Pregenerated sensors for SCGN (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021337Ensembl transcript IDs: ENSMUST00000021770.8, ENSMUST00000142826.3
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GAGGAGATAGACCAAGGTCAAGGAACAAACATGGAAGAAGCTGTATaGGGCTTCCCATGGGACAAGATCATGGCTGCCTCTGGAAGCAGC | + |
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Preference number: 1 (lower is better) Translates to: EEIDQGQGTNMEEAV*GFPWDKIMAASGSS Trigger: GCTGCTTCCAGAGGCAGCCATGATCTTGTCCCATGGGAAGCCCCATACAGCTTCTTCCATGTTTGTTCCTTGACCTTGGTCTATCTCCTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021770.8 |
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| 3UTR CCA 90 bp | CCCTCCATCAAGAGTACCAAACTGTCAGGGAGAAGGTCCATTAACTaGGTCCCCAAGAGCAAAGCACAAACACACTTCTCACAGCAGGAA | + |
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Preference number: 1 (lower is better) Translates to: PSIKSTKLSGRRSIN*VPKSKAQTHFSQQE Trigger: TTCCTGCTGTGAGAAGTGTGTTTGTGCTTTGCTCTTGGGGACCCAGTTAATGGACCTTCTCCCTGACAGTTTGGTACTCTTGATGGAGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021770.8 |
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| 3UTR CCA 72 bp | GGAACAAACATGGAAGAAGCTGTATGGGGCTTCCCATaGGACAAGATCATGGCTGCCTCTGGAAGCAGCACC | + |
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Preference number: 3 (lower is better) Translates to: GTNMEEAVWGFP*DKIMAASGSST Trigger: GGTGCTGCTTCCAGAGGCAGCCATGATCTTGTCCCATGGGAAGCCCCATACAGCTTCTTCCATGTTTGTTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021770.8 |
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| 3UTR CCA 72 bp | GACCAAGGTCAAGGAACAAACATGGAAGAAGCTGTATaGGGCTTCCCATGGGACAAGATCATGGCTGCCTCT | + |
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Preference number: 3 (lower is better) Translates to: DQGQGTNMEEAV*GFPWDKIMAAS Trigger: AGAGGCAGCCATGATCTTGTCCCATGGGAAGCCCCATACAGCTTCTTCCATGTTTGTTCCTTGACCTTGGTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021770.8 |
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| CDS-3UTR GCA 90 bp | TGTCAGGGAGAAGGTCCATTAACTGGGTCCCCAAGAGCAAAGCACAAACACACTTCCTTGTCGAAGCGCTaGCAGATCTGCCAGAAGCAG | + |
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Preference number: 4 (lower is better) Translates to: CQGEGPLTGSPRAKHKHTSLSKR*QICQKQ Trigger: CTGCTTCTGGCAGATCTGGCAGCGCTTCGACAAGGA...AGTGTGTTTGTGCTTTGCTCTTGGGGACCCAGTTAATGGACCTTCTCCCTGACA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021770.8 |
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| CDS-3UTR TCA 90 bp | AACATGGAAGAAGCTGTATGGGGCTTCCCATGGGACAAGATCATGGCTGCCTCTACAAAGCTCAGCAGCTaGTATGAAACCACTGCTGTC | + |
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Preference number: 4 (lower is better) Translates to: NMEEAVWGFPWDKIMAASTKLSS*YETTAV Trigger: GACAGCAGTGGTTTCATATCAGCTGCTGAGCTTTGT...AGAGGCAGCCATGATCTTGTCCCATGGGAAGCCCCATACAGCTTCTTCCATGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021770.8 |
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| CDS-3UTR TCA 90 bp | TCAGGGAGAAGGTCCATTAACTGGGTCCCCAAGAGCAAAGCACAAACACACTTCTCTTTCCATCCTTGTTaGCATCGCAATGGCGAAGCA | + |
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Preference number: 4 (lower is better) Translates to: SGRRSINWVPKSKAQTHFSFHPC*HRNGEA Trigger: TGCTTCGCCATTGCGATGTCAACAAGGATGGAAAGA...GAAGTGTGTTTGTGCTTTGCTCTTGGGGACCCAGTTAATGGACCTTCTCCCTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021770.8 |
