RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SCN10A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000034533

Ensembl transcript IDs: ENSMUST00000084787.6, ENSMUST00000213392.2, ENSMUST00000214408.2

Found 383 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ATATCCCTATTCAGCTCTGACACCATGACCAGTGACATGCATCGGTaGGGCTGTAGGTTGGTGCCATCTCTGGAGGGAAAGGGTCAGCAC +
Preference number: 1 (lower is better)
Translates to: ISLFSSDTMTSDMHR*GCRLVPSLEGKGQH
Trigger: GTGCTGACCCTTTCCCTCCAGAGATGGCACCAACCTACAGCCTCACCGATGCATGTCACTGGTCATGGTGTCAGAGCTGAATAGGGATAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
3UTR TCA 90 bp AAATCACATCTCTGGTCACAAACAACACAAAGCGATGTCATCTTCTaGAAGTTCAGAAGAGATGTCAAAGTGGGGGAGTATTCTTGGCTT +
Preference number: 1 (lower is better)
Translates to: KSHLWSQTTQSDVIF*KFRRDVKVGEYSWL
Trigger: AAGCCAAGAATACTCCCCCACTTTGACATCTCTTCTGAACTTTCAGAAGATGACATCGCTTTGTGTTGTTTGTGACCAGAGATGTGATTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
3UTR-3UTR GCA 90 bp GATTGCCTGAGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTGAGGCTGTAGGTTGGTaGCATCTCTGGAGGGAAAGG +
Preference number: 2 (lower is better)
Translates to: DCLRPPEMSLPCVSGSSGEAVGW*HLWRER
Trigger: CCTTTCCCTCCAGAGATGGCACCAACCTACAGCCTC...ACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCAATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
3UTR-3UTR TCA 90 bp TGCCTGAGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTTCTAGTATTCTTGGCTTTTaGTTCCTATTGGGGTGGGGG +
Preference number: 2 (lower is better)
Translates to: CLRPPEMSLPCVSGSSGSSILGF*FLLGWG
Trigger: CCCCCACCCCAATAGGAATCAAAAGCCAAGAATACT...AGAACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
3UTR-3UTR CCA 90 bp CAAGATTGCCTGAGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGCTTTTGATTCCTATTaGGGTGGGGGCTTTCTCAAG +
Preference number: 2 (lower is better)
Translates to: QDCLRPPEMSLPCVSGSSAFDSY*GGGFLK
Trigger: CTTGAGAAAGCCCCCACCCCAATAGGAATCAAAAGC...AGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCAATCTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
3UTR-3UTR CCA 90 bp TGCCTGAGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTTCTGTGGGGGAGTATTCTTaGCTTTTGATTCCTATTGGG +
Preference number: 2 (lower is better)
Translates to: CLRPPEMSLPCVSGSSGSVGEYS*LLIPIG
Trigger: CCCAATAGGAATCAAAAGCCAAGAATACTCCCCCAC...AGAACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
3UTR-3UTR CCA 90 bp GATTGCCTGAGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTGAAGAGATGTCAAAGTaGGGGAGTATTCTTGGCTTT +
Preference number: 2 (lower is better)
Translates to: DCLRPPEMSLPCVSGSSGEEMSK*GSILGF
Trigger: AAAGCCAAGAATACTCCCCCACTTTGACATCTCTTC...ACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCAATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
3UTR CAA 90 bp CCTATGCAACTTCTCCAAGATTGCCTGAGACCACCAGAAATGTCCTaGCCATGTGTCTCTGGAAGTTCTGGTTCTGAGAAGTTGGTAAAT +
Preference number: 2 (lower is better)
Translates to: PMQLLQDCLRPPEMS*PCVSGSSGSEKLVN
Trigger: ATTTACCAACTTCTCAGAACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCAATCTTGGAGAAGTTGCATAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
3UTR-3UTR CCA 90 bp GACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTTCTGAGAAGTGAAGAGATGTCAAAGTaGGGGAGTATTCTTGGCTTT +
Preference number: 2 (lower is better)
Translates to: DHQKCPCHVSLEVLVLRSEEMSK*GSILGF
Trigger: AAAGCCAAGAATACTCCCCCACTTTGACATCTCTTC...ACTTCTCAGAACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
3UTR-3UTR GCA 90 bp TTTAAAAATATCAATTTTAATGGCCGACCCTCAGGTATTGTCCGGCAACTGCGACAACTTCTCCAAGATTaGCTGAGACCACCAGAAATG +
Preference number: 2 (lower is better)
Translates to: FKNINFNGRPSGIVRQLRQLLQD*LRPPEM
Trigger: CATTTCTGGTGGTCTCAGGCAATCTTGGAGAAGTTG...TCGCAGTTGCCGGACAATACCTGAGGGTCGGCCATTAAAATTGATATTTTTAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
3UTR-3UTR CCA 90 bp GTCACAAACAACACAAAGCGATGTCATCTTCTGAAAGTTCAGAAGAGATGTCAAGCTTTTGATTCCTATTaGGGTGGGGGCTTTCTCAAG +
Preference number: 2 (lower is better)
Translates to: VTNNTKRCHLLKVQKRCQAFDSY*GGGFLK
Trigger: CTTGAGAAAGCCCCCACCCCAATAGGAATCAAAAGC...TTGACATCTCTTCTGAACTTTCAGAAGATGACATCGCTTTGTGTTGTTTGTGAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
3UTR TCA 72 bp TTCAGCTCTGACACCATGACCAGTGACATGCATCGGTaGGGCTGTAGGTTGGTGCCATCTCTGGAGGGAAAG +
Preference number: 3 (lower is better)
Translates to: FSSDTMTSDMHR*GCRLVPSLEGK
Trigger: CTTTCCCTCCAGAGATGGCACCAACCTACAGCCTCACCGATGCATGTCACTGGTCATGGTGTCAGAGCTGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
3UTR GCA 72 bp CAGTCATGCAAACCCTCATTAGCAGTGCCACCCCTATaGGACAGTGCCACCCCTATGCAACTTCTCCAAGAT +
Preference number: 3 (lower is better)
Translates to: QSCKPSLAVPPL*DSATPMQLLQD
Trigger: ATCTTGGAGAAGTTGCATAGGGGTGGCACTGTCGCATAGGGGTGGCACTGCTAATGAGGGTTTGCATGACTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
3UTR CCA 72 bp ACATGCATCGGTGAGGCTGTAGGTTGGTGCCATCTCTaGAGGGAAAGGGTCAGCACAGCAGAGAAAGACATT +
Preference number: 3 (lower is better)
Translates to: TCIGEAVGWCHL*RERVSTAEKDI
Trigger: AATGTCTTTCTCTGCTGTGCTGACCCTTTCCCTCCAGAGATGGCACCAACCTACAGCCTCACCGATGCATGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
3UTR TCA 72 bp ACAGTGCCACCCCTATGCAACTTCTCCAAGATTGCCTaGGACCACCAGAAATGTCCTTGCCATGTGTCTCTG +
Preference number: 3 (lower is better)
Translates to: TVPPLCNFSKIA*DHQKCPCHVSL
Trigger: CAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCAATCTTGGAGAAGTTGCATAGGGGTGGCACTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
3UTR TCA 72 bp CTTTCTCAAGGATATCCCTATTCAGCTCTGACACCATaGCCAGTGACATGCATCGGTGAGGCTGTAGGTTGG +
Preference number: 3 (lower is better)
Translates to: LSQGYPYSALTP*PVTCIGEAVGW
Trigger: CCAACCTACAGCCTCACCGATGCATGTCACTGGTCATGGTGTCAGAGCTGAATAGGGATATCCTTGAGAAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
3UTR GCA 72 bp ATTTTAATGGCCGACCCTCAGGTATTGTCCGGCAACTaGGAGCATGCAGTCATGCAAACCCTCATTAGCAGT +
Preference number: 3 (lower is better)
Translates to: ILMADPQVLSGN*EHAVMQTLISS
Trigger: ACTGCTAATGAGGGTTTGCATGACTGCATGCTCGCAGTTGCCGGACAATACCTGAGGGTCGGCCATTAAAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
3UTR-3UTR CAA 90 bp TTTAAAAATATCAATTTTAATGGCCGACCCTCAGGTATTGTCCGGCAACTGCGAGAGTATTCTTGGCTTTaGATTCCTATTGGGGTGGGG +
Preference number: 3 (lower is better)
Translates to: FKNINFNGRPSGIVRQLREYSWL*IPIGVG
Trigger: CCCCACCCCAATAGGAATCAAAAGCCAAGAATACTC...TCGCAGTTGCCGGACAATACCTGAGGGTCGGCCATTAAAATTGATATTTTTAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
3UTR TCA 72 bp AATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTTCTaGGAAGTTGGTAAATCACATCTCTGGTCACAAACA +
Preference number: 3 (lower is better)
Translates to: NVLAMCLWKFWF*EVGKSHLWSQT
Trigger: TGTTTGTGACCAGAGATGTGATTTACCAACTTCTCAGAACCAGAACTTCCAGAGACACATGGCAAGGACATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp CCAGTGACATGCATCGGTGAGGCTGTAGGTTGGTGCCATCTCTGGAGGGAAAGGGGACATCCCGGAGGGTaGGCTTCGGGCTGCCTGGTG +
Preference number: 4 (lower is better)
Translates to: PVTCIGEAVGWCHLWRERGHPGG*ASGCLV
Trigger: CACCAGGCAGCCCGAAGCCCACCCTCCGGGATGTCC...CCTTTCCCTCCAGAGATGGCACCAACCTACAGCCTCACCGATGCATGTCACTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp ACATGCATCGGTGAGGCTGTAGGTTGGTGCCATCTCTGGAGGGAAAGGGTCAGCGGGGGACTGAGGCAGTaGACTCCTGGGGAGAGGACC +
Preference number: 4 (lower is better)
Translates to: TCIGEAVGWCHLWRERVSGGLRQ*TPGERT
Trigger: GGTCCTCTCCCCAGGAGTCCACTGCCTCAGTCCCCC...GCTGACCCTTTCCCTCCAGAGATGGCACCAACCTACAGCCTCACCGATGCATGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR GCA 90 bp ACATGCATCGGTGAGGCTGTAGGTTGGTGCCATCTCTGGAGGGAAAGGGTCAGCCAGGTTTTGCGCACCTaGCAGCCCGTGGCCCAAGGA +
Preference number: 4 (lower is better)
Translates to: TCIGEAVGWCHLWRERVSQVLRT*QPVAQG
Trigger: TCCTTGGGCCACGGGCTGGCAGGTGCGCAAAACCTG...GCTGACCCTTTCCCTCCAGAGATGGCACCAACCTACAGCCTCACCGATGCATGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp GCCATCTCTGGAGGGAAAGGGTCAGCACAGCAGAGAAAGACATTAGAACCCGCCGAGGCAGTGGACTCCTaGGGAGAGGACCTGCCTGCC +
Preference number: 4 (lower is better)
Translates to: AISGGKGSAQQRKTLEPAEAVDS*GEDLPA
Trigger: GGCAGGCAGGTCCTCTCCCCAGGAGTCCACTGCCTC...GGCGGGTTCTAATGTCTTTCTCTGCTGTGCTGACCCTTTCCCTCCAGAGATGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR TCA 90 bp ACATGCATCGGTGAGGCTGTAGGTTGGTGCCATCTCTGGAGGGAAAGGGTCAGCCGAGGAGGACGTTCATaGTGGAGGGAATGGCGCCCA +
Preference number: 4 (lower is better)
Translates to: TCIGEAVGWCHLWRERVSRGGRS*WREWRP
Trigger: TGGGCGCCATTCCCTCCATCATGAACGTCCTCCTCG...GCTGACCCTTTCCCTCCAGAGATGGCACCAACCTACAGCCTCACCGATGCATGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR TCA 90 bp ACATGCATCGGTGAGGCTGTAGGTTGGTGCCATCTCTGGAGGGAAAGGGTCAGCTCAGGGCTCCCACGATaGCCTTCAGTCCTGGGATCA +
Preference number: 4 (lower is better)
Translates to: TCIGEAVGWCHLWRERVSSGLPR*PSVLGS
Trigger: TGATCCCAGGACTGAAGGTCATCGTGGGAGCCCTGA...GCTGACCCTTTCCCTCCAGAGATGGCACCAACCTACAGCCTCACCGATGCATGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR TCA 90 bp TGCCTGAGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTTCTCCAGGGTTGGGGGACTaGGGCAGTGGACTCCTGGGG +
Preference number: 4 (lower is better)
Translates to: CLRPPEMSLPCVSGSSGSPGLGD*GSGLLG
Trigger: CCCCAGGAGTCCACTGCCTCAGTCCCCCAACCCTGG...AGAACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR TCA 90 bp GGCTGTAGGTTGGTGCCATCTCTGGAGGGAAAGGGTCAGCACAGCAGAGAAAGAGGGCAGAAAAGGCAATaGACTGGGTGGCCTCCGGGT +
Preference number: 4 (lower is better)
Translates to: GCRLVPSLEGKGQHSRERGQKRQ*TGWPPG
Trigger: ACCCGGAGGCCACCCAGTTCATTGCCTTTTCTGCCC...TCTTTCTCTGCTGTGCTGACCCTTTCCCTCCAGAGATGGCACCAACCTACAGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR GCA 90 bp CCAGTGACATGCATCGGTGAGGCTGTAGGTTGGTGCCATCTCTGGAGGGAAAGGGAAGCAAGCGGAAGGTaGGGAGCACAGACAAGCTGC +
Preference number: 4 (lower is better)
Translates to: PVTCIGEAVGWCHLWREREASGR*GAQTSC
Trigger: GCAGCTTGTCTGTGCTCCGCACCTTCCGCTTGCTTC...CCTTTCCCTCCAGAGATGGCACCAACCTACAGCCTCACCGATGCATGTCACTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR GCA 90 bp GGCTGTAGGTTGGTGCCATCTCTGGAGGGAAAGGGTCAGCACAGCAGAGAAAGACGGGCCAGTGCTACCTaGAAGTTGTTCACCTCCCCG +
Preference number: 4 (lower is better)
Translates to: GCRLVPSLEGKGQHSRERRASAT*KLFTSP
Trigger: CGGGGAGGTGAACAACTTGCAGGTAGCACTGGCCCG...TCTTTCTCTGCTGTGCTGACCCTTTCCCTCCAGAGATGGCACCAACCTACAGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR GCA 90 bp GGCTGTAGGTTGGTGCCATCTCTGGAGGGAAAGGGTCAGCACAGCAGAGAAAGATGCAGCAGCTCCTGCTaGCCTTTGGGGCTCTCTTCC +
Preference number: 4 (lower is better)
Translates to: GCRLVPSLEGKGQHSRERCSSSC*PLGLSS
Trigger: GGAAGAGAGCCCCAAAGGGCAGCAGGAGCTGCTGCA...TCTTTCTCTGCTGTGCTGACCCTTTCCCTCCAGAGATGGCACCAACCTACAGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084787.6
CDS-3UTR GCA 90 bp TGCCATCTCTGGAGGGAAAGGGTCAGCACAGCAGAGAAAGACATTAGAACCCGCGGCAGTCCACCGTGCTaGCCTCGGAGGAGCTTGTGT +
Preference number: 4 (lower is better)
Translates to: CHLWRERVSTAEKDIRTRGSPPC*PRRSLC
Trigger: ACACAAGCTCCTCCGAGGGCAGCACGGTGGACTGCC...GCGGGTTCTAATGTCTTTCTCTGCTGTGCTGACCCTTTCCCTCCAGAGATGGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR GCA 90 bp TGCCTGAGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTTCTCCGGGCAGTCCACCGTaGTGCCCTCGGAGGAGCTTG +
Preference number: 4 (lower is better)
Translates to: CLRPPEMSLPCVSGSSGSPGSPP*CPRRSL
Trigger: CAAGCTCCTCCGAGGGCAGCACGGTGGACTGCCCGG...AGAACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR GCA 90 bp GCCATCTCTGGAGGGAAAGGGTCAGCACAGCAGAGAAAGACATTAGAACCCGCCTGCTGCAGCAGCTCCTaGCCTTTGGGGCTCTCTTCC +
Preference number: 4 (lower is better)
Translates to: AISGGKGSAQQRKTLEPACCSSS*PLGLSS
Trigger: GGAAGAGAGCCCCAAAGGGCAGGAGCTGCTGCAGCA...GGCGGGTTCTAATGTCTTTCTCTGCTGTGCTGACCCTTTCCCTCCAGAGATGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp CCAGTGACATGCATCGGTGAGGCTGTAGGTTGGTGCCATCTCTGGAGGGAAAGGGCTCGCCATAGAACCTaGGCAGCTGGTTACAGGCCT +
Preference number: 4 (lower is better)
Translates to: PVTCIGEAVGWCHLWRERARHRT*AAGYRP
Trigger: AGGCCTGTAACCAGCTGCCCAGGTTCTATGGCGAGC...CCTTTCCCTCCAGAGATGGCACCAACCTACAGCCTCACCGATGCATGTCACTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp GCCATCTCTGGAGGGAAAGGGTCAGCACAGCAGAGAAAGACATTAGAACCCGCCTGGCAAGCTCACCAGTaGGCACTCCACGCTGTCCCT +
Preference number: 4 (lower is better)
Translates to: AISGGKGSAQQRKTLEPAWQAHQ*ALHAVP
Trigger: AGGGACAGCGTGGAGTGCCCACTGGTGAGCTTGCCA...GGCGGGTTCTAATGTCTTTCTCTGCTGTGCTGACCCTTTCCCTCCAGAGATGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp ACATGCATCGGTGAGGCTGTAGGTTGGTGCCATCTCTGGAGGGAAAGGGTCAGCACTCCCCCTCAGCAATaGGCACAGAGACCCACACGT +
Preference number: 4 (lower is better)
Translates to: TCIGEAVGWCHLWRERVSTPPQQ*AQRPTR
Trigger: ACGTGTGGGTCTCTGTGCCCATTGCTGAGGGGGAGT...GCTGACCCTTTCCCTCCAGAGATGGCACCAACCTACAGCCTCACCGATGCATGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp GATTGCCTGAGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTGGACATCCCGGAGGGTaGGCTTCGGGCTGCCTGGTG +
Preference number: 4 (lower is better)
Translates to: DCLRPPEMSLPCVSGSSGGHPGG*ASGCLV
Trigger: CACCAGGCAGCCCGAAGCCCACCCTCCGGGATGTCC...ACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCAATC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp CCAGTGACATGCATCGGTGAGGCTGTAGGTTGGTGCCATCTCTGGAGGGAAAGGGCGAGTGCAGCCTTCTaGGAAACAGTCATCGGGCTC +
Preference number: 4 (lower is better)
Translates to: PVTCIGEAVGWCHLWRERASAAF*ETVIGL
Trigger: GAGCCCGATGACTGTTTCCCAGAAGGCTGCACTCGC...CCTTTCCCTCCAGAGATGGCACCAACCTACAGCCTCACCGATGCATGTCACTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR TCA 90 bp CCAGTGACATGCATCGGTGAGGCTGTAGGTTGGTGCCATCTCTGGAGGGAAAGGGAGCCCAAGTGGCACTaGATCTGGAAATGGTCCTGC +
Preference number: 4 (lower is better)
Translates to: PVTCIGEAVGWCHLWREREPKWH*IWKWSC
Trigger: GCAGGACCATTTCCAGATTCAGTGCCACTTGGGCTC...CCTTTCCCTCCAGAGATGGCACCAACCTACAGCCTCACCGATGCATGTCACTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR TCA 90 bp CCAGTGACATGCATCGGTGAGGCTGTAGGTTGGTGCCATCTCTGGAGGGAAAGGGATCCCATCAGGAAATaGGACGTCTTGGCTGGGTGC +
Preference number: 4 (lower is better)
Translates to: PVTCIGEAVGWCHLWRERDPIRK*DVLAGC
Trigger: GCACCCAGCCAAGACGTCTCATTTCCTGATGGGATC...CCTTTCCCTCCAGAGATGGCACCAACCTACAGCCTCACCGATGCATGTCACTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR TCA 90 bp AGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTTCTGAGAAGCCAGGGTTGGGGGACTaGGGCAGTGGACTCCTGGGG +
Preference number: 4 (lower is better)
Translates to: RPPEMSLPCVSGSSGSEKPGLGD*GSGLLG
Trigger: CCCCAGGAGTCCACTGCCTCAGTCCCCCAACCCTGG...CTTCTCAGAACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR TCA 90 bp GCCATCTCTGGAGGGAAAGGGTCAGCACAGCAGAGAAAGACATTAGAACCCGCCAGGACTTGGCCAGCTTaGAGACCCGAAGCAAGCGGA +
Preference number: 4 (lower is better)
Translates to: AISGGKGSAQQRKTLEPARTWPA*RPEASG
Trigger: TCCGCTTGCTTCGGGTCTTCAAGCTGGCCAAGTCCT...GGCGGGTTCTAATGTCTTTCTCTGCTGTGCTGACCCTTTCCCTCCAGAGATGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR TCA 90 bp CCAGTGACATGCATCGGTGAGGCTGTAGGTTGGTGCCATCTCTGGAGGGAAAGGCCACGAAGAACTGGTTaGTTCTGCCCAGGACCTTCG +
Preference number: 4 (lower is better)
Translates to: PVTCIGEAVGWCHLWRERPRRTG*FCPGPS
Trigger: CGAAGGTCCTGGGCAGAATCAACCAGTTCTTCGTGG...CCTTTCCCTCCAGAGATGGCACCAACCTACAGCCTCACCGATGCATGTCACTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR TCA 90 bp TGCCTGAGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTTCTGCCTTCCCTGGGGAGTaGCACGCCATCCTCCTCAGC +
Preference number: 4 (lower is better)
Translates to: CLRPPEMSLPCVSGSSGSAFPGE*HAILLS
Trigger: GCTGAGGAGGATGGCGTGTCACTCCCCAGGGAAGGC...AGAACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR TCA 90 bp GATTGCCTGAGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTGCCTTCCCTGGGGAGTaGCACGCCATCCTCCTCAGC +
Preference number: 4 (lower is better)
Translates to: DCLRPPEMSLPCVSGSSGAFPGE*HAILLS
Trigger: GCTGAGGAGGATGGCGTGTCACTCCCCAGGGAAGGC...ACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCAATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR GCA 90 bp TGCCATCTCTGGAGGGAAAGGGTCAGCACAGCAGAGAAAGACATTAGAACCCGCGCGAGGTTGTGTCAATaGCCAGCGCTGCCAGCACCT +
Preference number: 4 (lower is better)
Translates to: CHLWRERVSTAEKDIRTRARLCQ*PALPAP
Trigger: AGGTGCTGGCAGCGCTGGGCATTGACACAACCTCGC...GCGGGTTCTAATGTCTTTCTCTGCTGTGCTGACCCTTTCCCTCCAGAGATGGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR GCA 90 bp TGCCATCTCTGGAGGGAAAGGGTCAGCACAGCAGAGAAAGACATTAGAACCCGCTGCGGTAACAGGTTTTaGGCACCTGCCAGCCCGTGG +
Preference number: 4 (lower is better)
Translates to: CHLWRERVSTAEKDIRTRCGNRF*APASPW
