Pregenerated sensors for SCGB3A2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038791Ensembl transcript IDs: ENSMUST00000043803.13, ENSMUST00000187157.7, ENSMUST00000189750.2
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CTAGACTCCTTAAACTCTGGGACATTCAGTTTACAAATGATAGAATaGGAGATCCAGCCAGCCAGAGTGAGCAAATCCTTCTTTTCATAC | + |
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Preference number: 1 (lower is better) Translates to: LDSLNSGTFSLQMIE*EIQPARVSKSFFSY Trigger: GTATGAAAAGAAGGATTTGCTCACTCTGGCTGGCTGGATCTCTCATTCTATCATTTGTAAACTGAATGTCCCAGAGTTTAAGGAGTCTAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000043803.13 ENSMUST00000187157.7 ENSMUST00000189750.2 |
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| 3UTR CAA 90 bp | TCAAAACTATTTACTCTTAATCTCCTACTTGACATTTTGCTGATGTaGAAGGAAAGACTCGGTGTGTCTTATCTAGGATCCCAAAGCTAT | + |
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Preference number: 2 (lower is better) Translates to: SKLFTLNLLLDILLM*KERLGVSYLGSQSY Trigger: ATAGCTTTGGGATCCTAGATAAGACACACCGAGTCTTTCCTTCAACATCAGCAAAATGTCAAGTAGGAGATTAAGAGTAAATAGTTTTGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043803.13 |
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| CDS-3UTR CCA 90 bp | AGAATGAGAGATCCAGCCAGCCAGAGTGAGCAAATCCTTCTTTTCATACTCCTTGGCCTCGGAAGCCTCTaGTCCCAGCTCGTCCACACA | + |
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Preference number: 4 (lower is better) Translates to: RMRDPASQSEQILLFILLGLGSL*SQLVHT Trigger: TGTGTGGACGAGCTGGGACCAGAGGCTTCCGAGGCC...AAGGAGTATGAAAAGAAGGATTTGCTCACTCTGGCTGGCTGGATCTCTCATTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000043803.13 ENSMUST00000187157.7 ENSMUST00000189750.2 |
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| CDS-3UTR CCA 90 bp | ATCCAGCCAGCCAGAGTGAGCAAATCCTTCTTTTCATACTCCTTCCTTAAATCTGGCCTCGGAAGCCTCTaGTCCCAGCTCGTCCACACA | + |
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Preference number: 4 (lower is better) Translates to: IQPARVSKSFFSYSFLKSGLGSL*SQLVHT Trigger: TGTGTGGACGAGCTGGGACCAGAGGCTTCCGAGGCC...AGATTTAAGGAAGGAGTATGAAAAGAAGGATTTGCTCACTCTGGCTGGCTGGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000043803.13 ENSMUST00000187157.7 ENSMUST00000189750.2 |
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| CDS-3UTR CCA 90 bp | ACAAATGATAGAATGAGAGATCCAGCCAGCCAGAGTGAGCAAATCCTTCTTTTCGGCCTCGGAAGCCTCTaGTCCCAGCTCGTCCACACA | + |
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Preference number: 4 (lower is better) Translates to: TNDRMRDPASQSEQILLFGLGSL*SQLVHT Trigger: TGTGTGGACGAGCTGGGACCAGAGGCTTCCGAGGCC...GAAAAGAAGGATTTGCTCACTCTGGCTGGCTGGATCTCTCATTCTATCATTTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000043803.13 ENSMUST00000187157.7 ENSMUST00000189750.2 |
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| CDS-3UTR TCA 90 bp | ATGAGAGATCCAGCCAGCCAGAGTGAGCAAATCCTTCTTTTCATACTCCTTCCTCTTCAAGGGATCAAATaGGGGAATAATGTCGTCCAA | + |
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Preference number: 4 (lower is better) Translates to: MRDPASQSEQILLFILLPLQGIK*GNNVVQ Trigger: TTGGACGACATTATTCCCTCATTTGATCCCTTGAAG...AGGAAGGAGTATGAAAAGAAGGATTTGCTCACTCTGGCTGGCTGGATCTCTCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000043803.13 ENSMUST00000187157.7 ENSMUST00000189750.2 |
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| CDS-3UTR GCA 90 bp | AGAATGAGAGATCCAGCCAGCCAGAGTGAGCAAATCCTTCTTTTCATACTCCTTGATGTTCTACAGAAATaGCCAGGGTTTTCAGAAGCA | + |
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Preference number: 4 (lower is better) Translates to: RMRDPASQSEQILLFILLDVLQK*PGFSEA Trigger: TGCTTCTGAAAACCCTGGGCATTTCTGTAGAACATC...AAGGAGTATGAAAAGAAGGATTTGCTCACTCTGGCTGGCTGGATCTCTCATTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000043803.13 ENSMUST00000187157.7 ENSMUST00000189750.2 |
