TCACTTAACATGCAAAGGAGCTACATGTGGCAGGTCACATACTTAAAACTGAACAGACCAGCAAGACATTaGGGATGGCAGGTATGGCAC +
Preference number: 4 (lower is better)
Translates to: SLNMQRSYMWQVTYLKLNRPARH*GWQVWH
Trigger: GTGCCATACCTGCCATCCTCAATGTCTTGCTGGTCT...GTTCAGTTTTAAGTATGTGACCTGCCACATGTAGCTCCTTTGCATGTTAAGTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR TCA 90 bp GGTAGAAACACCTGCAACAAAGCTATTTACTTATGGCAGGGTTTTGACTTCTCAAGACCAGCAAGACATTaGGGATGGCAGGTATGGCAC +
Preference number: 4 (lower is better)
Translates to: GRNTCNKAIYLWQGFDFSRPARH*GWQVWH
Trigger: GTGCCATACCTGCCATCCTCAATGTCTTGCTGGTCT...TGAGAAGTCAAAACCCTGCCATAAGTAAATAGCTTTGTTGCAGGTGTTTCTACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR TCA 90 bp GGTTTTGACTTCTCACTTAACATGCAAAGGAGCTACATGTGGCAGGTCACATACCCTCTGTGGCTGTGTTaGAGTTCTCTAGAATCACAG +
Preference number: 4 (lower is better)
Translates to: GFDFSLNMQRSYMWQVTYPLWLC*SSLESQ
Trigger: CTGTGATTCTAGAGAACTTCAACACAGCCACAGAGG...GTATGTGACCTGCCACATGTAGCTCCTTTGCATGTTAAGTGAGAAGTCAAAACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR GCA 90 bp CTATTTACTTATGGCAGGGTTTTGACTTCTCACTTAACATGCAAAGGAGCTACATTCAAACTGAGACAGTaGCCGCAGAGGTCTCAGCGC +
Preference number: 4 (lower is better)
Translates to: LFTYGRVLTSHLTCKGATFKLRQ*PQRSQR
Trigger: GCGCTGAGACCTCTGCGGGCACTGTCTCAGTTTGAA...TGTAGCTCCTTTGCATGTTAAGTGAGAAGTCAAAACCCTGCCATAAGTAAATAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR GCA 90 bp TCACTTAACATGCAAAGGAGCTACATGTGGCAGGTCACATACTTAAAACTGAACTGGGCGGGAAGACGTTaGTGTTCTCCAAGCCAGAAA +
Preference number: 4 (lower is better)
Translates to: SLNMQRSYMWQVTYLKLNWAGRR*CSPSQK
Trigger: TTTCTGGCTTGGAGAACAGCAACGTCTTCCCGCCCA...GTTCAGTTTTAAGTATGTGACCTGCCACATGTAGCTCCTTTGCATGTTAAGTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR GCA 90 bp TCACTTAACATGCAAAGGAGCTACATGTGGCAGGTCACATACTTAAAACTGAACGGAAGAGGCAGAGCATaGTGCCCGAGAAAGTGTCAA +
Preference number: 4 (lower is better)
Translates to: SLNMQRSYMWQVTYLKLNGRGRA*CPRKCQ
Trigger: TTGACACTTTCTCGGGCAGCATGCTCTGCCTCTTCC...GTTCAGTTTTAAGTATGTGACCTGCCACATGTAGCTCCTTTGCATGTTAAGTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CCA 90 bp CCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAAGCTATTTACTTCTGTCAATTCCCATaGCAACCAGAGCCTCCTTTT +
Preference number: 4 (lower is better)
Translates to: PYTQIRSTGRNTCNKAIYFCQFP*QPEPPF
Trigger: AAAAGGAGGCTCTGGTTGCCATGGGAATTGACAGAA...GTAAATAGCTTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CCA 90 bp TTGAGCCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAAGCTAGAGTTATCCATATTGTaGTGTTCCATGGCCAAGAAG +
Preference number: 4 (lower is better)
Translates to: LSHTPKSAALVETPATKLELSIL*CSMAKK
Trigger: CTTCTTGGCCATGGAACACCACAATATGGATAACTC...TAGCTTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGGCTCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CCA 90 bp GGTAGAAACACCTGCAACAAAGCTATTTACTTATGGCAGGGTTTTGACTTCTCACCTGGTCTCTCCTTCTaGGTTCCCATCCTTTTCCTC +
Preference number: 4 (lower is better)
Translates to: GRNTCNKAIYLWQGFDFSPGLSF*VPILFL
Trigger: GAGGAAAAGGATGGGAACCCAGAAGGAGAGACCAGG...TGAGAAGTCAAAACCCTGCCATAAGTAAATAGCTTTGTTGCAGGTGTTTCTACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CCA 90 bp GGTTTTGACTTCTCACTTAACATGCAAAGGAGCTACATGTGGCAGGTCACATACGAGAGGGATGAGTACTaGATGAACTGTGTTGCTTCG +
Preference number: 4 (lower is better)
Translates to: GFDFSLNMQRSYMWQVTYERDEY*MNCVAS
Trigger: CGAAGCAACACAGTTCATCCAGTACTCATCCCTCTC...GTATGTGACCTGCCACATGTAGCTCCTTTGCATGTTAAGTGAGAAGTCAAAACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CCA 90 bp GTATTTATTTGTCAAACACCTAGGACAGAGATCAGAGCTTCTGAAAGTTGGGGTGAAACTGAAACCTGTTaGGCTTGGCCACACGCAACG +
Preference number: 4 (lower is better)
Translates to: VFICQTPRTEIRASESWGETETC*AWPHAT
Trigger: CGTTGCGTGTGGCCAAGCCCAACAGGTTTCAGTTTC...ACCCCAACTTTCAGAAGCTCTGATCTCTGTCCTAGGTGTTTGACAAATAAATAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CCA 90 bp GACTTCTCACTTAACATGCAAAGGAGCTACATGTGGCAGGTCACATACTTAAAAGAAACTGAAACCTGTTaGGCTTGGCCACACGCAACG +
Preference number: 4 (lower is better)
Translates to: DFSLNMQRSYMWQVTYLKETETC*AWPHAT
Trigger: CGTTGCGTGTGGCCAAGCCCAACAGGTTTCAGTTTC...TTTTAAGTATGTGACCTGCCACATGTAGCTCCTTTGCATGTTAAGTGAGAAGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR TCA 90 bp GGTAGAAACACCTGCAACAAAGCTATTTACTTATGGCAGGGTTTTGACTTCTCACCAAAGAGTCGAAAGTaGAGGGGCGGAAATTCCTCT +
Preference number: 4 (lower is better)
Translates to: GRNTCNKAIYLWQGFDFSPKSRK*RGGNSS
Trigger: AGAGGAATTTCCGCCCCTTCACTTTCGACTCTTTGG...TGAGAAGTCAAAACCCTGCCATAAGTAAATAGCTTTGTTGCAGGTGTTTCTACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR TCA 90 bp GACTTCTCACTTAACATGCAAAGGAGCTACATGTGGCAGGTCACATACTTAAAATTCTCCCAGGAGTCTTaGGTCATAACCCGGAACATG +
Preference number: 4 (lower is better)
Translates to: DFSLNMQRSYMWQVTYLKFSQES*VITRNM
Trigger: CATGTTCCGGGTTATGACTCAAGACTCCTGGGAGAA...TTTTAAGTATGTGACCTGCCACATGTAGCTCCTTTGCATGTTAAGTGAGAAGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR TCA 90 bp GTATTTATTTGTCAAACACCTAGGACAGAGATCAGAGCTTCTGAAAGTTGGGGTGCCGGCTGGGAAGATTaGCATCTTCGAATATCAGTG +
Preference number: 4 (lower is better)
Translates to: VFICQTPRTEIRASESWGAGWED*HLRISV
Trigger: CACTGATATTCGAAGATGTCAATCTTCCCAGCCGGC...ACCCCAACTTTCAGAAGCTCTGATCTCTGTCCTAGGTGTTTGACAAATAAATAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR TCA 90 bp TATGTATTTATTTGTCAAACACCTAGGACAGAGATCAGAGCTTCTGAAAGTTGGCAGACACCACCACAATaGGGAAATCGAGCCAGCACC +
Preference number: 4 (lower is better)
Translates to: YVFICQTPRTEIRASESWQTPPQ*GNRAST
Trigger: GGTGCTGGCTCGATTTCCTCATTGTGGTGGTGTCTG...CCAACTTTCAGAAGCTCTGATCTCTGTCCTAGGTGTTTGACAAATAAATACATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR TCA 90 bp TCACTTAACATGCAAAGGAGCTACATGTGGCAGGTCACATACTTAAAACTGAACTTCATTCCTTCAAACTaGGACAGTGCCCGCAGAGGT +
Preference number: 4 (lower is better)
Translates to: SLNMQRSYMWQVTYLKLNFIPSN*DSARRG
Trigger: ACCTCTGCGGGCACTGTCTCAGTTTGAAGGAATGAA...GTTCAGTTTTAAGTATGTGACCTGCCACATGTAGCTCCTTTGCATGTTAAGTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR TCA 90 bp GACTTCTCACTTAACATGCAAAGGAGCTACATGTGGCAGGTCACATACTTAAAATCGAACACGAAGGCTTaGCATTTGTTCAGGGGCCTT +
Preference number: 4 (lower is better)
Translates to: DFSLNMQRSYMWQVTYLKSNTKA*HLFRGL
Trigger: AAGGCCCCTGAACAAATGTCAAGCCTTCGTGTTCGA...TTTTAAGTATGTGACCTGCCACATGTAGCTCCTTTGCATGTTAAGTGAGAAGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR TCA 90 bp TTGAGCCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAAGCTAAGAAAGTGTCAAAGTTaGAGATGTCATCAATCCCAG +
Preference number: 4 (lower is better)
Translates to: LSHTPKSAALVETPATKLRKCQS*RCHQSQ
Trigger: CTGGGATTGATGACATCTTCAACTTTGACACTTTCT...TAGCTTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGGCTCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR GCA 90 bp GTATTTATTTGTCAAACACCTAGGACAGAGATCAGAGCTTCTGAAAGTTGGGGTCACCAGGTACTTGGATaGCAAGTTTTTCCCACACGG +
Preference number: 4 (lower is better)
Translates to: VFICQTPRTEIRASESWGHQVLG*QVFPTR
Trigger: CCGTGTGGGAAAAACTTGGCATCCAAGTACCTGGTG...ACCCCAACTTTCAGAAGCTCTGATCTCTGTCCTAGGTGTTTGACAAATAAATAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR GCA 90 bp GGTAGAAACACCTGCAACAAAGCTATTTACTTATGGCAGGGTTTTGACTTCTCAGAGCCTTCCATCTCCTaGATGCATTCCCACATGTTC +
Preference number: 4 (lower is better)
Translates to: GRNTCNKAIYLWQGFDFSEPSIS*MHSHMF
Trigger: GAACATGTGGGAATGCATGCAGGAGATGGAAGGCTC...TGAGAAGTCAAAACCCTGCCATAAGTAAATAGCTTTGTTGCAGGTGTTTCTACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR GCA 90 bp GTATTTATTTGTCAAACACCTAGGACAGAGATCAGAGCTTCTGAAAGTTGGGGTGAGCCTTCCATCTCCTaGATGCATTCCCACATGTTC +
Preference number: 4 (lower is better)
Translates to: VFICQTPRTEIRASESWGEPSIS*MHSHMF
Trigger: GAACATGTGGGAATGCATGCAGGAGATGGAAGGCTC...ACCCCAACTTTCAGAAGCTCTGATCTCTGTCCTAGGTGTTTGACAAATAAATAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR GCA 90 bp GGTTTTGACTTCTCACTTAACATGCAAAGGAGCTACATGTGGCAGGTCACATACGCCTCCTGCATCTCTTaGAACAGAAATTCTGAAGAG +
Preference number: 4 (lower is better)
Translates to: GFDFSLNMQRSYMWQVTYASCIS*NRNSEE
Trigger: CTCTTCAGAATTTCTGTTGCAAGAGATGCAGGAGGC...GTATGTGACCTGCCACATGTAGCTCCTTTGCATGTTAAGTGAGAAGTCAAAACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CCA 90 bp TCACTTAACATGCAAAGGAGCTACATGTGGCAGGTCACATACTTAAAACTGAACGCACTTTGGTTTTCCTaGTCTCTCCTTCTGGGTTCC +
Preference number: 4 (lower is better)
Translates to: SLNMQRSYMWQVTYLKLNALWFS*SLLLGS
Trigger: GGAACCCAGAAGGAGAGACCAGGAAAACCAAAGTGC...GTTCAGTTTTAAGTATGTGACCTGCCACATGTAGCTCCTTTGCATGTTAAGTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CCA 90 bp GACTTCTCACTTAACATGCAAAGGAGCTACATGTGGCAGGTCACATACTTAAAAACCTTGTATCCAGGGTaGCTGTGTCTCTACTCTCAC +
Preference number: 4 (lower is better)
Translates to: DFSLNMQRSYMWQVTYLKTLYPG*LCLYSH
Trigger: GTGAGAGTAGAGACACAGCCACCCTGGATACAAGGT...TTTTAAGTATGTGACCTGCCACATGTAGCTCCTTTGCATGTTAAGTGAGAAGTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CCA 90 bp GTATTTATTTGTCAAACACCTAGGACAGAGATCAGAGCTTCTGAAAGTTGGGGTACCTTGTATCCAGGGTaGCTGTGTCTCTACTCTCAC +