Trigger: CCACGGGCTGGCAGGTGCGCAAAACCTGTTACCGCA...GCGGGTTCTAATGTCTTTCTCTGCTGTGCTGACCCTTTCCCTCCAGAGATGGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR GCA 90 bp TGCCATCTCTGGAGGGAAAGGGTCAGCACAGCAGAGAAAGACATTAGAACCCGCTCCCCTTGGAGCCATTaGTGTTGGGCCGGTTGGGGT +
Preference number: 4 (lower is better)
Translates to: CHLWRERVSTAEKDIRTRSPWSH*CWAGWG
Trigger: ACCCCAACCGGCCCAACAGCAATGGCTCCAAGGGGA...GCGGGTTCTAATGTCTTTCTCTGCTGTGCTGACCCTTTCCCTCCAGAGATGGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp CCAGTGACATGCATCGGTGAGGCTGTAGGTTGGTGCCATCTCTGGAGGGAAAGGTGGAACACACTGCTGTaGCTAGCCCTGCGTCTTCCA +
Preference number: 4 (lower is better)
Translates to: PVTCIGEAVGWCHLWRERWNTLL*LALRLP
Trigger: TGGAAGACGCAGGGCTAGCCACAGCAGTGTGTTCCA...CCTTTCCCTCCAGAGATGGCACCAACCTACAGCCTCACCGATGCATGTCACTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp ATTGGGGTGGGGGCTTTCTCAAGGATATCCCTATTCAGCTCTGACACCATGACCCATCCTCCTCAGCCCTaGGCACATGCAGGGGGTTGG +
Preference number: 4 (lower is better)
Translates to: IGVGAFSRISLFSSDTMTHPPQP*AHAGGW
Trigger: CCAACCCCCTGCATGTGCCCAGGGCTGAGGAGGATG...GGTCATGGTGTCAGAGCTGAATAGGGATATCCTTGAGAAAGCCCCCACCCCAAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR TCA 90 bp GCCATCTCTGGAGGGAAAGGGTCAGCACAGCAGAGAAAGACATTAGAACCCGCCACTTCTGGGCTAAGCTaGTCAAGCAGGGTGGGCACT +
Preference number: 4 (lower is better)
Translates to: AISGGKGSAQQRKTLEPATSGLS*SSRVGT
Trigger: AGTGCCCACCCTGCTTGATCAGCTTAGCCCAGAAGT...GGCGGGTTCTAATGTCTTTCTCTGCTGTGCTGACCCTTTCCCTCCAGAGATGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR GCA 90 bp ATTGGGGTGGGGGCTTTCTCAAGGATATCCCTATTCAGCTCTGACACCATGACCTGCTGCAGCAGCTCCTaGTGCCCTTTGGGGCTCTCT +
Preference number: 4 (lower is better)
Translates to: IGVGAFSRISLFSSDTMTCCSSS*CPLGLS
Trigger: AGAGAGCCCCAAAGGGCAGCAGGAGCTGCTGCAGCA...GGTCATGGTGTCAGAGCTGAATAGGGATATCCTTGAGAAAGCCCCCACCCCAAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000084787.6
CDS-3UTR GCA 90 bp ATTGGGGTGGGGGCTTTCTCAAGGATATCCCTATTCAGCTCTGACACCATGACCTGCGGTAACAGGTTTTaGGCACCTGCCAGCCCGTGG +
Preference number: 4 (lower is better)
Translates to: IGVGAFSRISLFSSDTMTCGNRF*APASPW
Trigger: CCACGGGCTGGCAGGTGCGCAAAACCTGTTACCGCA...GGTCATGGTGTCAGAGCTGAATAGGGATATCCTTGAGAAAGCCCCCACCCCAAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp GACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTTCTGAGAAGTGGGGGACTGAGGCAGTaGACTCCTGGGGAGAGGACC +
Preference number: 4 (lower is better)
Translates to: DHQKCPCHVSLEVLVLRSGGLRQ*TPGERT
Trigger: GGTCCTCTCCCCAGGAGTCCACTGCCTCAGTCCCCC...ACTTCTCAGAACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp TGCCTGAGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTTCTCTCCCCGTCATCCTCTaGGGCTGTGAGGTTGTCCGC +
Preference number: 4 (lower is better)
Translates to: CLRPPEMSLPCVSGSSGSLPVIL*GCEVVR
Trigger: GCGGACAACCTCACAGCCCCAGAGGATGACGGGGAG...AGAACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR GCA 90 bp GGCTGTAGGTTGGTGCCATCTCTGGAGGGAAAGGGTCAGCACAGCAGAGAAAGACTAGGAAAGACATCCTaGGCTGGTTGTAAGGGTCGG +
Preference number: 4 (lower is better)
Translates to: GCRLVPSLEGKGQHSRERLGKTS*AGCKGR
Trigger: CCGACCCTTACAACCAGCGCAGGATGTCTTTCCTAG...TCTTTCTCTGCTGTGCTGACCCTTTCCCTCCAGAGATGGCACCAACCTACAGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR GCA 90 bp GCCATCTCTGGAGGGAAAGGGTCAGCACAGCAGAGAAAGACATTAGAACCCGCCTGCCAGGTTCCCCACTaGAGCATTGACAGCATCAGT +
Preference number: 4 (lower is better)
Translates to: AISGGKGSAQQRKTLEPACQVPH*SIDSIS
Trigger: ACTGATGCTGTCAATGCTGCAGTGGGGAACCTGGCA...GGCGGGTTCTAATGTCTTTCTCTGCTGTGCTGACCCTTTCCCTCCAGAGATGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR GCA 90 bp TGCCTGAGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTTCTGGGCTCTCCTCCCTCTaGCATCTCTCCCCCAGGTAT +
Preference number: 4 (lower is better)
Translates to: CLRPPEMSLPCVSGSSGSGLSSL*HLSPRY
Trigger: ATACCTGGGGGAGAGATGGCAGAGGGAGGAGAGCCC...AGAACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR GCA 90 bp GATTGCCTGAGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTGGGCTCTCCTCCCTCTaGCATCTCTCCCCCAGGTAT +
Preference number: 4 (lower is better)
Translates to: DCLRPPEMSLPCVSGSSGGLSSL*HLSPRY
Trigger: ATACCTGGGGGAGAGATGGCAGAGGGAGGAGAGCCC...ACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCAATC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR GCA 90 bp AGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTTCTGAGAAGGGCAGTCCACCGTGCTaGCCTCGGAGGAGCTTGTGT +
Preference number: 4 (lower is better)
Translates to: RPPEMSLPCVSGSSGSEKGSPPC*PRRSLC
Trigger: ACACAAGCTCCTCCGAGGGCAGCACGGTGGACTGCC...CTTCTCAGAACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR GCA 90 bp GATTGCCTGAGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTTCCCCTTGGAGCCATTaGTGTTGGGCCGGTTGGGGT +
Preference number: 4 (lower is better)
Translates to: DCLRPPEMSLPCVSGSSGSPWSH*CWAGWG
Trigger: ACCCCAACCGGCCCAACAGCAATGGCTCCAAGGGGA...ACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCAATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR GCA 90 bp GATTGCCTGAGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTTCAGCCCTGGGCACATaGAGGGGGTTGGAGAGCATC +
Preference number: 4 (lower is better)
Translates to: DCLRPPEMSLPCVSGSSGSALGT*RGLESI
Trigger: GATGCTCTCCAACCCCCTGCATGTGCCCAGGGCTGA...ACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCAATC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp GATTGCCTGAGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTCTTCAGGCGCTCCAGTaGCAAGCTCACCAGTGGGCA +
Preference number: 4 (lower is better)
Translates to: DCLRPPEMSLPCVSGSSGLQALQ*QAHQWA
Trigger: TGCCCACTGGTGAGCTTGCCACTGGAGCGCCTGAAG...ACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCAATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp CAAGATTGCCTGAGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGGGCCACCAAGAGCTaGCTTTGCCAGGTTCCCCAC +
Preference number: 4 (lower is better)
Translates to: QDCLRPPEMSLPCVSGSSGATKS*LCQVPH
Trigger: GTGGGGAACCTGGCAAAGCCAGCTCTTGGTGGCCCC...AGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCAATCTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp GACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTTCTGAGAAGTCCCCGTGGTTCTCCTTaGGGCCACCAAGAGCTGGCT +
Preference number: 4 (lower is better)
Translates to: DHQKCPCHVSLEVLVLRSPRGSP*GHQELA
Trigger: AGCCAGCTCTTGGTGGCCCCAAGGAGAACCACGGGG...ACTTCTCAGAACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp GCCATCTCTGGAGGGAAAGGGTCAGCACAGCAGAGAAAGACATTAGAACCCGCCGCTTGCACCGGAGGGTaGTTGCTATTGGTTCATAGG +
Preference number: 4 (lower is better)
Translates to: AISGGKGSAQQRKTLEPAACTGG*LLLVHR
Trigger: CCTATGAACCAATAGCAACCACCCTCCGGTGCAAGC...GGCGGGTTCTAATGTCTTTCTCTGCTGTGCTGACCCTTTCCCTCCAGAGATGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR TCA 90 bp CCAGTGACATGCATCGGTGAGGCTGTAGGTTGGTGCCATCTCTGGAGGGAAAGGTCCTGCCATTTCAGATaGGAGATTGTCAGCCTTGTG +
Preference number: 4 (lower is better)
Translates to: PVTCIGEAVGWCHLWRERSCHFR*EIVSLV
Trigger: CACAAGGCTGACAATCTCTCATCTGAAATGGCAGGA...CCTTTCCCTCCAGAGATGGCACCAACCTACAGCCTCACCGATGCATGTCACTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR TCA 90 bp TGCCTGAGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTTCTCAGCTTTGCAGCTGGTaGGTGGGGGTTTCATCCCCA +
Preference number: 4 (lower is better)
Translates to: CLRPPEMSLPCVSGSSGSQLCSW*VGVSSP
Trigger: TGGGGATGAAACCCCCACTCACCAGCTGCAAAGCTG...AGAACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR TCA 90 bp GATTGCCTGAGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTCAGCTTTGCAGCTGGTaGGTGGGGGTTTCATCCCCA +
Preference number: 4 (lower is better)
Translates to: DCLRPPEMSLPCVSGSSGQLCSW*VGVSSP
Trigger: TGGGGATGAAACCCCCACTCACCAGCTGCAAAGCTG...ACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCAATC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR TCA 90 bp ACATGCATCGGTGAGGCTGTAGGTTGGTGCCATCTCTGGAGGGAAAGGGTCAGCTGTGTCTGCAAAGTCTaGGAGGGCAGAAAAGGCAAT +
Preference number: 4 (lower is better)
Translates to: TCIGEAVGWCHLWRERVSCVCKV*EGRKGN
Trigger: ATTGCCTTTTCTGCCCTCTCAGACTTTGCAGACACA...GCTGACCCTTTCCCTCCAGAGATGGCACCAACCTACAGCCTCACCGATGCATGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR TCA 90 bp CCAGTGACATGCATCGGTGAGGCTGTAGGTTGGTGCCATCTCTGGAGGGAAAGGTGTGTCTGCAAAGTCTaGGAGGGCAGAAAAGGCAAT +
Preference number: 4 (lower is better)
Translates to: PVTCIGEAVGWCHLWRERCVCKV*EGRKGN
Trigger: ATTGCCTTTTCTGCCCTCTCAGACTTTGCAGACACA...CCTTTCCCTCCAGAGATGGCACCAACCTACAGCCTCACCGATGCATGTCACTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR GCA 90 bp CCAGTGACATGCATCGGTGAGGCTGTAGGTTGGTGCCATCTCTGGAGGGAAAGGCTTGGCTTCGATTTCTaGAATTGTTGCCTGGCTCTG +
Preference number: 4 (lower is better)
Translates to: PVTCIGEAVGWCHLWRERLGFDF*NCCLAL
Trigger: CAGAGCCAGGCAACAATTGCAGAAATCGAAGCCAAG...CCTTTCCCTCCAGAGATGGCACCAACCTACAGCCTCACCGATGCATGTCACTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR GCA 90 bp GATTGCCTGAGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTGGTGATGGTGAGCTCTaGGAAGGGGTCAGTCACCAG +
Preference number: 4 (lower is better)
Translates to: DCLRPPEMSLPCVSGSSGGDGEL*EGVSHQ
Trigger: CTGGTGACTGACCCCTTCGCAGAGCTCACCATCACC...ACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCAATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp GATTGCCTGAGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTACTCCCCCTCAGCAATaGGCACAGAGACCCACACGT +
Preference number: 4 (lower is better)
Translates to: DCLRPPEMSLPCVSGSSGTPPQQ*AQRPTR
Trigger: ACGTGTGGGTCTCTGTGCCCATTGCTGAGGGGGAGT...ACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCAATC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp GGCTGTAGGTTGGTGCCATCTCTGGAGGGAAAGGGTCAGCACAGCAGAGAAAGAGCTGTCATAGGATGGTaGGAAAGACGTAGCAGAAGC +
Preference number: 4 (lower is better)
Translates to: GCRLVPSLEGKGQHSRERAVIGW*ERRSRS
Trigger: GCTTCTGCTACGTCTTTCCCACCATCCTATGACAGC...TCTTTCTCTGCTGTGCTGACCCTTTCCCTCCAGAGATGGCACCAACCTACAGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR TCA 90 bp CAAGATTGCCTGAGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGCCTTCAAGTCCAACTaGGGCCTGGGCTTCTCACTC +
Preference number: 4 (lower is better)
Translates to: QDCLRPPEMSLPCVSGSSAFKSN*GLGFSL
Trigger: GAGTGAGAAGCCCAGGCCTCAGTTGGACTTGAAGGC...AGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCAATCTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR TCA 90 bp GATTGCCTGAGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTGAATGTCCGCAGGCCTaGGATTCCTCGGAGGTCTAT +
Preference number: 4 (lower is better)
Translates to: DCLRPPEMSLPCVSGSSGECPQA*DSSEVY
Trigger: ATAGACCTCCGAGGAATCTCAGGCCTGCGGACATTC...ACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCAATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR TCA 90 bp TGCCTGAGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTTCTAGGAGTCCTGCGTCATaGGACGGAACAGTGAGAGGA +
Preference number: 4 (lower is better)
Translates to: CLRPPEMSLPCVSGSSGSRSPAS*DGTVRG
Trigger: TCCTCTCACTGTTCCGTCTCATGACGCAGGACTCCT...AGAACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR TCA 90 bp TGCCTGAGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTTCTACTTCTGGGCTAAGCTaGTCAAGCAGGGTGGGCACT +
Preference number: 4 (lower is better)
Translates to: CLRPPEMSLPCVSGSSGSTSGLS*SSRVGT
Trigger: AGTGCCCACCCTGCTTGATCAGCTTAGCCCAGAAGT...AGAACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR TCA 90 bp GATTGCCTGAGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTGGGAGATATTCACGATaGGGAAGTCCAGCCAGCACC +
Preference number: 4 (lower is better)
Translates to: DCLRPPEMSLPCVSGSSGGRYSR*GSPAST
Trigger: GGTGCTGGCTGGACTTCCTCATCGTGAATATCTCCC...ACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCAATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR TCA 90 bp GATTGCCTGAGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTGTCTTCTCCTCGCTCTaGTTGTCGGTCTCCACCATC +
Preference number: 4 (lower is better)
Translates to: DCLRPPEMSLPCVSGSSGVFSSL*LSVSTI
Trigger: GATGGTGGAGACCGACAATCAGAGCGAGGAGAAGAC...ACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCAATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR GCA 90 bp GATTGCCTGAGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTCGTTCCCAGGAGTCCTaGGTCATGAGACGGAACAGT +
Preference number: 4 (lower is better)
Translates to: DCLRPPEMSLPCVSGSSGRSQES*VMRRNS
Trigger: ACTGTTCCGTCTCATGACGCAGGACTCCTGGGAACG...ACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCAATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR GCA 90 bp GGCTGTAGGTTGGTGCCATCTCTGGAGGGAAAGGGTCAGCACAGCAGAGAAAGACTTGGCTTCGATTTCTaGAATTGTTGCCTGGCTCTG +
Preference number: 4 (lower is better)
Translates to: GCRLVPSLEGKGQHSRERLGFDF*NCCLAL
Trigger: CAGAGCCAGGCAACAATTGCAGAAATCGAAGCCAAG...TCTTTCTCTGCTGTGCTGACCCTTTCCCTCCAGAGATGGCACCAACCTACAGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR GCA 90 bp CAAGATTGCCTGAGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGAAGTTCTTCTGTCCTaGAGCATCGAGTGCCGGGCC +
Preference number: 4 (lower is better)
Translates to: QDCLRPPEMSLPCVSGSSEVLLS*SIECRA
Trigger: GGCCCGGCACTCGATGCTGCAGGACAGAAGAACTTC...AGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCAATCTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR GCA 90 bp TGCCATCTCTGGAGGGAAAGGGTCAGCACAGCAGAGAAAGACATTAGAACCCGCACTGACAACACTCATTaGCCTCTGTGCTCGGAAAGG +
Preference number: 4 (lower is better)
Translates to: CHLWRERVSTAEKDIRTRTDNTH*PLCSER
Trigger: CCTTTCCGAGCACAGAGGGCAATGAGTGTTGTCAGT...GCGGGTTCTAATGTCTTTCTCTGCTGTGCTGACCCTTTCCCTCCAGAGATGGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR GCA 90 bp ATTGGGGTGGGGGCTTTCTCAAGGATATCCCTATTCAGCTCTGACACCATGACCAAGAAGTCACACATGTaGCAGCGCAGCCTCTCACCA +
Preference number: 4 (lower is better)
Translates to: IGVGAFSRISLFSSDTMTKKSHM*QRSLSP
Trigger: TGGTGAGAGGCTGCGCTGGCACATGTGTGACTTCTT...GGTCATGGTGTCAGAGCTGAATAGGGATATCCTTGAGAAAGCCCCCACCCCAAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR GCA 90 bp ATTGGGGTGGGGGCTTTCTCAAGGATATCCCTATTCAGCTCTGACACCATGACCTCACACTTTTGGACTTaGTGCAGCAGCTCCTGCTGC +
Preference number: 4 (lower is better)
Translates to: IGVGAFSRISLFSSDTMTSHFWT*CSSSCC
Trigger: GCAGCAGGAGCTGCTGCAGCAAGTCCAAAAGTGTGA...GGTCATGGTGTCAGAGCTGAATAGGGATATCCTTGAGAAAGCCCCCACCCCAAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000084787.6
CDS-3UTR GCA 90 bp GAAGTTGGTAAATCACATCTCTGGTCACAAACAACACAAAGCGATGTCATCTTCCCGGGCAGTCCACCGTaGTGCCCTCGGAGGAGCTTG +
Preference number: 4 (lower is better)
Translates to: EVGKSHLWSQTTQSDVIFPGSPP*CPRRSL
Trigger: CAAGCTCCTCCGAGGGCAGCACGGTGGACTGCCCGG...GAAGATGACATCGCTTTGTGTTGTTTGTGACCAGAGATGTGATTTACCAACTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp CCAGTGACATGCATCGGTGAGGCTGTAGGTTGGTGCCATCTCTGGAGGGAAAGGCATATCAGGTACTTCTaGGCTAAGCTGATCAAGCAG +
Preference number: 4 (lower is better)
Translates to: PVTCIGEAVGWCHLWRERHIRYF*AKLIKQ
Trigger: CTGCTTGATCAGCTTAGCCCAGAAGTACCTGATATG...CCTTTCCCTCCAGAGATGGCACCAACCTACAGCCTCACCGATGCATGTCACTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp CAAGATTGCCTGAGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTTCTCTCCCCCAGGTATaGAGCCAGGTCCTCAGAGGA +
Preference number: 4 (lower is better)
Translates to: QDCLRPPEMSLPCVSGSSSLPQV*SQVLRG
Trigger: TCCTCTGAGGACCTGGCTCCATACCTGGGGGAGAGA...AGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCAATCTTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp TGCCTGAGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTTCTGCACATGCAGGGGGTTaGAGAGCATCAAGGAGCGTT +
Preference number: 4 (lower is better)
Translates to: CLRPPEMSLPCVSGSSGSAHAGG*RASRSV
Trigger: AACGCTCCTTGATGCTCTCCAACCCCCTGCATGTGC...AGAACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR TCA 90 bp GACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTTCTGAGAAGTAGGAGTCCTGCGTCATaGGACGGAACAGTGAGAGGA +
Preference number: 4 (lower is better)
Translates to: DHQKCPCHVSLEVLVLRSRSPAS*DGTVRG
Trigger: TCCTCTCACTGTTCCGTCTCATGACGCAGGACTCCT...ACTTCTCAGAACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR TCA 90 bp CAAGATTGCCTGAGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGATCCCATCAGGAAATaGGACGTCTTGGCTGGGTGC +
Preference number: 4 (lower is better)
Translates to: QDCLRPPEMSLPCVSGSSDPIRK*DVLAGC
Trigger: GCACCCAGCCAAGACGTCTCATTTCCTGATGGGATC...AGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCAATCTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR TCA 90 bp TGCCTGAGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTTCTTGTCCATCCAGCCTTTaGAGGTTGCCACCTGGAGAA +
Preference number: 4 (lower is better)
Translates to: CLRPPEMSLPCVSGSSGSCPSSL*RLPPGE