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| CDS-3UTR CCA 90 bp | CCCAAGAGCAAAGCACAAACACACTTCTCACAGCAGGAACACAGACACTTAAGTAAATCCATCCACTTCTaGGCCTTCCAGGGCTCCAGT | + |
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Preference number: 4 (lower is better) Translates to: PKSKAQTHFSQQEHRHLSKSIHF*AFQGSS Trigger: ACTGGAGCCCTGGAAGGCCCAGAAGTGGATGGATTT...ACTTAAGTGTCTGTGTTCCTGCTGTGAGAAGTGTGTTTGTGCTTTGCTCTTGGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021770.8 |
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| CDS-3UTR CCA 90 bp | CAAAGCACAAACACACTTCTCACAGCAGGAACACAGACACTTAAGTGGAGAGCAGCCAGCTCAGACTTCTaGATCTTTCCATCCTTGTTG | + |
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Preference number: 4 (lower is better) Translates to: QSTNTLLTAGTQTLKWRAASSDF*IFPSLL Trigger: CAACAAGGATGGAAAGATCCAGAAGTCTGAGCTGGC...TGCTCTCCACTTAAGTGTCTGTGTTCCTGCTGTGAGAAGTGTGTTTGTGCTTTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021770.8 |
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| CDS-3UTR GCA 90 bp | TGTCAGGGAGAAGGTCCATTAACTGGGTCCCCAAGAGCAAAGCACAAACACACTCTCAGTGCCAGATTTTaGCAGCAAATGATCAAAGAA | + |
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Preference number: 4 (lower is better) Translates to: CQGEGPLTGSPRAKHKHTLSARF*QQMIKE Trigger: TTCTTTGATCATTTGCTGGCAAAATCTGGCACTGAG...AGTGTGTTTGTGCTTTGCTCTTGGGGACCCAGTTAATGGACCTTCTCCCTGACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021770.8 |
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| CDS-3UTR GCA 90 bp | CAAAGCACAAACACACTTCTCACAGCAGGAACACAGACACTTAAGTGGAGAGCAGAGCGCCAGAATCCTTaGCAAGTCATTAAGATCCAA | + |
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Preference number: 4 (lower is better) Translates to: QSTNTLLTAGTQTLKWRAERQNP*QVIKIQ Trigger: TTGGATCTTAATGACTTGGCAAGGATTCTGGCGCTC...TGCTCTCCACTTAAGTGTCTGTGTTCCTGCTGTGAGAAGTGTGTTTGTGCTTTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021770.8 |
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| CDS-3UTR TCA 90 bp | CCCAAGAGCAAAGCACAAACACACTTCTCACAGCAGGAACACAGACACTTAAGTGCTCCATCATATCTTTaGCAAATCCATCCACTTCTG | + |
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Preference number: 4 (lower is better) Translates to: PKSKAQTHFSQQEHRHLSAPSYL*QIHPLL Trigger: CAGAAGTGGATGGATTTGTCAAAGATATGATGGAGC...ACTTAAGTGTCTGTGTTCCTGCTGTGAGAAGTGTGTTTGTGCTTTGCTCTTGGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021770.8 |
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| CDS-3UTR CCA 90 bp | TCAGGGAGAAGGTCCATTAACTGGGTCCCCAAGAGCAAAGCACAAACACACTTCCAGATAAGAACATACTaGCAAGCTCTTTCATCAGTA | + |
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Preference number: 4 (lower is better) Translates to: SGRRSINWVPKSKAQTHFQIRTY*QALSSV Trigger: TACTGATGAAAGAGCTTGCCAGTATGTTCTTATCTG...GAAGTGTGTTTGTGCTTTGCTCTTGGGGACCCAGTTAATGGACCTTCTCCCTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021770.8 |
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| CDS-3UTR TCA 90 bp | CCCAAGAGCAAAGCACAAACACACTTCTCACAGCAGGAACACAGACACTTAAGTGCATCCATTTTAAACTaGAGAAGGAAGTTTTCCTGG | + |
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Preference number: 4 (lower is better) Translates to: PKSKAQTHFSQQEHRHLSASILN*RRKFSW Trigger: CCAGGAAAACTTCCTTCTTCAGTTTAAAATGGATGC...ACTTAAGTGTCTGTGTTCCTGCTGTGAGAAGTGTGTTTGTGCTTTGCTCTTGGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021770.8 |