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| CDS-3UTR CCA 90 bp | GACATTTTGCTGATGTTGAAGGAAAGACTCGGTGTGTCTTATCTAGGATCCCAAGCTTTTTGGAGTCCCTaGGATATGCACATATCATGG | + |
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Preference number: 4 (lower is better) Translates to: DILLMLKERLGVSYLGSQAFWSP*DMHISW Trigger: CCATGATATGTGCATATCCCAGGGACTCCAAAAAGC...TTGGGATCCTAGATAAGACACACCGAGTCTTTCCTTCAACATCAGCAAAATGTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043803.13 |
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| CDS-3UTR CCA 90 bp | AGAATGAGAGATCCAGCCAGCCAGAGTGAGCAAATCCTTCTTTTCATACTCCTTCAAATGTTTGCTTTTTaGAGTCCCTGGGATATGCAC | + |
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Preference number: 4 (lower is better) Translates to: RMRDPASQSEQILLFILLQMFAF*SPWDMH Trigger: GTGCATATCCCAGGGACTCCAAAAAGCAAACATTTG...AAGGAGTATGAAAAGAAGGATTTGCTCACTCTGGCTGGCTGGATCTCTCATTCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043803.13 |
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| CDS-3UTR TCA 90 bp | ACAAATGATAGAATGAGAGATCCAGCCAGCCAGAGTGAGCAAATCCTTCTTTTCCTTCAAGGGATCAAATaGGGGAATAATGTCGTCCAA | + |
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Preference number: 4 (lower is better) Translates to: TNDRMRDPASQSEQILLFLQGIK*GNNVVQ Trigger: TTGGACGACATTATTCCCTCATTTGATCCCTTGAAG...GAAAAGAAGGATTTGCTCACTCTGGCTGGCTGGATCTCTCATTCTATCATTTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000043803.13 ENSMUST00000187157.7 ENSMUST00000189750.2 |
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| CDS-3UTR GCA 90 bp | ACAAATGATAGAATGAGAGATCCAGCCAGCCAGAGTGAGCAAATCCTTCTTTTCGATGTTCTACAGAAATaGCCAGGGTTTTCAGAAGCA | + |
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Preference number: 4 (lower is better) Translates to: TNDRMRDPASQSEQILLFDVLQK*PGFSEA Trigger: TGCTTCTGAAAACCCTGGGCATTTCTGTAGAACATC...GAAAAGAAGGATTTGCTCACTCTGGCTGGCTGGATCTCTCATTCTATCATTTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000043803.13 ENSMUST00000187157.7 ENSMUST00000189750.2 |
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| CDS-3UTR GCA 90 bp | GATAGAATGAGAGATCCAGCCAGCCAGAGTGAGCAAATCCTTCTTTTCATACTCATAAATGCAAATGTTTaGTTTTTGGAGTCCCTGGGA | + |
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Preference number: 4 (lower is better) Translates to: DRMRDPASQSEQILLFILINANV*FLESLG Trigger: TCCCAGGGACTCCAAAAAGCAAACATTTGCATTTAT...GAGTATGAAAAGAAGGATTTGCTCACTCTGGCTGGCTGGATCTCTCATTCTATC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043803.13 |
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| CDS-3UTR GCA 90 bp | CCAGCCAGAGTGAGCAAATCCTTCTTTTCATACTCCTTCCTTAAATCTCTTTATGATGTTCTACAGAAATaGCCAGGGTTTTCAGAAGCA | + |
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Preference number: 4 (lower is better) Translates to: PARVSKSFFSYSFLKSLYDVLQK*PGFSEA Trigger: TGCTTCTGAAAACCCTGGGCATTTCTGTAGAACATC...ATAAAGAGATTTAAGGAAGGAGTATGAAAAGAAGGATTTGCTCACTCTGGCTGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000043803.13 ENSMUST00000187157.7 ENSMUST00000189750.2 |
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| CDS-3UTR TCA 90 bp | GCCAGAGTGAGCAAATCCTTCTTTTCATACTCCTTCCTTAAATCTCTTTATGAACTTCAAGGGATCAAATaGGGGAATAATGTCGTCCAA | + |
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Preference number: 4 (lower is better) Translates to: ARVSKSFFSYSFLKSLYELQGIK*GNNVVQ Trigger: TTGGACGACATTATTCCCTCATTTGATCCCTTGAAG...TTCATAAAGAGATTTAAGGAAGGAGTATGAAAAGAAGGATTTGCTCACTCTGGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000043803.13 ENSMUST00000187157.7 ENSMUST00000189750.2 |
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| CDS-3UTR CAA 90 bp | ACAAATGATAGAATGAGAGATCCAGCCAGCCAGAGTGAGCAAATCCTTCTTTTCACAACAGGGAGACGGTaGATGAGAAGGGCAGTGGCA | + |