Trigger: TTCTCCAGGTGGCAACCTTCAAAGGCTGGATGGACA...AGAACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR GCA 90 bp AGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTTCTGAGAAGACCTCCTGTTCTTTCTaGAGCACCTCGAGGGCTTCC +
Preference number: 4 (lower is better)
Translates to: RPPEMSLPCVSGSSGSEKTSCSF*STSRAS
Trigger: GGAAGCCCTCGAGGTGCTGCAGAAAGAACAGGAGGT...CTTCTCAGAACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR GCA 90 bp GGCTGTAGGTTGGTGCCATCTCTGGAGGGAAAGGGTCAGCACAGCAGAGAAAGAACTCATTGCCCTCTGTaGTCGGAAAGGTTCATTCAA +
Preference number: 4 (lower is better)
Translates to: GCRLVPSLEGKGQHSRERTHCPL*SERFIQ
Trigger: TTGAATGAACCTTTCCGAGCACAGAGGGCAATGAGT...TCTTTCTCTGCTGTGCTGACCCTTTCCCTCCAGAGATGGCACCAACCTACAGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR GCA 90 bp GACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTTCTGAGAAGTTGCCCTTCTTGGATGTaGTCAGCTCCAGCAGGCTCA +
Preference number: 4 (lower is better)
Translates to: DHQKCPCHVSLEVLVLRSCPSWM*SAPAGS
Trigger: TGAGCCTGCTGGAGCTGAGCACATCCAAGAAGGGCA...ACTTCTCAGAACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR GCA 90 bp TGCCTGAGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTTCTAAGAAGTCACACATGTaGCAGCGCAGCCTCTCACCA +
Preference number: 4 (lower is better)
Translates to: CLRPPEMSLPCVSGSSGSKKSHM*QRSLSP
Trigger: TGGTGAGAGGCTGCGCTGGCACATGTGTGACTTCTT...AGAACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR GCA 90 bp CTGAAAGTTCAGAAGAGATGTCAAAGTGGGGGAGTATTCTTGGCTTTTGATTCCCAGGTTTTGCGCACCTaGCAGCCCGTGGCCCAAGGA +
Preference number: 4 (lower is better)
Translates to: LKVQKRCQSGGVFLAFDSQVLRT*QPVAQG
Trigger: TCCTTGGGCCACGGGCTGGCAGGTGCGCAAAACCTG...GGAATCAAAAGCCAAGAATACTCCCCCACTTTGACATCTCTTCTGAACTTTCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR GCA 90 bp TGCCTGAGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTTCTGCACCGGAGGGTGGTTaGTATTGGTTCATAGGATGC +
Preference number: 4 (lower is better)
Translates to: CLRPPEMSLPCVSGSSGSAPEGG*YWFIGC
Trigger: GCATCCTATGAACCAATAGCAACCACCCTCCGGTGC...AGAACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR GCA 90 bp GGCTGTAGGTTGGTGCCATCTCTGGAGGGAAAGGGTCAGCACAGCAGAGAAAGACCCACCGTTGTCATTTaGCATGAATGTAACATAGCC +
Preference number: 4 (lower is better)
Translates to: GCRLVPSLEGKGQHSRERPTVVI*HECNIA
Trigger: GGCTATGTTACATTCATGGCAAATGACAACGGTGGG...TCTTTCTCTGCTGTGCTGACCCTTTCCCTCCAGAGATGGCACCAACCTACAGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp GATTGCCTGAGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTAGTCCAACTGAGGCCTaGGCTTCTCACTCTTGTCCT +
Preference number: 4 (lower is better)
Translates to: DCLRPPEMSLPCVSGSSGSPTEA*ASHSCP
Trigger: AGGACAAGAGTGAGAAGCCCAGGCCTCAGTTGGACT...ACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCAATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp CAAGATTGCCTGAGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTAGCTTCCTCACTGAGTaGATCAGGGCTCCCACGATG +
Preference number: 4 (lower is better)
Translates to: QDCLRPPEMSLPCVSGSSSFLTE*IRAPTM
Trigger: CATCGTGGGAGCCCTGATCCACTCAGTGAGGAAGCT...AGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCAATCTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp GAAGTTGGTAAATCACATCTCTGGTCACAAACAACACAAAGCGATGTCATCTTCGAGGCAGTGGACTCCTaGGGAGAGGACCTGCCTGCC +
Preference number: 4 (lower is better)
Translates to: EVGKSHLWSQTTQSDVIFEAVDS*GEDLPA
Trigger: GGCAGGCAGGTCCTCTCCCCAGGAGTCCACTGCCTC...GAAGATGACATCGCTTTGTGTTGTTTGTGACCAGAGATGTGATTTACCAACTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp TGCCTGAGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTTCTCGAAGGCATCAGTCATaGGGTAGTGTTCCATGGCCA +
Preference number: 4 (lower is better)
Translates to: CLRPPEMSLPCVSGSSGSRRHQS*GSVPWP
Trigger: TGGCCATGGAACACTACCCCATGACTGATGCCTTCG...AGAACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp GCGATGTCATCTTCTGAAAGTTCAGAAGAGATGTCAAAGTGGGGGAGTATTCTTCTCCCCGTCATCCTCTaGGGCTGTGAGGTTGTCCGC +
Preference number: 4 (lower is better)
Translates to: AMSSSESSEEMSKWGSILLPVIL*GCEVVR
Trigger: GCGGACAACCTCACAGCCCCAGAGGATGACGGGGAG...AAGAATACTCCCCCACTTTGACATCTCTTCTGAACTTTCAGAAGATGACATCGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp ATTGGGGTGGGGGCTTTCTCAAGGATATCCCTATTCAGCTCTGACACCATGACCCTTATTCAAAGGCCGTaGGATGGGCTTCTGGGGTTT +
Preference number: 4 (lower is better)
Translates to: IGVGAFSRISLFSSDTMTLIQRP*DGLLGF
Trigger: AAACCCCAGAAGCCCATCCCACGGCCTTTGAATAAG...GGTCATGGTGTCAGAGCTGAATAGGGATATCCTTGAGAAAGCCCCCACCCCAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp GATTGCCTGAGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTTTCCACAATTCCCCTTaGAGCCATTGCTGTTGGGCC +
Preference number: 4 (lower is better)
Translates to: DCLRPPEMSLPCVSGSSGFHNSP*SHCCWA
Trigger: GGCCCAACAGCAATGGCTCCAAGGGGAATTGTGGAA...ACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCAATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp CTGAAAGTTCAGAAGAGATGTCAAAGTGGGGGAGTATTCTTGGCTTTTGATTCCCATCCTCCTCAGCCCTaGGCACATGCAGGGGGTTGG +
Preference number: 4 (lower is better)
Translates to: LKVQKRCQSGGVFLAFDSHPPQP*AHAGGW
Trigger: CCAACCCCCTGCATGTGCCCAGGGCTGAGGAGGATG...GGAATCAAAAGCCAAGAATACTCCCCCACTTTGACATCTCTTCTGAACTTTCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR TCA 90 bp TGCCATCTCTGGAGGGAAAGGGTCAGCACAGCAGAGAAAGACATTAGAACCCGCACAGAATCACCACAATaGAGTCGAACACATTCCAGC +
Preference number: 4 (lower is better)
Translates to: CHLWRERVSTAEKDIRTRTESPQ*SRTHSS
Trigger: GCTGGAATGTGTTCGACTTCATTGTGGTGATTCTGT...GCGGGTTCTAATGTCTTTCTCTGCTGTGCTGACCCTTTCCCTCCAGAGATGGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR GCA 90 bp ACATGCATCGGTGAGGCTGTAGGTTGGTGCCATCTCTGGAGGGAAAGGGTCAGCTTCATTCAAGTAGTCTaGAGACAGGAAGTTCTTCTG +
Preference number: 4 (lower is better)
Translates to: TCIGEAVGWCHLWRERVSFIQVV*RQEVLL
Trigger: CAGAAGAACTTCCTGTCTGCAGACTACTTGAATGAA...GCTGACCCTTTCCCTCCAGAGATGGCACCAACCTACAGCCTCACCGATGCATGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR GCA 90 bp CAAGATTGCCTGAGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGAGCACAGACAAGCTaGCCTTCTTGGATGTGCTCA +
Preference number: 4 (lower is better)
Translates to: QDCLRPPEMSLPCVSGSSGAQTS*PSWMCS
Trigger: TGAGCACATCCAAGAAGGGCAGCTTGTCTGTGCTCC...AGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCAATCTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR GCA 90 bp CTGAAAGTTCAGAAGAGATGTCAAAGTGGGGGAGTATTCTTGGCTTTTGATTCCCGGGCCAGTGCTACCTaGAAGTTGTTCACCTCCCCG +
Preference number: 4 (lower is better)
Translates to: LKVQKRCQSGGVFLAFDSRASAT*KLFTSP
Trigger: CGGGGAGGTGAACAACTTGCAGGTAGCACTGGCCCG...GGAATCAAAAGCCAAGAATACTCCCCCACTTTGACATCTCTTCTGAACTTTCAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR GCA 90 bp ACATGCATCGGTGAGGCTGTAGGTTGGTGCCATCTCTGGAGGGAAAGGGTCAGCATGATGTCAAATGCTTaGCTGGTCACAATGTCAAAC +
Preference number: 4 (lower is better)
Translates to: TCIGEAVGWCHLWRERVSMMSNA*LVTMSN
Trigger: GTTTGACATTGTGACCAGGCAAGCATTTGACATCAT...GCTGACCCTTTCCCTCCAGAGATGGCACCAACCTACAGCCTCACCGATGCATGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp GACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTTCTGAGAAGTAGTCCAACTGAGGCCTaGGCTTCTCACTCTTGTCCT +
Preference number: 4 (lower is better)
Translates to: DHQKCPCHVSLEVLVLRSSPTEA*ASHSCP
Trigger: AGGACAAGAGTGAGAAGCCCAGGCCTCAGTTGGACT...ACTTCTCAGAACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp TGCCATCTCTGGAGGGAAAGGGTCAGCACAGCAGAGAAAGACATTAGAACCCGCGATGACCTTCAGTCCTaGGATCACAGAAACAGTCTT +
Preference number: 4 (lower is better)
Translates to: CHLWRERVSTAEKDIRTRDDLQS*DHRNSL
Trigger: AAGACTGTTTCTGTGATCCCAGGACTGAAGGTCATC...GCGGGTTCTAATGTCTTTCTCTGCTGTGCTGACCCTTTCCCTCCAGAGATGGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp AGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTTCTGAGAAGGCTGATCAAGCAGGGTaGGCACTTCAGCTTAGACTC +
Preference number: 4 (lower is better)
Translates to: RPPEMSLPCVSGSSGSEKADQAG*ALQLRL
Trigger: GAGTCTAAGCTGAAGTGCCCACCCTGCTTGATCAGC...CTTCTCAGAACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp GAAGTTGGTAAATCACATCTCTGGTCACAAACAACACAAAGCGATGTCATCTTCGGGGCCACCAAGAGCTaGCTTTGCCAGGTTCCCCAC +
Preference number: 4 (lower is better)
Translates to: EVGKSHLWSQTTQSDVIFGATKS*LCQVPH
Trigger: GTGGGGAACCTGGCAAAGCCAGCTCTTGGTGGCCCC...GAAGATGACATCGCTTTGTGTTGTTTGTGACCAGAGATGTGATTTACCAACTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp GACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTTCTGAGAAGTTTCCACAATTCCCCTTaGAGCCATTGCTGTTGGGCC +
Preference number: 4 (lower is better)
Translates to: DHQKCPCHVSLEVLVLRSFHNSP*SHCCWA
Trigger: GGCCCAACAGCAATGGCTCCAAGGGGAATTGTGGAA...ACTTCTCAGAACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp TGCCATCTCTGGAGGGAAAGGGTCAGCACAGCAGAGAAAGACATTAGAACCCGCGAGGGTGGTTGCTATTaGTTCATAGGATGCTTTGGA +
Preference number: 4 (lower is better)
Translates to: CHLWRERVSTAEKDIRTREGGCY*FIGCFG
Trigger: TCCAAAGCATCCTATGAACCAATAGCAACCACCCTC...GCGGGTTCTAATGTCTTTCTCTGCTGTGCTGACCCTTTCCCTCCAGAGATGGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR TCA 90 bp CTGAAAGTTCAGAAGAGATGTCAAAGTGGGGGAGTATTCTTGGCTTTTGATTCCCGATGGCCAAATACCTaGATCCGGGCCAGTGCTACC +
Preference number: 4 (lower is better)
Translates to: LKVQKRCQSGGVFLAFDSRWPNT*IRASAT
Trigger: GGTAGCACTGGCCCGGATTCAGGTATTTGGCCATCG...GGAATCAAAAGCCAAGAATACTCCCCCACTTTGACATCTCTTCTGAACTTTCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR TCA 90 bp TTTAAAAATATCAATTTTAATGGCCGACCCTCAGGTATTGTCCGGCAACTGCGAGGGCAGAAAAGGCAATaGACTGGGTGGCCTCCGGGT +
Preference number: 4 (lower is better)
Translates to: FKNINFNGRPSGIVRQLRGQKRQ*TGWPPG
Trigger: ACCCGGAGGCCACCCAGTTCATTGCCTTTTCTGCCC...TCGCAGTTGCCGGACAATACCTGAGGGTCGGCCATTAAAATTGATATTTTTAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR GCA 90 bp AGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTTCTGAGAAGACTGACAACACTCATTaGCCTCTGTGCTCGGAAAGG +
Preference number: 4 (lower is better)
Translates to: RPPEMSLPCVSGSSGSEKTDNTH*PLCSER
Trigger: CCTTTCCGAGCACAGAGGGCAATGAGTGTTGTCAGT...CTTCTCAGAACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR GCA 90 bp GCGATGTCATCTTCTGAAAGTTCAGAAGAGATGTCAAAGTGGGGGAGTATTCTTGGTGATGGTGAGCTCTaGGAAGGGGTCAGTCACCAG +
Preference number: 4 (lower is better)
Translates to: AMSSSESSEEMSKWGSILGDGEL*EGVSHQ
Trigger: CTGGTGACTGACCCCTTCGCAGAGCTCACCATCACC...AAGAATACTCCCCCACTTTGACATCTCTTCTGAACTTTCAGAAGATGACATCGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR GCA 90 bp CTGAAAGTTCAGAAGAGATGTCAAAGTGGGGGAGTATTCTTGGCTTTTGATTCCGAAGCAAGCGGAAGGTaGGGAGCACAGACAAGCTGC +
Preference number: 4 (lower is better)
Translates to: LKVQKRCQSGGVFLAFDSEASGR*GAQTSC
Trigger: GCAGCTTGTCTGTGCTCCGCACCTTCCGCTTGCTTC...GGAATCAAAAGCCAAGAATACTCCCCCACTTTGACATCTCTTCTGAACTTTCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR GCA 90 bp CTGAAAGTTCAGAAGAGATGTCAAAGTGGGGGAGTATTCTTGGCTTTTGATTCCACCAAGAGCTGGCTTTaGCAGGTTCCCCACTGCAGC +
Preference number: 4 (lower is better)
Translates to: LKVQKRCQSGGVFLAFDSTKSWL*QVPHCS
Trigger: GCTGCAGTGGGGAACCTGGCAAAGCCAGCTCTTGGT...GGAATCAAAAGCCAAGAATACTCCCCCACTTTGACATCTCTTCTGAACTTTCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR GCA 90 bp TTTAAAAATATCAATTTTAATGGCCGACCCTCAGGTATTGTCCGGCAACTGCGATCAGCCCTGGGCACATaGAGGGGGTTGGAGAGCATC +
Preference number: 4 (lower is better)
Translates to: FKNINFNGRPSGIVRQLRSALGT*RGLESI
Trigger: GATGCTCTCCAACCCCCTGCATGTGCCCAGGGCTGA...TCGCAGTTGCCGGACAATACCTGAGGGTCGGCCATTAAAATTGATATTTTTAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp TGCCTGAGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTTCTTCCTTGATTTCACCCTaGGTCTTCTCTCATTGGCGT +
Preference number: 4 (lower is better)
Translates to: CLRPPEMSLPCVSGSSGSSLISP*VFSHWR
Trigger: ACGCCAATGAGAGAAGACCCAGGGTGAAATCAAGGA...AGAACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp TTTAAAAATATCAATTTTAATGGCCGACCCTCAGGTATTGTCCGGCAACTGCGATGGCAAGCTCACCAGTaGGCACTCCACGCTGTCCCT +
Preference number: 4 (lower is better)
Translates to: FKNINFNGRPSGIVRQLRWQAHQ*ALHAVP
Trigger: AGGGACAGCGTGGAGTGCCCACTGGTGAGCTTGCCA...TCGCAGTTGCCGGACAATACCTGAGGGTCGGCCATTAAAATTGATATTTTTAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp GAAGTTGGTAAATCACATCTCTGGTCACAAACAACACAAAGCGATGTCATCTTCCTTCAGGCGCTCCAGTaGCAAGCTCACCAGTGGGCA +
Preference number: 4 (lower is better)
Translates to: EVGKSHLWSQTTQSDVIFLQALQ*QAHQWA
Trigger: TGCCCACTGGTGAGCTTGCCACTGGAGCGCCTGAAG...GAAGATGACATCGCTTTGTGTTGTTTGTGACCAGAGATGTGATTTACCAACTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp AGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTTCTGAGAAGCTTATTCAAAGGCCGTaGGATGGGCTTCTGGGGTTT +
Preference number: 4 (lower is better)
Translates to: RPPEMSLPCVSGSSGSEKLIQRP*DGLLGF
Trigger: AAACCCCAGAAGCCCATCCCACGGCCTTTGAATAAG...CTTCTCAGAACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp AGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTTCTGAGAAGAGGATGTCCAAACAGTaGATCTTATCTCCGGGGACC +
Preference number: 4 (lower is better)
Translates to: RPPEMSLPCVSGSSGSEKRMSKQ*ILSPGT
Trigger: GGTCCCCGGAGATAAGATCCACTGTTTGGACATCCT...CTTCTCAGAACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
3UTR CAA 72 bp CTTCTCCAAGATTGCCTGAGACCACCAGAAATGTCCTaGCCATGTGTCTCTGGAAGTTCTGGTTCTGAGAAG +
Preference number: 4 (lower is better)
Translates to: LLQDCLRPPEMS*PCVSGSSGSEK
Trigger: CTTCTCAGAACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCAATCTTGGAGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR TCA 90 bp GCGATGTCATCTTCTGAAAGTTCAGAAGAGATGTCAAAGTGGGGGAGTATTCTTGGGAGATATTCACGATaGGGAAGTCCAGCCAGCACC +
Preference number: 4 (lower is better)
Translates to: AMSSSESSEEMSKWGSILGRYSR*GSPAST
Trigger: GGTGCTGGCTGGACTTCCTCATCGTGAATATCTCCC...AAGAATACTCCCCCACTTTGACATCTCTTCTGAACTTTCAGAAGATGACATCGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR TCA 90 bp CACAAACAACACAAAGCGATGTCATCTTCTGAAAGTTCAGAAGAGATGTCAAAGCGAGGAGGACGTTCATaGTGGAGGGAATGGCGCCCA +
Preference number: 4 (lower is better)
Translates to: HKQHKAMSSSESSEEMSKRGGRS*WREWRP
Trigger: TGGGCGCCATTCCCTCCATCATGAACGTCCTCCTCG...CTTTGACATCTCTTCTGAACTTTCAGAAGATGACATCGCTTTGTGTTGTTTGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR TCA 90 bp CTGAAAGTTCAGAAGAGATGTCAAAGTGGGGGAGTATTCTTGGCTTTTGATTCCGTCTTCTCCTCGCTCTaGTTGTCGGTCTCCACCATC +
Preference number: 4 (lower is better)
Translates to: LKVQKRCQSGGVFLAFDSVFSSL*LSVSTI
Trigger: GATGGTGGAGACCGACAATCAGAGCGAGGAGAAGAC...GGAATCAAAAGCCAAGAATACTCCCCCACTTTGACATCTCTTCTGAACTTTCAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR TCA 90 bp TGCCTGAGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTTCTTTGAATAATGGTGGCTaGGATGTCTTCCTGCTTGCA +
Preference number: 4 (lower is better)
Translates to: CLRPPEMSLPCVSGSSGSLNNGG*DVFLLA
Trigger: TGCAAGCAGGAAGACATCTCAGCCACCATTATTCAA...AGAACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR GCA 90 bp CTGAAAGTTCAGAAGAGATGTCAAAGTGGGGGAGTATTCTTGGCTTTTGATTCCTTCCCCTTGAAGAGCTaGAGGCCCACCAAGGCAAAG +
Preference number: 4 (lower is better)
Translates to: LKVQKRCQSGGVFLAFDSFPLKS*RPTKAK
Trigger: CTTTGCCTTGGTGGGCCTGCAGCTCTTCAAGGGGAA...GGAATCAAAAGCCAAGAATACTCCCCCACTTTGACATCTCTTCTGAACTTTCAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR GCA 90 bp GCGATGTCATCTTCTGAAAGTTCAGAAGAGATGTCAAAGTGGGGGAGTATTCTTTTCCCCTTGAAGAGCTaGAGGCCCACCAAGGCAAAG +
Preference number: 4 (lower is better)
Translates to: AMSSSESSEEMSKWGSILFPLKS*RPTKAK
Trigger: CTTTGCCTTGGTGGGCCTGCAGCTCTTCAAGGGGAA...AAGAATACTCCCCCACTTTGACATCTCTTCTGAACTTTCAGAAGATGACATCGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR GCA 90 bp ATTGGGGTGGGGGCTTTCTCAAGGATATCCCTATTCAGCTCTGACACCATGACCGATTTCTGCAATTGTTaGCTGGCTCTGTTCCTCATA +
Preference number: 4 (lower is better)
Translates to: IGVGAFSRISLFSSDTMTDFCNC*LALFLI
Trigger: TATGAGGAACAGAGCCAGGCAACAATTGCAGAAATC...GGTCATGGTGTCAGAGCTGAATAGGGATATCCTTGAGAAAGCCCCCACCCCAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR GCA 90 bp GCGATGTCATCTTCTGAAAGTTCAGAAGAGATGTCAAAGTGGGGGAGTATTCTTACCTCCTGTTCTTTCTaGAGCACCTCGAGGGCTTCC +
Preference number: 4 (lower is better)
Translates to: AMSSSESSEEMSKWGSILTSCSF*STSRAS
Trigger: GGAAGCCCTCGAGGTGCTGCAGAAAGAACAGGAGGT...AAGAATACTCCCCCACTTTGACATCTCTTCTGAACTTTCAGAAGATGACATCGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR GCA 90 bp CACAAACAACACAAAGCGATGTCATCTTCTGAAAGTTCAGAAGAGATGTCAAAGGCGAGGTTGTGTCAATaGCCAGCGCTGCCAGCACCT +
Preference number: 4 (lower is better)
Translates to: HKQHKAMSSSESSEEMSKARLCQ*PALPAP
