Pregenerated sensors for SCIMP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000057135Ensembl transcript IDs: ENSMUST00000074572.7, ENSMUST00000108534.9
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TCACTGCCTTACAGCTACATTCACCCAGGGAACGAAAGAAAATGTTaGGAAATGAGTCAGTTCTCACAGGCCCAGTGGTCTGCACTAAGG | + |
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Preference number: 1 (lower is better) Translates to: SLPYSYIHPGNERKC*EMSQFSQAQWSALR Trigger: CCTTAGTGCAGACCACTGGGCCTGTGAGAACTGACTCATTTCTCAACATTTTCTTTCGTTCCCTGGGTGAATGTAGCTGTAAGGCAGTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108534.9 |
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| 3UTR-3UTR GCA 90 bp | CAGTTCTCACAGGCCCAGTGGTCTGCACTAAGGAAACTTCCTCCACAAAGGTGCCTGGGGATTAGGAAGTaGTTGTGTTATAATCCGGCT | + |
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Preference number: 2 (lower is better) Translates to: QFSQAQWSALRKLPPQRCLGIRK*LCYNPA Trigger: AGCCGGATTATAACACAAGCACTTCCTAATCCCCAG...GCACCTTTGTGGAGGAAGTTTCCTTAGTGCAGACCACTGGGCCTGTGAGAACTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108534.9 |
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| 3UTR-3UTR CCA 90 bp | CAGTTCTCACAGGCCCAGTGGTCTGCACTAAGGAAACTTCCTCCACAAAGGTGCAGCAGCAGAAACATCTaGAGCAACAGAAACATCTGG | + |
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Preference number: 2 (lower is better) Translates to: QFSQAQWSALRKLPPQRCSSRNI*SNRNIW Trigger: CCAGATGTTTCTGTTGCTCCAGATGTTTCTGCTGCT...GCACCTTTGTGGAGGAAGTTTCCTTAGTGCAGACCACTGGGCCTGTGAGAACTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108534.9 |
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| 3UTR-3UTR CCA 90 bp | CACTTCAGCTTGCCAAAAAGGTGTGGTTTTAGAGTGCTGGGTTTCGGTGGTTGCATCATAATCATTTTCTaGCTCGGTGGAGCCCGAGAT | + |
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Preference number: 2 (lower is better) Translates to: HFSLPKRCGFRVLGFGGCIIIIF*LGGARD Trigger: ATCTCGGGCTCCACCGAGCCAGAAAATGATTATGAT...GCAACCACCGAAACCCAGCACTCTAAAACCACACCTTTTTGGCAAGCTGAAGTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000074572.7 |
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| 3UTR-3UTR CCA 90 bp | GAGCAACAGAAACATCTGGAGCAGCAGAAATATTTGGAGCAACAGAAACATCTGTTCACATGGCTGAGGTaGCTTCCTCTGGGGATTAGG | + |
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Preference number: 2 (lower is better) Translates to: EQQKHLEQQKYLEQQKHLFTWLR*LPLGIR Trigger: CCTAATCCCCAGAGGAAGCCACCTCAGCCATGTGAA...CAGATGTTTCTGTTGCTCCAAATATTTCTGCTGCTCCAGATGTTTCTGTTGCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108534.9 |
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| 3UTR-3UTR CCA 90 bp | AAGAAAATGTTGAGAAATGAGTCAGTTCTCACAGGCCCAGTGGTCTGCACTAAGAACATCAGGAGCATCTaGAGCAACAGGAGCATCTGG | + |
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Preference number: 2 (lower is better) Translates to: KKMLRNESVLTGPVVCTKNIRSI*SNRSIW Trigger: CCAGATGCTCCTGTTGCTCCAGATGCTCCTGATGTT...CTTAGTGCAGACCACTGGGCCTGTGAGAACTGACTCATTTCTCAACATTTTCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108534.9 |
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| 3UTR-3UTR GCA 90 bp | AAGAAAATGTTGAGAAATGAGTCAGTTCTCACAGGCCCAGTGGTCTGCACTAAGAGCTGTCCTGTCTTCTaGTGTAGCTTTCACATGGCT | + |
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Preference number: 2 (lower is better) Translates to: KKMLRNESVLTGPVVCTKSCPVF*CSFHMA Trigger: AGCCATGTGAAAGCTACAGCAGAAGACAGGACAGCT...CTTAGTGCAGACCACTGGGCCTGTGAGAACTGACTCATTTCTCAACATTTTCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108534.9 |
