RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SCGB3A1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000064057

Ensembl transcript IDs: ENSMUST00000043873.10, ENSMUST00000076006.5

Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CAA 90 bp GGTACAGAGGAAGGAGAAAGGTGTGAGCAGCAGGGTTTCCAGCTCTaGTTAAAGAAAAATATCTCGTCAGGCATCTCGTCAGGCAGAATT +
Preference number: 2 (lower is better)
Translates to: GTEEGERCEQQGFQL*LKKNISSGISSGRI
Trigger: AATTCTGCCTGACGAGATGCCTGACGAGATATTTTTCTTTAACAAGAGCTGGAAACCCTGCTGCTCACACCTTTCTCCTTCCTCTGTACC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043873.10
ENSMUST00000076006.5
CDS-3UTR CCA 90 bp GCAGGGTTTCCAGCTCTTGTTAAAGAAAAATATCTCGTCAGGCATCTCGTCAGGCACAGCCTCTGCAGCTaGAGCAAGGGCGGCCACGGG +
Preference number: 4 (lower is better)
Translates to: AGFPALVKEKYLVRHLVRHSLCS*SKGGHG
Trigger: CCCGTGGCCGCCCTTGCTCCAGCTGCAGAGGCTGTG...CCTGACGAGATGCCTGACGAGATATTTTTCTTTAACAAGAGCTGGAAACCCTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043873.10
ENSMUST00000076006.5
CDS-3UTR CCA 90 bp CAGGGTTTCCAGCTCTTGTTAAAGAAAAATATCTCGTCAGGCATCTCGTCAGGCCACAGCCTCTGCAGCTaGAGCAAGGGCGGCCACGGG +
Preference number: 4 (lower is better)
Translates to: QGFQLLLKKNISSGISSGHSLCS*SKGGHG
Trigger: CCCGTGGCCGCCCTTGCTCCAGCTGCAGAGGCTGTG...GCCTGACGAGATGCCTGACGAGATATTTTTCTTTAACAAGAGCTGGAAACCCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043873.10
ENSMUST00000076006.5
CDS-3UTR GCA 90 bp GGTTTCCAGCTCTTGTTAAAGAAAAATATCTCGTCAGGCATCTCGTCAGGCAGACCCTGCCACAGCCTCTaGAGCTGGAGCAAGGGCGGC +
Preference number: 4 (lower is better)
Translates to: GFQLLLKKNISSGISSGRPCHSL*SWSKGG
Trigger: GCCGCCCTTGCTCCAGCTGCAGAGGCTGTGGCAGGG...TCTGCCTGACGAGATGCCTGACGAGATATTTTTCTTTAACAAGAGCTGGAAACC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043873.10
ENSMUST00000076006.5
CDS-3UTR GCA 90 bp TGTGAGCAGCAGGGTTTCCAGCTCTTGTTAAAGAAAAATATCTCGTCAGGCATCGCTAGGCACAGCCCCTaGCACAGCCTCTGCAGCTGG +
Preference number: 4 (lower is better)
Translates to: CEQQGFQLLLKKNISSGIARHSP*HSLCSW
Trigger: CCAGCTGCAGAGGCTGTGGCAGGGGCTGTGCCTAGC...GATGCCTGACGAGATATTTTTCTTTAACAAGAGCTGGAAACCCTGCTGCTCACA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043873.10
ENSMUST00000076006.5
CDS-3UTR GCA 90 bp CAGCAGGGTTTCCAGCTCTTGTTAAAGAAAAATATCTCGTCAGGCATCTCGTCAGCTAGGCACAGCCCCTaGCACAGCCTCTGCAGCTGG +
Preference number: 4 (lower is better)
Translates to: QQGFQLLLKKNISSGISSARHSP*HSLCSW
Trigger: CCAGCTGCAGAGGCTGTGGCAGGGGCTGTGCCTAGC...TGACGAGATGCCTGACGAGATATTTTTCTTTAACAAGAGCTGGAAACCCTGCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043873.10
ENSMUST00000076006.5
CDS-3UTR GCA 90 bp TTGTTAAAGAAAAATATCTCGTCAGGCATCTCGTCAGGCAGAATTTTCCCAGGTCCCTGCCACAGCCTCTaGAGCTGGAGCAAGGGCGGC +
Preference number: 4 (lower is better)
Translates to: LLKKNISSGISSGRIFPGPCHSL*SWSKGG
Trigger: GCCGCCCTTGCTCCAGCTGCAGAGGCTGTGGCAGGG...ACCTGGGAAAATTCTGCCTGACGAGATGCCTGACGAGATATTTTTCTTTAACAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043873.10
ENSMUST00000076006.5
CDS-3UTR TCA 90 bp TGTGAGCAGCAGGGTTTCCAGCTCTTGTTAAAGAAAAATATCTCGTCAGGCATCCAGGACCCCCAGCAGTaGCTTCACAGCTCCTACAGC +
Preference number: 4 (lower is better)
Translates to: CEQQGFQLLLKKNISSGIQDPQQ*LHSSYS