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| CDS-3UTR CCA 90 bp | CAAAGCACAAACACACTTCTCACAGCAGGAACACAGACACTTAAGTGGAGAGCAATGTTCTTTTTGTGGTaGAGGAAAAGGTCTCGAAGA | + |
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Preference number: 4 (lower is better) Translates to: QSTNTLLTAGTQTLKWRAMFFLW*RKRSRR Trigger: TCTTCGAGACCTTTTCCTCCACCACAAAAAGAACAT...TGCTCTCCACTTAAGTGTCTGTGTTCCTGCTGTGAGAAGTGTGTTTGTGCTTTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021770.8 |
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| CDS-3UTR CCA 90 bp | TTTATTTCCACAAGAAGACATATTTGTACATGTGACAGCACGATACAGGTGACAGAAATGTTCTTTTTGTaGTGGAGGAAAAGGTCTCGA | + |
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Preference number: 4 (lower is better) Translates to: FISTRRHICTCDSTIQVTEMFFL*WRKRSR Trigger: TCGAGACCTTTTCCTCCACCACAAAAAGAACATTTC...TGTCACCTGTATCGTGCTGTCACATGTACAAATATGTCTTCTTGTGGAAATAAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021770.8 |
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| CDS-3UTR GCA 90 bp | TTTATTTCCACAAGAAGACATATTTGTACATGTGACAGCACGATACAGGTGACATATTTGCGCCAAATCTaGATAAACTCTACACTGTTA | + |
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Preference number: 4 (lower is better) Translates to: FISTRRHICTCDSTIQVTYLRQI*INSTLL Trigger: TAACAGTGTAGAGTTTATGCAGATTTGGCGCAAATA...TGTCACCTGTATCGTGCTGTCACATGTACAAATATGTCTTCTTGTGGAAATAAA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021770.8 |
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| CDS CCA 90 bp | GCCAGCTCAGACTTCTGGATCTTTCCATCCTTGTTGACATCGCAATaGCGAAGCAGAATCTCCCGGAACTTATCCAGATCCACACCACTG | + |
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Preference number: 5 (lower is better) Translates to: ASSDFWIFPSLLTSQ*RSRISRNLSRSTPL Trigger: CAGTGGTGTGGATCTGGATAAGTTCCGGGAGATTCTGCTTCGCCATTGCGATGTCAACAAGGATGGAAAGATCCAGAAGTCTGAGCTGGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021770.8 ENSMUST00000142826.3 |
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| CDS-3UTR CAA 90 bp | GGGCCACTCCCTCCATCAAGAGTACCAAACTGTCAGGGAGAAGGTCCATTAACTCTGTCCGCATCGTATTaGCGCCAAATCTGCATAAAC | + |
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Preference number: 5 (lower is better) Translates to: GPLPPSRVPNCQGEGPLTLSASY*RQICIN Trigger: GTTTATGCAGATTTGGCGCAAATACGATGCGGACAG...AGTTAATGGACCTTCTCCCTGACAGTTTGGTACTCTTGATGGAGGGAGTGGCCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021770.8 |
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| CDS TCA 90 bp | CAAGACACAGTGCCAGCTCAGACTTCTGGATCTTTCCATCCTTGTTaGCATCGCAATGGCGAAGCAGAATCTCCCGGAACTTATCCAGAT | + |
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Preference number: 5 (lower is better) Translates to: QDTVPAQTSGSFHPC*HRNGEAESPGTYPD Trigger: ATCTGGATAAGTTCCGGGAGATTCTGCTTCGCCATTGCGATGTCAACAAGGATGGAAAGATCCAGAAGTCTGAGCTGGCACTGTGTCTTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021770.8 ENSMUST00000142826.3 |
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| CDS CCA 90 bp | GGGCTGGACCAGCTCCATCATATCTTTGACAAATCCATCCACTTCTaGGCCTTCCAGGGCTCCAGTTTTACTAACATCGTAATGGGCAAA | + |