Preference number: 4 (lower is better)
Translates to: VFICQTPRTEIRASESWGTLYPG*LCLYSH
Trigger: GTGAGAGTAGAGACACAGCCACCCTGGATACAAGGT...ACCCCAACTTTCAGAAGCTCTGATCTCTGTCCTAGGTGTTTGACAAATAAATAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CCA 90 bp GACTTCTCACTTAACATGCAAAGGAGCTACATGTGGCAGGTCACATACTTAAAATTTGTTCAGGGGCCTTaGGATGGGCTTTTGAGGCTT +
Preference number: 4 (lower is better)
Translates to: DFSLNMQRSYMWQVTYLKFVQGP*DGLLRL
Trigger: AAGCCTCAAAAGCCCATCCCAAGGCCCCTGAACAAA...TTTTAAGTATGTGACCTGCCACATGTAGCTCCTTTGCATGTTAAGTGAGAAGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR TCA 90 bp CTATTTACTTATGGCAGGGTTTTGACTTCTCACTTAACATGCAAAGGAGCTACACCAAAGAGTCGAAAGTaGAGGGGCGGAAATTCCTCT +
Preference number: 4 (lower is better)
Translates to: LFTYGRVLTSHLTCKGATPKSRK*RGGNSS
Trigger: AGAGGAATTTCCGCCCCTTCACTTTCGACTCTTTGG...TGTAGCTCCTTTGCATGTTAAGTGAGAAGTCAAAACCCTGCCATAAGTAAATAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR TCA 90 bp TTGAGCCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAAGCTAGAGTGGAAAGATTATTaGCTTTGTTACCGAGAAAAC +
Preference number: 4 (lower is better)
Translates to: LSHTPKSAALVETPATKLEWKDY*LCYREN
Trigger: GTTTTCTCGGTAACAAAGTCAATAATCTTTCCACTC...TAGCTTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGGCTCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR TCA 90 bp AGGTTTGAGCCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAAGAGTGGAAAGATTATTaGCTTTGTTACCGAGAAAAC +
Preference number: 4 (lower is better)
Translates to: RFEPYTQIRSTGRNTCNKEWKDY*LCYREN
Trigger: GTTTTCTCGGTAACAAAGTCAATAATCTTTCCACTC...TTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGGCTCAAACCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR TCA 90 bp GGTTTTGACTTCTCACTTAACATGCAAAGGAGCTACATGTGGCAGGTCACATACGATGACCTTCAGACCTaGGATTACAGAAATGGCTTT +
Preference number: 4 (lower is better)
Translates to: GFDFSLNMQRSYMWQVTYDDLQT*DYRNGF
Trigger: AAAGCCATTTCTGTAATCTCAGGTCTGAAGGTCATC...GTATGTGACCTGCCACATGTAGCTCCTTTGCATGTTAAGTGAGAAGTCAAAACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR TCA 90 bp CTATTTACTTATGGCAGGGTTTTGACTTCTCACTTAACATGCAAAGGAGCTACATATTGTGCTGCATTCTaGGAGCATGCTTGCCGCATC +
Preference number: 4 (lower is better)
Translates to: LFTYGRVLTSHLTCKGATYCAAF*EHACRI
Trigger: GATGCGGCAAGCATGCTCTCAGAATGCAGCACAATA...TGTAGCTCCTTTGCATGTTAAGTGAGAAGTCAAAACCCTGCCATAAGTAAATAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR TCA 90 bp CTATTTACTTATGGCAGGGTTTTGACTTCTCACTTAACATGCAAAGGAGCTACATTCATTCCTTCAAACTaGGACAGTGCCCGCAGAGGT +
Preference number: 4 (lower is better)
Translates to: LFTYGRVLTSHLTCKGATFIPSN*DSARRG
Trigger: ACCTCTGCGGGCACTGTCTCAGTTTGAAGGAATGAA...TGTAGCTCCTTTGCATGTTAAGTGAGAAGTCAAAACCCTGCCATAAGTAAATAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR TCA 90 bp AGGTTTGAGCCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAACAAAGATGGCATAAATaGACATCACCAGAAAGAGAA +
Preference number: 4 (lower is better)
Translates to: RFEPYTQIRSTGRNTCNKQRWHK*TSPERE
Trigger: TTCTCTTTCTGGTGATGTTCATTTATGCCATCTTTG...TTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGGCTCAAACCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR TCA 90 bp TTTGACTTCTCACTTAACATGCAAAGGAGCTACATGTGGCAGGTCACATACTTACCTCTGTGGCTGTGTTaGAGTTCTCTAGAATCACAG +
Preference number: 4 (lower is better)
Translates to: FDFSLNMQRSYMWQVTYLPLWLC*SSLESQ
Trigger: CTGTGATTCTAGAGAACTTCAACACAGCCACAGAGG...TAAGTATGTGACCTGCCACATGTAGCTCCTTTGCATGTTAAGTGAGAAGTCAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR GCA 90 bp CCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAAGCTATTTACGATAGTCGTTTTGTTTaGTCAAGGAGTTGTGGGTTT +
Preference number: 4 (lower is better)
Translates to: PYTQIRSTGRNTCNKAIYDSRFV*SRSCGF
Trigger: AAACCCACAACTCCTTGAGCAAACAAAACGACTATC...GTAAATAGCTTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR GCA 90 bp GACTTCTCACTTAACATGCAAAGGAGCTACATGTGGCAGGTCACATACTTAAAACTGGATGAACTGTGTTaGTTCGGGGTCAAACTTCTC +
Preference number: 4 (lower is better)
Translates to: DFSLNMQRSYMWQVTYLKLDELC*FGVKLL
Trigger: GAGAAGTTTGACCCCGAAGCAACACAGTTCATCCAG...TTTTAAGTATGTGACCTGCCACATGTAGCTCCTTTGCATGTTAAGTGAGAAGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CCA 90 bp TTGAGCCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAAGCTATCCTTAATACATTTCTaGCTCAGAATTCCCATGAAG +
Preference number: 4 (lower is better)
Translates to: LSHTPKSAALVETPATKLSLIHF*LRIPMK
Trigger: CTTCATGGGAATTCTGAGCCAGAAATGTATTAAGGA...TAGCTTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGGCTCAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CCA 90 bp CTATTTACTTATGGCAGGGTTTTGACTTCTCACTTAACATGCAAAGGAGCTACAGCTGAAGTGGTTATCTaGAAGAGGCAGAGCATGCTG +
Preference number: 4 (lower is better)
Translates to: LFTYGRVLTSHLTCKGATAEVVI*KRQSML
Trigger: CAGCATGCTCTGCCTCTTCCAGATAACCACTTCAGC...TGTAGCTCCTTTGCATGTTAAGTGAGAAGTCAAAACCCTGCCATAAGTAAATAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CCA 90 bp TTTGACTTCTCACTTAACATGCAAAGGAGCTACATGTGGCAGGTCACATACTTAGAGAGGGATGAGTACTaGATGAACTGTGTTGCTTCG +
Preference number: 4 (lower is better)
Translates to: FDFSLNMQRSYMWQVTYLERDEY*MNCVAS
Trigger: CGAAGCAACACAGTTCATCCAGTACTCATCCCTCTC...TAAGTATGTGACCTGCCACATGTAGCTCCTTTGCATGTTAAGTGAGAAGTCAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CCA 90 bp GGTAGAAACACCTGCAACAAAGCTATTTACTTATGGCAGGGTTTTGACTTCTCACCATTGCAAAACACCTaGAGCGATGAACTTGACCTG +
Preference number: 4 (lower is better)
Translates to: GRNTCNKAIYLWQGFDFSPLQNT*SDELDL
Trigger: CAGGTCAAGTTCATCGCTCCAGGTGTTTTGCAATGG...TGAGAAGTCAAAACCCTGCCATAAGTAAATAGCTTTGTTGCAGGTGTTTCTACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR TCA 90 bp CTATTTACTTATGGCAGGGTTTTGACTTCTCACTTAACATGCAAAGGAGCTACATCTCCTTTTGGATGGTaGTCCGCTTCTCTATTGCAG +
Preference number: 4 (lower is better)
Translates to: LFTYGRVLTSHLTCKGATSPFGW*SASLLQ
Trigger: CTGCAATAGAGAAGCGGATCACCATCCAAAAGGAGA...TGTAGCTCCTTTGCATGTTAAGTGAGAAGTCAAAACCCTGCCATAAGTAAATAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR TCA 90 bp TATGTATTTATTTGTCAAACACCTAGGACAGAGATCAGAGCTTCTGAAAGTTGGTATTGTGCTGCATTCTaGGAGCATGCTTGCCGCATC +
Preference number: 4 (lower is better)
Translates to: YVFICQTPRTEIRASESWYCAAF*EHACRI
Trigger: GATGCGGCAAGCATGCTCTCAGAATGCAGCACAATA...CCAACTTTCAGAAGCTCTGATCTCTGTCCTAGGTGTTTGACAAATAAATACATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR TCA 90 bp TATGTATTTATTTGTCAAACACCTAGGACAGAGATCAGAGCTTCTGAAAGTTGGAGCACCAGGCACTGGTaGAATACTTCCGGAATCCAA +
Preference number: 4 (lower is better)
Translates to: YVFICQTPRTEIRASESWSTRHW*NTSGIQ
Trigger: TTGGATTCCGGAAGTATTTCACCAGTGCCTGGTGCT...CCAACTTTCAGAAGCTCTGATCTCTGTCCTAGGTGTTTGACAAATAAATACATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR GCA 90 bp GTATTTATTTGTCAAACACCTAGGACAGAGATCAGAGCTTCTGAAAGTTGGGGTGATCCGCTTCTCTATTaGAGCCAAAGAGTCGAAAGT +
Preference number: 4 (lower is better)
Translates to: VFICQTPRTEIRASESWGDPLLY*SQRVES
Trigger: ACTTTCGACTCTTTGGCTGCAATAGAGAAGCGGATC...ACCCCAACTTTCAGAAGCTCTGATCTCTGTCCTAGGTGTTTGACAAATAAATAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR GCA 90 bp GGTAGAAACACCTGCAACAAAGCTATTTACTTATGGCAGGGTTTTGACTTCTCAGCCTCCTGCATCTCTTaGAACAGAAATTCTGAAGAG +
Preference number: 4 (lower is better)
Translates to: GRNTCNKAIYLWQGFDFSASCIS*NRNSEE
Trigger: CTCTTCAGAATTTCTGTTGCAAGAGATGCAGGAGGC...TGAGAAGTCAAAACCCTGCCATAAGTAAATAGCTTTGTTGCAGGTGTTTCTACC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR GCA 90 bp GGTAGAAACACCTGCAACAAAGCTATTTACTTATGGCAGGGTTTTGACTTCTCAGCGAGTTTTGCCTCCTaGATCTCTTGCAACAGAAAT +
Preference number: 4 (lower is better)
Translates to: GRNTCNKAIYLWQGFDFSASFAS*ISCNRN
Trigger: ATTTCTGTTGCAAGAGATGCAGGAGGCAAAACTCGC...TGAGAAGTCAAAACCCTGCCATAAGTAAATAGCTTTGTTGCAGGTGTTTCTACC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR GCA 90 bp TCACTTAACATGCAAAGGAGCTACATGTGGCAGGTCACATACTTAAAACTGAACTCAGGTCTATTGTGCTaGATTCTGAGAGCATGCTTG +
Preference number: 4 (lower is better)
Translates to: SLNMQRSYMWQVTYLKLNSGLLC*ILRACL
Trigger: CAAGCATGCTCTCAGAATGCAGCACAATAGACCTGA...GTTCAGTTTTAAGTATGTGACCTGCCACATGTAGCTCCTTTGCATGTTAAGTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR GCA 90 bp GACTTCTCACTTAACATGCAAAGGAGCTACATGTGGCAGGTCACATACTTAAAACTTGGGAGGAGGAATTaGAAGAGGCTTTTGATTCCA +
Preference number: 4 (lower is better)
Translates to: DFSLNMQRSYMWQVTYLKLGRRN*KRLLIP
Trigger: TGGAATCAAAAGCCTCTTGCAATTCCTCCTCCCAAG...TTTTAAGTATGTGACCTGCCACATGTAGCTCCTTTGCATGTTAAGTGAGAAGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR GCA 90 bp CTATTTACTTATGGCAGGGTTTTGACTTCTCACTTAACATGCAAAGGAGCTACACTGGATGAACTGTGTTaGTTCGGGGTCAAACTTCTC +
Preference number: 4 (lower is better)
Translates to: LFTYGRVLTSHLTCKGATLDELC*FGVKLL
Trigger: GAGAAGTTTGACCCCGAAGCAACACAGTTCATCCAG...TGTAGCTCCTTTGCATGTTAAGTGAGAAGTCAAAACCCTGCCATAAGTAAATAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CCA 90 bp TCACTTAACATGCAAAGGAGCTACATGTGGCAGGTCACATACTTAAAACTGAACTTGCTCAAGGAGTTGTaGGTTTTTAGAGGCATCGTC +