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| 3UTR-3UTR CCA 90 bp | ATCTGGAGCAACAGAAACATCTGGAGCAACAGAAACATCTGGAGCAGCAGAAATAGCAACAGAAACATCTaGAGCCTCGGGAACATCAAG | + |
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Preference number: 2 (lower is better) Translates to: IWSNRNIWSNRNIWSSRNSNRNI*SLGNIK Trigger: CTTGATGTTCCCGAGGCTCCAGATGTTTCTGTTGCT...ATTTCTGCTGCTCCAGATGTTTCTGTTGCTCCAGATGTTTCTGTTGCTCCAGAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108534.9 |
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| 3UTR-3UTR CCA 90 bp | AAGAAAATGTTGAGAAATGAGTCAGTTCTCACAGGCCCAGTGGTCTGCACTAAGACATCCTCAGAATCTTaGGGTAGAGCTTCTGCAGTG | + |
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Preference number: 2 (lower is better) Translates to: KKMLRNESVLTGPVVCTKTSSES*GRASAV Trigger: CACTGCAGAAGCTCTACCCCAAGATTCTGAGGATGT...CTTAGTGCAGACCACTGGGCCTGTGAGAACTGACTCATTTCTCAACATTTTCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108534.9 |
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| 3UTR-3UTR GCA 90 bp | AATCCGGCTATTCTAGAGTATTCTAAAACGAGCTGTGTAAACCCACTTCAGCTTGGTGTGGTTTTAGAGTaGTGGGTTTCGGTGGTTGCT | + |
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Preference number: 2 (lower is better) Translates to: NPAILEYSKTSCVNPLQLGVVLE*WVSVVA Trigger: AGCAACCACCGAAACCCAGCACTCTAAAACCACACC...AAGCTGAAGTGGGTTTACACAGCTCGTTTTAGAATACTCTAGAATAGCCGGATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074572.7 |
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| 3UTR-3UTR CCA 90 bp | AGGAAGTGCTTGTGTTATAATCCGGCTATTCTAGAGTATTCTAAAACGAGCTGTGTGGTTTTAGAGTGCTaGGTTTCGGTGGTTGCTGGA | + |
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Preference number: 2 (lower is better) Translates to: RKCLCYNPAILEYSKTSCVVLEC*VSVVAG Trigger: TCCAGCAACCACCGAAACCCAGCACTCTAAAACCAC...ACAGCTCGTTTTAGAATACTCTAGAATAGCCGGATTATAACACAAGCACTTCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074572.7 |
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| 3UTR-3UTR CCA 90 bp | ATTCTAGAGTATTCTAAAACGAGCTGTGTAAACCCACTTCAGCTTGCCAAAAAGAGTGCTGGGTTTCGGTaGTTGCTGGAATCTCAACAT | + |
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Preference number: 2 (lower is better) Translates to: ILEYSKTSCVNPLQLAKKSAGFR*LLESQH Trigger: ATGTTGAGATTCCAGCAACCACCGAAACCCAGCACT...CTTTTTGGCAAGCTGAAGTGGGTTTACACAGCTCGTTTTAGAATACTCTAGAAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000074572.7 |
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| 3UTR CCA 72 bp | CATCAAGCTGTCCTGTCTTCTGCTGTAGCTTTCACATaGCTGAGGTGGCTTCCTCTGGGGATTAGGAAGTGC | + |
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Preference number: 3 (lower is better) Translates to: HQAVLSSAVAFT*LRWLPLGIRKC Trigger: GCACTTCCTAATCCCCAGAGGAAGCCACCTCAGCCATGTGAAAGCTACAGCAGAAGACAGGACAGCTTGATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108534.9 |
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| 3UTR CCA 72 bp | TGGAGCAGCAGAAACATCTGGAGCAACAGAAACATCTaGAGCCTCGGGAACATCAAGCTGTCCTGTCTTCTG | + |
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Preference number: 3 (lower is better) Translates to: WSSRNIWSNRNI*SLGNIKLSCLL Trigger: CAGAAGACAGGACAGCTTGATGTTCCCGAGGCTCCAGATGTTTCTGTTGCTCCAGATGTTTCTGCTGCTCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108534.9 |
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| 3UTR GCA 72 bp | TTGAGAAATGAGTCAGTTCTCACAGGCCCAGTGGTCTaGACTAAGGAAACTTCCTCCACAAAGGTGCCAAGG | + |