Trigger: AGGTGCTGGCAGCGCTGGGCATTGACACAACCTCGC...CTTTGACATCTCTTCTGAACTTTCAGAAGATGACATCGCTTTGTGTTGTTTGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR GCA 90 bp GATTGCCTGAGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTCCCACCGTTGTCATTTaGCATGAATGTAACATAGCC +
Preference number: 4 (lower is better)
Translates to: DCLRPPEMSLPCVSGSSGPTVVI*HECNIA
Trigger: GGCTATGTTACATTCATGGCAAATGACAACGGTGGG...ACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCAATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR GCA 90 bp CCAGTGACATGCATCGGTGAGGCTGTAGGTTGGTGCCATCTCTGGAGGGAAAGGACTTCATCTTCATTTTaGATTGAGCTAGATGTGCTA +
Preference number: 4 (lower is better)
Translates to: PVTCIGEAVGWCHLWRERTSSSF*IELDVL
Trigger: TAGCACATCTAGCTCAATGCAAAATGAAGATGAAGT...CCTTTCCCTCCAGAGATGGCACCAACCTACAGCCTCACCGATGCATGTCACTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp TTTAAAAATATCAATTTTAATGGCCGACCCTCAGGTATTGTCCGGCAACTGCGAGCTCGCCATAGAACCTaGGCAGCTGGTTACAGGCCT +
Preference number: 4 (lower is better)
Translates to: FKNINFNGRPSGIVRQLRARHRT*AAGYRP
Trigger: AGGCCTGTAACCAGCTGCCCAGGTTCTATGGCGAGC...TCGCAGTTGCCGGACAATACCTGAGGGTCGGCCATTAAAATTGATATTTTTAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp CAAGATTGCCTGAGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTTCTGCAATTGTTGCCTaGCTCTGTTCCTCATATGCC +
Preference number: 4 (lower is better)
Translates to: QDCLRPPEMSLPCVSGSSSAIVA*LCSSYA
Trigger: GGCATATGAGGAACAGAGCCAGGCAACAATTGCAGA...AGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCAATCTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp AGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTTCTGAGAAGACGACGAGGAAGGAATaGAAGAAGTCACACATGTGC +
Preference number: 4 (lower is better)
Translates to: RPPEMSLPCVSGSSGSEKTTRKE*KKSHMC
Trigger: GCACATGTGTGACTTCTTCCATTCCTTCCTCGTCGT...CTTCTCAGAACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp ACAAACAACACAAAGCGATGTCATCTTCTGAAAGTTCAGAAGAGATGTCAAAGTCCCCGTGGTTCTCCTTaGGGCCACCAAGAGCTGGCT +
Preference number: 4 (lower is better)
Translates to: TNNTKRCHLLKVQKRCQSPRGSP*GHQELA
Trigger: AGCCAGCTCTTGGTGGCCCCAAGGAGAACCACGGGG...ACTTTGACATCTCTTCTGAACTTTCAGAAGATGACATCGCTTTGTGTTGTTTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp TTTAAAAATATCAATTTTAATGGCCGACCCTCAGGTATTGTCCGGCAACTGCGATCTCTCCCCCAGGTATaGAGCCAGGTCCTCAGAGGA +
Preference number: 4 (lower is better)
Translates to: FKNINFNGRPSGIVRQLRSLPQV*SQVLRG
Trigger: TCCTCTGAGGACCTGGCTCCATACCTGGGGGAGAGA...TCGCAGTTGCCGGACAATACCTGAGGGTCGGCCATTAAAATTGATATTTTTAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp GAAGTTGGTAAATCACATCTCTGGTCACAAACAACACAAAGCGATGTCATCTTCGCGAGTGCAGCCTTCTaGGAAACAGTCATCGGGCTC +
Preference number: 4 (lower is better)
Translates to: EVGKSHLWSQTTQSDVIFASAAF*ETVIGL
Trigger: GAGCCCGATGACTGTTTCCCAGAAGGCTGCACTCGC...GAAGATGACATCGCTTTGTGTTGTTTGTGACCAGAGATGTGATTTACCAACTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR TCA 90 bp TTTAAAAATATCAATTTTAATGGCCGACCCTCAGGTATTGTCCGGCAACTGCGAGAGCCCAAGTGGCACTaGATCTGGAAATGGTCCTGC +
Preference number: 4 (lower is better)
Translates to: FKNINFNGRPSGIVRQLREPKWH*IWKWSC
Trigger: GCAGGACCATTTCCAGATTCAGTGCCACTTGGGCTC...TCGCAGTTGCCGGACAATACCTGAGGGTCGGCCATTAAAATTGATATTTTTAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR TCA 90 bp CACAAACAACACAAAGCGATGTCATCTTCTGAAAGTTCAGAAGAGATGTCAAAGTCAGGGCTCCCACGATaGCCTTCAGTCCTGGGATCA +
Preference number: 4 (lower is better)
Translates to: HKQHKAMSSSESSEEMSKSGLPR*PSVLGS
Trigger: TGATCCCAGGACTGAAGGTCATCGTGGGAGCCCTGA...CTTTGACATCTCTTCTGAACTTTCAGAAGATGACATCGCTTTGTGTTGTTTGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR TCA 90 bp GCGATGTCATCTTCTGAAAGTTCAGAAGAGATGTCAAAGTGGGGGAGTATTCTTCCTCGAGGGCTTCCTTaGACTTCTTCTCCTTGGCTT +
Preference number: 4 (lower is better)
Translates to: AMSSSESSEEMSKWGSILPRGLP*TSSPWL
Trigger: AAGCCAAGGAGAAGAAGTTCAAGGAAGCCCTCGAGG...AAGAATACTCCCCCACTTTGACATCTCTTCTGAACTTTCAGAAGATGACATCGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR TCA 90 bp CACAAACAACACAAAGCGATGTCATCTTCTGAAAGTTCAGAAGAGATGTCAAAGAGGACTTGGCCAGCTTaGAGACCCGAAGCAAGCGGA +
Preference number: 4 (lower is better)
Translates to: HKQHKAMSSSESSEEMSKRTWPA*RPEASG
Trigger: TCCGCTTGCTTCGGGTCTTCAAGCTGGCCAAGTCCT...CTTTGACATCTCTTCTGAACTTTCAGAAGATGACATCGCTTTGTGTTGTTTGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR TCA 90 bp CACAAACAACACAAAGCGATGTCATCTTCTGAAAGTTCAGAAGAGATGTCAAAGCGATGGCCAAATACCTaGATCCGGGCCAGTGCTACC +
Preference number: 4 (lower is better)
Translates to: HKQHKAMSSSESSEEMSKRWPNT*IRASAT
Trigger: GGTAGCACTGGCCCGGATTCAGGTATTTGGCCATCG...CTTTGACATCTCTTCTGAACTTTCAGAAGATGACATCGCTTTGTGTTGTTTGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR TCA 90 bp GCGATGTCATCTTCTGAAAGTTCAGAAGAGATGTCAAAGTGGGGGAGTATTCTTTGTCCATCCAGCCTTTaGAGGTTGCCACCTGGAGAA +
Preference number: 4 (lower is better)
Translates to: AMSSSESSEEMSKWGSILCPSSL*RLPPGE
Trigger: TTCTCCAGGTGGCAACCTTCAAAGGCTGGATGGACA...AAGAATACTCCCCCACTTTGACATCTCTTCTGAACTTTCAGAAGATGACATCGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR TCA 90 bp CAAGATTGCCTGAGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTCCAAGACATTCTTTGTaGAGGCAAAGAGGATGTCCA +
Preference number: 4 (lower is better)
Translates to: QDCLRPPEMSLPCVSGSSPRHSL*RQRGCP
Trigger: TGGACATCCTCTTTGCCTTCACAAAGAATGTCTTGG...AGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCAATCTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR TCA 90 bp CAAGATTGCCTGAGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTTTGAATAATGGTGGCTaGGATGTCTTCCTGCTTGCA +
Preference number: 4 (lower is better)
Translates to: QDCLRPPEMSLPCVSGSSLNNGG*DVFLLA
Trigger: TGCAAGCAGGAAGACATCTCAGCCACCATTATTCAA...AGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCAATCTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR GCA 90 bp AGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTTCTGAGAAGACTCATTGCCCTCTGTaGTCGGAAAGGTTCATTCAA +
Preference number: 4 (lower is better)
Translates to: RPPEMSLPCVSGSSGSEKTHCPL*SERFIQ
Trigger: TTGAATGAACCTTTCCGAGCACAGAGGGCAATGAGT...CTTCTCAGAACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR GCA 90 bp GAAGTTGGTAAATCACATCTCTGGTCACAAACAACACAAAGCGATGTCATCTTCTGCCCTTCTTGGATGTaGTCAGCTCCAGCAGGCTCA +
Preference number: 4 (lower is better)
Translates to: EVGKSHLWSQTTQSDVIFCPSWM*SAPAGS
Trigger: TGAGCCTGCTGGAGCTGAGCACATCCAAGAAGGGCA...GAAGATGACATCGCTTTGTGTTGTTTGTGACCAGAGATGTGATTTACCAACTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR GCA 90 bp CTGAAAGTTCAGAAGAGATGTCAAAGTGGGGGAGTATTCTTGGCTTTTGATTCCGCACCGGAGGGTGGTTaGTATTGGTTCATAGGATGC +
Preference number: 4 (lower is better)
Translates to: LKVQKRCQSGGVFLAFDSAPEGG*YWFIGC
Trigger: GCATCCTATGAACCAATAGCAACCACCCTCCGGTGC...GGAATCAAAAGCCAAGAATACTCCCCCACTTTGACATCTCTTCTGAACTTTCAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp ACAAACAACACAAAGCGATGTCATCTTCTGAAAGTTCAGAAGAGATGTCAAAGTCCCGACCAGCTCTGCTaGGAGCTCGCCATAGAACCT +
Preference number: 4 (lower is better)
Translates to: TNNTKRCHLLKVQKRCQSPDQLC*ELAIEP
Trigger: AGGTTCTATGGCGAGCTCCCAGCAGAGCTGGTCGGG...ACTTTGACATCTCTTCTGAACTTTCAGAAGATGACATCGCTTTGTGTTGTTTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp GATTGCCTGAGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTATACTCGAGTTTCTCTaGAAGATCAGTTCGGGTCAT +
Preference number: 4 (lower is better)
Translates to: DCLRPPEMSLPCVSGSSGILEFL*KISSGH
Trigger: ATGACCCGAACTGATCTTCCAGAGAAACTCGAGTAT...ACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCAATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp GCGATGTCATCTTCTGAAAGTTCAGAAGAGATGTCAAAGTGGGGGAGTATTCTTCGAAGGCATCAGTCATaGGGTAGTGTTCCATGGCCA +
Preference number: 4 (lower is better)
Translates to: AMSSSESSEEMSKWGSILRRHQS*GSVPWP
Trigger: TGGCCATGGAACACTACCCCATGACTGATGCCTTCG...AAGAATACTCCCCCACTTTGACATCTCTTCTGAACTTTCAGAAGATGACATCGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp GAAGTTGGTAAATCACATCTCTGGTCACAAACAACACAAAGCGATGTCATCTTCGCACATGCAGGGGGTTaGAGAGCATCAAGGAGCGTT +
Preference number: 4 (lower is better)
Translates to: EVGKSHLWSQTTQSDVIFAHAGG*RASRSV
Trigger: AACGCTCCTTGATGCTCTCCAACCCCCTGCATGTGC...GAAGATGACATCGCTTTGTGTTGTTTGTGACCAGAGATGTGATTTACCAACTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR TCA 90 bp ACAAACAACACAAAGCGATGTCATCTTCTGAAAGTTCAGAAGAGATGTCAAAGTGCCTTCAAGTCCAACTaGGGCCTGGGCTTCTCACTC +
Preference number: 4 (lower is better)
Translates to: TNNTKRCHLLKVQKRCQSAFKSN*GLGFSL
Trigger: GAGTGAGAAGCCCAGGCCTCAGTTGGACTTGAAGGC...ACTTTGACATCTCTTCTGAACTTTCAGAAGATGACATCGCTTTGTGTTGTTTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR GCA 90 bp ACAAACAACACAAAGCGATGTCATCTTCTGAAAGTTCAGAAGAGATGTCAAAGTGAAGTTCTTCTGTCCTaGAGCATCGAGTGCCGGGCC +
Preference number: 4 (lower is better)
Translates to: TNNTKRCHLLKVQKRCQSEVLLS*SIECRA
Trigger: GGCCCGGCACTCGATGCTGCAGGACAGAAGAACTTC...ACTTTGACATCTCTTCTGAACTTTCAGAAGATGACATCGCTTTGTGTTGTTTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR GCA 90 bp GAAGTTGGTAAATCACATCTCTGGTCACAAACAACACAAAGCGATGTCATCTTCGGAGCACAGACAAGCTaGCCTTCTTGGATGTGCTCA +
Preference number: 4 (lower is better)
Translates to: EVGKSHLWSQTTQSDVIFGAQTS*PSWMCS
Trigger: TGAGCACATCCAAGAAGGGCAGCTTGTCTGTGCTCC...GAAGATGACATCGCTTTGTGTTGTTTGTGACCAGAGATGTGATTTACCAACTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR GCA 90 bp GTCACAAACAACACAAAGCGATGTCATCTTCTGAAAGTTCAGAAGAGATGTCAATTCTCTGAGAGGAGCTaGTTTCCCACCAGGGCGAAG +
Preference number: 4 (lower is better)
Translates to: VTNNTKRCHLLKVQKRCQFSERS*FPTRAK
Trigger: CTTCGCCCTGGTGGGAAAGCAGCTCCTCTCAGAGAA...TTGACATCTCTTCTGAACTTTCAGAAGATGACATCGCTTTGTGTTGTTTGTGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR GCA 90 bp GAAGTTGGTAAATCACATCTCTGGTCACAAACAACACAAAGCGATGTCATCTTCTGCCAGGTTCCCCACTaGAGCATTGACAGCATCAGT +
Preference number: 4 (lower is better)
Translates to: EVGKSHLWSQTTQSDVIFCQVPH*SIDSIS
Trigger: ACTGATGCTGTCAATGCTGCAGTGGGGAACCTGGCA...GAAGATGACATCGCTTTGTGTTGTTTGTGACCAGAGATGTGATTTACCAACTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR GCA 90 bp TGCCTGAGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTTCTATGATGTCAAATGCTTaGCTGGTCACAATGTCAAAC +
Preference number: 4 (lower is better)
Translates to: CLRPPEMSLPCVSGSSGSMMSNA*LVTMSN
Trigger: GTTTGACATTGTGACCAGGCAAGCATTTGACATCAT...AGAACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp CACAAACAACACAAAGCGATGTCATCTTCTGAAAGTTCAGAAGAGATGTCAAAGAGCTTCCTCACTGAGTaGATCAGGGCTCCCACGATG +
Preference number: 4 (lower is better)
Translates to: HKQHKAMSSSESSEEMSKSFLTE*IRAPTM
Trigger: CATCGTGGGAGCCCTGATCCACTCAGTGAGGAAGCT...CTTTGACATCTCTTCTGAACTTTCAGAAGATGACATCGCTTTGTGTTGTTTGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp TTTAAAAATATCAATTTTAATGGCCGACCCTCAGGTATTGTCCGGCAACTGCGAGCTGATCAAGCAGGGTaGGCACTTCAGCTTAGACTC +
Preference number: 4 (lower is better)
Translates to: FKNINFNGRPSGIVRQLRADQAG*ALQLRL
Trigger: GAGTCTAAGCTGAAGTGCCCACCCTGCTTGATCAGC...TCGCAGTTGCCGGACAATACCTGAGGGTCGGCCATTAAAATTGATATTTTTAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp CTGAAAGTTCAGAAGAGATGTCAAAGTGGGGGAGTATTCTTGGCTTTTGATTCCAGGATGTCCAAACAGTaGATCTTATCTCCGGGGACC +
Preference number: 4 (lower is better)
Translates to: LKVQKRCQSGGVFLAFDSRMSKQ*ILSPGT
Trigger: GGTCCCCGGAGATAAGATCCACTGTTTGGACATCCT...GGAATCAAAAGCCAAGAATACTCCCCCACTTTGACATCTCTTCTGAACTTTCAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp TTTAAAAATATCAATTTTAATGGCCGACCCTCAGGTATTGTCCGGCAACTGCGAGCTTGCACCGGAGGGTaGTTGCTATTGGTTCATAGG +
Preference number: 4 (lower is better)
Translates to: FKNINFNGRPSGIVRQLRACTGG*LLLVHR
Trigger: CCTATGAACCAATAGCAACCACCCTCCGGTGCAAGC...TCGCAGTTGCCGGACAATACCTGAGGGTCGGCCATTAAAATTGATATTTTTAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR TCA 90 bp GCGATGTCATCTTCTGAAAGTTCAGAAGAGATGTCAAAGTGGGGGAGTATTCTTTCCTGCCATTTCAGATaGGAGATTGTCAGCCTTGTG +
Preference number: 4 (lower is better)
Translates to: AMSSSESSEEMSKWGSILSCHFR*EIVSLV
Trigger: CACAAGGCTGACAATCTCTCATCTGAAATGGCAGGA...AAGAATACTCCCCCACTTTGACATCTCTTCTGAACTTTCAGAAGATGACATCGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR TCA 90 bp GCGATGTCATCTTCTGAAAGTTCAGAAGAGATGTCAAAGTGGGGGAGTATTCTTTCCTCCCAATTGGGCTaGCTGTTGATATCTCGAGAA +
Preference number: 4 (lower is better)
Translates to: AMSSSESSEEMSKWGSILSSQLG*LLISRE
Trigger: TTCTCGAGATATCAACAGTCAGCCCAATTGGGAGGA...AAGAATACTCCCCCACTTTGACATCTCTTCTGAACTTTCAGAAGATGACATCGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR TCA 90 bp ACAAACAACACAAAGCGATGTCATCTTCTGAAAGTTCAGAAGAGATGTCAAAGTCCACGAAGAACTGGTTaGTTCTGCCCAGGACCTTCG +
Preference number: 4 (lower is better)
Translates to: TNNTKRCHLLKVQKRCQSPRRTG*FCPGPS
Trigger: CGAAGGTCCTGGGCAGAATCAACCAGTTCTTCGTGG...ACTTTGACATCTCTTCTGAACTTTCAGAAGATGACATCGCTTTGTGTTGTTTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR GCA 90 bp GAAGTTGGTAAATCACATCTCTGGTCACAAACAACACAAAGCGATGTCATCTTCCAGCATCAGATCCATTaGCACACAACAAGGGATCCG +
Preference number: 4 (lower is better)
Translates to: EVGKSHLWSQTTQSDVIFQHQIH*HTTRDP
Trigger: CGGATCCCTTGTTGTGTGGCAATGGATCTGATGCTG...GAAGATGACATCGCTTTGTGTTGTTTGTGACCAGAGATGTGATTTACCAACTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR GCA 90 bp ACAAACAACACAAAGCGATGTCATCTTCTGAAAGTTCAGAAGAGATGTCAAAGTTTCTCTGAGAGGAGCTaGTTTCCCACCAGGGCGAAG +
Preference number: 4 (lower is better)
Translates to: TNNTKRCHLLKVQKRCQSFSERS*FPTRAK
Trigger: CTTCGCCCTGGTGGGAAAGCAGCTCCTCTCAGAGAA...ACTTTGACATCTCTTCTGAACTTTCAGAAGATGACATCGCTTTGTGTTGTTTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR GCA 90 bp ACAAACAACACAAAGCGATGTCATCTTCTGAAAGTTCAGAAGAGATGTCAAAGTCACTTTTGGACTTGCTaGAGCAGCTCCTGCTGCCCT +
Preference number: 4 (lower is better)
Translates to: TNNTKRCHLLKVQKRCQSHFWTC*SSSCCP
Trigger: AGGGCAGCAGGAGCTGCTGCAGCAAGTCCAAAAGTG...ACTTTGACATCTCTTCTGAACTTTCAGAAGATGACATCGCTTTGTGTTGTTTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084787.6
CDS-3UTR GCA 90 bp GTCACAAACAACACAAAGCGATGTCATCTTCTGAAAGTTCAGAAGAGATGTCAATCACACTTTTGGACTTaGTGCAGCAGCTCCTGCCCT +
Preference number: 4 (lower is better)
Translates to: VTNNTKRCHLLKVQKRCQSHFWT*CSSSCP
Trigger: AGGGCAGGAGCTGCTGCAGCAAGTCCAAAAGTGTGA...TTGACATCTCTTCTGAACTTTCAGAAGATGACATCGCTTTGTGTTGTTTGTGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp GCGATGTCATCTTCTGAAAGTTCAGAAGAGATGTCAAAGTGGGGGAGTATTCTTTCTGCAATTGTTGCCTaGCTCTGTTCCTCATATGCC +
Preference number: 4 (lower is better)
Translates to: AMSSSESSEEMSKWGSILSAIVA*LCSSYA
Trigger: GGCATATGAGGAACAGAGCCAGGCAACAATTGCAGA...AAGAATACTCCCCCACTTTGACATCTCTTCTGAACTTTCAGAAGATGACATCGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp CTGAAAGTTCAGAAGAGATGTCAAAGTGGGGGAGTATTCTTGGCTTTTGATTCCTCCTTGATTTCACCCTaGGTCTTCTCTCATTGGCGT +
Preference number: 4 (lower is better)
Translates to: LKVQKRCQSGGVFLAFDSSLISP*VFSHWR
Trigger: ACGCCAATGAGAGAAGACCCAGGGTGAAATCAAGGA...GGAATCAAAAGCCAAGAATACTCCCCCACTTTGACATCTCTTCTGAACTTTCAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp ACAAACAACACAAAGCGATGTCATCTTCTGAAAGTTCAGAAGAGATGTCAAAGTTGGAACACACTGCTGTaGCTAGCCCTGCGTCTTCCA +
Preference number: 4 (lower is better)
Translates to: TNNTKRCHLLKVQKRCQSWNTLL*LALRLP
Trigger: TGGAAGACGCAGGGCTAGCCACAGCAGTGTGTTCCA...ACTTTGACATCTCTTCTGAACTTTCAGAAGATGACATCGCTTTGTGTTGTTTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp GACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTTCTGAGAAGTATTCTGATTAGGTTTTaGGATTCTAAGAGGGCCAGA +
Preference number: 4 (lower is better)
Translates to: DHQKCPCHVSLEVLVLRSILIRF*DSKRAR
Trigger: TCTGGCCCTCTTAGAATCCCAAAACCTAATCAGAAT...ACTTCTCAGAACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
3UTR CAA 72 bp TTAAAAATATCAATTTTAATGGCCGACCCTCAGGTATaGTCCGGCAACTGCGAGCATGCAGTCATGCAAACC +
Preference number: 4 (lower is better)
Translates to: LKISILMADPQV*SGNCEHAVMQT
Trigger: GGTTTGCATGACTGCATGCTCGCAGTTGCCGGACAATACCTGAGGGTCGGCCATTAAAATTGATATTTTTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR TCA 90 bp GCGATGTCATCTTCTGAAAGTTCAGAAGAGATGTCAAAGTGGGGGAGTATTCTTATTGACCAGGTAGAATaGTCCAAGGAAGATGACCAG +
Preference number: 4 (lower is better)
Translates to: AMSSSESSEEMSKWGSILIDQVE*SKEDDQ
Trigger: CTGGTCATCTTCCTTGGATCATTCTACCTGGTCAAT...AAGAATACTCCCCCACTTTGACATCTCTTCTGAACTTTCAGAAGATGACATCGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR TCA 90 bp ACAAACAACACAAAGCGATGTCATCTTCTGAAAGTTCAGAAGAGATGTCAAAGTCCTCGAGGGCTTCCTTaGACTTCTTCTCCTTGGCTT +
Preference number: 4 (lower is better)
Translates to: TNNTKRCHLLKVQKRCQSPRGLP*TSSPWL