Preference number: 4 (lower is better)
Translates to: SLNMQRSYMWQVTYLKLNLLKEL*VFRGIV
Trigger: GACGATGCCTCTAAAAACCCACAACTCCTTGAGCAA...GTTCAGTTTTAAGTATGTGACCTGCCACATGTAGCTCCTTTGCATGTTAAGTGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CCA 90 bp GTATTTATTTGTCAAACACCTAGGACAGAGATCAGAGCTTCTGAAAGTTGGGGTTTGCTCAAGGAGTTGTaGGTTTTTAGAGGCATCGTC +
Preference number: 4 (lower is better)
Translates to: VFICQTPRTEIRASESWGLLKEL*VFRGIV
Trigger: GACGATGCCTCTAAAAACCCACAACTCCTTGAGCAA...ACCCCAACTTTCAGAAGCTCTGATCTCTGTCCTAGGTGTTTGACAAATAAATAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CCA 90 bp TCACTTAACATGCAAAGGAGCTACATGTGGCAGGTCACATACTTAAAACTGAACTTCTGTTGCCTCATTTaGCTTTGGCGAGTTTTGCCT +
Preference number: 4 (lower is better)
Translates to: SLNMQRSYMWQVTYLKLNFCCLI*LWRVLP
Trigger: AGGCAAAACTCGCCAAAGCCAAATGAGGCAACAGAA...GTTCAGTTTTAAGTATGTGACCTGCCACATGTAGCTCCTTTGCATGTTAAGTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CCA 90 bp TTTGACTTCTCACTTAACATGCAAAGGAGCTACATGTGGCAGGTCACATACTTATTCTGTTGCCTCATTTaGCTTTGGCGAGTTTTGCCT +
Preference number: 4 (lower is better)
Translates to: FDFSLNMQRSYMWQVTYLFCCLI*LWRVLP
Trigger: AGGCAAAACTCGCCAAAGCCAAATGAGGCAACAGAA...TAAGTATGTGACCTGCCACATGTAGCTCCTTTGCATGTTAAGTGAGAAGTCAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CCA 90 bp TTTGACTTCTCACTTAACATGCAAAGGAGCTACATGTGGCAGGTCACATACTTAGCTCATCTTTCCCTCTaGAATCAACAGCTGCATTCA +
Preference number: 4 (lower is better)
Translates to: FDFSLNMQRSYMWQVTYLAHLSL*NQQLHS
Trigger: TGAATGCAGCTGTTGATTCCAGAGGGAAAGATGAGC...TAAGTATGTGACCTGCCACATGTAGCTCCTTTGCATGTTAAGTGAGAAGTCAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CCA 90 bp GACTTCTCACTTAACATGCAAAGGAGCTACATGTGGCAGGTCACATACTTAAAAGCTCATCTTTCCCTCTaGAATCAACAGCTGCATTCA +
Preference number: 4 (lower is better)
Translates to: DFSLNMQRSYMWQVTYLKAHLSL*NQQLHS
Trigger: TGAATGCAGCTGTTGATTCCAGAGGGAAAGATGAGC...TTTTAAGTATGTGACCTGCCACATGTAGCTCCTTTGCATGTTAAGTGAGAAGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CCA 90 bp CCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAAGCTATTTACGTCATAAAAATGTCTTaGCCACCTAACTTTTTCTGC +
Preference number: 4 (lower is better)
Translates to: PYTQIRSTGRNTCNKAIYVIKMS*PPNFFC
Trigger: GCAGAAAAAGTTAGGTGGCCAAGACATTTTTATGAC...GTAAATAGCTTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR TCA 90 bp GTATTTATTTGTCAAACACCTAGGACAGAGATCAGAGCTTCTGAAAGTTGGGGTGTACAGAGTCATTTCTaGATCATACTCCTTCCAGGA +
Preference number: 4 (lower is better)
Translates to: VFICQTPRTEIRASESWGVQSHF*IILLPG
Trigger: TCCTGGAAGGAGTATGATTCAGAAATGACTCTGTAC...ACCCCAACTTTCAGAAGCTCTGATCTCTGTCCTAGGTGTTTGACAAATAAATAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR TCA 90 bp TCACTTAACATGCAAAGGAGCTACATGTGGCAGGTCACATACTTAAAACTGAACGTACAGAGTCATTTCTaGATCATACTCCTTCCAGGA +
Preference number: 4 (lower is better)
Translates to: SLNMQRSYMWQVTYLKLNVQSHF*IILLPG
Trigger: TCCTGGAAGGAGTATGATTCAGAAATGACTCTGTAC...GTTCAGTTTTAAGTATGTGACCTGCCACATGTAGCTCCTTTGCATGTTAAGTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR GCA 90 bp CTATTTACTTATGGCAGGGTTTTGACTTCTCACTTAACATGCAAAGGAGCTACAGCGAGTTTTGCCTCCTaGATCTCTTGCAACAGAAAT +
Preference number: 4 (lower is better)
Translates to: LFTYGRVLTSHLTCKGATASFAS*ISCNRN
Trigger: ATTTCTGTTGCAAGAGATGCAGGAGGCAAAACTCGC...TGTAGCTCCTTTGCATGTTAAGTGAGAAGTCAAAACCCTGCCATAAGTAAATAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CCA 90 bp GGTAGAAACACCTGCAACAAAGCTATTTACTTATGGCAGGGTTTTGACTTCTCATTCTTCTTCTCCTTTTaGATGGTGATCCGCTTCTCT +
Preference number: 4 (lower is better)
Translates to: GRNTCNKAIYLWQGFDFSFFFSF*MVIRFS
Trigger: AGAGAAGCGGATCACCATCCAAAAGGAGAAGAAGAA...TGAGAAGTCAAAACCCTGCCATAAGTAAATAGCTTTGTTGCAGGTGTTTCTACC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CCA 90 bp GGTTTTGACTTCTCACTTAACATGCAAAGGAGCTACATGTGGCAGGTCACATACTCCTTAATACATTTCTaGCTCAGAATTCCCATGAAG +
Preference number: 4 (lower is better)
Translates to: GFDFSLNMQRSYMWQVTYSLIHF*LRIPMK
Trigger: CTTCATGGGAATTCTGAGCCAGAAATGTATTAAGGA...GTATGTGACCTGCCACATGTAGCTCCTTTGCATGTTAAGTGAGAAGTCAAAACC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CCA 90 bp TTTGACTTCTCACTTAACATGCAAAGGAGCTACATGTGGCAGGTCACATACTTAAAACTTCCTCTTCTTTaGGGAAAAGGACGAAGCTTG +
Preference number: 4 (lower is better)
Translates to: FDFSLNMQRSYMWQVTYLKLPLL*GKGRSL
Trigger: CAAGCTTCGTCCTTTTCCCCAAAGAAGAGGAAGTTT...TAAGTATGTGACCTGCCACATGTAGCTCCTTTGCATGTTAAGTGAGAAGTCAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CCA 90 bp GGTAGAAACACCTGCAACAAAGCTATTTACTTATGGCAGGGTTTTGACTTCTCAAAACTTCCTCTTCTTTaGGGAAAAGGACGAAGCTTG +
Preference number: 4 (lower is better)
Translates to: GRNTCNKAIYLWQGFDFSKLPLL*GKGRSL
Trigger: CAAGCTTCGTCCTTTTCCCCAAAGAAGAGGAAGTTT...TGAGAAGTCAAAACCCTGCCATAAGTAAATAGCTTTGTTGCAGGTGTTTCTACC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR TCA 90 bp GTATTTATTTGTCAAACACCTAGGACAGAGATCAGAGCTTCTGAAAGTTGGGGTAGAAAGTGTCAAAGTTaGAGATGTCATCAATCCCAG +
Preference number: 4 (lower is better)
Translates to: VFICQTPRTEIRASESWGRKCQS*RCHQSQ
Trigger: CTGGGATTGATGACATCTTCAACTTTGACACTTTCT...ACCCCAACTTTCAGAAGCTCTGATCTCTGTCCTAGGTGTTTGACAAATAAATAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR GCA 90 bp TATGTATTTATTTGTCAAACACCTAGGACAGAGATCAGAGCTTCTGAAAGTTGGGATCCGCTTCTCTATTaGAGCCAAAGAGTCGAAAGT +
Preference number: 4 (lower is better)
Translates to: YVFICQTPRTEIRASESWDPLLY*SQRVES
Trigger: ACTTTCGACTCTTTGGCTGCAATAGAGAAGCGGATC...CCAACTTTCAGAAGCTCTGATCTCTGTCCTAGGTGTTTGACAAATAAATACATA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR GCA 90 bp GGTAGAAACACCTGCAACAAAGCTATTTACTTATGGCAGGGTTTTGACTTCTCAGATAGTCGTTTTGTTTaGTCAAGGAGTTGTGGGTTT +
Preference number: 4 (lower is better)
Translates to: GRNTCNKAIYLWQGFDFSDSRFV*SRSCGF
Trigger: AAACCCACAACTCCTTGAGCAAACAAAACGACTATC...TGAGAAGTCAAAACCCTGCCATAAGTAAATAGCTTTGTTGCAGGTGTTTCTACC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR GCA 90 bp TATGTATTTATTTGTCAAACACCTAGGACAGAGATCAGAGCTTCTGAAAGTTGGTCAGGTCTATTGTGCTaGATTCTGAGAGCATGCTTG +
Preference number: 4 (lower is better)
Translates to: YVFICQTPRTEIRASESWSGLLC*ILRACL
Trigger: CAAGCATGCTCTCAGAATGCAGCACAATAGACCTGA...CCAACTTTCAGAAGCTCTGATCTCTGTCCTAGGTGTTTGACAAATAAATACATA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR GCA 90 bp TATGTATTTATTTGTCAAACACCTAGGACAGAGATCAGAGCTTCTGAAAGTTGGCATTCAGGTCTATTGTaGTGCATTCTGAGAGCATGC +
Preference number: 4 (lower is better)
Translates to: YVFICQTPRTEIRASESWHSGLL*CILRAC
Trigger: GCATGCTCTCAGAATGCAGCACAATAGACCTGAATG...CCAACTTTCAGAAGCTCTGATCTCTGTCCTAGGTGTTTGACAAATAAATACATA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR GCA 90 bp TATGTATTTATTTGTCAAACACCTAGGACAGAGATCAGAGCTTCTGAAAGTTGGCTTGGGAGGAGGAATTaGAAGAGGCTTTTGATTCCA +
Preference number: 4 (lower is better)
Translates to: YVFICQTPRTEIRASESWLGRRN*KRLLIP
Trigger: TGGAATCAAAAGCCTCTTGCAATTCCTCCTCCCAAG...CCAACTTTCAGAAGCTCTGATCTCTGTCCTAGGTGTTTGACAAATAAATACATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CCA 90 bp CTATTTACTTATGGCAGGGTTTTGACTTCTCACTTAACATGCAAAGGAGCTACATTCTTCTTCTCCTTTTaGATGGTGATCCGCTTCTCT +
Preference number: 4 (lower is better)
Translates to: LFTYGRVLTSHLTCKGATFFFSF*MVIRFS
Trigger: AGAGAAGCGGATCACCATCCAAAAGGAGAAGAAGAA...TGTAGCTCCTTTGCATGTTAAGTGAGAAGTCAAAACCCTGCCATAAGTAAATAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CCA 90 bp GACTTCTCACTTAACATGCAAAGGAGCTACATGTGGCAGGTCACATACTTAAAAACATTGGCTTTGGTTTaGAACATTGGAAGCGTTGAA +
Preference number: 4 (lower is better)
Translates to: DFSLNMQRSYMWQVTYLKTLALV*NIGSVE
Trigger: TTCAACGCTTCCAATGTTCCAAACCAAAGCCAATGT...TTTTAAGTATGTGACCTGCCACATGTAGCTCCTTTGCATGTTAAGTGAGAAGTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CCA 90 bp TCACTTAACATGCAAAGGAGCTACATGTGGCAGGTCACATACTTAAAACTGAACACATTGGCTTTGGTTTaGAACATTGGAAGCGTTGAA +
Preference number: 4 (lower is better)
Translates to: SLNMQRSYMWQVTYLKLNTLALV*NIGSVE
Trigger: TTCAACGCTTCCAATGTTCCAAACCAAAGCCAATGT...GTTCAGTTTTAAGTATGTGACCTGCCACATGTAGCTCCTTTGCATGTTAAGTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CCA 90 bp TCACTTAACATGCAAAGGAGCTACATGTGGCAGGTCACATACTTAAAACTGAACACTAAACATTGGCTTTaGTTTGGAACATTGGAAGCG +
Preference number: 4 (lower is better)
Translates to: SLNMQRSYMWQVTYLKLNTKHWL*FGTLEA
Trigger: CGCTTCCAATGTTCCAAACCAAAGCCAATGTTTAGT...GTTCAGTTTTAAGTATGTGACCTGCCACATGTAGCTCCTTTGCATGTTAAGTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CCA 90 bp TTTGACTTCTCACTTAACATGCAAAGGAGCTACATGTGGCAGGTCACATACTTAACTAAACATTGGCTTTaGTTTGGAACATTGGAAGCG +
Preference number: 4 (lower is better)
Translates to: FDFSLNMQRSYMWQVTYLTKHWL*FGTLEA
Trigger: CGCTTCCAATGTTCCAAACCAAAGCCAATGTTTAGT...TAAGTATGTGACCTGCCACATGTAGCTCCTTTGCATGTTAAGTGAGAAGTCAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR TCA 90 bp GGTAGAAACACCTGCAACAAAGCTATTTACTTATGGCAGGGTTTTGACTTCTCAAAAACTCATCCACAATaGAGCCTCTTGCCAATATTT +
Preference number: 4 (lower is better)
Translates to: GRNTCNKAIYLWQGFDFSKTHPQ*SLLPIF