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Preference number: 3 (lower is better) Translates to: LRNESVLTGPVV*TKETSSTKVPR Trigger: CCTTGGCACCTTTGTGGAGGAAGTTTCCTTAGTGCAGACCACTGGGCCTGTGAGAACTGACTCATTTCTCAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108534.9 |
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| 3UTR-3UTR CAA 90 bp | CAGTTCTCACAGGCCCAGTGGTCTGCACTAAGGAAACTTCCTCCACAAAGGTGCGGGATTAGGAAGTGCTaGTGTTATAATCCGGCTATT | + |
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Preference number: 3 (lower is better) Translates to: QFSQAQWSALRKLPPQRCGIRKC*CYNPAI Trigger: AATAGCCGGATTATAACACAAGCACTTCCTAATCCC...GCACCTTTGTGGAGGAAGTTTCCTTAGTGCAGACCACTGGGCCTGTGAGAACTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108534.9 |
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| 3UTR GCA 72 bp | CCCACTTCAGCTTGCCAAAAAGGTGTGGTTTTAGAGTaGTGGGTTTCGGTGGTTGCTGGAATCTCAACATCA | + |
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Preference number: 3 (lower is better) Translates to: PTSACQKGVVLE*WVSVVAGISTS Trigger: TGATGTTGAGATTCCAGCAACCACCGAAACCCAGCACTCTAAAACCACACCTTTTTGGCAAGCTGAAGTGGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000074572.7 |
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| 3UTR TCA 72 bp | TACAGCTACATTCACCCAGGGAACGAAAGAAAATGTTaGGAAATGAGTCAGTTCTCACAGGCCCAGTGGTCT | + |
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Preference number: 3 (lower is better) Translates to: YSYIHPGNERKC*EMSQFSQAQWS Trigger: AGACCACTGGGCCTGTGAGAACTGACTCATTTCTCAACATTTTCTTTCGTTCCCTGGGTGAATGTAGCTGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108534.9 |
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| 3UTR GCA 72 bp | ACATGGCTGAGGTGGCTTCCTCTGGGGATTAGGAAGTaGTTGTGTTATAATCCGGCTATTCTAGAGTATTCT | + |
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Preference number: 3 (lower is better) Translates to: TWLRWLPLGIRK*LCYNPAILEYS Trigger: AGAATACTCTAGAATAGCCGGATTATAACACAAGCACTTCCTAATCCCCAGAGGAAGCCACCTCAGCCATGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074572.7 |
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| 3UTR CCA 72 bp | GGTTGCTGGAATCTCAACATCATCATAATCATTTTCTaGCTCGGTGGAGCCCGAGATAGCAAAGACCTTCTT | + |
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Preference number: 3 (lower is better) Translates to: GCWNLNIIIIIF*LGGARDSKDLL Trigger: AAGAAGGTCTTTGCTATCTCGGGCTCCACCGAGCCAGAAAATGATTATGATGATGTTGAGATTCCAGCAACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074572.7 |
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| 3UTR CCA 72 bp | ACTTCAGCTTGCCAAAAAGGTGTGGTTTTAGAGTGCTaGGTTTCGGTGGTTGCTGGAATCTCAACATCATCA | + |
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Preference number: 3 (lower is better) Translates to: TSACQKGVVLEC*VSVVAGISTSS Trigger: TGATGATGTTGAGATTCCAGCAACCACCGAAACCCAGCACTCTAAAACCACACCTTTTTGGCAAGCTGAAGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000074572.7 |
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| 3UTR-3UTR CAA 90 bp | GCTTGCCAAAAAGGTGTGGTTTTAGAGTGCTGGGTTTCGGTGGTTGCTGGAATCATAGCAAAGACCTTCTaGTTCCTAACTTTCTTCACT | + |
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Preference number: 3 (lower is better) Translates to: ACQKGVVLECWVSVVAGIIAKTF*FLTFFT Trigger: AGTGAAGAAAGTTAGGAACAAGAAGGTCTTTGCTAT...GATTCCAGCAACCACCGAAACCCAGCACTCTAAAACCACACCTTTTTGGCAAGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000074572.7 |