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Preference number: 5 (lower is better) Translates to: GLDQLHHIFDKSIHF*AFQGSSFTNIVMGK Trigger: TTTGCCCATTACGATGTTAGTAAAACTGGAGCCCTGGAAGGCCCAGAAGTGGATGGATTTGTCAAAGATATGATGGAGCTGGTCCAGCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021770.8 ENSMUST00000142826.3 |
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| CDS-3UTR CAA 90 bp | CCTCCATCAAGAGTACCAAACTGTCAGGGAGAAGGTCCATTAACTGGGTCCCCACCTCAGTGCCAGATTTaGCCAGCAAATGATCAAAGA | + |
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Preference number: 5 (lower is better) Translates to: PPSRVPNCQGEGPLTGSPPQCQI*PANDQR Trigger: TCTTTGATCATTTGCTGGCAAAATCTGGCACTGAGG...TGGGGACCCAGTTAATGGACCTTCTCCCTGACAGTTTGGTACTCTTGATGGAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021770.8 |
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| CDS TCA 90 bp | GTGGTGGAGGAAAAGGTCTCGAAGAAAGTTACAAAGCTCAGCAGCTaGTATGAAACCACTGCTGTCCGCATCGTATTTGCGCCAAATCTG | + |
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Preference number: 5 (lower is better) Translates to: VVEEKVSKKVTKLSS*YETTAVRIVFAPNL Trigger: CAGATTTGGCGCAAATACGATGCGGACAGCAGTGGTTTCATATCAGCTGCTGAGCTTTGTAACTTTCTTCGAGACCTTTTCCTCCACCAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021770.8 |
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| CDS CCA 90 bp | CAGGGGTTTATTTTTAGCCCAAGACACAGTGCCAGCTCAGACTTCTaGATCTTTCCATCCTTGTTGACATCGCAATGGCGAAGCAGAATC | + |
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Preference number: 5 (lower is better) Translates to: QGFIFSPRHSASSDF*IFPSLLTSQWRSRI Trigger: GATTCTGCTTCGCCATTGCGATGTCAACAAGGATGGAAAGATCCAGAAGTCTGAGCTGGCACTGTGTCTTGGGCTAAAAATAAACCCCTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000021770.8 ENSMUST00000142826.3 |
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| CDS-3UTR CAA 90 bp | GGGCCACTCCCTCCATCAAGAGTACCAAACTGTCAGGGAGAAGGTCCATTAACTTCGGAAATGTTCTTTTaGTGGTGGAGGAAAAGGTCT | + |
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Preference number: 5 (lower is better) Translates to: GPLPPSRVPNCQGEGPLTSEMFF*WWRKRS Trigger: AGACCTTTTCCTCCACCACAAAAAGAACATTTCCGA...AGTTAATGGACCTTCTCCCTGACAGTTTGGTACTCTTGATGGAGGGAGTGGCCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021770.8 |
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| CDS-3UTR CAA 90 bp | CAAAGCACAAACACACTTCTCACAGCAGGAACACAGACACTTAAGTGGAGAGCATGGATCTTTCCATCCTaGTTGACATCGCAATGGCGA | + |
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Preference number: 5 (lower is better) Translates to: QSTNTLLTAGTQTLKWRAWIFPS*LTSQWR Trigger: TCGCCATTGCGATGTCAACAAGGATGGAAAGATCCA...TGCTCTCCACTTAAGTGTCTGTGTTCCTGCTGTGAGAAGTGTGTTTGTGCTTTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021770.8 |
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| CDS GCA 90 bp | TCCTTAGAGACGTTGTGGCTGGTCATCAACTGTTCTTTCACTTTCTaGACATTTTCTTCCATAAGAGTGTCCTCAGTGCCAGATTTTGCC | + |
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Preference number: 5 (lower is better) Translates to: SLETLWLVINCSFTF*TFSSIRVSSVPDFA Trigger: GGCAAAATCTGGCACTGAGGACACTCTTATGGAAGAAAATGTGCAGAAAGTGAAAGAACAGTTGATGACCAGCCACAACGTCTCTAAGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021770.8 |
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| CDS CCA 90 bp | CTAGTATACTCTTCCAGTTCAGCCTCGGAAATGTTCTTTTTGTGGTaGAGGAAAAGGTCTCGAAGAAAGTTACAAAGCTCAGCAGCTGAT | + |