Trigger: AAGCCAAGGAGAAGAAGTTCAAGGAAGCCCTCGAGG...ACTTTGACATCTCTTCTGAACTTTCAGAAGATGACATCGCTTTGTGTTGTTTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR GCA 90 bp ACAAACAACACAAAGCGATGTCATCTTCTGAAAGTTCAGAAGAGATGTCAAAGTCTAGGAAAGACATCCTaGGCTGGTTGTAAGGGTCGG +
Preference number: 4 (lower is better)
Translates to: TNNTKRCHLLKVQKRCQSLGKTS*AGCKGR
Trigger: CCGACCCTTACAACCAGCGCAGGATGTCTTTCCTAG...ACTTTGACATCTCTTCTGAACTTTCAGAAGATGACATCGCTTTGTGTTGTTTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp CACAAACAACACAAAGCGATGTCATCTTCTGAAAGTTCAGAAGAGATGTCAAAGGCTGTCATAGGATGGTaGGAAAGACGTAGCAGAAGC +
Preference number: 4 (lower is better)
Translates to: HKQHKAMSSSESSEEMSKAVIGW*ERRSRS
Trigger: GCTTCTGCTACGTCTTTCCCACCATCCTATGACAGC...CTTTGACATCTCTTCTGAACTTTCAGAAGATGACATCGCTTTGTGTTGTTTGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR TCA 90 bp GAAGTTGGTAAATCACATCTCTGGTCACAAACAACACAAAGCGATGTCATCTTCACAGAATCACCACAATaGAGTCGAACACATTCCAGC +
Preference number: 4 (lower is better)
Translates to: EVGKSHLWSQTTQSDVIFTESPQ*SRTHSS
Trigger: GCTGGAATGTGTTCGACTTCATTGTGGTGATTCTGT...GAAGATGACATCGCTTTGTGTTGTTTGTGACCAGAGATGTGATTTACCAACTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR TCA 90 bp GAAGTTGGTAAATCACATCTCTGGTCACAAACAACACAAAGCGATGTCATCTTCCCAAGACATTCTTTGTaGAGGCAAAGAGGATGTCCA +
Preference number: 4 (lower is better)
Translates to: EVGKSHLWSQTTQSDVIFPRHSL*RQRGCP
Trigger: TGGACATCCTCTTTGCCTTCACAAAGAATGTCTTGG...GAAGATGACATCGCTTTGTGTTGTTTGTGACCAGAGATGTGATTTACCAACTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR GCA 90 bp ACAAACAACACAAAGCGATGTCATCTTCTGAAAGTTCAGAAGAGATGTCAAAGTCAGCATCAGATCCATTaGCACACAACAAGGGATCCG +
Preference number: 4 (lower is better)
Translates to: TNNTKRCHLLKVQKRCQSQHQIH*HTTRDP
Trigger: CGGATCCCTTGTTGTGTGGCAATGGATCTGATGCTG...ACTTTGACATCTCTTCTGAACTTTCAGAAGATGACATCGCTTTGTGTTGTTTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR GCA 90 bp CTGAAAGTTCAGAAGAGATGTCAAAGTGGGGGAGTATTCTTGGCTTTTGATTCCGATTTCTGCAATTGTTaGCTGGCTCTGTTCCTCATA +
Preference number: 4 (lower is better)
Translates to: LKVQKRCQSGGVFLAFDSDFCNC*LALFLI
Trigger: TATGAGGAACAGAGCCAGGCAACAATTGCAGAAATC...GGAATCAAAAGCCAAGAATACTCCCCCACTTTGACATCTCTTCTGAACTTTCAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp CTGAAAGTTCAGAAGAGATGTCAAAGTGGGGGAGTATTCTTGGCTTTTGATTCCATACTCGAGTTTCTCTaGAAGATCAGTTCGGGTCAT +
Preference number: 4 (lower is better)
Translates to: LKVQKRCQSGGVFLAFDSILEFL*KISSGH
Trigger: ATGACCCGAACTGATCTTCCAGAGAAACTCGAGTAT...GGAATCAAAAGCCAAGAATACTCCCCCACTTTGACATCTCTTCTGAACTTTCAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp GAAGTTGGTAAATCACATCTCTGGTCACAAACAACACAAAGCGATGTCATCTTCGATGACCTTCAGTCCTaGGATCACAGAAACAGTCTT +
Preference number: 4 (lower is better)
Translates to: EVGKSHLWSQTTQSDVIFDDLQS*DHRNSL
Trigger: AAGACTGTTTCTGTGATCCCAGGACTGAAGGTCATC...GAAGATGACATCGCTTTGTGTTGTTTGTGACCAGAGATGTGATTTACCAACTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR TCA 90 bp ACAAACAACACAAAGCGATGTCATCTTCTGAAAGTTCAGAAGAGATGTCAAAGTTCCTCCCAATTGGGCTaGCTGTTGATATCTCGAGAA +
Preference number: 4 (lower is better)
Translates to: TNNTKRCHLLKVQKRCQSSSQLG*LLISRE
Trigger: TTCTCGAGATATCAACAGTCAGCCCAATTGGGAGGA...ACTTTGACATCTCTTCTGAACTTTCAGAAGATGACATCGCTTTGTGTTGTTTGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR GCA 90 bp GCGATGTCATCTTCTGAAAGTTCAGAAGAGATGTCAAAGTGGGGGAGTATTCTTTTCATTCAAGTAGTCTaGAGACAGGAAGTTCTTCTG +
Preference number: 4 (lower is better)
Translates to: AMSSSESSEEMSKWGSILFIQVV*RQEVLL
Trigger: CAGAAGAACTTCCTGTCTGCAGACTACTTGAATGAA...AAGAATACTCCCCCACTTTGACATCTCTTCTGAACTTTCAGAAGATGACATCGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp GTCACAAACAACACAAAGCGATGTCATCTTCTGAAAGTTCAGAAGAGATGTCAACATATCAGGTACTTCTaGGCTAAGCTGATCAAGCAG +
Preference number: 4 (lower is better)
Translates to: VTNNTKRCHLLKVQKRCQHIRYF*AKLIKQ
Trigger: CTGCTTGATCAGCTTAGCCCAGAAGTACCTGATATG...TTGACATCTCTTCTGAACTTTCAGAAGATGACATCGCTTTGTGTTGTTTGTGAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp TTTAAAAATATCAATTTTAATGGCCGACCCTCAGGTATTGTCCGGCAACTGCGATGTCAAATGCTTGCCTaGTCACAATGTCAAACACGA +
Preference number: 4 (lower is better)
Translates to: FKNINFNGRPSGIVRQLRCQMLA*SQCQTR
Trigger: TCGTGTTTGACATTGTGACCAGGCAAGCATTTGACA...TCGCAGTTGCCGGACAATACCTGAGGGTCGGCCATTAAAATTGATATTTTTAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR TCA 90 bp ACAAACAACACAAAGCGATGTCATCTTCTGAAAGTTCAGAAGAGATGTCAAAGTATTGACCAGGTAGAATaGTCCAAGGAAGATGACCAG +
Preference number: 4 (lower is better)
Translates to: TNNTKRCHLLKVQKRCQSIDQVE*SKEDDQ
Trigger: CTGGTCATCTTCCTTGGATCATTCTACCTGGTCAAT...ACTTTGACATCTCTTCTGAACTTTCAGAAGATGACATCGCTTTGTGTTGTTTGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp GTCACAAACAACACAAAGCGATGTCATCTTCTGAAAGTTCAGAAGAGATGTCAATGTCAAATGCTTGCCTaGTCACAATGTCAAACACGA +
Preference number: 4 (lower is better)
Translates to: VTNNTKRCHLLKVQKRCQCQMLA*SQCQTR
Trigger: TCGTGTTTGACATTGTGACCAGGCAAGCATTTGACA...TTGACATCTCTTCTGAACTTTCAGAAGATGACATCGCTTTGTGTTGTTTGTGAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp ACAAACAACACAAAGCGATGTCATCTTCTGAAAGTTCAGAAGAGATGTCAAAGTGAGGGTGGTTGCTATTaGTTCATAGGATGCTTTGGA +
Preference number: 4 (lower is better)
Translates to: TNNTKRCHLLKVQKRCQSEGGCY*FIGCFG
Trigger: TCCAAAGCATCCTATGAACCAATAGCAACCACCCTC...ACTTTGACATCTCTTCTGAACTTTCAGAAGATGACATCGCTTTGTGTTGTTTGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CCA 90 bp ACAAACAACACAAAGCGATGTCATCTTCTGAAAGTTCAGAAGAGATGTCAAAGTATTCTGATTAGGTTTTaGGATTCTAAGAGGGCCAGA +
Preference number: 4 (lower is better)
Translates to: TNNTKRCHLLKVQKRCQSILIRF*DSKRAR
Trigger: TCTGGCCCTCTTAGAATCCCAAAACCTAATCAGAAT...ACTTTGACATCTCTTCTGAACTTTCAGAAGATGACATCGCTTTGTGTTGTTTGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR GCA 90 bp ACAAACAACACAAAGCGATGTCATCTTCTGAAAGTTCAGAAGAGATGTCAAAGTACTTCATCTTCATTTTaGATTGAGCTAGATGTGCTA +
Preference number: 4 (lower is better)
Translates to: TNNTKRCHLLKVQKRCQSTSSSF*IELDVL
Trigger: TAGCACATCTAGCTCAATGCAAAATGAAGATGAAGT...ACTTTGACATCTCTTCTGAACTTTCAGAAGATGACATCGCTTTGTGTTGTTTGT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS GCA 90 bp GGATCTTCCTCAGGATCTCCTCTGGGTCCGGGCAGTCCACCGTGCTaGCCTCGGAGGAGCTTGTGTCATCCACTCCCTCGGCAGGGACCC +
Preference number: 5 (lower is better)
Translates to: GSSSGSPLGPGSPPC*PRRSLCHPLPRQGP
Trigger: GGGTCCCTGCCGAGGGAGTGGATGACACAAGCTCCTCCGAGGGCAGCACGGTGGACTGCCCGGACCCAGAGGAGATCCTGAGGAAGATCC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS CCA 90 bp GTCCAGCTCCTCCGCCAGCTCAGGGATCTTCCTCAGGATCTCCTCTaGGTCCGGGCAGTCCACCGTGCTGCCCTCGGAGGAGCTTGTGTC +
Preference number: 5 (lower is better)
Translates to: VQLLRQLRDLPQDLL*VRAVHRAALGGACV
Trigger: GACACAAGCTCCTCCGAGGGCAGCACGGTGGACTGCCCGGACCCAGAGGAGATCCTGAGGAAGATCCCTGAGCTGGCGGAGGAGCTGGAC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS GCA 90 bp CAGGGATCTTCCTCAGGATCTCCTCTGGGTCCGGGCAGTCCACCGTaGTGCCCTCGGAGGAGCTTGTGTCATCCACTCCCTCGGCAGGGA +
Preference number: 5 (lower is better)
Translates to: QGSSSGSPLGPGSPP*CPRRSLCHPLPRQG
Trigger: TCCCTGCCGAGGGAGTGGATGACACAAGCTCCTCCGAGGGCAGCACGGTGGACTGCCCGGACCCAGAGGAGATCCTGAGGAAGATCCCTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS CCA 90 bp CCAGGGGCTCCCCGACCAGCTCTGCTGGGAGCTCGCCATAGAACCTaGGCAGCTGGTTACAGGCCTTCAAGTCCAACTGAGGCCTGGGCT +
Preference number: 5 (lower is better)
Translates to: PGAPRPALLGARHRT*AAGYRPSSPTEAWA
Trigger: AGCCCAGGCCTCAGTTGGACTTGAAGGCCTGTAACCAGCTGCCCAGGTTCTATGGCGAGCTCCCAGCAGAGCTGGTCGGGGAGCCCCTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS GCA 90 bp CCGGAAGCCCGGAGTGTCTGCTGGTACAGCCGTTCCCAGGAGTCCTaGGTCATGAGACGGAACAGTGAGAGGAACGCCCACGCGAAGGAA +
Preference number: 5 (lower is better)
Translates to: PEARSVCWYSRSQES*VMRRNSERNAHAKE
Trigger: TTCCTTCGCGTGGGCGTTCCTCTCACTGTTCCGTCTCATGACGCAGGACTCCTGGGAACGGCTGTACCAGCAGACACTCCGGGCTTCCGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS TCA 90 bp AGGTCCTCAGAGGACATCCCGGAGGGTGGGCTTCGGGCTGCCTGGTaGTCTTCACACTTTTGGACTTGCTGCAGCAGCTCCTGCTGCCCT +
Preference number: 5 (lower is better)
Translates to: RSSEDIPEGGLRAAW*SSHFWTCCSSSCCP
Trigger: AGGGCAGCAGGAGCTGCTGCAGCAAGTCCAAAAGTGTGAAGATCACCAGGCAGCCCGAAGCCCACCCTCCGGGATGTCCTCTGAGGACCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000214408.2
CDS GCA 90 bp TGGAGCCAGGTCCTCAGAGGACATCCCGGAGGGTGGGCTTCGGGCTaGCTGGTGATCTTCACACTTTTGGACTTGCTGCAGCAGCTCCTG +
Preference number: 5 (lower is better)
Translates to: WSQVLRGHPGGWASG*LVIFTLLDLLQQLL
Trigger: CAGGAGCTGCTGCAGCAAGTCCAAAAGTGTGAAGATCACCAGGCAGCCCGAAGCCCACCCTCCGGGATGTCCTCTGAGGACCTGGCTCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS-3UTR CAA 90 bp GCCATCTCTGGAGGGAAAGGGTCAGCACAGCAGAGAAAGACATTAGAACCCGCCTTAGGTCTGCCCTTCTaGGCGGCGCGGTGGGCAGCG +
Preference number: 5 (lower is better)
Translates to: AISGGKGSAQQRKTLEPALGLPF*AARWAA
Trigger: CGCTGCCCACCGCGCCGCCAAGAAGGGCAGACCTAA...GGCGGGTTCTAATGTCTTTCTCTGCTGTGCTGACCCTTTCCCTCCAGAGATGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS GCA 90 bp CAAGTAGTCTGCAGACAGGAAGTTCTTCTGTCCTGCAGCATCGAGTaGCGGGCCTTCAGGCGCTCCAGTGGCAAGCTCACCAGTGGGCAC +
Preference number: 5 (lower is better)
Translates to: QVVCRQEVLLSCSIE*RAFRRSSGKLTSGH
Trigger: GTGCCCACTGGTGAGCTTGCCACTGGAGCGCCTGAAGGCCCGGCACTCGATGCTGCAGGACAGAAGAACTTCCTGTCTGCAGACTACTTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS GCA 90 bp AATGGCCCGACTGGCCCGATGGCCAAATACCTGAATCCGGGCCAGTaGTACCTGCAAGTTGTTCACCTCCCCGTCATCCTCTGGGGCTGT +
Preference number: 5 (lower is better)
Translates to: NGPTGPMAKYLNPGQ*YLQVVHLPVILWGC
Trigger: ACAGCCCCAGAGGATGACGGGGAGGTGAACAACTTGCAGGTAGCACTGGCCCGGATTCAGGTATTTGGCCATCGGGCCAGTCGGGCCATT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS-3UTR CAA 90 bp GGCTGTAGGTTGGTGCCATCTCTGGAGGGAAAGGGTCAGCACAGCAGAGAAAGATCCCCGTGGTTCTCCTaGGGGCCACCAAGAGCTGGC +
Preference number: 5 (lower is better)
Translates to: GCRLVPSLEGKGQHSRERSPWFS*GPPRAG
Trigger: GCCAGCTCTTGGTGGCCCCAAGGAGAACCACGGGGA...TCTTTCTCTGCTGTGCTGACCCTTTCCCTCCAGAGATGGCACCAACCTACAGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS GCA 90 bp GCACCTGCCAGCCCGTGGCCCAAGGAAACTTACTGGTGTTCACTTTaGAGCAGGGACAGCGGCGAGTGCAGCCTTCTGGGAAACAGTCAT +
Preference number: 5 (lower is better)
Translates to: APASPWPKETYWCSL*SRDSGECSLLGNSH
Trigger: ATGACTGTTTCCCAGAAGGCTGCACTCGCCGCTGTCCCTGCTGCAAAGTGAACACCAGTAAGTTTCCTTGGGCCACGGGCTGGCAGGTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS CCA 90 bp ATGGGCACAGAGACCCACACGTTAGGATCAGTGATGAAGTCCCCGTaGTTCTCCTTGGGGCCACCAAGAGCTGGCTTTGCCAGGTTCCCC +
Preference number: 5 (lower is better)
Translates to: MGTETHTLGSVMKSP*FSLGPPRAGFARFP
Trigger: GGGGAACCTGGCAAAGCCAGCTCTTGGTGGCCCCAAGGAGAACCACGGGGACTTCATCACTGATCCTAACGTGTGGGTCTCTGTGCCCAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS TCA 90 bp AGAAACAGTCTTCAGGGCCCTGAGAACTCGGAATGTCCGCAGGCCTaGGATTCCTCGGAGGTCTATCGCTGCACCCACATACGCCAGGGT +
Preference number: 5 (lower is better)
Translates to: RNSLQGPENSECPQA*DSSEVYRCTHIRQG
Trigger: ACCCTGGCGTATGTGGGTGCAGCGATAGACCTCCGAGGAATCTCAGGCCTGCGGACATTCCGAGTTCTCAGGGCCCTGAAGACTGTTTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS GCA 90 bp AAGGAAACTTACTGGTGTTCACTTTGCAGCAGGGACAGCGGCGAGTaGAGCCTTCTGGGAAACAGTCATCGGGCTCGTCCAGCTCCTCCG +
Preference number: 5 (lower is better)
Translates to: KETYWCSLCSRDSGE*SLLGNSHRARPAPP
Trigger: CGGAGGAGCTGGACGAGCCCGATGACTGTTTCCCAGAAGGCTGCACTCGCCGCTGTCCCTGCTGCAAAGTGAACACCAGTAAGTTTCCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS CCA 90 bp GTTGGCCCTGTCACTCAGGCCCCTGGTGACGCTGTCATAGGATGGTaGGAAAGACGTAGCAGAAGCAGTTTCCGATTTGTCTGGGAGCCC +
Preference number: 5 (lower is better)
Translates to: VGPVTQAPGDAVIGW*ERRSRSSFRFVWEP
Trigger: GGGCTCCCAGACAAATCGGAAACTGCTTCTGCTACGTCTTTCCCACCATCCTATGACAGCGTCACCAGGGGCCTGAGTGACAGGGCCAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS-3UTR CAA 90 bp CCAGTGACATGCATCGGTGAGGCTGTAGGTTGGTGCCATCTCTGGAGGGAAAGGGGGAATAGAGCGAGGTaGTGTCAATGCCCAGCGCTG +
Preference number: 5 (lower is better)
Translates to: PVTCIGEAVGWCHLWRERGNRAR*CQCPAL
Trigger: CAGCGCTGGGCATTGACACAACCTCGCTCTATTCCC...CCTTTCCCTCCAGAGATGGCACCAACCTACAGCCTCACCGATGCATGTCACTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CAA 90 bp TGCCATCTCTGGAGGGAAAGGGTCAGCACAGCAGAGAAAGACATTAGAACCCGCTGCCCTCGGAGGAGCTaGTGTCATCCACTCCCTCGG +
Preference number: 5 (lower is better)
Translates to: CHLWRERVSTAEKDIRTRCPRRS*CHPLPR
Trigger: CCGAGGGAGTGGATGACACAAGCTCCTCCGAGGGCA...GCGGGTTCTAATGTCTTTCTCTGCTGTGCTGACCCTTTCCCTCCAGAGATGGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CAA 90 bp ACATGCATCGGTGAGGCTGTAGGTTGGTGCCATCTCTGGAGGGAAAGGGTCAGCGTGAACCGTCTGAAGTaGGTAGTTCCCACGGACCCA +
Preference number: 5 (lower is better)
Translates to: TCIGEAVGWCHLWRERVSVNRLK*VVPTDP
Trigger: TGGGTCCGTGGGAACTACCAACTTCAGACGGTTCAC...GCTGACCCTTTCCCTCCAGAGATGGCACCAACCTACAGCCTCACCGATGCATGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CAA 90 bp ATTGGGGTGGGGGCTTTCTCAAGGATATCCCTATTCAGCTCTGACACCATGACCAGGATGAAGGTCAGGTaGCCCAGGGCCCCCACAGAG +
Preference number: 5 (lower is better)
Translates to: IGVGAFSRISLFSSDTMTRMKVR*PRAPTE
Trigger: CTCTGTGGGGGCCCTGGGCAACCTGACCTTCATCCT...GGTCATGGTGTCAGAGCTGAATAGGGATATCCTTGAGAAAGCCCCCACCCCAAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS TCA 90 bp CCGGAGGGCACGGAGAGTCCGAAGGGCTTTGATGGACGCCACGTCTaGATACTCGAGGATCTTGGCTATGAGGCTTGTGAGGGAGATATT +
Preference number: 5 (lower is better)
Translates to: PEGTESPKGFDGRHV*ILEDLGYEACEGDI
Trigger: AATATCTCCCTCACAAGCCTCATAGCCAAGATCCTCGAGTATTCAGACGTGGCGTCCATCAAAGCCCTTCGGACTCTCCGTGCCCTCCGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS GCA 90 bp GAAAGGTTCATTCAAGTAGTCTGCAGACAGGAAGTTCTTCTGTCCTaGAGCATCGAGTGCCGGGCCTTCAGGCGCTCCAGTGGCAAGCTC +
Preference number: 5 (lower is better)
Translates to: ERFIQVVCRQEVLLS*SIECRAFRRSSGKL
Trigger: GAGCTTGCCACTGGAGCGCCTGAAGGCCCGGCACTCGATGCTGCAGGACAGAAGAACTTCCTGTCTGCAGACTACTTGAATGAACCTTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS-3UTR CAA 90 bp ATTGGGGTGGGGGCTTTCTCAAGGATATCCCTATTCAGCTCTGACACCATGACCCACCAAGAGCTGGCTTaGCCAGGTTCCCCACTGCAG +
Preference number: 5 (lower is better)
Translates to: IGVGAFSRISLFSSDTMTHQELA*PGSPLQ
Trigger: CTGCAGTGGGGAACCTGGCAAAGCCAGCTCTTGGTG...GGTCATGGTGTCAGAGCTGAATAGGGATATCCTTGAGAAAGCCCCCACCCCAAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CAA 90 bp GCCATCTCTGGAGGGAAAGGGTCAGCACAGCAGAGAAAGACATTAGAACCCGCCTTACTGGTGTTCACTTaGCAGCAGGGACAGCGGCGA +
Preference number: 5 (lower is better)
Translates to: AISGGKGSAQQRKTLEPALLVFT*QQGQRR
Trigger: TCGCCGCTGTCCCTGCTGCAAAGTGAACACCAGTAA...GGCGGGTTCTAATGTCTTTCTCTGCTGTGCTGACCCTTTCCCTCCAGAGATGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CAA 90 bp CCAGTGACATGCATCGGTGAGGCTGTAGGTTGGTGCCATCTCTGGAGGGAAAGGTGCACCGGAGGGTGGTaGCTATTGGTTCATAGGATG +
Preference number: 5 (lower is better)
Translates to: PVTCIGEAVGWCHLWRERCTGGW*LLVHRM
Trigger: CATCCTATGAACCAATAGCAACCACCCTCCGGTGCA...CCTTTCCCTCCAGAGATGGCACCAACCTACAGCCTCACCGATGCATGTCACTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CAA 90 bp TGCCTGAGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTTCTAGCAGCTCCTGCCCTTaGGGGCTCTCTTCCTGCCAG +
Preference number: 5 (lower is better)
Translates to: CLRPPEMSLPCVSGSSGSSSSCP*GLSSCQ
Trigger: CTGGCAGGAAGAGAGCCCCAAAGGGCAGGAGCTGCT...AGAACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213392.2
CDS GCA 90 bp GTTCTCCTTGGGGCCACCAAGAGCTGGCTTTGCCAGGTTCCCCACTaGAGCATTGACAGCATCAGTAGCAATGTGGTTCTCAGCTTTGCA +
Preference number: 5 (lower is better)
Translates to: VLLGATKSWLCQVPH*SIDSISSNVVLSFA
Trigger: TGCAAAGCTGAGAACCACATTGCTACTGATGCTGTCAATGCTGCAGTGGGGAACCTGGCAAAGCCAGCTCTTGGTGGCCCCAAGGAGAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS CCA 90 bp AATGAGACGTCTTGGCTGGGTGCTCGGAAGTGGAACACACTGCTGTaGCTAGCCCTGCGTCTTCCAGAAGAAAGGCCTAGGAAAGACATC +
Preference number: 5 (lower is better)
Translates to: NETSWLGARKWNTLL*LALRLPEERPRKDI
Trigger: GATGTCTTTCCTAGGCCTTTCTTCTGGAAGACGCAGGGCTAGCCACAGCAGTGTGTTCCACTTCCGAGCACCCAGCCAAGACGTCTCATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS CCA 90 bp AAGATCCCATCAGGAAATGAGACGTCTTGGCTGGGTGCTCGGAAGTaGAACACACTGCTGTGGCTAGCCCTGCGTCTTCCAGAAGAAAGG +
Preference number: 5 (lower is better)
Translates to: KIPSGNETSWLGARK*NTLLWLALRLPEER
Trigger: CCTTTCTTCTGGAAGACGCAGGGCTAGCCACAGCAGTGTGTTCCACTTCCGAGCACCCAGCCAAGACGTCTCATTTCCTGATGGGATCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS CCA 90 bp AATGTTGGCCCTGTCACTCAGGCCCCTGGTGACGCTGTCATAGGATaGTGGGAAAGACGTAGCAGAAGCAGTTTCCGATTTGTCTGGGAG +
Preference number: 5 (lower is better)
Translates to: NVGPVTQAPGDAVIG*WERRSRSSFRFVWE