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| 3UTR CCA 72 bp | AGGTGTGGTTTTAGAGTGCTGGGTTTCGGTGGTTGCTaGAATCTCAACATCATCATAATCATTTTCTGGCTC | + |
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Preference number: 3 (lower is better) Translates to: RCGFRVLGFGGC*NLNIIIIIFWL Trigger: GAGCCAGAAAATGATTATGATGATGTTGAGATTCCAGCAACCACCGAAACCCAGCACTCTAAAACCACACCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074572.7 |
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| 3UTR-3UTR CAA 90 bp | AAGAAAATGTTGAGAAATGAGTCAGTTCTCACAGGCCCAGTGGTCTGCACTAAGGAGCAGCAGAAATATTaGGAGCAACAGAAACATCTG | + |
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Preference number: 3 (lower is better) Translates to: KKMLRNESVLTGPVVCTKEQQKY*EQQKHL Trigger: CAGATGTTTCTGTTGCTCCAAATATTTCTGCTGCTC...CTTAGTGCAGACCACTGGGCCTGTGAGAACTGACTCATTTCTCAACATTTTCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108534.9 |
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| 3UTR TCA 72 bp | TTATGGTTGAGGATCACCACAAATAAGGAATTGTATTaGAGGATCCCTGCATTAGGAAGGTTGAGAGTCACT | + |
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Preference number: 3 (lower is better) Translates to: LWLRITTNKELY*RIPALGRLRVT Trigger: AGTGACTCTCAACCTTCCTAATGCAGGGATCCTTCAATACAATTCCTTATTTGTGGTGATCCTCAACCATAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108534.9 |
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| CDS-3UTR TCA 90 bp | GGTTGCTGGAATCTCAACATCATCATAATCATTTTCTGGCTCGGTGGAGCCCGAGTCTCCTGGAAAAGGTaGACCCCTGGGTGGCAGAGC | + |
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Preference number: 4 (lower is better) Translates to: GCWNLNIIIIIFWLGGARVSWKR*TPGWQS Trigger: GCTCTGCCACCCAGGGGTTCACCTTTTCCAGGAGAC...TCGGGCTCCACCGAGCCAGAAAATGATTATGATGATGTTGAGATTCCAGCAACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000074572.7 |
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| CDS-3UTR GCA 90 bp | AAACATCTGGAGCAACAGAAACATCTGGAGCCTCGGGAACATCAAGCTGTCCTGCTGCCTTGTCTAAGCTaGCACCTGCAGACACAGTAC | + |
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Preference number: 4 (lower is better) Translates to: KHLEQQKHLEPREHQAVLLPCLS*HLQTQY Trigger: GTACTGTGTCTGCAGGTGGCAGCTTAGACAAGGCAG...CAGGACAGCTTGATGTTCCCGAGGCTCCAGATGTTTCTGTTGCTCCAGATGTTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108534.9 |
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| CDS-3UTR CCA 90 bp | CACTTCAGCTTGCCAAAAAGGTGTGGTTTTAGAGTGCTGGGTTTCGGTGGTTGCGAAAAGGTGAACCCCTaGGTGGCAGAGCAGGTAACT | + |
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Preference number: 4 (lower is better) Translates to: HFSLPKRCGFRVLGFGGCEKVNP*VAEQVT Trigger: AGTTACCTGCTCTGCCACCCAGGGGTTCACCTTTTC...GCAACCACCGAAACCCAGCACTCTAAAACCACACCTTTTTGGCAAGCTGAAGTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000074572.7 |
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| CDS-3UTR CCA 90 bp | AACATCTGGAGCAACAGAAACATCTGGAGCCTCGGGAACATCAAGCTGTCCTGTGAAAAGGTGAACCCCTaGGTGGCAGAGCAGGTAACT | + |
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Preference number: 4 (lower is better) Translates to: NIWSNRNIWSLGNIKLSCEKVNP*VAEQVT Trigger: AGTTACCTGCTCTGCCACCCAGGGGTTCACCTTTTC...ACAGGACAGCTTGATGTTCCCGAGGCTCCAGATGTTTCTGTTGCTCCAGATGTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108534.9 |
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| CDS-3UTR CCA 90 bp | CAGTTCTCACAGGCCCAGTGGTCTGCACTAAGGAAACTTCCTCCACAAAGGTGCAGTGCTGGGTTTCGGTaGTTGCTGGAATCTCAACAT | + |