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Preference number: 5 (lower is better) Translates to: LVYSSSSASEMFFLW*RKRSRRKLQSSAAD Trigger: ATCAGCTGCTGAGCTTTGTAACTTTCTTCGAGACCTTTTCCTCCACCACAAAAAGAACATTTCCGAGGCTGAACTGGAAGAGTATACTAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021770.8 |
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| CDS-3UTR CAA 90 bp | CCCAAGAGCAAAGCACAAACACACTTCTCACAGCAGGAACACAGACACTTAAGTAGCTCCATCATATCTTaGACAAATCCATCCACTTCT | + |
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Preference number: 5 (lower is better) Translates to: PKSKAQTHFSQQEHRHLSSSIIS*TNPSTS Trigger: AGAAGTGGATGGATTTGTCAAAGATATGATGGAGCT...ACTTAAGTGTCTGTGTTCCTGCTGTGAGAAGTGTGTTTGTGCTTTGCTCTTGGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021770.8 |
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| CDS GCA 90 bp | TTTCTGCACATTTTCTTCCATAAGAGTGTCCTCAGTGCCAGATTTTaGCAGCAAATGATCAAAGAAGGCATCCAGCTCTGTCTCTCTTAT | + |
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Preference number: 5 (lower is better) Translates to: FLHIFFHKSVLSARF*QQMIKEGIQLCLSY Trigger: ATAAGAGAGACAGAGCTGGATGCCTTCTTTGATCATTTGCTGGCAAAATCTGGCACTGAGGACACTCTTATGGAAGAAAATGTGCAGAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021770.8 |
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| CDS CAA 72 bp | CACAGTGCCAGCTCAGACTTCTGGATCTTTCCATCCTaGTTGACATCGCAATGGCGAAGCAGAATCTCCCGG | + |
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Preference number: 6 (lower is better) Translates to: HSASSDFWIFPS*LTSQWRSRISR Trigger: CCGGGAGATTCTGCTTCGCCATTGCGATGTCAACAAGGATGGAAAGATCCAGAAGTCTGAGCTGGCACTGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021770.8 ENSMUST00000142826.3 |
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| CDS CAA 90 bp | AGATCCACACCACTGATGCTGGGCTGGACCAGCTCCATCATATCTTaGACAAATCCATCCACTTCTGGGCCTTCCAGGGCTCCAGTTTTA | + |
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Preference number: 6 (lower is better) Translates to: RSTPLMLGWTSSIIS*TNPSTSGPSRAPVL Trigger: TAAAACTGGAGCCCTGGAAGGCCCAGAAGTGGATGGATTTGTCAAAGATATGATGGAGCTGGTCCAGCCCAGCATCAGTGGTGTGGATCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021770.8 ENSMUST00000142826.3 |
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| CDS CAA 90 bp | AGCCCAAGACACAGTGCCAGCTCAGACTTCTGGATCTTTCCATCCTaGTTGACATCGCAATGGCGAAGCAGAATCTCCCGGAACTTATCC | + |
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Preference number: 6 (lower is better) Translates to: SPRHSASSDFWIFPS*LTSQWRSRISRNLS Trigger: GGATAAGTTCCGGGAGATTCTGCTTCGCCATTGCGATGTCAACAAGGATGGAAAGATCCAGAAGTCTGAGCTGGCACTGTGTCTTGGGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021770.8 ENSMUST00000142826.3 |
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| CDS CAA 90 bp | CCAAGACACAGTGCCAGCTCAGACTTCTGGATCTTTCCATCCTTGTaGACATCGCAATGGCGAAGCAGAATCTCCCGGAACTTATCCAGA | + |
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Preference number: 6 (lower is better) Translates to: PRHSASSDFWIFPSL*TSQWRSRISRNLSR Trigger: TCTGGATAAGTTCCGGGAGATTCTGCTTCGCCATTGCGATGTCAACAAGGATGGAAAGATCCAGAAGTCTGAGCTGGCACTGTGTCTTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021770.8 ENSMUST00000142826.3 |
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| CDS CCA 72 bp | GACTTCTGGATCTTTCCATCCTTGTTGACATCGCAATaGCGAAGCAGAATCTCCCGGAACTTATCCAGATCC | + |