Trigger: AAATATTGGCAAGAGGCTTCATTGTGGATGAGTTTT...TGAGAAGTCAAAACCCTGCCATAAGTAAATAGCTTTGTTGCAGGTGTTTCTACC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR TCA 90 bp TCACTTAACATGCAAAGGAGCTACATGTGGCAGGTCACATACTTAAAACTGAACCAAAGATGGCATAAATaGACATCACCAGAAAGAGAA +
Preference number: 4 (lower is better)
Translates to: SLNMQRSYMWQVTYLKLNQRWHK*TSPERE
Trigger: TTCTCTTTCTGGTGATGTTCATTTATGCCATCTTTG...GTTCAGTTTTAAGTATGTGACCTGCCACATGTAGCTCCTTTGCATGTTAAGTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CCA 90 bp TATGTATTTATTTGTCAAACACCTAGGACAGAGATCAGAGCTTCTGAAAGTTGGGAGTTATCCATATTGTaGTGTTCCATGGCCAAGAAG +
Preference number: 4 (lower is better)
Translates to: YVFICQTPRTEIRASESWELSIL*CSMAKK
Trigger: CTTCTTGGCCATGGAACACCACAATATGGATAACTC...CCAACTTTCAGAAGCTCTGATCTCTGTCCTAGGTGTTTGACAAATAAATACATA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CCA 90 bp GTATTTATTTGTCAAACACCTAGGACAGAGATCAGAGCTTCTGAAAGTTGGGGTGCTTTTGAGGCTTCTTaGTTCCTAACTTTTTCATTG +
Preference number: 4 (lower is better)
Translates to: VFICQTPRTEIRASESWGAFEAS*FLTFSL
Trigger: CAATGAAAAAGTTAGGAACCAAGAAGCCTCAAAAGC...ACCCCAACTTTCAGAAGCTCTGATCTCTGTCCTAGGTGTTTGACAAATAAATAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR TCA 90 bp CTATTTACTTATGGCAGGGTTTTGACTTCTCACTTAACATGCAAAGGAGCTACAAAAACTCATCCACAATaGAGCCTCTTGCCAATATTT +
Preference number: 4 (lower is better)
Translates to: LFTYGRVLTSHLTCKGATKTHPQ*SLLPIF
Trigger: AAATATTGGCAAGAGGCTTCATTGTGGATGAGTTTT...TGTAGCTCCTTTGCATGTTAAGTGAGAAGTCAAAACCCTGCCATAAGTAAATAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CCA 90 bp CTATTTACTTATGGCAGGGTTTTGACTTCTCACTTAACATGCAAAGGAGCTACAGTCATAAAAATGTCTTaGCCACCTAACTTTTTCTGC +
Preference number: 4 (lower is better)
Translates to: LFTYGRVLTSHLTCKGATVIKMS*PPNFFC
Trigger: GCAGAAAAAGTTAGGTGGCCAAGACATTTTTATGAC...TGTAGCTCCTTTGCATGTTAAGTGAGAAGTCAAAACCCTGCCATAAGTAAATAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR GCA 90 bp TATGTATTTATTTGTCAAACACCTAGGACAGAGATCAGAGCTTCTGAAAGTTGGCACAATGAAGCCTCTTaGCAATATTTTAATCACAGC +
Preference number: 4 (lower is better)
Translates to: YVFICQTPRTEIRASESWHNEAS*QYFNHS
Trigger: GCTGTGATTAAAATATTGGCAAGAGGCTTCATTGTG...CCAACTTTCAGAAGCTCTGATCTCTGTCCTAGGTGTTTGACAAATAAATACATA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CCA 90 bp TATGTATTTATTTGTCAAACACCTAGGACAGAGATCAGAGCTTCTGAAAGTTGGGCTTTTGAGGCTTCTTaGTTCCTAACTTTTTCATTG +
Preference number: 4 (lower is better)
Translates to: YVFICQTPRTEIRASESWAFEAS*FLTFSL
Trigger: CAATGAAAAAGTTAGGAACCAAGAAGCCTCAAAAGC...CCAACTTTCAGAAGCTCTGATCTCTGTCCTAGGTGTTTGACAAATAAATACATA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS TCA 90 bp GCAACCAGAGCCTCCTTTTCCTCCCTCAACAGCTGCTGGGCTTCCTaGAACATCTTCTCCTTGGCCTCTGTCTCGGCAGCGACATTTCTG +
Preference number: 5 (lower is better)
Translates to: ATRASFSSLNSCWAS*NIFSLASVSAATFL
Trigger: CAGAAATGTCGCTGCCGAGACAGAGGCCAAGGAGAAGATGTTTCAGGAAGCCCAGCAGCTGTTGAGGGAGGAAAAGGAGGCTCTGGTTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS GCA 90 bp TCCTGCATGGTGATGGTTAAGATACTGACGGCACTCAGCGCTCTCTaGCTATGGAGGGGGTCCACGTGCTCATCAAAGAGTTCTACGGGC +
Preference number: 5 (lower is better)
Translates to: SCMVMVKILTALSAL*LWRGSTCSSKSSTG
Trigger: GCCCGTAGAACTCTTTGATGAGCACGTGGACCCCCTCCATAGGCAGAGAGCGCTGAGTGCCGTCAGTATCTTAACCATCACCATGCAGGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS GCA 90 bp CAGATGGTGATGGCCAGCTCAGTGAAGGGGTCTGTCATGATAGTCTaGAGGACCTTCTTTATGCACAGCCACGGAGGGCTACATTCCCAC +
Preference number: 5 (lower is better)
Translates to: QMVMASSVKGSVMIV*RTFFMHSHGGLHSH
Trigger: GTGGGAATGTAGCCCTCCGTGGCTGTGCATAAAGAAGGTCCTGCAGACTATCATGACAGACCCCTTCACTGAGCTGGCCATCACCATCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS GCA 90 bp ATACTGACGGCACTCAGCGCTCTCTGCCTATGGAGGGGGTCCACGTaGTCATCAAAGAGTTCTACGGGCAAGTTCTGGGATAGTCGTTTT +
Preference number: 5 (lower is better)
Translates to: ILTALSALCLWRGST*SSKSSTGKFWDSRF
Trigger: AAAACGACTATCCCAGAACTTGCCCGTAGAACTCTTTGATGAGCACGTGGACCCCCTCCATAGGCAGAGAGCGCTGAGTGCCGTCAGTAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS CCA 90 bp ATGGTGATGGTTAAGATACTGACGGCACTCAGCGCTCTCTGCCTATaGAGGGGGTCCACGTGCTCATCAAAGAGTTCTACGGGCAAGTTC +
Preference number: 5 (lower is better)
Translates to: MVMVKILTALSALCL*RGSTCSSKSSTGKF
Trigger: GAACTTGCCCGTAGAACTCTTTGATGAGCACGTGGACCCCCTCCATAGGCAGAGAGCGCTGAGTGCCGTCAGTATCTTAACCATCACCAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS CCA 90 bp ATCACATTCACCACAACATTCCATATCGTCCTCTTCTTTTGCCAGTaGGGCCAGTGGAGCCCCGGCCTGCCCAGTGTACAGAGTCATTTC +
Preference number: 5 (lower is better)
Translates to: ITFTTTFHIVLFFCQ*GQWSPGLPSVQSHF
Trigger: GAAATGACTCTGTACACTGGGCAGGCCGGGGCTCCACTGGCCCCACTGGCAAAAGAAGAGGACGATATGGAATGTTGTGGTGAATGTGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS GCA 90 bp TATGCACAGCCACGGAGGGCTACATTCCCACACCAGGTACTTGGATaGCAAGTTTTTCCCACACGGGAAACAAGGCTCCTGGGATTTTTC +
Preference number: 5 (lower is better)
Translates to: YAQPRRATFPHQVLG*QVFPTRETRLLGFF
Trigger: GAAAAATCCCAGGAGCCTTGTTTCCCGTGTGGGAAAAACTTGGCATCCAAGTACCTGGTGTGGGAATGTAGCCCTCCGTGGCTGTGCATA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS GCA 90 bp ATCCAGGGTGGCTGTGTCTCTACTCTCACCAGCAAAGCTTTCTGTTaGCTCATTTGGCTTTGGCGAGTTTTGCCTCCTGCATCTCTTGCA +
Preference number: 5 (lower is better)
Translates to: IQGGCVSTLTSKAFC*LIWLWRVLPPASLA
Trigger: TGCAAGAGATGCAGGAGGCAAAACTCGCCAAAGCCAAATGAGGCAACAGAAAGCTTTGCTGGTGAGAGTAGAGACACAGCCACCCTGGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CAA 90 bp TTGAGCCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAAGCTAAGAAGCAGACCGATGTaGAAGAGAGAGGGGAGAGAC +
Preference number: 5 (lower is better)
Translates to: LSHTPKSAALVETPATKLRSRPM*KREGRD
Trigger: GTCTCTCCCCTCTCTCTTCAACATCGGTCTGCTTCT...TAGCTTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGGCTCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CAA 90 bp TTTGAGCCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAAGCTAGAAGCAGACCGATGTaGAAGAGAGAGGGGAGAGAC +
Preference number: 5 (lower is better)
Translates to: FEPYTQIRSTGRNTCNKARSRPM*KREGRD
Trigger: GTCTCTCCCCTCTCTCTTCAACATCGGTCTGCTTCT...AGCTTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGGCTCAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CAA 90 bp TTTGAGCCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAAGCTTCCCACACCAGGTACTaGGATGCCAAGTTTTTCCCA +
Preference number: 5 (lower is better)
Translates to: FEPYTQIRSTGRNTCNKASHTRY*DAKFFP
Trigger: TGGGAAAAACTTGGCATCCAAGTACCTGGTGTGGGA...AGCTTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGGCTCAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CAA 90 bp AGGTTTGAGCCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAACAGGATTTGGCTAACTaGAAGACCCTCAGCACTCTG +
Preference number: 5 (lower is better)
Translates to: RFEPYTQIRSTGRNTCNKQDLAN*KTLSTL
Trigger: CAGAGTGCTGAGGGTCTTCAAGTTAGCCAAATCCTG...TTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGGCTCAAACCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CAA 90 bp TTGAGCCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAAGCTACAGGATTTGGCTAACTaGAAGACCCTCAGCACTCTG +
Preference number: 5 (lower is better)
Translates to: LSHTPKSAALVETPATKLQDLAN*KTLSTL
Trigger: CAGAGTGCTGAGGGTCTTCAAGTTAGCCAAATCCTG...TAGCTTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGGCTCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CAA 90 bp AGGTTTGAGCCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAACAGCAAAGCTTTCTGTaGCCTCATTTGGCTTTGGCG +
Preference number: 5 (lower is better)
Translates to: RFEPYTQIRSTGRNTCNKQQSFL*PHLALA
Trigger: CGCCAAAGCCAAATGAGGCAACAGAAAGCTTTGCTG...TTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGGCTCAAACCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CAA 90 bp TTTGAGCCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAAGCTCAGCAAAGCTTTCTGTaGCCTCATTTGGCTTTGGCG +
Preference number: 5 (lower is better)
Translates to: FEPYTQIRSTGRNTCNKAQQSFL*PHLALA
Trigger: CGCCAAAGCCAAATGAGGCAACAGAAAGCTTTGCTG...AGCTTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGGCTCAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CAA 90 bp AGGTTTGAGCCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAAATACAACTGAGGCCCTaGGGAAAGCATCGATCTGGT +
Preference number: 5 (lower is better)
Translates to: RFEPYTQIRSTGRNTCNKIQLRP*GKHRSG
Trigger: ACCAGATCGATGCTTTCCCAAGGGCCTCAGTTGTAT...TTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGGCTCAAACCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CAA 90 bp TTTGACTTCTCACTTAACATGCAAAGGAGCTACATGTGGCAGGTCACATACTTAGATTCCAGCATGGGGTaGAGGAGAGCATCCCAGCCG +
Preference number: 5 (lower is better)
Translates to: FDFSLNMQRSYMWQVTYLDSSMG*RRASQP
Trigger: CGGCTGGGATGCTCTCCTCAACCCCATGCTGGAATC...TAAGTATGTGACCTGCCACATGTAGCTCCTTTGCATGTTAAGTGAGAAGTCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS CCA 90 bp GGCTGTGTCTCTACTCTCACCAGCAAAGCTTTCTGTTGCCTCATTTaGCTTTGGCGAGTTTTGCCTCCTGCATCTCTTGCAACAGAAATT +