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Preference number: 4 (lower is better) Translates to: QFSQAQWSALRKLPPQRCSAGFR*LLESQH Trigger: ATGTTGAGATTCCAGCAACCACCGAAACCCAGCACT...GCACCTTTGTGGAGGAAGTTTCCTTAGTGCAGACCACTGGGCCTGTGAGAACTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108534.9 |
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| CDS-3UTR TCA 90 bp | GCAACAGAAACATCTGGAGCAGCAGAAATATTTGGAGCAACAGAAACATCTGGAGTCTCCTGGAAAAGGTaGACCCCTGGGTGGCAGAGC | + |
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Preference number: 4 (lower is better) Translates to: ATETSGAAEIFGATETSGVSWKR*TPGWQS Trigger: GCTCTGCCACCCAGGGGTTCACCTTTTCCAGGAGAC...TCCAGATGTTTCTGTTGCTCCAAATATTTCTGCTGCTCCAGATGTTTCTGTTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108534.9 |
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| CDS-3UTR GCA 90 bp | GCTTGCCAAAAAGGTGTGGTTTTAGAGTGCTGGGTTTCGGTGGTTGCTGGAATCGTTCCTTGTCTAAGCTaGCACCTGCAGACACAGTAC | + |
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Preference number: 4 (lower is better) Translates to: ACQKGVVLECWVSVVAGIVPCLS*HLQTQY Trigger: GTACTGTGTCTGCAGGTGGCAGCTTAGACAAGGAAC...GATTCCAGCAACCACCGAAACCCAGCACTCTAAAACCACACCTTTTTGGCAAGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000074572.7 |
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| CDS-3UTR CCA 90 bp | AGTCAGTTCTCACAGGCCCAGTGGTCTGCACTAAGGAAACTTCCTCCACAAAGGATCATAATCATTTTCTaGCTCGGTGGAGCCCGAGAT | + |
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Preference number: 4 (lower is better) Translates to: SQFSQAQWSALRKLPPQRIIIIF*LGGARD Trigger: ATCTCGGGCTCCACCGAGCCAGAAAATGATTATGAT...CCTTTGTGGAGGAAGTTTCCTTAGTGCAGACCACTGGGCCTGTGAGAACTGACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108534.9 |
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| 3UTR CAA 72 bp | TCTGGCTCGGTGGAGCCCGAGATAGCAAAGACCTTCTaGTTCCTAACTTTCTTCACTGATGAGTACCAAGCT | + |
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Preference number: 4 (lower is better) Translates to: SGSVEPEIAKTF*FLTFFTDEYQA Trigger: AGCTTGGTACTCATCAGTGAAGAAAGTTAGGAACAAGAAGGTCTTTGCTATCTCGGGCTCCACCGAGCCAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074572.7 |
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| CDS-3UTR GCA 90 bp | ATCTGGAGCAACAGAAACATCTGGAGCAACAGAAACATCTGGAGCAGCAGAAATGGTGTGGTTTTAGAGTaGTGGGTTTCGGTGGTTGCT | + |
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Preference number: 4 (lower is better) Translates to: IWSNRNIWSNRNIWSSRNGVVLE*WVSVVA Trigger: AGCAACCACCGAAACCCAGCACTCTAAAACCACACC...ATTTCTGCTGCTCCAGATGTTTCTGTTGCTCCAGATGTTTCTGTTGCTCCAGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108534.9 |
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| CDS-3UTR CCA 90 bp | CAACAGAAACATCTGGAGCAACAGAAACATCTGGAGCAGCAGAAATATTTGGAGGTGGTTTTAGAGTGCTaGGTTTCGGTGGTTGCTGGA | + |
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Preference number: 4 (lower is better) Translates to: QQKHLEQQKHLEQQKYLEVVLEC*VSVVAG Trigger: TCCAGCAACCACCGAAACCCAGCACTCTAAAACCAC...CTCCAAATATTTCTGCTGCTCCAGATGTTTCTGTTGCTCCAGATGTTTCTGTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108534.9 |
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| CDS-3UTR TCA 90 bp | TTTCGGTGGTTGCTGGAATCTCAACATCATCATAATCATTTTCTGGCTCGGTGGTCTTCCATCCTGTTTTaGGGGCTTAGCAATTTCCCA | + |
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Preference number: 4 (lower is better) Translates to: FRWLLESQHHHNHFLARWSSILF*GLSNFP Trigger: TGGGAAATTGCTAAGCCCTCAAAACAGGATGGAAGA...CCACCGAGCCAGAAAATGATTATGATGATGTTGAGATTCCAGCAACCACCGAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000074572.7 |