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Preference number: 5 (lower is better) Translates to: TNDRMRDPASQSEQILLFTTGRR*MRRAVA Trigger: TGCCACTGCCCTTCTCATCAACCGTCTCCCTGTTGT...GAAAAGAAGGATTTGCTCACTCTGGCTGGCTGGATCTCTCATTCTATCATTTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000043803.13 ENSMUST00000187157.7 ENSMUST00000189750.2 |
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| CDS GCA 90 bp | CGTCCACACACTTCTTCAGTCCTGTCACCAGATGTTCTACAGAAATaGCCAGGGTTTTCAGAAGCATCTTCAAGGGATCAAATGAGGGAA | + |
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Preference number: 5 (lower is better) Translates to: RPHTSSVLSPDVLQK*PGFSEASSRDQMRE Trigger: TTCCCTCATTTGATCCCTTGAAGATGCTTCTGAAAACCCTGGGCATTTCTGTAGAACATCTGGTGACAGGACTGAAGAAGTGTGTGGACG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000043803.13 ENSMUST00000187157.7 ENSMUST00000189750.2 |
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| CDS-3UTR CAA 90 bp | CCAGCCAGAGTGAGCAAATCCTTCTTTTCATACTCCTTCCTTAAATCTCTTTATACAACAGGGAGACGGTaGATGAGAAGGGCAGTGGCA | + |
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Preference number: 5 (lower is better) Translates to: PARVSKSFFSYSFLKSLYTTGRR*MRRAVA Trigger: TGCCACTGCCCTTCTCATCAACCGTCTCCCTGTTGT...ATAAAGAGATTTAAGGAAGGAGTATGAAAAGAAGGATTTGCTCACTCTGGCTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000043803.13 ENSMUST00000187157.7 ENSMUST00000189750.2 |
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| CDS-3UTR CAA 90 bp | GCCAGAGTGAGCAAATCCTTCTTTTCATACTCCTTCCTTAAATCTCTTTATGAAACAACAGGGAGACGGTaGATGAGAAGGGCAGTGGCA | + |
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Preference number: 5 (lower is better) Translates to: ARVSKSFFSYSFLKSLYETTGRR*MRRAVA Trigger: TGCCACTGCCCTTCTCATCAACCGTCTCCCTGTTGT...TTCATAAAGAGATTTAAGGAAGGAGTATGAAAAGAAGGATTTGCTCACTCTGGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000043803.13 ENSMUST00000187157.7 ENSMUST00000189750.2 |
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| CDS-3UTR CAA 90 bp | GATAGAATGAGAGATCCAGCCAGCCAGAGTGAGCAAATCCTTCTTTTCATACTCGCAAATGTTTGCTTTTaGGAGTCCCTGGGATATGCA | + |
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Preference number: 5 (lower is better) Translates to: DRMRDPASQSEQILLFILANVCF*ESLGYA Trigger: TGCATATCCCAGGGACTCCAAAAAGCAAACATTTGC...GAGTATGAAAAGAAGGATTTGCTCACTCTGGCTGGCTGGATCTCTCATTCTATC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043803.13 |
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| CDS-3UTR CAA 90 bp | ATCCAGCCAGCCAGAGTGAGCAAATCCTTCTTTTCATACTCCTTCCTTAAATCTTATAAATGCAAATGTTaGCTTTTTGGAGTCCCTGGG | + |
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Preference number: 5 (lower is better) Translates to: IQPARVSKSFFSYSFLKSYKCKC*LFGVPG Trigger: CCCAGGGACTCCAAAAAGCAAACATTTGCATTTATA...AGATTTAAGGAAGGAGTATGAAAAGAAGGATTTGCTCACTCTGGCTGGCTGGAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043803.13 |
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| CDS CCA 72 bp | AGCCTCCAGAAGCTTCTTCACGGCCTCGGAAGCCTCTaGTCCCAGCTCGTCCACACACTTCTTCAGTCCTGT | + |
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Preference number: 6 (lower is better) Translates to: SLQKLLHGLGSL*SQLVHTLLQSC Trigger: ACAGGACTGAAGAAGTGTGTGGACGAGCTGGGACCAGAGGCTTCCGAGGCCGTGAAGAAGCTTCTGGAGGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000187157.7 |
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| CDS GCA 72 bp | ACTTCTTCAGTCCTGTCACCAGATGTTCTACAGAAATaGCCAGGGTTTTCAGAAGCATCTTCAAGGGATCAA | + |
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Preference number: 6 (lower is better) Translates to: TSSVLSPDVLQK*PGFSEASSRDQ Trigger: TTGATCCCTTGAAGATGCTTCTGAAAACCCTGGGCATTTCTGTAGAACATCTGGTGACAGGACTGAAGAAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000043803.13 ENSMUST00000187157.7 ENSMUST00000189750.2 |
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