Preference number: 5 (lower is better)
Translates to: GCVSTLTSKAFCCLI*LWRVLPPASLATEI
Trigger: AATTTCTGTTGCAAGAGATGCAGGAGGCAAAACTCGCCAAAGCCAAATGAGGCAACAGAAAGCTTTGCTGGTGAGAGTAGAGACACAGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS CCA 90 bp ATCTTGGGCACATCCAAGCTAGACAAGTCTCCATTGCAAAACACCTaGAGCGATGAACTTGACCTGCCTTTCAGCTTCAGCTTGATCATC +
Preference number: 5 (lower is better)
Translates to: ILGTSKLDKSPLQNT*SDELDLPFSFSLII
Trigger: GATGATCAAGCTGAAGCTGAAAGGCAGGTCAAGTTCATCGCTCCAGGTGTTTTGCAATGGAGACTTGTCTAGCTTGGATGTGCCCAAGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CAA 90 bp TTGAGCCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAAGCTAGGCTCAGTTGCTGCCTaGTCTTTGGATTTCTTCTTC +
Preference number: 5 (lower is better)
Translates to: LSHTPKSAALVETPATKLGSVAA*SLDFFF
Trigger: GAAGAAGAAATCCAAAGACAAGGCAGCAACTGAGCC...TAGCTTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGGCTCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CAA 90 bp CCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAAGCTATTTACCTTCTCCCAGGAGTCTaGAGTCATAACCCGGAACAT +
Preference number: 5 (lower is better)
Translates to: PYTQIRSTGRNTCNKAIYLLPGV*SHNPEH
Trigger: ATGTTCCGGGTTATGACTCAAGACTCCTGGGAGAAG...GTAAATAGCTTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CAA 90 bp AGGTTTGAGCCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAACCATCCTTTTCCTCATaGCTGAAGGAATTGAGCAGC +
Preference number: 5 (lower is better)
Translates to: RFEPYTQIRSTGRNTCNKPSFSS*LKELSS
Trigger: GCTGCTCAATTCCTTCAGCAATGAGGAAAAGGATGG...TTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGGCTCAAACCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CAA 90 bp CTATTTACTTATGGCAGGGTTTTGACTTCTCACTTAACATGCAAAGGAGCTACAGATTCCAGCATGGGGTaGAGGAGAGCATCCCAGCCG +
Preference number: 5 (lower is better)
Translates to: LFTYGRVLTSHLTCKGATDSSMG*RRASQP
Trigger: CGGCTGGGATGCTCTCCTCAACCCCATGCTGGAATC...TGTAGCTCCTTTGCATGTTAAGTGAGAAGTCAAAACCCTGCCATAAGTAAATAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CAA 90 bp TTTGAGCCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAAGCTCTAGACAAGTCTCCATaGCAAAACACCTGGAGCGAT +
Preference number: 5 (lower is better)
Translates to: FEPYTQIRSTGRNTCNKALDKSP*QNTWSD
Trigger: ATCGCTCCAGGTGTTTTGCAATGGAGACTTGTCTAG...AGCTTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGGCTCAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CAA 90 bp AGGTTTGAGCCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAACTAGACAAGTCTCCATaGCAAAACACCTGGAGCGAT +
Preference number: 5 (lower is better)
Translates to: RFEPYTQIRSTGRNTCNKLDKSP*QNTWSD
Trigger: ATCGCTCCAGGTGTTTTGCAATGGAGACTTGTCTAG...TTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGGCTCAAACCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS GCA 90 bp TTTGGATTTCTTCTTCTCCTTTTGGATGGTGATCCGCTTCTCTATTaGAGCCAAAGAGTCGAAAGTGAAGGGGCGGAAATTCCTCTCGTC +
Preference number: 5 (lower is better)
Translates to: FGFLLLLLDGDPLLY*SQRVESEGAEIPLV
Trigger: GACGAGAGGAATTTCCGCCCCTTCACTTTCGACTCTTTGGCTGCAATAGAGAAGCGGATCACCATCCAAAAGGAGAAGAAGAAATCCAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS CCA 90 bp AGGTACTTGGATGCCAAGTTTTTCCCACACGGGAAACAAGGCTCCTaGGATTTTTCTTGTTCCTGCATGGTGATGGTTAAGATACTGACG +
Preference number: 5 (lower is better)
Translates to: RYLDAKFFPHGKQGS*DFSCSCMVMVKILT
Trigger: CGTCAGTATCTTAACCATCACCATGCAGGAACAAGAAAAATCCCAGGAGCCTTGTTTCCCGTGTGGGAAAAACTTGGCATCCAAGTACCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CAA 90 bp TTTGAGCCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAAGCTTTTCTTCTTCTCCTTTaGGATGGTGATCCGCTTCTC +
Preference number: 5 (lower is better)
Translates to: FEPYTQIRSTGRNTCNKAFLLLL*DGDPLL
Trigger: GAGAAGCGGATCACCATCCAAAAGGAGAAGAAGAAA...AGCTTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGGCTCAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CAA 90 bp GTATTTATTTGTCAAACACCTAGGACAGAGATCAGAGCTTCTGAAAGTTGGGGTGAGGCTGGGGCTCAGTaGCTGCCTTGTCTTTGGATT +
Preference number: 5 (lower is better)
Translates to: VFICQTPRTEIRASESWGEAGAQ*LPCLWI
Trigger: AATCCAAAGACAAGGCAGCAACTGAGCCCCAGCCTC...ACCCCAACTTTCAGAAGCTCTGATCTCTGTCCTAGGTGTTTGACAAATAAATAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CAA 90 bp TTGAGCCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAAGCTATTAAATGTGGTTTTATaGCACGTGGAACCATCGGGG +
Preference number: 5 (lower is better)
Translates to: LSHTPKSAALVETPATKLLNVVL*HVEPSG
Trigger: CCCCGATGGTTCCACGTGCAATAAAACCACATTTAA...TAGCTTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGGCTCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CAA 90 bp GGTTTTGACTTCTCACTTAACATGCAAAGGAGCTACATGTGGCAGGTCACATACCTTCTCCCAGGAGTCTaGAGTCATAACCCGGAACAT +
Preference number: 5 (lower is better)
Translates to: GFDFSLNMQRSYMWQVTYLLPGV*SHNPEH
Trigger: ATGTTCCGGGTTATGACTCAAGACTCCTGGGAGAAG...GTATGTGACCTGCCACATGTAGCTCCTTTGCATGTTAAGTGAGAAGTCAAAACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CAA 90 bp CCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAAGCTATTTACGCCAAGAAGACAGTATaGACGATGATGCAGATGGTG +
Preference number: 5 (lower is better)
Translates to: PYTQIRSTGRNTCNKAIYAKKTV*TMMQMV
Trigger: CACCATCTGCATCATCGTCAATACTGTCTTCTTGGC...GTAAATAGCTTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CAA 90 bp CCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAAGCTATTTACGAGGTGGAGCAAGTCTaGTTAAACTTGGCACCAAAG +
Preference number: 5 (lower is better)
Translates to: PYTQIRSTGRNTCNKAIYEVEQV*LNLAPK
Trigger: CTTTGGTGCCAAGTTTAACAAGACTTGCTCCACCTC...GTAAATAGCTTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CAA 90 bp CCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAAGCTATTTACGAGCCTCTCTTCACTTaGGAAAACCAGTTCATCCCA +
Preference number: 5 (lower is better)
Translates to: PYTQIRSTGRNTCNKAIYEPLFT*ENQFIP
Trigger: TGGGATGAACTGGTTTTCCAAAGTGAAGAGAGGCTC...GTAAATAGCTTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS GCA 90 bp TCATCAAAGAGTTCTACGGGCAAGTTCTGGGATAGTCGTTTTGTTTaGTCAAGGAGTTGTGGGTTTTTAGAGGCATCGTCCTCTGAATCG +
Preference number: 5 (lower is better)
Translates to: SSKSSTGKFWDSRFV*SRSCGFLEASSSES
Trigger: CGATTCAGAGGACGATGCCTCTAAAAACCCACAACTCCTTGAGCAAACAAAACGACTATCCCAGAACTTGCCCGTAGAACTCTTTGATGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CAA 90 bp GTATTTATTTGTCAAACACCTAGGACAGAGATCAGAGCTTCTGAAAGTTGGGGTAGGGCTAGCTGCACTTaGGTTTTCCTGGTCTCTCCT +
Preference number: 5 (lower is better)
Translates to: VFICQTPRTEIRASESWGRASCT*VFLVSP
Trigger: AGGAGAGACCAGGAAAACCAAAGTGCAGCTAGCCCT...ACCCCAACTTTCAGAAGCTCTGATCTCTGTCCTAGGTGTTTGACAAATAAATAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CAA 90 bp GACTTCTCACTTAACATGCAAAGGAGCTACATGTGGCAGGTCACATACTTAAAATTGCCTCATTTGGCTTaGGCGAGTTTTGCCTCCTGC +
Preference number: 5 (lower is better)
Translates to: DFSLNMQRSYMWQVTYLKLPHLA*ASFASC
Trigger: GCAGGAGGCAAAACTCGCCAAAGCCAAATGAGGCAA...TTTTAAGTATGTGACCTGCCACATGTAGCTCCTTTGCATGTTAAGTGAGAAGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CAA 90 bp AGGTTTGAGCCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAACTCAAAGCAAAGACTTaGATGAGACACTCTACGGTA +
Preference number: 5 (lower is better)
Translates to: RFEPYTQIRSTGRNTCNKLKAKT*MRHSTV
Trigger: TACCGTAGAGTGTCTCATCAAAGTCTTTGCTTTGAG...TTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGGCTCAAACCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CAA 90 bp GGTAGAAACACCTGCAACAAAGCTATTTACTTATGGCAGGGTTTTGACTTCTCACTGCTGACAGCTCTCTaGGGAGGAGGAATTGCAAGA +
Preference number: 5 (lower is better)
Translates to: GRNTCNKAIYLWQGFDFSLLTAL*GGGIAR
Trigger: TCTTGCAATTCCTCCTCCCAAGAGAGCTGTCAGCAG...TGAGAAGTCAAAACCCTGCCATAAGTAAATAGCTTTGTTGCAGGTGTTTCTACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CAA 90 bp TATGTATTTATTTGTCAAACACCTAGGACAGAGATCAGAGCTTCTGAAAGTTGGGAGGCTGGGGCTCAGTaGCTGCCTTGTCTTTGGATT +
Preference number: 5 (lower is better)
Translates to: YVFICQTPRTEIRASESWEAGAQ*LPCLWI
Trigger: AATCCAAAGACAAGGCAGCAACTGAGCCCCAGCCTC...CCAACTTTCAGAAGCTCTGATCTCTGTCCTAGGTGTTTGACAAATAAATACATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CAA 90 bp TTTGAGCCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAAGCTTTTACAAAGCAATCCTaGTTGGAAAAAGCGTTAGGG +
Preference number: 5 (lower is better)
Translates to: FEPYTQIRSTGRNTCNKAFTKQS*LEKALG
Trigger: CCCTAACGCTTTTTCCAACAAGGATTGCTTTGTAAA...AGCTTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGGCTCAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CAA 90 bp AGGTTTGAGCCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAATTTACAAAGCAATCCTaGTTGGAAAAAGCGTTAGGG +
Preference number: 5 (lower is better)
Translates to: RFEPYTQIRSTGRNTCNKFTKQS*LEKALG
Trigger: CCCTAACGCTTTTTCCAACAAGGATTGCTTTGTAAA...TTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGGCTCAAACCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CAA 90 bp GGTTTTGACTTCTCACTTAACATGCAAAGGAGCTACATGTGGCAGGTCACATACTCTGGGATAGTCGTTTaGTTTGCTCAAGGAGTTGTG +
Preference number: 5 (lower is better)