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Preference number: 6 (lower is better) Translates to: DFWIFPSLLTSQ*RSRISRNLSRS Trigger: GGATCTGGATAAGTTCCGGGAGATTCTGCTTCGCCATTGCGATGTCAACAAGGATGGAAAGATCCAGAAGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021770.8 ENSMUST00000142826.3 |
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| CDS CAA 72 bp | AGCTCTTTCATCAGTATGCGGCCTTCCTTAGAGACGTaGTGGCTGGTCATCAACTGTTCTTTCACTTTCTGC | + |
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Preference number: 6 (lower is better) Translates to: SSFISMRPSLET*WLVINCSFTFC Trigger: GCAGAAAGTGAAAGAACAGTTGATGACCAGCCACAACGTCTCTAAGGAAGGCCGCATACTGATGAAAGAGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021770.8 |
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| CDS TCA 72 bp | GAAAAGGTCTCGAAGAAAGTTACAAAGCTCAGCAGCTaGTATGAAACCACTGCTGTCCGCATCGTATTTGCG | + |
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Preference number: 6 (lower is better) Translates to: EKVSKKVTKLSS*YETTAVRIVFA Trigger: CGCAAATACGATGCGGACAGCAGTGGTTTCATATCAGCTGCTGAGCTTTGTAACTTTCTTCGAGACCTTTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021770.8 |
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| CDS CCA 72 bp | CAGCTCCATCATATCTTTGACAAATCCATCCACTTCTaGGCCTTCCAGGGCTCCAGTTTTACTAACATCGTA | + |
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Preference number: 6 (lower is better) Translates to: QLHHIFDKSIHF*AFQGSSFTNIV Trigger: TACGATGTTAGTAAAACTGGAGCCCTGGAAGGCCCAGAAGTGGATGGATTTGTCAAAGATATGATGGAGCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021770.8 ENSMUST00000142826.3 |
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| CDS CAA 72 bp | GCAGCTGATATGAAACCACTGCTGTCCGCATCGTATTaGCGCCAAATCTGCATAAACTCTACACTGTTATCC | + |
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Preference number: 6 (lower is better) Translates to: AADMKPLLSASY*RQICINSTLLS Trigger: GGATAACAGTGTAGAGTTTATGCAGATTTGGCGCAAATACGATGCGGACAGCAGTGGTTTCATATCAGCTGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021770.8 |
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| CDS TCA 72 bp | ATAAGAGTGTCCTCAGTGCCAGATTTTGCCAGCAAATaGTCAAAGAAGGCATCCAGCTCTGTCTCTCTTATG | + |
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Preference number: 6 (lower is better) Translates to: IRVSSVPDFASK*SKKASSSVSLM Trigger: CATAAGAGAGACAGAGCTGGATGCCTTCTTTGATCATTTGCTGGCAAAATCTGGCACTGAGGACACTCTTAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021770.8 |
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| CDS GCA 72 bp | ACGTTGTGGCTGGTCATCAACTGTTCTTTCACTTTCTaGACATTTTCTTCCATAAGAGTGTCCTCAGTGCCA | + |
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Preference number: 6 (lower is better) Translates to: TLWLVINCSFTF*TFSSIRVSSVP Trigger: TGGCACTGAGGACACTCTTATGGAAGAAAATGTGCAGAAAGTGAAAGAACAGTTGATGACCAGCCACAACGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021770.8 |
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| CDS CCA 72 bp | TCTTCCAGTTCAGCCTCGGAAATGTTCTTTTTGTGGTaGAGGAAAAGGTCTCGAAGAAAGTTACAAAGCTCA | + |
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Preference number: 6 (lower is better) Translates to: SSSSASEMFFLW*RKRSRRKLQSS Trigger: TGAGCTTTGTAACTTTCTTCGAGACCTTTTCCTCCACCACAAAAAGAACATTTCCGAGGCTGAACTGGAAGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021770.8 |
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