Trigger: CTCCCAGACAAATCGGAAACTGCTTCTGCTACGTCTTTCCCACCATCCTATGACAGCGTCACCAGGGGCCTGAGTGACAGGGCCAACATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS-3UTR CAA 90 bp TGCCTGAGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTTCTCAGGACTTGGCCAGCTaGAAGACCCGAAGCAAGCGG +
Preference number: 5 (lower is better)
Translates to: CLRPPEMSLPCVSGSSGSQDLAS*KTRSKR
Trigger: CCGCTTGCTTCGGGTCTTCAAGCTGGCCAAGTCCTG...AGAACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CAA 90 bp CAAGATTGCCTGAGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTTGCCCTCGGAGGAGCTaGTGTCATCCACTCCCTCGG +
Preference number: 5 (lower is better)
Translates to: QDCLRPPEMSLPCVSGSSCPRRS*CHPLPR
Trigger: CCGAGGGAGTGGATGACACAAGCTCCTCCGAGGGCA...AGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCAATCTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CAA 90 bp ACATGCATCGGTGAGGCTGTAGGTTGGTGCCATCTCTGGAGGGAAAGGGTCAGCTCTGGGAGCCCACCGTaGTCATTTGCCATGAATGTA +
Preference number: 5 (lower is better)
Translates to: TCIGEAVGWCHLWRERVSSGSPP*SFAMNV
Trigger: TACATTCATGGCAAATGACAACGGTGGGCTCCCAGA...GCTGACCCTTTCCCTCCAGAGATGGCACCAACCTACAGCCTCACCGATGCATGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CAA 90 bp TGCCATCTCTGGAGGGAAAGGGTCAGCACAGCAGAGAAAGACATTAGAACCCGCGAAGCAGTTTCCGATTaGTCTGGGAGCCCACCGTTG +
Preference number: 5 (lower is better)
Translates to: CHLWRERVSTAEKDIRTREAVSD*SGSPPL
Trigger: CAACGGTGGGCTCCCAGACAAATCGGAAACTGCTTC...GCGGGTTCTAATGTCTTTCTCTGCTGTGCTGACCCTTTCCCTCCAGAGATGGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS TCA 90 bp CTGCCAGCACCTCCTGTTCTTTCTGCAGCACCTCGAGGGCTTCCTTaGACTTCTTCTCCTTGGCTTCGATTTCTGCAATTGTTGCCTGGC +
Preference number: 5 (lower is better)
Translates to: LPAPPVLSAAPRGLP*TSSPWLRFLQLLPG
Trigger: GCCAGGCAACAATTGCAGAAATCGAAGCCAAGGAGAAGAAGTTCAAGGAAGCCCTCGAGGTGCTGCAGAAAGAACAGGAGGTGCTGGCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS TCA 90 bp CTGATCTCCATGAAAGACCCCGTCATCCAAGATCCCATCAGGAAATaGGACGTCTTGGCTGGGTGCTCGGAAGTGGAACACACTGCTGTG +
Preference number: 5 (lower is better)
Translates to: LISMKDPVIQDPIRK*DVLAGCSEVEHTAV
Trigger: CACAGCAGTGTGTTCCACTTCCGAGCACCCAGCCAAGACGTCTCATTTCCTGATGGGATCTTGGATGACGGGGTCTTTCATGGAGATCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS GCA 90 bp AACACTCATTGCCCTCTGTGCTCGGAAAGGTTCATTCAAGTAGTCTaGAGACAGGAAGTTCTTCTGTCCTGCAGCATCGAGTGCCGGGCC +
Preference number: 5 (lower is better)
Translates to: NTHCPLCSERFIQVV*RQEVLLSCSIECRA
Trigger: GGCCCGGCACTCGATGCTGCAGGACAGAAGAACTTCCTGTCTGCAGACTACTTGAATGAACCTTTCCGAGCACAGAGGGCAATGAGTGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS-3UTR CAA 90 bp TGCCATCTCTGGAGGGAAAGGGTCAGCACAGCAGAGAAAGACATTAGAACCCGCCTGGGCTTCTCACTCTaGTCCTTCTGTCCTCTTTGC +
Preference number: 5 (lower is better)
Translates to: CHLWRERVSTAEKDIRTRLGFSL*SFCPLC
Trigger: GCAAAGAGGACAGAAGGACAAGAGTGAGAAGCCCAG...GCGGGTTCTAATGTCTTTCTCTGCTGTGCTGACCCTTTCCCTCCAGAGATGGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CAA 90 bp CCAGTGACATGCATCGGTGAGGCTGTAGGTTGGTGCCATCTCTGGAGGGAAAGGTCGAAGAGCACCATCTaGAATTTCTTCCACTTGGGG +
Preference number: 5 (lower is better)
Translates to: PVTCIGEAVGWCHLWRERSKSTI*NFFHLG
Trigger: CCCCAAGTGGAAGAAATTCAAGATGGTGCTCTTCGA...CCTTTCCCTCCAGAGATGGCACCAACCTACAGCCTCACCGATGCATGTCACTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CAA 90 bp TGCCTGAGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTTCTGACAAGCTGCCCTTCTaGGATGTGCTCAGCTCCAGC +
Preference number: 5 (lower is better)
Translates to: CLRPPEMSLPCVSGSSGSDKLPF*DVLSSS
Trigger: GCTGGAGCTGAGCACATCCAAGAAGGGCAGCTTGTC...AGAACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CAA 90 bp CAAGATTGCCTGAGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTCAGGACTTGGCCAGCTaGAAGACCCGAAGCAAGCGG +
Preference number: 5 (lower is better)
Translates to: QDCLRPPEMSLPCVSGSSQDLAS*KTRSKR
Trigger: CCGCTTGCTTCGGGTCTTCAAGCTGGCCAAGTCCTG...AGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCAATCTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CAA 90 bp GGCTGTAGGTTGGTGCCATCTCTGGAGGGAAAGGGTCAGCACAGCAGAGAAAGATTCCCCACTGCAGCATaGACAGCATCAGTAGCAATG +
Preference number: 5 (lower is better)
Translates to: GCRLVPSLEGKGQHSRERFPTAA*TASVAM
Trigger: CATTGCTACTGATGCTGTCAATGCTGCAGTGGGGAA...TCTTTCTCTGCTGTGCTGACCCTTTCCCTCCAGAGATGGCACCAACCTACAGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CAA 90 bp GGCTGTAGGTTGGTGCCATCTCTGGAGGGAAAGGGTCAGCACAGCAGAGAAAGAGTGATCTTCACACTTTaGGACTTGCTGCAGCAGCTC +
Preference number: 5 (lower is better)
Translates to: GCRLVPSLEGKGQHSRERVIFTL*DLLQQL
Trigger: GAGCTGCTGCAGCAAGTCCAAAAGTGTGAAGATCAC...TCTTTCTCTGCTGTGCTGACCCTTTCCCTCCAGAGATGGCACCAACCTACAGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CAA 90 bp AGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTTCTGAGAAGGGCACATGCAGGGGGTaGGAGAGCATCAAGGAGCGT +
Preference number: 5 (lower is better)
Translates to: RPPEMSLPCVSGSSGSEKGTCRG*ESIKER
Trigger: ACGCTCCTTGATGCTCTCCAACCCCCTGCATGTGCC...CTTCTCAGAACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS CCA 90 bp TCGAGCCTTCTGACATCCTTGATTTCACCCTGGGTCTTCTCTCATTaGCGTTTTTGGGGGCTAAGGGTGATCCGTTGTGGGAATAGAGCG +
Preference number: 5 (lower is better)
Translates to: SSLLTSLISPWVFSH*RFWGLRVIRCGNRA
Trigger: CGCTCTATTCCCACAACGGATCACCCTTAGCCCCCAAAAACGCCAATGAGAGAAGACCCAGGGTGAAATCAAGGATGTCAGAAGGCTCGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS-3UTR CAA 90 bp TTTAAAAATATCAATTTTAATGGCCGACCCTCAGGTATTGTCCGGCAACTGCGATTAGGTCTGCCCTTCTaGGCGGCGCGGTGGGCAGCG +
Preference number: 5 (lower is better)
Translates to: FKNINFNGRPSGIVRQLRLGLPF*AARWAA
Trigger: CGCTGCCCACCGCGCCGCCAAGAAGGGCAGACCTAA...TCGCAGTTGCCGGACAATACCTGAGGGTCGGCCATTAAAATTGATATTTTTAAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CAA 90 bp CAAGATTGCCTGAGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTTTCTTGAGGTTCCCCTaGAAGAGCTGCAGGCCCACC +
Preference number: 5 (lower is better)
Translates to: QDCLRPPEMSLPCVSGSSFLRFP*KSCRPT
Trigger: GGTGGGCCTGCAGCTCTTCAAGGGGAACCTCAAGAA...AGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCAATCTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CAA 90 bp TGCCATCTCTGGAGGGAAAGGGTCAGCACAGCAGAGAAAGACATTAGAACCCGCAGCCTTCTGACATCCTaGATTTCACCCTGGGTCTTC +
Preference number: 5 (lower is better)
Translates to: CHLWRERVSTAEKDIRTRSLLTS*ISPWVF
Trigger: GAAGACCCAGGGTGAAATCAAGGATGTCAGAAGGCT...GCGGGTTCTAATGTCTTTCTCTGCTGTGCTGACCCTTTCCCTCCAGAGATGGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CAA 90 bp GATTGCCTGAGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTGAAGCAGTTTCCGATTaGTCTGGGAGCCCACCGTTG +
Preference number: 5 (lower is better)
Translates to: DCLRPPEMSLPCVSGSSGEAVSD*SGSPPL
Trigger: CAACGGTGGGCTCCCAGACAAATCGGAAACTGCTTC...ACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCAATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS GCA 90 bp CATGAAGACGGTATTCACCACAATGCACAGGGTGATGGTGAGCTCTaGGAAGGGGTCAGTCACCAGCTCGAAGAGCACCATCTTGAATTT +
Preference number: 5 (lower is better)
Translates to: HEDGIHHNAQGDGEL*EGVSHQLEEHHLEF
Trigger: AAATTCAAGATGGTGCTCTTCGAGCTGGTGACTGACCCCTTCGCAGAGCTCACCATCACCCTGTGCATTGTGGTGAATACCGTCTTCATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS CCA 90 bp CTGACATCCTTGATTTCACCCTGGGTCTTCTCTCATTGGCGTTTTTaGGGGCTAAGGGTGATCCGTTGTGGGAATAGAGCGAGGTTGTGT +
Preference number: 5 (lower is better)
Translates to: LTSLISPWVFSHWRF*GLRVIRCGNRARLC
Trigger: ACACAACCTCGCTCTATTCCCACAACGGATCACCCTTAGCCCCCAAAAACGCCAATGAGAGAAGACCCAGGGTGAAATCAAGGATGTCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS-3UTR CAA 90 bp GATTGCCTGAGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTCTGGGCTTCTCACTCTaGTCCTTCTGTCCTCTTTGC +
Preference number: 5 (lower is better)
Translates to: DCLRPPEMSLPCVSGSSGLGFSL*SFCPLC
Trigger: GCAAAGAGGACAGAAGGACAAGAGTGAGAAGCCCAG...ACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCAATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CAA 90 bp GATTGCCTGAGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTCCAGCATCAGATCCATaGCCACACAACAAGGGATCC +
Preference number: 5 (lower is better)
Translates to: DCLRPPEMSLPCVSGSSGPASDP*PHNKGS
Trigger: GGATCCCTTGTTGTGTGGCAATGGATCTGATGCTGG...ACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCAATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CAA 90 bp CTGAAAGTTCAGAAGAGATGTCAAAGTGGGGGAGTATTCTTGGCTTTTGATTCCAGGATGAAGGTCAGGTaGCCCAGGGCCCCCACAGAG +
Preference number: 5 (lower is better)
Translates to: LKVQKRCQSGGVFLAFDSRMKVR*PRAPTE
Trigger: CTCTGTGGGGGCCCTGGGCAACCTGACCTTCATCCT...GGAATCAAAAGCCAAGAATACTCCCCCACTTTGACATCTCTTCTGAACTTTCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CAA 90 bp GACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTTCTGAGAAGTTTGAGCACCACCAGGTaGCCTAGCACCATCACTGTC +
Preference number: 5 (lower is better)
Translates to: DHQKCPCHVSLEVLVLRSLSTTR*PSTITV
Trigger: GACAGTGATGGTGCTAGGCAACCTGGTGGTGCTCAA...ACTTCTCAGAACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CAA 90 bp CAAGATTGCCTGAGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTTTGAGCACCACCAGGTaGCCTAGCACCATCACTGTC +
Preference number: 5 (lower is better)
Translates to: QDCLRPPEMSLPCVSGSSLSTTR*PSTITV
Trigger: GACAGTGATGGTGCTAGGCAACCTGGTGGTGCTCAA...AGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCAATCTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CAA 90 bp TTTAAAAATATCAATTTTAATGGCCGACCCTCAGGTATTGTCCGGCAACTGCGATCCCCGTGGTTCTCCTaGGGGCCACCAAGAGCTGGC +
Preference number: 5 (lower is better)
Translates to: FKNINFNGRPSGIVRQLRSPWFS*GPPRAG
Trigger: GCCAGCTCTTGGTGGCCCCAAGGAGAACCACGGGGA...TCGCAGTTGCCGGACAATACCTGAGGGTCGGCCATTAAAATTGATATTTTTAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CAA 90 bp ATTGGGGTGGGGGCTTTCTCAAGGATATCCCTATTCAGCTCTGACACCATGACCGTGATCTTCACACTTTaGGACTTGCTGCAGCAGCTC +
Preference number: 5 (lower is better)
Translates to: IGVGAFSRISLFSSDTMTVIFTL*DLLQQL
Trigger: GAGCTGCTGCAGCAAGTCCAAAAGTGTGAAGATCAC...GGTCATGGTGTCAGAGCTGAATAGGGATATCCTTGAGAAAGCCCCCACCCCAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CAA 90 bp CAAGATTGCCTGAGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTCTTCCACAATTCCCCTaGGAGCCATTGCTGTTGGGC +
Preference number: 5 (lower is better)
Translates to: QDCLRPPEMSLPCVSGSSLPQFP*EPLLLG
Trigger: GCCCAACAGCAATGGCTCCAAGGGGAATTGTGGAAG...AGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCAATCTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS TCA 90 bp AGGGCTCTTCCCTTCCTTAGCAGTGACTTCATCTTCATTTTGCATTaGGCTAGATGTGCTAATGTTGGCCCTGTCACTCAGGCCCCTGGT +
Preference number: 5 (lower is better)
Translates to: RALPFLSSDFIFILH*ARCANVGPVTQAPG
Trigger: ACCAGGGGCCTGAGTGACAGGGCCAACATTAGCACATCTAGCTCAATGCAAAATGAAGATGAAGTCACTGCTAAGGAAGGGAAGAGCCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS-3UTR CAA 90 bp TGCCTGAGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTTCTGTTCTTCTGATCAGGTaGAAGGGACTGAAGAGCCAC +
Preference number: 5 (lower is better)
Translates to: CLRPPEMSLPCVSGSSGSVLLIR*KGLKSH
Trigger: GTGGCTCTTCAGTCCCTTCAACCTGATCAGAAGAAC...AGAACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS TCA 90 bp ATCCGTAGTACCGGGCTTGATGAAGATGTCTCCTGCCATTTCAGATaGGAGATTGTCAGCCTTGTGCGGATCTGTGCCGTTCTTAATGCA +
Preference number: 5 (lower is better)
Translates to: IRSTGLDEDVSCHFR*EIVSLVRICAVLNA
Trigger: TGCATTAAGAACGGCACAGATCCGCACAAGGCTGACAATCTCTCATCTGAAATGGCAGGAGACATCTTCATCAAGCCCGGTACTACGGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS-3UTR CAA 90 bp ATTGGGGTGGGGGCTTTCTCAAGGATATCCCTATTCAGCTCTGACACCATGACCGTCATGCACACACAGTaGACCAAAATAGTGACAGTG +
Preference number: 5 (lower is better)
Translates to: IGVGAFSRISLFSSDTMTVMHTQ*TKIVTV
Trigger: CACTGTCACTATTTTGGTCAACTGTGTGTGCATGAC...GGTCATGGTGTCAGAGCTGAATAGGGATATCCTTGAGAAAGCCCCCACCCCAAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CAA 90 bp GGCTGTAGGTTGGTGCCATCTCTGGAGGGAAAGGGTCAGCACAGCAGAGAAAGATTGAACTTCTTCTCCTaGGCTTCGATTTCTGCAATT +
Preference number: 5 (lower is better)
Translates to: GCRLVPSLEGKGQHSRERLNFFS*ASISAI
Trigger: AATTGCAGAAATCGAAGCCAAGGAGAAGAAGTTCAA...TCTTTCTCTGCTGTGCTGACCCTTTCCCTCCAGAGATGGCACCAACCTACAGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CAA 90 bp GCGATGTCATCTTCTGAAAGTTCAGAAGAGATGTCAAAGTGGGGGAGTATTCTTGACAATGTTGCCGGCTaGGAGCATGGCATCGAAGGC +
Preference number: 5 (lower is better)
Translates to: AMSSSESSEEMSKWGSILDNVAG*EHGIEG
Trigger: GCCTTCGATGCCATGCTCCAAGCCGGCAACATTGTC...AAGAATACTCCCCCACTTTGACATCTCTTCTGAACTTTCAGAAGATGACATCGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CAA 90 bp GCGATGTCATCTTCTGAAAGTTCAGAAGAGATGTCAAAGTGGGGGAGTATTCTTGACAAGCTGCCCTTCTaGGATGTGCTCAGCTCCAGC +
Preference number: 5 (lower is better)
Translates to: AMSSSESSEEMSKWGSILDKLPF*DVLSSS
Trigger: GCTGGAGCTGAGCACATCCAAGAAGGGCAGCTTGTC...AAGAATACTCCCCCACTTTGACATCTCTTCTGAACTTTCAGAAGATGACATCGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CAA 90 bp AGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTTCTGAGAAGTTCCCCACTGCAGCATaGACAGCATCAGTAGCAATG +
Preference number: 5 (lower is better)
Translates to: RPPEMSLPCVSGSSGSEKFPTAA*TASVAM
Trigger: CATTGCTACTGATGCTGTCAATGCTGCAGTGGGGAA...CTTCTCAGAACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CAA 90 bp TTTAAAAATATCAATTTTAATGGCCGACCCTCAGGTATTGTCCGGCAACTGCGAGGCACATGCAGGGGGTaGGAGAGCATCAAGGAGCGT +
Preference number: 5 (lower is better)
Translates to: FKNINFNGRPSGIVRQLRGTCRG*ESIKER
Trigger: ACGCTCCTTGATGCTCTCCAACCCCCTGCATGTGCC...TCGCAGTTGCCGGACAATACCTGAGGGTCGGCCATTAAAATTGATATTTTTAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CAA 90 bp GACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTTCTGAGAAGTTCTGGGAGCCCACCGTaGTCATTTGCCATGAATGTA +
Preference number: 5 (lower is better)
Translates to: DHQKCPCHVSLEVLVLRSSGSPP*SFAMNV
Trigger: TACATTCATGGCAAATGACAACGGTGGGCTCCCAGA...ACTTCTCAGAACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS CCA 90 bp ATAGGATGGTGGGAAAGACGTAGCAGAAGCAGTTTCCGATTTGTCTaGGAGCCCACCGTTGTCATTTGCCATGAATGTAACATAGCCTTC +
Preference number: 5 (lower is better)
Translates to: IGWWERRSRSSFRFV*EPTVVICHECNIAF
Trigger: GAAGGCTATGTTACATTCATGGCAAATGACAACGGTGGGCTCCCAGACAAATCGGAAACTGCTTCTGCTACGTCTTTCCCACCATCCTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS-3UTR CAA 90 bp GCGATGTCATCTTCTGAAAGTTCAGAAGAGATGTCAAAGTGGGGGAGTATTCTTGTGAACCGTCTGAAGTaGGTAGTTCCCACGGACCCA +
Preference number: 5 (lower is better)
Translates to: AMSSSESSEEMSKWGSILVNRLK*VVPTDP
Trigger: TGGGTCCGTGGGAACTACCAACTTCAGACGGTTCAC...AAGAATACTCCCCCACTTTGACATCTCTTCTGAACTTTCAGAAGATGACATCGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CAA 90 bp GAAGTTGGTAAATCACATCTCTGGTCACAAACAACACAAAGCGATGTCATCTTCGACAATGTTGCCGGCTaGGAGCATGGCATCGAAGGC +
Preference number: 5 (lower is better)
Translates to: EVGKSHLWSQTTQSDVIFDNVAG*EHGIEG
Trigger: GCCTTCGATGCCATGCTCCAAGCCGGCAACATTGTC...GAAGATGACATCGCTTTGTGTTGTTTGTGACCAGAGATGTGATTTACCAACTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CAA 90 bp GTCACAAACAACACAAAGCGATGTCATCTTCTGAAAGTTCAGAAGAGATGTCAACACCAAGAGCTGGCTTaGCCAGGTTCCCCACTGCAG +
Preference number: 5 (lower is better)
Translates to: VTNNTKRCHLLKVQKRCQHQELA*PGSPLQ
Trigger: CTGCAGTGGGGAACCTGGCAAAGCCAGCTCTTGGTG...TTGACATCTCTTCTGAACTTTCAGAAGATGACATCGCTTTGTGTTGTTTGTGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CAA 90 bp ATTGGGGTGGGGGCTTTCTCAAGGATATCCCTATTCAGCTCTGACACCATGACCGATGATGTCAAATGCTaGCCTGGTCACAATGTCAAA +
Preference number: 5 (lower is better)
Translates to: IGVGAFSRISLFSSDTMTDDVKC*PGHNVK
Trigger: TTTGACATTGTGACCAGGCAAGCATTTGACATCATC...GGTCATGGTGTCAGAGCTGAATAGGGATATCCTTGAGAAAGCCCCCACCCCAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS TCA 90 bp TTATCTCCGGGGACCAACGGCAGGTCCATCTGGATTAATATATTCTaGTTAGGTTTTGGGATTCTAAGAGGGCCAGAGAGTGTGTCTGCA +
Preference number: 5 (lower is better)
Translates to: LSPGTNGRSIWINIF*LGFGILRGPESVSA
Trigger: TGCAGACACACTCTCTGGCCCTCTTAGAATCCCAAAACCTAATCAGAATATATTAATCCAGATGGACCTGCCGTTGGTCCCCGGAGATAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS-3UTR CAA 90 bp GTCACAAACAACACAAAGCGATGTCATCTTCTGAAAGTTCAGAAGAGATGTCAATTCTTGAGGTTCCCCTaGAAGAGCTGCAGGCCCACC +
Preference number: 5 (lower is better)
Translates to: VTNNTKRCHLLKVQKRCQFLRFP*KSCRPT
Trigger: GGTGGGCCTGCAGCTCTTCAAGGGGAACCTCAAGAA...TTGACATCTCTTCTGAACTTTCAGAAGATGACATCGCTTTGTGTTGTTTGTGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CAA 90 bp GCGATGTCATCTTCTGAAAGTTCAGAAGAGATGTCAAAGTGGGGGAGTATTCTTCTGGGTCTTCTCTCATaGGCGTTTTTGGGGGCTAAG +
Preference number: 5 (lower is better)