Translates to: GFDFSLNMQRSYMWQVTYSGIVV*FAQGVV
Trigger: CACAACTCCTTGAGCAAACAAAACGACTATCCCAGA...GTATGTGACCTGCCACATGTAGCTCCTTTGCATGTTAAGTGAGAAGTCAAAACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CAA 90 bp GACTTCTCACTTAACATGCAAAGGAGCTACATGTGGCAGGTCACATACTTAAAATCCCACACCAGGTACTaGGATGCCAAGTTTTTCCCA +
Preference number: 5 (lower is better)
Translates to: DFSLNMQRSYMWQVTYLKSHTRY*DAKFFP
Trigger: TGGGAAAAACTTGGCATCCAAGTACCTGGTGTGGGA...TTTTAAGTATGTGACCTGCCACATGTAGCTCCTTTGCATGTTAAGTGAGAAGTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CAA 90 bp GACTTCTCACTTAACATGCAAAGGAGCTACATGTGGCAGGTCACATACTTAAAACCCACGTTGTCAAAGTaGACATTCGGGACTTTCCAC +
Preference number: 5 (lower is better)
Translates to: DFSLNMQRSYMWQVTYLKPTLSK*TFGTFH
Trigger: GTGGAAAGTCCCGAATGTCAACTTTGACAACGTGGG...TTTTAAGTATGTGACCTGCCACATGTAGCTCCTTTGCATGTTAAGTGAGAAGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CAA 90 bp CCATACACCCAAATCCGCAGCACTGGTAGAAACACCTGCAACAAAGCTATTTACCTCAAAGCAAAGACTTaGATGAGACACTCTACGGTA +
Preference number: 5 (lower is better)
Translates to: PYTQIRSTGRNTCNKAIYLKAKT*MRHSTV
Trigger: TACCGTAGAGTGTCTCATCAAAGTCTTTGCTTTGAG...GTAAATAGCTTTGTTGCAGGTGTTTCTACCAGTGCTGCGGATTTGGGTGTATGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CAA 90 bp GGTTTTGACTTCTCACTTAACATGCAAAGGAGCTACATGTGGCAGGTCACATACTCCTCTGTGGCTGTGTaGAAGTTCTCTAGAATCACA +
Preference number: 5 (lower is better)
Translates to: GFDFSLNMQRSYMWQVTYSSVAV*KFSRIT
Trigger: TGTGATTCTAGAGAACTTCAACACAGCCACAGAGGA...GTATGTGACCTGCCACATGTAGCTCCTTTGCATGTTAAGTGAGAAGTCAAAACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CAA 90 bp GTATTTATTTGTCAAACACCTAGGACAGAGATCAGAGCTTCTGAAAGTTGGGGTGGAAAAGGACGAAGCTaGGAGGGAATTAAGGGAAGT +
Preference number: 5 (lower is better)
Translates to: VFICQTPRTEIRASESWGGKGRS*EGIKGS
Trigger: ACTTCCCTTAATTCCCTCCAAGCTTCGTCCTTTTCC...ACCCCAACTTTCAGAAGCTCTGATCTCTGTCCTAGGTGTTTGACAAATAAATAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CAA 90 bp TTTGACTTCTCACTTAACATGCAAAGGAGCTACATGTGGCAGGTCACATACTTAGCCAAGAAGACAGTATaGACGATGATGCAGATGGTG +
Preference number: 5 (lower is better)
Translates to: FDFSLNMQRSYMWQVTYLAKKTV*TMMQMV
Trigger: CACCATCTGCATCATCGTCAATACTGTCTTCTTGGC...TAAGTATGTGACCTGCCACATGTAGCTCCTTTGCATGTTAAGTGAGAAGTCAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CAA 90 bp GGTAGAAACACCTGCAACAAAGCTATTTACTTATGGCAGGGTTTTGACTTCTCAGAGGTGGAGCAAGTCTaGTTAAACTTGGCACCAAAG +
Preference number: 5 (lower is better)
Translates to: GRNTCNKAIYLWQGFDFSEVEQV*LNLAPK
Trigger: CTTTGGTGCCAAGTTTAACAAGACTTGCTCCACCTC...TGAGAAGTCAAAACCCTGCCATAAGTAAATAGCTTTGTTGCAGGTGTTTCTACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CAA 90 bp TATGTATTTATTTGTCAAACACCTAGGACAGAGATCAGAGCTTCTGAAAGTTGGAGGGCTAGCTGCACTTaGGTTTTCCTGGTCTCTCCT +
Preference number: 5 (lower is better)
Translates to: YVFICQTPRTEIRASESWRASCT*VFLVSP
Trigger: AGGAGAGACCAGGAAAACCAAAGTGCAGCTAGCCCT...CCAACTTTCAGAAGCTCTGATCTCTGTCCTAGGTGTTTGACAAATAAATACATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CAA 90 bp GGTAGAAACACCTGCAACAAAGCTATTTACTTATGGCAGGGTTTTGACTTCTCATCTTGGGAGGAGGAATaGCAAGAGGCTTTTGATTCC +
Preference number: 5 (lower is better)
Translates to: GRNTCNKAIYLWQGFDFSSWEEE*QEAFDS
Trigger: GGAATCAAAAGCCTCTTGCAATTCCTCCTCCCAAGA...TGAGAAGTCAAAACCCTGCCATAAGTAAATAGCTTTGTTGCAGGTGTTTCTACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CAA 90 bp TATGTATTTATTTGTCAAACACCTAGGACAGAGATCAGAGCTTCTGAAAGTTGGCTGCTGACAGCTCTCTaGGGAGGAGGAATTGCAAGA +
Preference number: 5 (lower is better)
Translates to: YVFICQTPRTEIRASESWLLTAL*GGGIAR
Trigger: TCTTGCAATTCCTCCTCCCAAGAGAGCTGTCAGCAG...CCAACTTTCAGAAGCTCTGATCTCTGTCCTAGGTGTTTGACAAATAAATACATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CAA 90 bp TCACTTAACATGCAAAGGAGCTACATGTGGCAGGTCACATACTTAAAACTGAACTCTGGGATAGTCGTTTaGTTTGCTCAAGGAGTTGTG +
Preference number: 5 (lower is better)
Translates to: SLNMQRSYMWQVTYLKLNSGIVV*FAQGVV
Trigger: CACAACTCCTTGAGCAAACAAAACGACTATCCCAGA...GTTCAGTTTTAAGTATGTGACCTGCCACATGTAGCTCCTTTGCATGTTAAGTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CAA 90 bp GGTAGAAACACCTGCAACAAAGCTATTTACTTATGGCAGGGTTTTGACTTCTCATCTAGCGCAATGATCTaGAGACACATTTCCGCTATG +
Preference number: 5 (lower is better)
Translates to: GRNTCNKAIYLWQGFDFSSSAMI*RHISAM
Trigger: CATAGCGGAAATGTGTCTCAAGATCATTGCGCTAGA...TGAGAAGTCAAAACCCTGCCATAAGTAAATAGCTTTGTTGCAGGTGTTTCTACC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CAA 90 bp TCACTTAACATGCAAAGGAGCTACATGTGGCAGGTCACATACTTAAAACTGAACTCTAGCGCAATGATCTaGAGACACATTTCCGCTATG +
Preference number: 5 (lower is better)
Translates to: SLNMQRSYMWQVTYLKLNSSAMI*RHISAM
Trigger: CATAGCGGAAATGTGTCTCAAGATCATTGCGCTAGA...GTTCAGTTTTAAGTATGTGACCTGCCACATGTAGCTCCTTTGCATGTTAAGTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CAA 90 bp CTATTTACTTATGGCAGGGTTTTGACTTCTCACTTAACATGCAAAGGAGCTACAAGGTTTTTAGACAGTTaGTGGAAGAGCACGTCAGCG +
Preference number: 5 (lower is better)
Translates to: LFTYGRVLTSHLTCKGATRFLDS*WKSTSA
Trigger: CGCTGACGTGCTCTTCCACAAACTGTCTAAAAACCT...TGTAGCTCCTTTGCATGTTAAGTGAGAAGTCAAAACCCTGCCATAAGTAAATAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CAA 90 bp CTATTTACTTATGGCAGGGTTTTGACTTCTCACTTAACATGCAAAGGAGCTACACCATCCTTTTCCTCATaGCTGAAGGAATTGAGCAGC +
Preference number: 5 (lower is better)
Translates to: LFTYGRVLTSHLTCKGATPSFSS*LKELSS
Trigger: GCTGCTCAATTCCTTCAGCAATGAGGAAAAGGATGG...TGTAGCTCCTTTGCATGTTAAGTGAGAAGTCAAAACCCTGCCATAAGTAAATAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CAA 90 bp TATGTATTTATTTGTCAAACACCTAGGACAGAGATCAGAGCTTCTGAAAGTTGGATACAACTGAGGCCCTaGGGAAAGCATCGATCTGGT +
Preference number: 5 (lower is better)
Translates to: YVFICQTPRTEIRASESWIQLRP*GKHRSG
Trigger: ACCAGATCGATGCTTTCCCAAGGGCCTCAGTTGTAT...CCAACTTTCAGAAGCTCTGATCTCTGTCCTAGGTGTTTGACAAATAAATACATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CAA 90 bp TATGTATTTATTTGTCAAACACCTAGGACAGAGATCAGAGCTTCTGAAAGTTGGCCCACGTTGTCAAAGTaGACATTCGGGACTTTCCAC +
Preference number: 5 (lower is better)
Translates to: YVFICQTPRTEIRASESWPTLSK*TFGTFH
Trigger: GTGGAAAGTCCCGAATGTCAACTTTGACAACGTGGG...CCAACTTTCAGAAGCTCTGATCTCTGTCCTAGGTGTTTGACAAATAAATACATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CAA 90 bp TCACTTAACATGCAAAGGAGCTACATGTGGCAGGTCACATACTTAAAACTGAACATTTTCTTCACTTCGTaGGGCTGGCCTTCAGATTCA +
Preference number: 5 (lower is better)
Translates to: SLNMQRSYMWQVTYLKLNIFFTS*GWPSDS
Trigger: TGAATCTGAAGGCCAGCCCAACGAAGTGAAGAAAAT...GTTCAGTTTTAAGTATGTGACCTGCCACATGTAGCTCCTTTGCATGTTAAGTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CAA 90 bp CTATTTACTTATGGCAGGGTTTTGACTTCTCACTTAACATGCAAAGGAGCTACAGAGCCTCTCTTCACTTaGGAAAACCAGTTCATCCCA +
Preference number: 5 (lower is better)
Translates to: LFTYGRVLTSHLTCKGATEPLFT*ENQFIP
Trigger: TGGGATGAACTGGTTTTCCAAAGTGAAGAGAGGCTC...TGTAGCTCCTTTGCATGTTAAGTGAGAAGTCAAAACCCTGCCATAAGTAAATAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CAA 90 bp TCACTTAACATGCAAAGGAGCTACATGTGGCAGGTCACATACTTAAAACTGAACGTTGCTGCCTTGTCTTaGGATTTCTTCTTCTCCTTT +
Preference number: 5 (lower is better)
Translates to: SLNMQRSYMWQVTYLKLNVAALS*DFFFSF
Trigger: AAAGGAGAAGAAGAAATCCAAAGACAAGGCAGCAAC...GTTCAGTTTTAAGTATGTGACCTGCCACATGTAGCTCCTTTGCATGTTAAGTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CAA 90 bp TTTGACTTCTCACTTAACATGCAAAGGAGCTACATGTGGCAGGTCACATACTTAGTTGCTGCCTTGTCTTaGGATTTCTTCTTCTCCTTT +
Preference number: 5 (lower is better)
Translates to: FDFSLNMQRSYMWQVTYLVAALS*DFFFSF
Trigger: AAAGGAGAAGAAGAAATCCAAAGACAAGGCAGCAAC...TAAGTATGTGACCTGCCACATGTAGCTCCTTTGCATGTTAAGTGAGAAGTCAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CAA 90 bp CTATTTACTTATGGCAGGGTTTTGACTTCTCACTTAACATGCAAAGGAGCTACATTAAATGTGGTTTTATaGCACGTGGAACCATCGGGG +
Preference number: 5 (lower is better)
Translates to: LFTYGRVLTSHLTCKGATLNVVL*HVEPSG
Trigger: CCCCGATGGTTCCACGTGCAATAAAACCACATTTAA...TGTAGCTCCTTTGCATGTTAAGTGAGAAGTCAAAACCCTGCCATAAGTAAATAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CAA 90 bp TATGTATTTATTTGTCAAACACCTAGGACAGAGATCAGAGCTTCTGAAAGTTGGGGAAAAGGACGAAGCTaGGAGGGAATTAAGGGAAGT +
Preference number: 5 (lower is better)
Translates to: YVFICQTPRTEIRASESWGKGRS*EGIKGS
Trigger: ACTTCCCTTAATTCCCTCCAAGCTTCGTCCTTTTCC...CCAACTTTCAGAAGCTCTGATCTCTGTCCTAGGTGTTTGACAAATAAATACATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CAA 90 bp TATGTATTTATTTGTCAAACACCTAGGACAGAGATCAGAGCTTCTGAAAGTTGGAGGTTTTTAGACAGTTaGTGGAAGAGCACGTCAGCG +
Preference number: 5 (lower is better)
Translates to: YVFICQTPRTEIRASESWRFLDS*WKSTSA
Trigger: CGCTGACGTGCTCTTCCACAAACTGTCTAAAAACCT...CCAACTTTCAGAAGCTCTGATCTCTGTCCTAGGTGTTTGACAAATAAATACATA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CAA 90 bp TATGTATTTATTTGTCAAACACCTAGGACAGAGATCAGAGCTTCTGAAAGTTGGTCTTGGGAGGAGGAATaGCAAGAGGCTTTTGATTCC +
Preference number: 5 (lower is better)
Translates to: YVFICQTPRTEIRASESWSWEEE*QEAFDS