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| 3UTR CAA 72 bp | TGGCTGAGGTGGCTTCCTCTGGGGATTAGGAAGTGCTaGTGTTATAATCCGGCTATTCTAGAGTATTCTAAA | + |
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Preference number: 4 (lower is better) Translates to: WLRWLPLGIRKC*CYNPAILEYSK Trigger: TTTAGAATACTCTAGAATAGCCGGATTATAACACAAGCACTTCCTAATCCCCAGAGGAAGCCACCTCAGCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074572.7 |
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| CDS-3UTR TCA 90 bp | GAGCAACAGAAACATCTGGAGCAGCAGAAATATTTGGAGCAACAGAAACATCTGTCTTCCATCCTGTTTTaGGGGCTTAGCAATTTCCCA | + |
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Preference number: 4 (lower is better) Translates to: EQQKHLEQQKYLEQQKHLSSILF*GLSNFP Trigger: TGGGAAATTGCTAAGCCCTCAAAACAGGATGGAAGA...CAGATGTTTCTGTTGCTCCAAATATTTCTGCTGCTCCAGATGTTTCTGTTGCTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108534.9 |
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| CDS-3UTR CCA 90 bp | AAGAAAATGTTGAGAAATGAGTCAGTTCTCACAGGCCCAGTGGTCTGCACTAAGGGTTTCGGTGGTTGCTaGAATCTCAACATCATCATA | + |
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Preference number: 4 (lower is better) Translates to: KKMLRNESVLTGPVVCTKGFGGC*NLNIII Trigger: TATGATGATGTTGAGATTCCAGCAACCACCGAAACC...CTTAGTGCAGACCACTGGGCCTGTGAGAACTGACTCATTTCTCAACATTTTCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108534.9 |
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| CDS-3UTR GCA 90 bp | CAACAGAAACATCTGGAGCAACAGAAACATCTGGAGCAGCAGAAATATTTGGAGAAACCCACTTCAGCTTaGCAAAAAGGTGTGGTTTTA | + |
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Preference number: 4 (lower is better) Translates to: QQKHLEQQKHLEQQKYLEKPTSA*QKGVVL Trigger: TAAAACCACACCTTTTTGGCAAGCTGAAGTGGGTTT...CTCCAAATATTTCTGCTGCTCCAGATGTTTCTGTTGCTCCAGATGTTTCTGTTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000108534.9 |
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| CDS-3UTR CAA 90 bp | GAGCAACAGAAACATCTGGAGCAGCAGAAATATTTGGAGCAACAGAAACATCTGTTCCCAGTTCCTGCCTaGTCTAAGCTGCCACCTGCA | + |
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Preference number: 5 (lower is better) Translates to: EQQKHLEQQKYLEQQKHLFPVPA*SKLPPA Trigger: TGCAGGTGGCAGCTTAGACAAGGCAGGAACTGGGAA...CAGATGTTTCTGTTGCTCCAAATATTTCTGCTGCTCCAGATGTTTCTGTTGCTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108534.9 |
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| CDS-3UTR CAA 90 bp | CAACAGAAACATCTGGAGCAACAGAAACATCTGGAGCAGCAGAAATATTTGGAGAAGCTGAGGGTTGTCTaGGAGCTTCCTGTGGGGCTA | + |
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Preference number: 5 (lower is better) Translates to: QQKHLEQQKHLEQQKYLEKLRVV*ELPVGL Trigger: TAGCCCCACAGGAAGCTCCAAGACAACCCTCAGCTT...CTCCAAATATTTCTGCTGCTCCAGATGTTTCTGTTGCTCCAGATGTTTCTGTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108534.9 |
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| CDS-3UTR CAA 90 bp | GAAACATCTGGAGCAACAGAAACATCTGGAGCAGCAGAAATATTTGGAGCAACAATAGCAAAGACCTTCTaGTTCCTAACTTTCTTCACT | + |
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Preference number: 5 (lower is better) Translates to: ETSGATETSGAAEIFGATIAKTF*FLTFFT Trigger: AGTGAAGAAAGTTAGGAACAAGAAGGTCTTTGCTAT...TGTTGCTCCAAATATTTCTGCTGCTCCAGATGTTTCTGTTGCTCCAGATGTTTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108534.9 |
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