Translates to: AMSSSESSEEMSKWGSILLGLLS*AFLGAK
Trigger: CTTAGCCCCCAAAAACGCCAATGAGAGAAGACCCAG...AAGAATACTCCCCCACTTTGACATCTCTTCTGAACTTTCAGAAGATGACATCGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CAA 90 bp GAAGTTGGTAAATCACATCTCTGGTCACAAACAACACAAAGCGATGTCATCTTCTTACTGGTGTTCACTTaGCAGCAGGGACAGCGGCGA +
Preference number: 5 (lower is better)
Translates to: EVGKSHLWSQTTQSDVIFLLVFT*QQGQRR
Trigger: TCGCCGCTGTCCCTGCTGCAAAGTGAACACCAGTAA...GAAGATGACATCGCTTTGTGTTGTTTGTGACCAGAGATGTGATTTACCAACTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CAA 90 bp GATTGCCTGAGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTTTGTCGAAGTTGACTTaGACGTTAACCCAGAAGAAG +
Preference number: 5 (lower is better)
Translates to: DCLRPPEMSLPCVSGSSGLSKLT*TLTQKK
Trigger: CTTCTTCTGGGTTAACGTCAAAGTCAACTTCGACAA...ACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCAATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CAA 90 bp GAAGTTGGTAAATCACATCTCTGGTCACAAACAACACAAAGCGATGTCATCTTCCTTCCACAATTCCCCTaGGAGCCATTGCTGTTGGGC +
Preference number: 5 (lower is better)
Translates to: EVGKSHLWSQTTQSDVIFLPQFP*EPLLLG
Trigger: GCCCAACAGCAATGGCTCCAAGGGGAATTGTGGAAG...GAAGATGACATCGCTTTGTGTTGTTTGTGACCAGAGATGTGATTTACCAACTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS GCA 90 bp TTCCAGCTCCTCAATGACAGAAGTCATAATACTGACAACACTCATTaGCCTCTGTGCTCGGAAAGGTTCATTCAAGTAGTCTGCAGACAG +
Preference number: 5 (lower is better)
Translates to: FQLLNDRSHNTDNTH*PLCSERFIQVVCRQ
Trigger: CTGTCTGCAGACTACTTGAATGAACCTTTCCGAGCACAGAGGGCAATGAGTGTTGTCAGTATTATGACTTCTGTCATTGAGGAGCTGGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS-3UTR CAA 90 bp CTGAAAGTTCAGAAGAGATGTCAAAGTGGGGGAGTATTCTTGGCTTTTGATTCCGTCCTTCTGTCCTCTTaGCTTAGGTCTGCCCTTCTT +
Preference number: 5 (lower is better)
Translates to: LKVQKRCQSGGVFLAFDSVLLSS*LRSALL
Trigger: AAGAAGGGCAGACCTAAGCAAAGAGGACAGAAGGAC...GGAATCAAAAGCCAAGAATACTCCCCCACTTTGACATCTCTTCTGAACTTTCAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CAA 90 bp CTGAAAGTTCAGAAGAGATGTCAAAGTGGGGGAGTATTCTTGGCTTTTGATTCCGAGTGGACGGACACTTaGATGGCTGTTCTTCTGATC +
Preference number: 5 (lower is better)
Translates to: LKVQKRCQSGGVFLAFDSEWTDT*MAVLLI
Trigger: GATCAGAAGAACAGCCATCAAAGTGTCCGTCCACTC...GGAATCAAAAGCCAAGAATACTCCCCCACTTTGACATCTCTTCTGAACTTTCAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CAA 90 bp TGCCTGAGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTTCTTTAATGCATTTATTCTaGAGGTTCCCCTTGAAGAGC +
Preference number: 5 (lower is better)
Translates to: CLRPPEMSLPCVSGSSGSLMHLF*RFPLKS
Trigger: GCTCTTCAAGGGGAACCTCAAGAATAAATGCATTAA...AGAACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CAA 90 bp GAAGTTGGTAAATCACATCTCTGGTCACAAACAACACAAAGCGATGTCATCTTCCTGGGTCTTCTCTCATaGGCGTTTTTGGGGGCTAAG +
Preference number: 5 (lower is better)
Translates to: EVGKSHLWSQTTQSDVIFLGLLS*AFLGAK
Trigger: CTTAGCCCCCAAAAACGCCAATGAGAGAAGACCCAG...GAAGATGACATCGCTTTGTGTTGTTTGTGACCAGAGATGTGATTTACCAACTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CAA 90 bp CAAGATTGCCTGAGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTTTGTCGAAGTTGACTTaGACGTTAACCCAGAAGAAG +
Preference number: 5 (lower is better)
Translates to: QDCLRPPEMSLPCVSGSSLSKLT*TLTQKK
Trigger: CTTCTTCTGGGTTAACGTCAAAGTCAACTTCGACAA...AGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCAATCTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CAA 90 bp CAAGATTGCCTGAGACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGATGATGTCAAATGCTaGCCTGGTCACAATGTCAAA +
Preference number: 5 (lower is better)
Translates to: QDCLRPPEMSLPCVSGSSDDVKC*PGHNVK
Trigger: TTTGACATTGTGACCAGGCAAGCATTTGACATCATC...AGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTCTCAGGCAATCTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CAA 90 bp TTTAAAAATATCAATTTTAATGGCCGACCCTCAGGTATTGTCCGGCAACTGCGATGCACCGGAGGGTGGTaGCTATTGGTTCATAGGATG +
Preference number: 5 (lower is better)
Translates to: FKNINFNGRPSGIVRQLRCTGGW*LLVHRM
Trigger: CATCCTATGAACCAATAGCAACCACCCTCCGGTGCA...TCGCAGTTGCCGGACAATACCTGAGGGTCGGCCATTAAAATTGATATTTTTAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CAA 90 bp CACAAACAACACAAAGCGATGTCATCTTCTGAAAGTTCAGAAGAGATGTCAAAGTTCACACTTTTGGACTaGCTGCAGCAGCTCCTGCCC +
Preference number: 5 (lower is better)
Translates to: HKQHKAMSSSESSEEMSKFTLLD*LQQLLP
Trigger: GGGCAGGAGCTGCTGCAGCAAGTCCAAAAGTGTGAA...CTTTGACATCTCTTCTGAACTTTCAGAAGATGACATCGCTTTGTGTTGTTTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213392.2
CDS-3UTR CAA 90 bp TTTAAAAATATCAATTTTAATGGCCGACCCTCAGGTATTGTCCGGCAACTGCGAGTTCTTCTGATCAGGTaGAAGGGACTGAAGAGCCAC +
Preference number: 5 (lower is better)
Translates to: FKNINFNGRPSGIVRQLRVLLIR*KGLKSH
Trigger: GTGGCTCTTCAGTCCCTTCAACCTGATCAGAAGAAC...TCGCAGTTGCCGGACAATACCTGAGGGTCGGCCATTAAAATTGATATTTTTAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CAA 90 bp TTTAAAAATATCAATTTTAATGGCCGACCCTCAGGTATTGTCCGGCAACTGCGAGAGTGGACGGACACTTaGATGGCTGTTCTTCTGATC +
Preference number: 5 (lower is better)
Translates to: FKNINFNGRPSGIVRQLREWTDT*MAVLLI
Trigger: GATCAGAAGAACAGCCATCAAAGTGTCCGTCCACTC...TCGCAGTTGCCGGACAATACCTGAGGGTCGGCCATTAAAATTGATATTTTTAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CAA 90 bp GACCACCAGAAATGTCCTTGCCATGTGTCTCTGGAAGTTCTGGTTCTGAGAAGTTTAATGCATTTATTCTaGAGGTTCCCCTTGAAGAGC +
Preference number: 5 (lower is better)
Translates to: DHQKCPCHVSLEVLVLRSLMHLF*RFPLKS
Trigger: GCTCTTCAAGGGGAACCTCAAGAATAAATGCATTAA...ACTTCTCAGAACCAGAACTTCCAGAGACACATGGCAAGGACATTTCTGGTGGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CAA 90 bp CACAAACAACACAAAGCGATGTCATCTTCTGAAAGTTCAGAAGAGATGTCAAAGCCAGCATCAGATCCATaGCCACACAACAAGGGATCC +
Preference number: 5 (lower is better)
Translates to: HKQHKAMSSSESSEEMSKPASDP*PHNKGS
Trigger: GGATCCCTTGTTGTGTGGCAATGGATCTGATGCTGG...CTTTGACATCTCTTCTGAACTTTCAGAAGATGACATCGCTTTGTGTTGTTTGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS GCA 90 bp CTCAATGACAGAAGTCATAATACTGACAACACTCATTGCCCTCTGTaGTCGGAAAGGTTCATTCAAGTAGTCTGCAGACAGGAAGTTCTT +
Preference number: 5 (lower is better)
Translates to: LNDRSHNTDNTHCPL*SERFIQVVCRQEVL
Trigger: AAGAACTTCCTGTCTGCAGACTACTTGAATGAACCTTTCCGAGCACAGAGGGCAATGAGTGTTGTCAGTATTATGACTTCTGTCATTGAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS-3UTR CAA 90 bp TTTAAAAATATCAATTTTAATGGCCGACCCTCAGGTATTGTCCGGCAACTGCGACGATTTCTGCAATTGTaGCCTGGCTCTGTTCCTCAT +
Preference number: 5 (lower is better)
Translates to: FKNINFNGRPSGIVRQLRRFLQL*PGSVPH
Trigger: ATGAGGAACAGAGCCAGGCAACAATTGCAGAAATCG...TCGCAGTTGCCGGACAATACCTGAGGGTCGGCCATTAAAATTGATATTTTTAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CAA 90 bp TTTAAAAATATCAATTTTAATGGCCGACCCTCAGGTATTGTCCGGCAACTGCGAGTCATGCACACACAGTaGACCAAAATAGTGACAGTG +
Preference number: 5 (lower is better)
Translates to: FKNINFNGRPSGIVRQLRVMHTQ*TKIVTV
Trigger: CACTGTCACTATTTTGGTCAACTGTGTGTGCATGAC...TCGCAGTTGCCGGACAATACCTGAGGGTCGGCCATTAAAATTGATATTTTTAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CAA 90 bp CACAAACAACACAAAGCGATGTCATCTTCTGAAAGTTCAGAAGAGATGTCAAAGCGATTTCTGCAATTGTaGCCTGGCTCTGTTCCTCAT +
Preference number: 5 (lower is better)
Translates to: HKQHKAMSSSESSEEMSKRFLQL*PGSVPH
Trigger: ATGAGGAACAGAGCCAGGCAACAATTGCAGAAATCG...CTTTGACATCTCTTCTGAACTTTCAGAAGATGACATCGCTTTGTGTTGTTTGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CAA 90 bp ACAAACAACACAAAGCGATGTCATCTTCTGAAAGTTCAGAAGAGATGTCAAAGTAGCCTTCTGACATCCTaGATTTCACCCTGGGTCTTC +
Preference number: 5 (lower is better)
Translates to: TNNTKRCHLLKVQKRCQSSLLTS*ISPWVF
Trigger: GAAGACCCAGGGTGAAATCAAGGATGTCAGAAGGCT...ACTTTGACATCTCTTCTGAACTTTCAGAAGATGACATCGCTTTGTGTTGTTTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CAA 90 bp GTCACAAACAACACAAAGCGATGTCATCTTCTGAAAGTTCAGAAGAGATGTCAATCGAAGAGCACCATCTaGAATTTCTTCCACTTGGGG +
Preference number: 5 (lower is better)
Translates to: VTNNTKRCHLLKVQKRCQSKSTI*NFFHLG
Trigger: CCCCAAGTGGAAGAAATTCAAGATGGTGCTCTTCGA...TTGACATCTCTTCTGAACTTTCAGAAGATGACATCGCTTTGTGTTGTTTGTGAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CAA 90 bp GCGATGTCATCTTCTGAAAGTTCAGAAGAGATGTCAAAGTGGGGGAGTATTCTTGTGGCCAGTATTGTTTaGATTGTAACAGTCAGACTT +
Preference number: 5 (lower is better)
Translates to: AMSSSESSEEMSKWGSILVASIV*IVTVRL
Trigger: AAGTCTGACTGTTACAATCAAAACAATACTGGCCAC...AAGAATACTCCCCCACTTTGACATCTCTTCTGAACTTTCAGAAGATGACATCGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CAA 90 bp TTTAAAAATATCAATTTTAATGGCCGACCCTCAGGTATTGTCCGGCAACTGCGAGTGGCCAGTATTGTTTaGATTGTAACAGTCAGACTT +
Preference number: 5 (lower is better)
Translates to: FKNINFNGRPSGIVRQLRVASIV*IVTVRL
Trigger: AAGTCTGACTGTTACAATCAAAACAATACTGGCCAC...TCGCAGTTGCCGGACAATACCTGAGGGTCGGCCATTAAAATTGATATTTTTAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS-3UTR CAA 90 bp ACAAACAACACAAAGCGATGTCATCTTCTGAAAGTTCAGAAGAGATGTCAAAGTTTGAACTTCTTCTCCTaGGCTTCGATTTCTGCAATT +
Preference number: 5 (lower is better)
Translates to: TNNTKRCHLLKVQKRCQSLNFFS*ASISAI
Trigger: AATTGCAGAAATCGAAGCCAAGGAGAAGAAGTTCAA...ACTTTGACATCTCTTCTGAACTTTCAGAAGATGACATCGCTTTGTGTTGTTTGT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
CDS CCA 72 bp CTCCGCCAGCTCAGGGATCTTCCTCAGGATCTCCTCTaGGTCCGGGCAGTCCACCGTGCTGCCCTCGGAGGA +
Preference number: 6 (lower is better)
Translates to: LRQLRDLPQDLL*VRAVHRAALGG
Trigger: TCCTCCGAGGGCAGCACGGTGGACTGCCCGGACCCAGAGGAGATCCTGAGGAAGATCCCTGAGCTGGCGGAG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS GCA 72 bp TCAGGATCTCCTCTGGGTCCGGGCAGTCCACCGTGCTaGCCTCGGAGGAGCTTGTGTCATCCACTCCCTCGG +
Preference number: 6 (lower is better)
Translates to: SGSPLGPGSPPC*PRRSLCHPLPR
Trigger: CCGAGGGAGTGGATGACACAAGCTCCTCCGAGGGCAGCACGGTGGACTGCCCGGACCCAGAGGAGATCCTGA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS GCA 72 bp TCCTCAGGATCTCCTCTGGGTCCGGGCAGTCCACCGTaGTGCCCTCGGAGGAGCTTGTGTCATCCACTCCCT +
Preference number: 6 (lower is better)
Translates to: SSGSPLGPGSPP*CPRRSLCHPLP
Trigger: AGGGAGTGGATGACACAAGCTCCTCCGAGGGCAGCACGGTGGACTGCCCGGACCCAGAGGAGATCCTGAGGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS CCA 72 bp CACTTTGCAGCAGGGACAGCGGCGAGTGCAGCCTTCTaGGAAACAGTCATCGGGCTCGTCCAGCTCCTCCGC +
Preference number: 6 (lower is better)
Translates to: HFAAGTAASAAF*ETVIGLVQLLR
Trigger: GCGGAGGAGCTGGACGAGCCCGATGACTGTTTCCCAGAAGGCTGCACTCGCCGCTGTCCCTGCTGCAAAGTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS CAA 90 bp GACAGAGCCCGCAGCGGCCGGAGGGCACGGAGAGTCCGAAGGGCTTaGATGGACGCCACGTCTGAATACTCGAGGATCTTGGCTATGAGG +
Preference number: 6 (lower is better)
Translates to: DRARSGRRARRVRRA*MDATSEYSRILAMR
Trigger: CCTCATAGCCAAGATCCTCGAGTATTCAGACGTGGCGTCCATCAAAGCCCTTCGGACTCTCCGTGCCCTCCGGCCGCTGCGGGCTCTGTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS TCA 72 bp GCAGCGGCCGGAGGGCACGGAGAGTCCGAAGGGCTTTaGTGGACGCCACGTCTGAATACTCGAGGATCTTGG +
Preference number: 6 (lower is better)
Translates to: AAAGGHGESEGL*WTPRLNTRGSW
Trigger: CCAAGATCCTCGAGTATTCAGACGTGGCGTCCATCAAAGCCCTTCGGACTCTCCGTGCCCTCCGGCCGCTGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS GCA 72 bp GACTCCTGGGGAGAGGACCTGCCTGCCCGGCACCCCTaGCCAGCAATATGGAACTTCGACGGCTTTCCTGAT +
Preference number: 6 (lower is better)
Translates to: DSWGEDLPARHP*PAIWNFDGFPD
Trigger: ATCAGGAAAGCCGTCGAAGTTCCATATTGCTGGGCAGGGGTGCCGGGCAGGCAGGTCCTCTCCCCAGGAGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS CAA 90 bp GGAGGGTGGGCTTCGGGCTGCCTGGTGATCTTCACACTTTTGGACTaGCTGCAGCAGCTCCTGCCCTTTGGGGCTCTCTTCCTGCCAGGA +
Preference number: 6 (lower is better)
Translates to: GGWASGCLVIFTLLD*LQQLLPFGALFLPG
Trigger: TCCTGGCAGGAAGAGAGCCCCAAAGGGCAGGAGCTGCTGCAGCAAGTCCAAAAGTGTGAAGATCACCAGGCAGCCCGAAGCCCACCCTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000213392.2
CDS CAA 90 bp CATCCCGGAGGGTGGGCTTCGGGCTGCCTGGTGATCTTCACACTTTaGGACTTGCTGCAGCAGCTCCTGCCCTTTGGGGCTCTCTTCCTG +
Preference number: 6 (lower is better)
Translates to: HPGGWASGCLVIFTL*DLLQQLLPFGALFL
Trigger: CAGGAAGAGAGCCCCAAAGGGCAGGAGCTGCTGCAGCAAGTCCAAAAGTGTGAAGATCACCAGGCAGCCCGAAGCCCACCCTCCGGGATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213392.2
CDS TCA 72 bp GAGGACATCCCGGAGGGTGGGCTTCGGGCTGCCTGGTaGTCTTCACACTTTTGGACTTGCTGCAGCAGCTCC +
Preference number: 6 (lower is better)
Translates to: EDIPEGGLRAAW*SSHFWTCCSSS
Trigger: GGAGCTGCTGCAGCAAGTCCAAAAGTGTGAAGATCACCAGGCAGCCCGAAGCCCACCCTCCGGGATGTCCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS GCA 72 bp GGCCTGGGCTTCTCACTCTTGTCCTTCTGTCCTCTTTaGTTAGGTCTGCCCTTCTTGGCGGCGCGGTGGGCA +
Preference number: 6 (lower is better)
Translates to: GLGFSLLSFCPL*LGLPFLAARWA
Trigger: TGCCCACCGCGCCGCCAAGAAGGGCAGACCTAAGCAAAGAGGACAGAAGGACAAGAGTGAGAAGCCCAGGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS CCA 72 bp CCCCGACCAGCTCTGCTGGGAGCTCGCCATAGAACCTaGGCAGCTGGTTACAGGCCTTCAAGTCCAACTGAG +
Preference number: 6 (lower is better)
Translates to: PRPALLGARHRT*AAGYRPSSPTE
Trigger: CTCAGTTGGACTTGAAGGCCTGTAACCAGCTGCCCAGGTTCTATGGCGAGCTCCCAGCAGAGCTGGTCGGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS CAA 72 bp AGGCCTGGGCTTCTCACTCTTGTCCTTCTGTCCTCTTaGCTTAGGTCTGCCCTTCTTGGCGGCGCGGTGGGC +
Preference number: 6 (lower is better)
Translates to: RPGLLTLVLLSS*LRSALLGGAVG
Trigger: GCCCACCGCGCCGCCAAGAAGGGCAGACCTAAGCAAAGAGGACAGAAGGACAAGAGTGAGAAGCCCAGGCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS CAA 90 bp GTCCAACTGAGGCCTGGGCTTCTCACTCTTGTCCTTCTGTCCTCTTaGCTTAGGTCTGCCCTTCTTGGCGGCGCGGTGGGCAGCGATCTG +
Preference number: 6 (lower is better)
Translates to: VQLRPGLLTLVLLSS*LRSALLGGAVGSDL
Trigger: CAGATCGCTGCCCACCGCGCCGCCAAGAAGGGCAGACCTAAGCAAAGAGGACAGAAGGACAAGAGTGAGAAGCCCAGGCCTCAGTTGGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS GCA 72 bp CCCGTGGTTCTCCTTGGGGCCACCAAGAGCTGGCTTTaGCAGGTTCCCCACTGCAGCATTGACAGCATCAGT +
Preference number: 6 (lower is better)
Translates to: PVVLLGATKSWL*QVPHCSIDSIS
Trigger: ACTGATGCTGTCAATGCTGCAGTGGGGAACCTGGCAAAGCCAGCTCTTGGTGGCCCCAAGGAGAACCACGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS GCA 72 bp GTCCTCAGAGGACATCCCGGAGGGTGGGCTTCGGGCTaGCTGGTGATCTTCACACTTTTGGACTTGCTGCAG +
Preference number: 6 (lower is better)
Translates to: VLRGHPGGWASG*LVIFTLLDLLQ
Trigger: CTGCAGCAAGTCCAAAAGTGTGAAGATCACCAGGCAGCCCGAAGCCCACCCTCCGGGATGTCCTCTGAGGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS GCA 72 bp AGCCCGTGGCCCAAGGAAACTTACTGGTGTTCACTTTaGAGCAGGGACAGCGGCGAGTGCAGCCTTCTGGGA +
Preference number: 6 (lower is better)
Translates to: SPWPKETYWCSL*SRDSGECSLLG
Trigger: TCCCAGAAGGCTGCACTCGCCGCTGTCCCTGCTGCAAAGTGAACACCAGTAAGTTTCCTTGGGCCACGGGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS CAA 90 bp TTCTCACTCTTGTCCTTCTGTCCTCTTTGCTTAGGTCTGCCCTTCTaGGCGGCGCGGTGGGCAGCGATCTGCTTCTCGATCTCTGCCAGC +
Preference number: 6 (lower is better)
Translates to: FSLLSFCPLCLGLPF*AARWAAICFSISAS
Trigger: GCTGGCAGAGATCGAGAAGCAGATCGCTGCCCACCGCGCCGCCAAGAAGGGCAGACCTAAGCAAAGAGGACAGAAGGACAAGAGTGAGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS TCA 72 bp CTTCAGGGCCCTGAGAACTCGGAATGTCCGCAGGCCTaGGATTCCTCGGAGGTCTATCGCTGCACCCACATA +
Preference number: 6 (lower is better)
Translates to: LQGPENSECPQA*DSSEVYRCTHI
Trigger: TATGTGGGTGCAGCGATAGACCTCCGAGGAATCTCAGGCCTGCGGACATTCCGAGTTCTCAGGGCCCTGAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS TCA 72 bp CTGGTAATGGCCCGACTGGCCCGATGGCCAAATACCTaGATCCGGGCCAGTGCTACCTGCAAGTTGTTCACC +
Preference number: 6 (lower is better)
Translates to: LVMARLARWPNT*IRASATCKLFT
Trigger: GGTGAACAACTTGCAGGTAGCACTGGCCCGGATTCAGGTATTTGGCCATCGGGCCAGTCGGGCCATTACCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS GCA 72 bp GTGGGAATAGAGCGAGGTTGTGTCAATGCCCAGCGCTaGCAGCACCTCCTGTTCTTTCTGCAGCACCTCGAG +
Preference number: 6 (lower is better)
Translates to: VGIERGCVNAQR*QHLLFFLQHLE
Trigger: CTCGAGGTGCTGCAGAAAGAACAGGAGGTGCTGGCAGCGCTGGGCATTGACACAACCTCGCTCTATTCCCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS GCA 72 bp ACTGGCCCGATGGCCAAATACCTGAATCCGGGCCAGTaGTACCTGCAAGTTGTTCACCTCCCCGTCATCCTC +
Preference number: 6 (lower is better)
Translates to: TGPMAKYLNPGQ*YLQVVHLPVIL
Trigger: GAGGATGACGGGGAGGTGAACAACTTGCAGGTAGCACTGGCCCGGATTCAGGTATTTGGCCATCGGGCCAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS GCA 72 bp TACTGGTGTTCACTTTGCAGCAGGGACAGCGGCGAGTaGAGCCTTCTGGGAAACAGTCATCGGGCTCGTCCA +
Preference number: 6 (lower is better)
Translates to: YWCSLCSRDSGE*SLLGNSHRARP
Trigger: TGGACGAGCCCGATGACTGTTTCCCAGAAGGCTGCACTCGCCGCTGTCCCTGCTGCAAAGTGAACACCAGTA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS CCA 72 bp TCTTGGCTGGGTGCTCGGAAGTGGAACACACTGCTGTaGCTAGCCCTGCGTCTTCCAGAAGAAAGGCCTAGG +