Trigger: GGAATCAAAAGCCTCTTGCAATTCCTCCTCCCAAGA...CCAACTTTCAGAAGCTCTGATCTCTGTCCTAGGTGTTTGACAAATAAATACATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CAA 90 bp CTATTTACTTATGGCAGGGTTTTGACTTCTCACTTAACATGCAAAGGAGCTACATCCTCTGTGGCTGTGTaGAAGTTCTCTAGAATCACA +
Preference number: 5 (lower is better)
Translates to: LFTYGRVLTSHLTCKGATSSVAV*KFSRIT
Trigger: TGTGATTCTAGAGAACTTCAACACAGCCACAGAGGA...TGTAGCTCCTTTGCATGTTAAGTGAGAAGTCAAAACCCTGCCATAAGTAAATAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS TCA 90 bp CATACAGTTGATGATCACTGTGCAGATAATGAACATGCTGAAGACTaGATGGACAGAGATGCGAATCATGAAGCTTCTGATGGGATTAAA +
Preference number: 5 (lower is better)
Translates to: HTVDDHCADNEHAED*MDRDANHEASDGIK
Trigger: TTTAATCCCATCAGAAGCTTCATGATTCGCATCTCTGTCCATTCAGTCTTCAGCATGTTCATTATCTGCACAGTGATCATCAACTGTATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CAA 90 bp TATGTATTTATTTGTCAAACACCTAGGACAGAGATCAGAGCTTCTGAAAGTTGGTTTCTTCTTCTCCTTTaGGATGGTGATCCGCTTCTC +
Preference number: 5 (lower is better)
Translates to: YVFICQTPRTEIRASESWFLLLL*DGDPLL
Trigger: GAGAAGCGGATCACCATCCAAAAGGAGAAGAAGAAA...CCAACTTTCAGAAGCTCTGATCTCTGTCCTAGGTGTTTGACAAATAAATACATA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CAA 90 bp TATGTATTTATTTGTCAAACACCTAGGACAGAGATCAGAGCTTCTGAAAGTTGGATTTTCTTCACTTCGTaGGGCTGGCCTTCAGATTCA +
Preference number: 5 (lower is better)
Translates to: YVFICQTPRTEIRASESWIFFTS*GWPSDS
Trigger: TGAATCTGAAGGCCAGCCCAACGAAGTGAAGAAAAT...CCAACTTTCAGAAGCTCTGATCTCTGTCCTAGGTGTTTGACAAATAAATACATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CAA 90 bp TTTGACTTCTCACTTAACATGCAAAGGAGCTACATGTGGCAGGTCACATACTTAGAAAGATTATTGACTTaGTTACCGAGAAAACAAGGC +
Preference number: 5 (lower is better)
Translates to: FDFSLNMQRSYMWQVTYLERLLT*LPRKQG
Trigger: GCCTTGTTTTCTCGGTAACAAAGTCAATAATCTTTC...TAAGTATGTGACCTGCCACATGTAGCTCCTTTGCATGTTAAGTGAGAAGTCAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS-3UTR CAA 90 bp GGTAGAAACACCTGCAACAAAGCTATTTACTTATGGCAGGGTTTTGACTTCTCAGAAAGATTATTGACTTaGTTACCGAGAAAACAAGGC +
Preference number: 5 (lower is better)
Translates to: GRNTCNKAIYLWQGFDFSERLLT*LPRKQG
Trigger: GCCTTGTTTTCTCGGTAACAAAGTCAATAATCTTTC...TGAGAAGTCAAAACCCTGCCATAAGTAAATAGCTTTGTTGCAGGTGTTTCTACC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS CCA 90 bp AAGACTATGTTGAGAATATCAAAGATTTTCTTCACTTCGTTGGGCTaGCCTTCAGATTCAGCCATCATGATAATCATGTTTGTGACAATA +
Preference number: 5 (lower is better)
Translates to: KTMLRISKIFFTSLG*PSDSAIMIIMFVTI
Trigger: TATTGTCACAAACATGATTATCATGATGGCTGAATCTGAAGGCCAGCCCAACGAAGTGAAGAAAATCTTTGATATTCTCAACATAGTCTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS TCA 72 bp CGGCTCGGGCAGGGCGTCGGCGAAGTCAGAGAGGGATaGGTACTGGATGAACTGTGTTGCTTCGGGGTCAAA +
Preference number: 6 (lower is better)
Translates to: RLGQGVGEVREG*VLDELCCFGVK
Trigger: TTTGACCCCGAAGCAACACAGTTCATCCAGTACTCATCCCTCTCTGACTTCGCCGACGCCCTGCCCGAGCCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS CCA 72 bp ACCACAACATTCCATATCGTCCTCTTCTTTTGCCAGTaGGGCCAGTGGAGCCCCGGCCTGCCCAGTGTACAG +
Preference number: 6 (lower is better)
Translates to: TTTFHIVLFFCQ*GQWSPGLPSVQ
Trigger: CTGTACACTGGGCAGGCCGGGGCTCCACTGGCCCCACTGGCAAAAGAAGAGGACGATATGGAATGTTGTGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS CAA 72 bp CACATTCACCACAACATTCCATATCGTCCTCTTCTTTaGCCAGTGGGGCCAGTGGAGCCCCGGCCTGCCCAG +
Preference number: 6 (lower is better)
Translates to: HIHHNIPYRPLL*PVGPVEPRPAQ
Trigger: CTGGGCAGGCCGGGGCTCCACTGGCCCCACTGGCAAAAGAAGAGGACGATATGGAATGTTGTGGTGAATGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS GCA 72 bp GCACTCAGCGCTCTCTGCCTATGGAGGGGGTCCACGTaGTCATCAAAGAGTTCTACGGGCAAGTTCTGGGAT +
Preference number: 6 (lower is better)
Translates to: ALSALCLWRGST*SSKSSTGKFWD
Trigger: ATCCCAGAACTTGCCCGTAGAACTCTTTGATGAGCACGTGGACCCCCTCCATAGGCAGAGAGCGCTGAGTGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS GCA 72 bp CCACGGAGGGCTACATTCCCACACCAGGTACTTGGATaGCAAGTTTTTCCCACACGGGAAACAAGGCTCCTG +
Preference number: 6 (lower is better)
Translates to: PRRATFPHQVLG*QVFPTRETRLL
Trigger: CAGGAGCCTTGTTTCCCGTGTGGGAAAAACTTGGCATCCAAGTACCTGGTGTGGGAATGTAGCCCTCCGTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS TCA 72 bp TGGAGCCCCGGCCTGCCCAGTGTACAGAGTCATTTCTaGATCATACTCCTTCCAGGACCTTGTATCCAGGGT +
Preference number: 6 (lower is better)
Translates to: WSPGLPSVQSHF*IILLPGPCIQG
Trigger: ACCCTGGATACAAGGTCCTGGAAGGAGTATGATTCAGAAATGACTCTGTACACTGGGCAGGCCGGGGCTCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS GCA 72 bp ATGGCCAGCTCAGTGAAGGGGTCTGTCATGATAGTCTaGAGGACCTTCTTTATGCACAGCCACGGAGGGCTA +
Preference number: 6 (lower is better)
Translates to: MASSVKGSVMIV*RTFFMHSHGGL
Trigger: TAGCCCTCCGTGGCTGTGCATAAAGAAGGTCCTGCAGACTATCATGACAGACCCCTTCACTGAGCTGGCCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS CCA 72 bp GTTAAGATACTGACGGCACTCAGCGCTCTCTGCCTATaGAGGGGGTCCACGTGCTCATCAAAGAGTTCTACG +
Preference number: 6 (lower is better)
Translates to: VKILTALSALCL*RGSTCSSKSST
Trigger: CGTAGAACTCTTTGATGAGCACGTGGACCCCCTCCATAGGCAGAGAGCGCTGAGTGCCGTCAGTATCTTAAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS CAA 72 bp ATTCATAATGTCCAGCCAGCCCTTATAGGTCGCCACTaGCAGCAGGGCAAGGTAGGCATTCCCCACGTTGTC +
Preference number: 6 (lower is better)
Translates to: IHNVQPALIGRH*QQGKVGIPHVV
Trigger: GACAACGTGGGGAATGCCTACCTTGCCCTGCTGCAAGTGGCGACCTATAAGGGCTGGCTGGACATTATGAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS CAA 90 bp CCCGGAGGTGCGAAGGATCTGTCGATAAAGCTTCTCCCAGGAGTCTaGAGTCATAACCCGGAACATGGCGAGAAAAGACCAGCCAAAGCT +
Preference number: 6 (lower is better)
Translates to: PGGAKDLSIKLLPGV*SHNPEHGEKRPAKA
Trigger: AGCTTTGGCTGGTCTTTTCTCGCCATGTTCCGGGTTATGACTCAAGACTCCTGGGAGAAGCTTTATCGACAGATCCTTCGCACCTCCGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS TCA 72 bp TGGCACCAAAGAGCCGCATGCCAACCACGGAAAAGATaGAGACCACGATCGTTAGGACCACAGTCAGGTTTC +
Preference number: 6 (lower is better)
Translates to: WHQRAACQPRKR*RPRSLGPQSGF
Trigger: GAAACCTGACTGTGGTCCTAACGATCGTGGTCTTCATCTTTTCCGTGGTTGGCATGCGGCTCTTTGGTGCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS CAA 90 bp CTCAGCACTCTGAGGGAAGCCAAGAAGGAGAGGTTTTTAGACAGTTaGTGGAAGAGCACGTCAGCGAGACTCACAAGGGCCACAATGCTG +
Preference number: 6 (lower is better)
Translates to: LSTLREAKKERFLDS*WKSTSARLTRATML
Trigger: CAGCATTGTGGCCCTTGTGAGTCTCGCTGACGTGCTCTTCCACAAACTGTCTAAAAACCTCTCCTTCTTGGCTTCCCTCAGAGTGCTGAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS CAA 90 bp TATCCAGGGTGGCTGTGTCTCTACTCTCACCAGCAAAGCTTTCTGTaGCCTCATTTGGCTTTGGCGAGTTTTGCCTCCTGCATCTCTTGC +
Preference number: 6 (lower is better)
Translates to: YPGWLCLYSHQQSFL*PHLALASFASCISC
Trigger: GCAAGAGATGCAGGAGGCAAAACTCGCCAAAGCCAAATGAGGCAACAGAAAGCTTTGCTGGTGAGAGTAGAGACACAGCCACCCTGGATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS CAA 90 bp ATCCGAGCCAAGCGGACAATCCTGAAGAGTGTGGGCGGGAAGACGTaGCTGTTCTCCAAGCCAGAAACCAAGGTACTAATGATGGAAAGA +
Preference number: 6 (lower is better)
Translates to: IRAKRTILKSVGGKT*LFSKPETKVLMMER
Trigger: TCTTTCCATCATTAGTACCTTGGTTTCTGGCTTGGAGAACAGCAACGTCTTCCCGCCCACACTCTTCAGGATTGTCCGCTTGGCTCGGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS GCA 72 bp CTGTTGCCTCATTTGGCTTTGGCGAGTTTTGCCTCCTaGATCTCTTGCAACAGAAATTCTGAAGAGCGCGCG +
Preference number: 6 (lower is better)
Translates to: LLPHLALASFAS*ISCNRNSEERA
Trigger: CGCGCGCTCTTCAGAATTTCTGTTGCAAGAGATGCAGGAGGCAAAACTCGCCAAAGCCAAATGAGGCAACAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS GCA 72 bp GGCTGTGTCTCTACTCTCACCAGCAAAGCTTTCTGTTaGCTCATTTGGCTTTGGCGAGTTTTGCCTCCTGCA +
Preference number: 6 (lower is better)
Translates to: GCVSTLTSKAFC*LIWLWRVLPPA
Trigger: TGCAGGAGGCAAAACTCGCCAAAGCCAAATGAGGCAACAGAAAGCTTTGCTGGTGAGAGTAGAGACACAGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS CCA 72 bp TCAACAGCTGCTGGGCTTCCTGAAACATCTTCTCCTTaGCCTCTGTCTCGGCAGCGACATTTCTGTTCTGTT +
Preference number: 6 (lower is better)
Translates to: STAAGLPETSSP*PLSRQRHFCSV
Trigger: AACAGAACAGAAATGTCGCTGCCGAGACAGAGGCCAAGGAGAAGATGTTTCAGGAAGCCCAGCAGCTGTTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS CAA 72 bp TCGTCCTCTGAATCGGACGCTGAGGCTCGGGCTGTCTaGGACCCTCTCATAAAGAAGGACTTTCTTGTCTTA +
Preference number: 6 (lower is better)
Translates to: SSSESDAEARAV*DPLIKKDFLVL
Trigger: TAAGACAAGAAAGTCCTTCTTTATGAGAGGGTCCAAGACAGCCCGAGCCTCAGCGTCCGATTCAGAGGACGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS CAA 72 bp TGGCTGTGTCTCTACTCTCACCAGCAAAGCTTTCTGTaGCCTCATTTGGCTTTGGCGAGTTTTGCCTCCTGC +
Preference number: 6 (lower is better)
Translates to: WLCLYSHQQSFL*PHLALASFASC
Trigger: GCAGGAGGCAAAACTCGCCAAAGCCAAATGAGGCAACAGAAAGCTTTGCTGGTGAGAGTAGAGACACAGCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS CAA 72 bp AAGCGGACAATCCTGAAGAGTGTGGGCGGGAAGACGTaGCTGTTCTCCAAGCCAGAAACCAAGGTACTAATG +
Preference number: 6 (lower is better)
Translates to: KRTILKSVGGKT*LFSKPETKVLM
Trigger: CATTAGTACCTTGGTTTCTGGCTTGGAGAACAGCAACGTCTTCCCGCCCACACTCTTCAGGATTGTCCGCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS CAA 90 bp TTAGAGGCATCGTCCTCTGAATCGGACGCTGAGGCTCGGGCTGTCTaGGACCCTCTCATAAAGAAGGACTTTCTTGTCTTACTGCCAAAA +
Preference number: 6 (lower is better)
Translates to: LEASSSESDAEARAV*DPLIKKDFLVLLPK
Trigger: TTTTGGCAGTAAGACAAGAAAGTCCTTCTTTATGAGAGGGTCCAAGACAGCCCGAGCCTCAGCGTCCGATTCAGAGGACGATGCCTCTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS CAA 72 bp GCGAAGGATCTGTCGATAAAGCTTCTCCCAGGAGTCTaGAGTCATAACCCGGAACATGGCGAGAAAAGACCA +
Preference number: 6 (lower is better)
Translates to: AKDLSIKLLPGV*SHNPEHGEKRP
Trigger: TGGTCTTTTCTCGCCATGTTCCGGGTTATGACTCAAGACTCCTGGGAGAAGCTTTATCGACAGATCCTTCGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS CAA 72 bp CTCTACTCTCACCAGCAAAGCTTTCTGTTGCCTCATTaGGCTTTGGCGAGTTTTGCCTCCTGCATCTCTTGC +
Preference number: 6 (lower is better)
Translates to: LYSHQQSFLLPH*ALASFASCISC
Trigger: GCAAGAGATGCAGGAGGCAAAACTCGCCAAAGCCAAATGAGGCAACAGAAAGCTTTGCTGGTGAGAGTAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS CAA 72 bp AAAGACCTGGCTTGTGACCAAATCGAACACGAAGGCTaGACATTTGTTCAGGGGCCTTGGGATGGGCTTTTG +
Preference number: 6 (lower is better)
Translates to: KDLACDQIEHEG*TFVQGPWDGLL
Trigger: CAAAAGCCCATCCCAAGGCCCCTGAACAAATGTCAAGCCTTCGTGTTCGATTTGGTCACAAGCCAGGTCTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS CAA 90 bp GCCCAGTGTACAGAGTCATTTCTGAATCATACTCCTTCCAGGACCTaGTATCCAGGGTGGCTGTGTCTCTACTCTCACCAGCAAAGCTTT +
Preference number: 6 (lower is better)
Translates to: AQCTESFLNHTPSRT*YPGWLCLYSHQQSF
Trigger: AAAGCTTTGCTGGTGAGAGTAGAGACACAGCCACCCTGGATACAAGGTCCTGGAAGGAGTATGATTCAGAAATGACTCTGTACACTGGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS CAA 90 bp TCGGTACACTTCAGTAATTTTTCAACTTGGGGCCGGCTGGGAAGATaGACATCTTCGAATATCAGTGCTCCGCTGCTCAGCAGGATGACA +
Preference number: 6 (lower is better)
Translates to: SVHFSNFSTWGRLGR*TSSNISAPLLSRMT
Trigger: TGTCATCCTGCTGAGCAGCGGAGCACTGATATTCGAAGATGTCAATCTTCCCAGCCGGCCCCAAGTTGAAAAATTACTGAAGTGTACCGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS TCA 72 bp TCAGTAATTTTTCAACTTGGGGCCGGCTGGGAAGATTaGCATCTTCGAATATCAGTGCTCCGCTGCTCAGCA +
Preference number: 6 (lower is better)
Translates to: SVIFQLGAGWED*HLRISVLRCSA
Trigger: TGCTGAGCAGCGGAGCACTGATATTCGAAGATGTCAATCTTCCCAGCCGGCCCCAAGTTGAAAAATTACTGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS CCA 72 bp TCCACGTGCTCATCAAAGAGTTCTACGGGCAAGTTCTaGGATAGTCGTTTTGTTTGCTCAAGGAGTTGTGGG +
Preference number: 6 (lower is better)
Translates to: STCSSKSSTGKF*DSRFVCSRSCG
Trigger: CCCACAACTCCTTGAGCAAACAAAACGACTATCCCAGAACTTGCCCGTAGAACTCTTTGATGAGCACGTGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS CCA 72 bp TCTACTCTCACCAGCAAAGCTTTCTGTTGCCTCATTTaGCTTTGGCGAGTTTTGCCTCCTGCATCTCTTGCA +
Preference number: 6 (lower is better)
Translates to: STLTSKAFCCLI*LWRVLPPASLA
Trigger: TGCAAGAGATGCAGGAGGCAAAACTCGCCAAAGCCAAATGAGGCAACAGAAAGCTTTGCTGGTGAGAGTAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS CCA 72 bp ACATCCAAGCTAGACAAGTCTCCATTGCAAAACACCTaGAGCGATGAACTTGACCTGCCTTTCAGCTTCAGC +
Preference number: 6 (lower is better)
Translates to: TSKLDKSPLQNT*SDELDLPFSFS
Trigger: GCTGAAGCTGAAAGGCAGGTCAAGTTCATCGCTCCAGGTGTTTTGCAATGGAGACTTGTCTAGCTTGGATGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS CAA 72 bp TCTCACCAGCAAAGCTTTCTGTTGCCTCATTTGGCTTaGGCGAGTTTTGCCTCCTGCATCTCTTGCAACAGA +
Preference number: 6 (lower is better)
Translates to: SHQQSFLLPHLA*ASFASCISCNR
Trigger: TCTGTTGCAAGAGATGCAGGAGGCAAAACTCGCCAAAGCCAAATGAGGCAACAGAAAGCTTTGCTGGTGAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS CAA 72 bp CATTCAGGTCTATTGTGCTGCATTCTGAGAGCATGCTaGCCGCATCAGACTTCTTTCGAGCACTCTGTATGG +
Preference number: 6 (lower is better)
Translates to: HSGLLCCILRAC*PHQTSFEHSVW
Trigger: CCATACAGAGTGCTCGAAAGAAGTCTGATGCGGCAAGCATGCTCTCAGAATGCAGCACAATAGACCTGAATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS CAA 72 bp TTCAGTAATTTTTCAACTTGGGGCCGGCTGGGAAGATaGACATCTTCGAATATCAGTGCTCCGCTGCTCAGC +
Preference number: 6 (lower is better)
Translates to: FSNFSTWGRLGR*TSSNISAPLLS
Trigger: GCTGAGCAGCGGAGCACTGATATTCGAAGATGTCAATCTTCCCAGCCGGCCCCAAGTTGAAAAATTACTGAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS CAA 90 bp CTGGGGCTCAGTTGCTGCCTTGTCTTTGGATTTCTTCTTCTCCTTTaGGATGGTGATCCGCTTCTCTATTGCAGCCAAAGAGTCGAAAGT +
Preference number: 6 (lower is better)
Translates to: LGLSCCLVFGFLLLL*DGDPLLYCSQRVES
Trigger: ACTTTCGACTCTTTGGCTGCAATAGAGAAGCGGATCACCATCCAAAAGGAGAAGAAGAAATCCAAAGACAAGGCAGCAACTGAGCCCCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS CAA 90 bp TGGCTGTGTCTCTACTCTCACCAGCAAAGCTTTCTGTTGCCTCATTaGGCTTTGGCGAGTTTTGCCTCCTGCATCTCTTGCAACAGAAAT +
Preference number: 6 (lower is better)
Translates to: WLCLYSHQQSFLLPH*ALASFASCISCNRN
Trigger: ATTTCTGTTGCAAGAGATGCAGGAGGCAAAACTCGCCAAAGCCAAATGAGGCAACAGAAAGCTTTGCTGGTGAGAGTAGAGACACAGCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS GCA 72 bp CTTCTTCTCCTTTTGGATGGTGATCCGCTTCTCTATTaGAGCCAAAGAGTCGAAAGTGAAGGGGCGGAAATT +
Preference number: 6 (lower is better)
Translates to: LLLLLDGDPLLY*SQRVESEGAEI
Trigger: AATTTCCGCCCCTTCACTTTCGACTCTTTGGCTGCAATAGAGAAGCGGATCACCATCCAAAAGGAGAAGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS GCA 72 bp AGTTCTACGGGCAAGTTCTGGGATAGTCGTTTTGTTTaGTCAAGGAGTTGTGGGTTTTTAGAGGCATCGTCC +
Preference number: 6 (lower is better)
Translates to: SSTGKFWDSRFV*SRSCGFLEASS
Trigger: GGACGATGCCTCTAAAAACCCACAACTCCTTGAGCAAACAAAACGACTATCCCAGAACTTGCCCGTAGAACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS CCA 72 bp GATGCCAAGTTTTTCCCACACGGGAAACAAGGCTCCTaGGATTTTTCTTGTTCCTGCATGGTGATGGTTAAG +
Preference number: 6 (lower is better)
Translates to: DAKFFPHGKQGS*DFSCSCMVMVK
Trigger: CTTAACCATCACCATGCAGGAACAAGAAAAATCCCAGGAGCCTTGTTTCCCGTGTGGGAAAAACTTGGCATC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS CAA 90 bp TGTCTCTACTCTCACCAGCAAAGCTTTCTGTTGCCTCATTTGGCTTaGGCGAGTTTTGCCTCCTGCATCTCTTGCAACAGAAATTCTGAA +
Preference number: 6 (lower is better)
Translates to: CLYSHQQSFLLPHLA*ASFASCISCNRNSE
Trigger: TTCAGAATTTCTGTTGCAAGAGATGCAGGAGGCAAAACTCGCCAAAGCCAAATGAGGCAACAGAAAGCTTTGCTGGTGAGAGTAGAGACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS GCA 72 bp TATCATTCAGGTCTATTGTGCTGCATTCTGAGAGCATaGTTGCCGCATCAGACTTCTTTCGAGCACTCTGTA +
Preference number: 6 (lower is better)
Translates to: YHSGLLCCILRA*LPHQTSFEHSV
Trigger: TACAGAGTGCTCGAAAGAAGTCTGATGCGGCAAGCATGCTCTCAGAATGCAGCACAATAGACCTGAATGATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS CAA 72 bp ACTCGGAAGGTACGTAGAGTGGAAAGATTATTGACTTaGTTACCGAGAAAACAAGGCGCTATCGCTGTTCCG +
Preference number: 6 (lower is better)
Translates to: TRKVRRVERLLT*LPRKQGAIAVP
Trigger: CGGAACAGCGATAGCGCCTTGTTTTCTCGGTAACAAAGTCAATAATCTTTCCACTCTACGTACCTTCCGAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS TCA 72 bp TCAACACTCGGAAGGTACGTAGAGTGGAAAGATTATTaGCTTTGTTACCGAGAAAACAAGGCGCTATCGCTG +
Preference number: 6 (lower is better)
Translates to: STLGRYVEWKDY*LCYRENKALSL
Trigger: CAGCGATAGCGCCTTGTTTTCTCGGTAACAAAGTCAATAATCTTTCCACTCTACGTACCTTCCGAGTGTTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS TCA 72 bp GGCAGGATCTTCTGCCGAGCCAGTTGCCACACATTATaGAGTCCTCGCTATCATTTTCTTTTACAAAGCAAT +
Preference number: 6 (lower is better)
Translates to: GRIFCRASCHTL*SPRYHFLLQSN
Trigger: ATTGCTTTGTAAAAGAAAATGATAGCGAGGACTTCATAATGTGTGGCAACTGGCTCGGCAGAAGATCCTGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS CAA 72 bp CTCAACACTCGGAAGGTACGTAGAGTGGAAAGATTATaGACTTTGTTACCGAGAAAACAAGGCGCTATCGCT +
Preference number: 6 (lower is better)
Translates to: LNTRKVRRVERL*TLLPRKQGAIA
Trigger: AGCGATAGCGCCTTGTTTTCTCGGTAACAAAGTCAATAATCTTTCCACTCTACGTACCTTCCGAGTGTTGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS CAA 72 bp AAAGCTTTCTGTTGCCTCATTTGGCTTTGGCGAGTTTaGCCTCCTGCATCTCTTGCAACAGAAATTCTGAAG +
Preference number: 6 (lower is better)
Translates to: KAFCCLIWLWRV*PPASLATEILK
Trigger: CTTCAGAATTTCTGTTGCAAGAGATGCAGGAGGCAAAACTCGCCAAAGCCAAATGAGGCAACAGAAAGCTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS CCA 72 bp GTTCAATACCATGAATGTCTTATGGTCTTTGTAAAATaGGTCCAGATCTTCCAGGGGCTTCGCTATAAGGTC +
Preference number: 6 (lower is better)
Translates to: VQYHECLMVFVK*VQIFQGLRYKV
Trigger: GACCTTATAGCGAAGCCCCTGGAAGATCTGGACCCATTTTACAAAGACCATAAGACATTCATGGTATTGAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS CAA 90 bp CTAGGACGACTGTCCACAGAAGAATTATTAGCCATGAACATACAGTaGATGATCACTGTGCAGATAATGAACATGCTGAAGACTGAATGG +
Preference number: 6 (lower is better)
Translates to: LGRLSTEELLAMNIQ*MITVQIMNMLKTEW
Trigger: CCATTCAGTCTTCAGCATGTTCATTATCTGCACAGTGATCATCAACTGTATGTTCATGGCTAATAATTCTTCTGTGGACAGTCGTCCTAG
41% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2
CDS CCA 72 bp AAAATATTATCGGTACACTTCAGTAATTTTTCAACTTaGGGCCGGCTGGGAAGATTGACATCTTCGAATATC +
Preference number: 6 (lower is better)
Translates to: KILSVHFSNFST*GRLGRLTSSNI
Trigger: GATATTCGAAGATGTCAATCTTCCCAGCCGGCCCCAAGTTGAAAAATTACTGAAGTGTACCGATAATATTTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000070617.8
ENSMUST00000215718.2