Preference number: 6 (lower is better)
Translates to: SWLGARKWNTLL*LALRLPEERPR
Trigger: CCTAGGCCTTTCTTCTGGAAGACGCAGGGCTAGCCACAGCAGTGTGTTCCACTTCCGAGCACCCAGCCAAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS CCA 72 bp GAGGACCTGCCTGCCCGGCACCCCTGCCCAGCAATATaGAACTTCGACGGCTTTCCTGATCTCCATGAAAGA +
Preference number: 6 (lower is better)
Translates to: EDLPARHPCPAI*NFDGFPDLHER
Trigger: TCTTTCATGGAGATCAGGAAAGCCGTCGAAGTTCCATATTGCTGGGCAGGGGTGCCGGGCAGGCAGGTCCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS CCA 72 bp GAGACCCACACGTTAGGATCAGTGATGAAGTCCCCGTaGTTCTCCTTGGGGCCACCAAGAGCTGGCTTTGCC +
Preference number: 6 (lower is better)
Translates to: ETHTLGSVMKSP*FSLGPPRAGFA
Trigger: GGCAAAGCCAGCTCTTGGTGGCCCCAAGGAGAACCACGGGGACTTCATCACTGATCCTAACGTGTGGGTCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS CAA 72 bp GGGCTAAGGGTGATCCGTTGTGGGAATAGAGCGAGGTaGTGTCAATGCCCAGCGCTGCCAGCACCTCCTGTT +
Preference number: 6 (lower is better)
Translates to: GLRVIRCGNRAR*CQCPALPAPPV
Trigger: AACAGGAGGTGCTGGCAGCGCTGGGCATTGACACAACCTCGCTCTATTCCCACAACGGATCACCCTTAGCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS CAA 72 bp ACGTTAGGATCAGTGATGAAGTCCCCGTGGTTCTCCTaGGGGCCACCAAGAGCTGGCTTTGCCAGGTTCCCC +
Preference number: 6 (lower is better)
Translates to: TLGSVMKSPWFS*GPPRAGFARFP
Trigger: GGGGAACCTGGCAAAGCCAGCTCTTGGTGGCCCCAAGGAGAACCACGGGGACTTCATCACTGATCCTAACGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS CAA 72 bp ACACACTCGCCCGTGAAGACGGCCACGAAGAACTGGTaGATTCTGCCCAGGACCTTCGTCTTCTCCTCGCTC +
Preference number: 6 (lower is better)
Translates to: THSPVKTATKNW*ILPRTFVFSSL
Trigger: GAGCGAGGAGAAGACGAAGGTCCTGGGCAGAATCAACCAGTTCTTCGTGGCCGTCTTCACGGGCGAGTGTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS TCA 72 bp CACGGAGATGCCATCCCTGCGGCACCCATAGTTCTCTaGGAGGAGCTGCTTTCCCACCAGGGCGAAGATAAA +
Preference number: 6 (lower is better)
Translates to: HGDAIPAAPIVL*EELLSHQGEDK
Trigger: TTTATCTTCGCCCTGGTGGGAAAGCAGCTCCTCTCAGAGAACTATGGGTGCCGCAGGGATGGCATCTCCGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS TCA 72 bp TGCTGCCCTTTGGGGCTCTCTTCCTGCCAGGAGCTCTaGGAAGCATGCTCCACATCTTCCTCGAGCTCATCA +
Preference number: 6 (lower is better)
Translates to: CCPLGLSSCQEL*EACSTSSSSSS
Trigger: TGATGAGCTCGAGGAAGATGTGGAGCATGCTTCTCAGAGCTCCTGGCAGGAAGAGAGCCCCAAAGGGCAGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084787.6
ENSMUST00000214408.2
CDS TCA 72 bp TCCTGCCCTTTGGGGCTCTCTTCCTGCCAGGAGCTCTaGGAAGCATGCTCCACATCTTCCTCGAGCTCATCA +
Preference number: 6 (lower is better)
Translates to: SCPLGLSSCQEL*EACSTSSSSSS
Trigger: TGATGAGCTCGAGGAAGATGTGGAGCATGCTTCTCAGAGCTCCTGGCAGGAAGAGAGCCCCAAAGGGCAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213392.2
CDS GCA 72 bp AAGACCATGTACATTTTCCCGGAAGCCCGGAGTGTCTaGTGGTACAGCCGTTCCCAGGAGTCCTGCGTCATG +
Preference number: 6 (lower is better)
Translates to: KTMYIFPEARSV*WYSRSQESCVM
Trigger: CATGACGCAGGACTCCTGGGAACGGCTGTACCAGCAGACACTCCGGGCTTCCGGGAAAATGTACATGGTCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS GCA 72 bp TCAATGCCCAGCGCTGCCAGCACCTCCTGTTCTTTCTaGAGCACCTCGAGGGCTTCCTTGAACTTCTTCTCC +
Preference number: 6 (lower is better)
Translates to: SMPSAASTSCSF*STSRASLNFFS
Trigger: GGAGAAGAAGTTCAAGGAAGCCCTCGAGGTGCTGCAGAAAGAACAGGAGGTGCTGGCAGCGCTGGGCATTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS GCA 72 bp GGGGCCACCAAGAGCTGGCTTTGCCAGGTTCCCCACTaGAGCATTGACAGCATCAGTAGCAATGTGGTTCTC +
Preference number: 6 (lower is better)
Translates to: GATKSWLCQVPH*SIDSISSNVVL
Trigger: GAGAACCACATTGCTACTGATGCTGTCAATGCTGCAGTGGGGAACCTGGCAAAGCCAGCTCTTGGTGGCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS CCA 72 bp TCAGGAAATGAGACGTCTTGGCTGGGTGCTCGGAAGTaGAACACACTGCTGTGGCTAGCCCTGCGTCTTCCA +
Preference number: 6 (lower is better)
Translates to: SGNETSWLGARK*NTLLWLALRLP
Trigger: TGGAAGACGCAGGGCTAGCCACAGCAGTGTGTTCCACTTCCGAGCACCCAGCCAAGACGTCTCATTTCCTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS CCA 72 bp ATCACACACTCGCCCGTGAAGACGGCCACGAAGAACTaGTTGATTCTGCCCAGGACCTTCGTCTTCTCCTCG +
Preference number: 6 (lower is better)
Translates to: ITHSPVKTATKN*LILPRTFVFSS
Trigger: CGAGGAGAAGACGAAGGTCCTGGGCAGAATCAACCAGTTCTTCGTGGCCGTCTTCACGGGCGAGTGTGTGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS CAA 90 bp CGTTTTTGGGGGCTAAGGGTGATCCGTTGTGGGAATAGAGCGAGGTaGTGTCAATGCCCAGCGCTGCCAGCACCTCCTGTTCTTTCTGCA +
Preference number: 6 (lower is better)
Translates to: RFWGLRVIRCGNRAR*CQCPALPAPPVLSA
Trigger: TGCAGAAAGAACAGGAGGTGCTGGCAGCGCTGGGCATTGACACAACCTCGCTCTATTCCCACAACGGATCACCCTTAGCCCCCAAAAACG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS CAA 90 bp TTGGGGCCACCAAGAGCTGGCTTTGCCAGGTTCCCCACTGCAGCATaGACAGCATCAGTAGCAATGTGGTTCTCAGCTTTGCAGCTGGTG +
Preference number: 6 (lower is better)
Translates to: LGPPRAGFARFPTAA*TASVAMWFSALQLV
Trigger: CACCAGCTGCAAAGCTGAGAACCACATTGCTACTGATGCTGTCAATGCTGCAGTGGGGAACCTGGCAAAGCCAGCTCTTGGTGGCCCCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS TCA 72 bp ATTTGCCATGAATGTAACATAGCCTTCCCTGGGGAGTaGCACGCCATCCTCCTCAGCCCTGGGCACATGCAG +
Preference number: 6 (lower is better)
Translates to: ICHECNIAFPGE*HAILLSPGHMQ
Trigger: CTGCATGTGCCCAGGGCTGAGGAGGATGGCGTGTCACTCCCCAGGGAAGGCTATGTTACATTCATGGCAAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS GCA 72 bp ATTCAAGTAGTCTGCAGACAGGAAGTTCTTCTGTCCTaGAGCATCGAGTGCCGGGCCTTCAGGCGCTCCAGT +
Preference number: 6 (lower is better)
Translates to: IQVVCRQEVLLS*SIECRAFRRSS
Trigger: ACTGGAGCGCCTGAAGGCCCGGCACTCGATGCTGCAGGACAGAAGAACTTCCTGTCTGCAGACTACTTGAAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS GCA 72 bp GGTATTCACCACAATGCACAGGGTGATGGTGAGCTCTaGGAAGGGGTCAGTCACCAGCTCGAAGAGCACCAT +
Preference number: 6 (lower is better)
Translates to: GIHHNAQGDGEL*EGVSHQLEEHH
Trigger: ATGGTGCTCTTCGAGCTGGTGACTGACCCCTTCGCAGAGCTCACCATCACCCTGTGCATTGTGGTGAATACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS CCA 72 bp CAATGCGGTAACAGGTTTTGCGCACCTGCCAGCCCGTaGCCCAAGGAAACTTACTGGTGTTCACTTTGCAGC +
Preference number: 6 (lower is better)
Translates to: QCGNRFCAPASP*PKETYWCSLCS
Trigger: GCTGCAAAGTGAACACCAGTAAGTTTCCTTGGGCCACGGGCTGGCAGGTGCGCAAAACCTGTTACCGCATTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS TCA 72 bp ACGGAGAGTCCGAAGGGCTTTGATGGACGCCACGTCTaGATACTCGAGGATCTTGGCTATGAGGCTTGTGAG +
Preference number: 6 (lower is better)
Translates to: TESPKGFDGRHV*ILEDLGYEACE
Trigger: CTCACAAGCCTCATAGCCAAGATCCTCGAGTATTCAGACGTGGCGTCCATCAAAGCCCTTCGGACTCTCCGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS CCA 72 bp GCAGCTGGTTACAGGCCTTCAAGTCCAACTGAGGCCTaGGCTTCTCACTCTTGTCCTTCTGTCCTCTTTGCT +
Preference number: 6 (lower is better)
Translates to: AAGYRPSSPTEA*ASHSCPSVLFA
Trigger: AGCAAAGAGGACAGAAGGACAAGAGTGAGAAGCCCAGGCCTCAGTTGGACTTGAAGGCCTGTAACCAGCTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS CCA 72 bp GTCACTCAGGCCCCTGGTGACGCTGTCATAGGATGGTaGGAAAGACGTAGCAGAAGCAGTTTCCGATTTGTC +
Preference number: 6 (lower is better)
Translates to: VTQAPGDAVIGW*ERRSRSSFRFV
Trigger: GACAAATCGGAAACTGCTTCTGCTACGTCTTTCCCACCATCCTATGACAGCGTCACCAGGGGCCTGAGTGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS CCA 72 bp CCTGTCACTCAGGCCCCTGGTGACGCTGTCATAGGATaGTGGGAAAGACGTAGCAGAAGCAGTTTCCGATTT +
Preference number: 6 (lower is better)
Translates to: PVTQAPGDAVIG*WERRSRSSFRF
Trigger: AAATCGGAAACTGCTTCTGCTACGTCTTTCCCACCATCCTATGACAGCGTCACCAGGGGCCTGAGTGACAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS CAA 72 bp GCGAAGGGGTCAGTCACCAGCTCGAAGAGCACCATCTaGAATTTCTTCCACTTGGGGCAGCACTCCCATATC +
Preference number: 6 (lower is better)
Translates to: AKGSVTSSKSTI*NFFHLGQHSHI
Trigger: GATATGGGAGTGCTGCCCCAAGTGGAAGAAATTCAAGATGGTGCTCTTCGAGCTGGTGACTGACCCCTTCGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS CCA 72 bp TTCCCCACTGCAGCATTGACAGCATCAGTAGCAATGTaGTTCTCAGCTTTGCAGCTGGTGAGTGGGGGTTTC +
Preference number: 6 (lower is better)
Translates to: FPTAALTASVAM*FSALQLVSGGF
Trigger: GAAACCCCCACTCACCAGCTGCAAAGCTGAGAACCACATTGCTACTGATGCTGTCAATGCTGCAGTGGGGAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS CAA 72 bp CCAAGAGCTGGCTTTGCCAGGTTCCCCACTGCAGCATaGACAGCATCAGTAGCAATGTGGTTCTCAGCTTTG +
Preference number: 6 (lower is better)
Translates to: PRAGFARFPTAA*TASVAMWFSAL
Trigger: CAAAGCTGAGAACCACATTGCTACTGATGCTGTCAATGCTGCAGTGGGGAACCTGGCAAAGCCAGCTCTTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS CAA 90 bp GTCCGAAGGGCTTTGATGGACGCCACGTCTGAATACTCGAGGATCTaGGCTATGAGGCTTGTGAGGGAGATATTCACGATGAGGAAGTCC +
Preference number: 6 (lower is better)
Translates to: VRRALMDATSEYSRI*AMRLVREIFTMRKS
Trigger: GGACTTCCTCATCGTGAATATCTCCCTCACAAGCCTCATAGCCAAGATCCTCGAGTATTCAGACGTGGCGTCCATCAAAGCCCTTCGGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS TCA 72 bp ACCGGGCTTGATGAAGATGTCTCCTGCCATTTCAGATaGGAGATTGTCAGCCTTGTGCGGATCTGTGCCGTT +
Preference number: 6 (lower is better)
Translates to: TGLDEDVSCHFR*EIVSLVRICAV
Trigger: AACGGCACAGATCCGCACAAGGCTGACAATCTCTCATCTGAAATGGCAGGAGACATCTTCATCAAGCCCGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS GCA 72 bp TGCCCTCTGTGCTCGGAAAGGTTCATTCAAGTAGTCTaGAGACAGGAAGTTCTTCTGTCCTGCAGCATCGAG +
Preference number: 6 (lower is better)
Translates to: CPLCSERFIQVV*RQEVLLSCSIE
Trigger: CTCGATGCTGCAGGACAGAAGAACTTCCTGTCTGCAGACTACTTGAATGAACCTTTCCGAGCACAGAGGGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS CCA 72 bp AATGCTTGCCTGGTCACAATGTCAAACACGAAGCCCTaGTACTTATTCAAAGGCCGTGGGATGGGCTTCTGG +
Preference number: 6 (lower is better)
Translates to: NACLVTMSNTKP*YLFKGRGMGFW
Trigger: CCAGAAGCCCATCCCACGGCCTTTGAATAAGTACCAGGGCTTCGTGTTTGACATTGTGACCAGGCAAGCATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS CAA 72 bp TGCAGCACCTCGAGGGCTTCCTTGAACTTCTTCTCCTaGGCTTCGATTTCTGCAATTGTTGCCTGGCTCTGT +
Preference number: 6 (lower is better)
Translates to: CSTSRASLNFFS*ASISAIVAWLC
Trigger: ACAGAGCCAGGCAACAATTGCAGAAATCGAAGCCAAGGAGAAGAAGTTCAAGGAAGCCCTCGAGGTGCTGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS CAA 72 bp TCTGACATCCTTGATTTCACCCTGGGTCTTCTCTCATaGGCGTTTTTGGGGGCTAAGGGTGATCCGTTGTGG +
Preference number: 6 (lower is better)
Translates to: SDILDFTLGLLS*AFLGAKGDPLW
Trigger: CCACAACGGATCACCCTTAGCCCCCAAAAACGCCAATGAGAGAAGACCCAGGGTGAAATCAAGGATGTCAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS CAA 72 bp GCACTGAAGGAGTTCAGCAGTAAAGCGATGAATAGGTaGAGCACCACCAGGTTGCCTAGCACCATCACTGTC +
Preference number: 6 (lower is better)
Translates to: ALKEFSSKAMNR*STTRLPSTITV
Trigger: GACAGTGATGGTGCTAGGCAACCTGGTGGTGCTCAACCTATTCATCGCTTTACTGCTGAACTCCTTCAGTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS CAA 90 bp GCATCAGATCCATTGCCACACAACAAGGGATCCGTAGTACCGGGCTaGATGAAGATGTCTCCTGCCATTTCAGATGAGAGATTGTCAGCC +
Preference number: 6 (lower is better)
Translates to: ASDPLPHNKGSVVPG*MKMSPAISDERLSA
Trigger: GGCTGACAATCTCTCATCTGAAATGGCAGGAGACATCTTCATCAAGCCCGGTACTACGGATCCCTTGTTGTGTGGCAATGGATCTGATGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS CAA 72 bp CCATTGCCACACAACAAGGGATCCGTAGTACCGGGCTaGATGAAGATGTCTCCTGCCATTTCAGATGAGAGA +
Preference number: 6 (lower is better)
Translates to: PLPHNKGSVVPG*MKMSPAISDER
Trigger: TCTCTCATCTGAAATGGCAGGAGACATCTTCATCAAGCCCGGTACTACGGATCCCTTGTTGTGTGGCAATGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS CAA 72 bp GATGGTGGGAAAGACGTAGCAGAAGCAGTTTCCGATTaGTCTGGGAGCCCACCGTTGTCATTTGCCATGAAT +
Preference number: 6 (lower is better)
Translates to: DGGKDVAEAVSD*SGSPPLSFAMN
Trigger: ATTCATGGCAAATGACAACGGTGGGCTCCCAGACAAATCGGAAACTGCTTCTGCTACGTCTTTCCCACCATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS CCA 72 bp TGGGAAAGACGTAGCAGAAGCAGTTTCCGATTTGTCTaGGAGCCCACCGTTGTCATTTGCCATGAATGTAAC +
Preference number: 6 (lower is better)
Translates to: WERRSRSSFRFV*EPTVVICHECN
Trigger: GTTACATTCATGGCAAATGACAACGGTGGGCTCCCAGACAAATCGGAAACTGCTTCTGCTACGTCTTTCCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS CAA 90 bp TGTTCTTTCTGCAGCACCTCGAGGGCTTCCTTGAACTTCTTCTCCTaGGCTTCGATTTCTGCAATTGTTGCCTGGCTCTGTTCCTCATAT +
Preference number: 6 (lower is better)
Translates to: CSFCSTSRASLNFFS*ASISAIVAWLCSSY
Trigger: ATATGAGGAACAGAGCCAGGCAACAATTGCAGAAATCGAAGCCAAGGAGAAGAAGTTCAAGGAAGCCCTCGAGGTGCTGCAGAAAGAACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS CAA 90 bp GTACCGGGCTTGATGAAGATGTCTCCTGCCATTTCAGATGAGAGATaGTCAGCCTTGTGCGGATCTGTGCCGTTCTTAATGCATTTATTC +
Preference number: 6 (lower is better)
Translates to: VPGLMKMSPAISDER*SALCGSVPFLMHLF
Trigger: GAATAAATGCATTAAGAACGGCACAGATCCGCACAAGGCTGACAATCTCTCATCTGAAATGGCAGGAGACATCTTCATCAAGCCCGGTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS TCA 72 bp TATAGGTACATGTACAGGCTCTCCTCCCAATTGGGCTaGCTGTTGATATCTCGAGAATCGACAGCTGCATAC +
Preference number: 6 (lower is better)
Translates to: YRYMYRLSSQLG*LLISRESTAAY
Trigger: GTATGCAGCTGTCGATTCTCGAGATATCAACAGTCAGCCCAATTGGGAGGAGAGCCTGTACATGTACCTATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS CAA 72 bp GTGATAAATATGGAGAACCAGGAGTGGACGGACACTTaGATGGCTGTTCTTCTGATCAGGTTGAAGGGACTG +
Preference number: 6 (lower is better)
Translates to: VINMENQEWTDT*MAVLLIRLKGL
Trigger: CAGTCCCTTCAACCTGATCAGAAGAACAGCCATCAAAGTGTCCGTCCACTCCTGGTTCTCCATATTTATCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS CAA 72 bp GTGATCTGTTGTCATCTGTCGAGCCTTCTGACATCCTaGATTTCACCCTGGGTCTTCTCTCATTGGCGTTTT +
Preference number: 6 (lower is better)
Translates to: VICCHLSSLLTS*ISPWVFSHWRF
Trigger: AAAACGCCAATGAGAGAAGACCCAGGGTGAAATCAAGGATGTCAGAAGGCTCGACAGATGACAACAGATCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS TCA 72 bp GGGACCAACGGCAGGTCCATCTGGATTAATATATTCTaGTTAGGTTTTGGGATTCTAAGAGGGCCAGAGAGT +
Preference number: 6 (lower is better)
Translates to: GTNGRSIWINIF*LGFGILRGPES
Trigger: ACTCTCTGGCCCTCTTAGAATCCCAAAACCTAATCAGAATATATTAATCCAGATGGACCTGCCGTTGGTCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS CAA 72 bp TTGATGAAGATGTCTCCTGCCATTTCAGATGAGAGATaGTCAGCCTTGTGCGGATCTGTGCCGTTCTTAATG +
Preference number: 6 (lower is better)
Translates to: LMKMSPAISDER*SALCGSVPFLM
Trigger: CATTAAGAACGGCACAGATCCGCACAAGGCTGACAATCTCTCATCTGAAATGGCAGGAGACATCTTCATCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS CAA 90 bp TACTCGAGTTTCTCTGGAAGATCAGTTCGGGTCATGCACACACAGTaGACCAAAATAGTGACAGTGATAAATATGGAGAACCAGGAGTGG +
Preference number: 6 (lower is better)
Translates to: YSSFSGRSVRVMHTQ*TKIVTVINMENQEW
Trigger: CCACTCCTGGTTCTCCATATTTATCACTGTCACTATTTTGGTCAACTGTGTGTGCATGACCCGAACTGATCTTCCAGAGAAACTCGAGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS GCA 72 bp TCTCCTGCCATTTCAGATGAGAGATTGTCAGCCTTGTaGGGATCTGTGCCGTTCTTAATGCATTTATTCTTG +
Preference number: 6 (lower is better)
Translates to: SPAISDERLSAL*GSVPFLMHLFL
Trigger: CAAGAATAAATGCATTAAGAACGGCACAGATCCGCACAAGGCTGACAATCTCTCATCTGAAATGGCAGGAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS GCA 72 bp AGAAGTCATAATACTGACAACACTCATTGCCCTCTGTaGTCGGAAAGGTTCATTCAAGTAGTCTGCAGACAG +
Preference number: 6 (lower is better)
Translates to: RSHNTDNTHCPL*SERFIQVVCRQ
Trigger: CTGTCTGCAGACTACTTGAATGAACCTTTCCGAGCACAGAGGGCAATGAGTGTTGTCAGTATTATGACTTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS CAA 90 bp TTGATGAAGATGTCTCCTGCCATTTCAGATGAGAGATTGTCAGCCTaGTGCGGATCTGTGCCGTTCTTAATGCATTTATTCTTGAGGTTC +
Preference number: 6 (lower is better)
Translates to: LMKMSPAISDERLSA*CGSVPFLMHLFLRF
Trigger: GAACCTCAAGAATAAATGCATTAAGAACGGCACAGATCCGCACAAGGCTGACAATCTCTCATCTGAAATGGCAGGAGACATCTTCATCAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS TCA 72 bp GTATCTTTATCAGAGCCTCGAAGGTGTAAACAACAGTaGAGGCATACTCGAGTTTCTCTGGAAGATCAGTTC +
Preference number: 6 (lower is better)
Translates to: VSLSEPRRCKQQ*RHTRVSLEDQF
Trigger: GAACTGATCTTCCAGAGAAACTCGAGTATGCCTTCACTGTTGTTTACACCTTCGAGGCTCTGATAAAGATAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS GCA 72 bp CTCAATGACAGAAGTCATAATACTGACAACACTCATTaGCCTCTGTGCTCGGAAAGGTTCATTCAAGTAGTC +
Preference number: 6 (lower is better)
Translates to: LNDRSHNTDNTH*PLCSERFIQVV
Trigger: GACTACTTGAATGAACCTTTCCGAGCACAGAGGGCAATGAGTGTTGTCAGTATTATGACTTCTGTCATTGAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2
CDS CAA 90 bp GAAGTTGACTTTGACGTTAACCCAGAAGAAGTGGCCAGTATTGTTTaGATTGTAACAGTCAGACTTGTTAGTCACGAATGTCGAATTCAC +
Preference number: 6 (lower is better)
Translates to: EVDFDVNPEEVASIV*IVTVRLVSHECRIH
Trigger: GTGAATTCGACATTCGTGACTAACAAGTCTGACTGTTACAATCAAAACAATACTGGCCACTTCTTCTGGGTTAACGTCAAAGTCAACTTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084787.6
ENSMUST00000213392.2
ENSMUST00000214408.2