Trigger: GCTGTAGGAGCTGTGAAGTCACTGCTGGGGGTCCTG...GATGCCTGACGAGATATTTTTCTTTAACAAGAGCTGGAAACCCTGCTGCTCACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000043873.10
ENSMUST00000076006.5
CDS-3UTR TCA 90 bp AGGTGTGAGCAGCAGGGTTTCCAGCTCTTGTTAAAGAAAAATATCTCGTCAGGCCAACACCAGAGTCACTaGGCAGAGCCACACAGAGCA +
Preference number: 4 (lower is better)
Translates to: RCEQQGFQLLLKKNISSGQHQSH*AEPHRA
Trigger: TGCTCTGTGTGGCTCTGCTCAGTGACTCTGGTGTTG...GCCTGACGAGATATTTTTCTTTAACAAGAGCTGGAAACCCTGCTGCTCACACCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000043873.10
CDS-3UTR TCA 90 bp CAGCAGGGTTTCCAGCTCTTGTTAAAGAAAAATATCTCGTCAGGCATCTCGTCACCATGCTGGCCAGGATaGACCTCAGGATGGCCAAGT +
Preference number: 4 (lower is better)
Translates to: QQGFQLLLKKNISSGISSPCWPG*TSGWPS
Trigger: ACTTGGCCATCCTGAGGTTCATCCTGGCCAGCATGG...TGACGAGATGCCTGACGAGATATTTTTCTTTAACAAGAGCTGGAAACCCTGCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043873.10
ENSMUST00000076006.5
CDS-3UTR TCA 90 bp GAAAGGTGTGAGCAGCAGGGTTTCCAGCTCTTGTTAAAGAAAAATATCTCGTCACAGGACCCCCAGCAGTaGCTTCACAGCTCCTACAGC +
Preference number: 4 (lower is better)
Translates to: ERCEQQGFQLLLKKNISSQDPQQ*LHSSYS
Trigger: GCTGTAGGAGCTGTGAAGTCACTGCTGGGGGTCCTG...TGACGAGATATTTTTCTTTAACAAGAGCTGGAAACCCTGCTGCTCACACCTTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000043873.10
ENSMUST00000076006.5
CDS-3UTR TCA 90 bp GCAGGGTTTCCAGCTCTTGTTAAAGAAAAATATCTCGTCAGGCATCTCGTCAGGCGCAGGCTTGGCCAATaGGTCCATGAAGAAAGCAAC +
Preference number: 4 (lower is better)
Translates to: AGFPALVKEKYLVRHLVRRRLGQ*VHEESN
Trigger: GTTGCTTTCTTCATGGACTCATTGGCCAAGCCTGCG...CCTGACGAGATGCCTGACGAGATATTTTTCTTTAACAAGAGCTGGAAACCCTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043873.10
ENSMUST00000076006.5
CDS-3UTR TCA 90 bp CTTGTTAAAGAAAAATATCTCGTCAGGCATCTCGTCAGGCAGAATTTTCCCAGGCCATGCTGGCCAGGATaGACCTCAGGATGGCCAAGT +
Preference number: 4 (lower is better)
Translates to: LVKEKYLVRHLVRQNFPRPCWPG*TSGWPS
Trigger: ACTTGGCCATCCTGAGGTTCATCCTGGCCAGCATGG...CCTGGGAAAATTCTGCCTGACGAGATGCCTGACGAGATATTTTTCTTTAACAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043873.10
ENSMUST00000076006.5
CDS-3UTR TCA 90 bp GGAGAAAGGTGTGAGCAGCAGGGTTTCCAGCTCTTGTTAAAGAAAAATATCTCGTGGCCAATGAGTCCATaGAGAAAGCAACACTGTGCC +
Preference number: 4 (lower is better)
Translates to: GERCEQQGFQLLLKKNISWPMSP*RKQHCA
Trigger: GGCACAGTGTTGCTTTCTTCATGGACTCATTGGCCA...CGAGATATTTTTCTTTAACAAGAGCTGGAAACCCTGCTGCTCACACCTTTCTCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000076006.5
CDS-3UTR GCA 90 bp CAGGGTTTCCAGCTCTTGTTAAAGAAAAATATCTCGTCAGGCATCTCGTCAGGCAAGAAAGCAACACTGTaGCTTGCTGATTGTGGGGAC +
Preference number: 4 (lower is better)
Translates to: QGFQLLLKKNISSGISSGKKATL*LADCGD
Trigger: GTCCCCACAATCAGCAAGGCACAGTGTTGCTTTCTT...GCCTGACGAGATGCCTGACGAGATATTTTTCTTTAACAAGAGCTGGAAACCCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000076006.5
3UTR CAA 72 bp GAAGGAGAAAGGTGTGAGCAGCAGGGTTTCCAGCTCTaGTTAAAGAAAAATATCTCGTCAGGCATCTCGTCA +
Preference number: 4 (lower is better)
Translates to: EGERCEQQGFQL*LKKNISSGISS
Trigger: TGACGAGATGCCTGACGAGATATTTTTCTTTAACAAGAGCTGGAAACCCTGCTGCTCACACCTTTCTCCTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043873.10
ENSMUST00000076006.5
CDS-3UTR TCA 90 bp GAAGGAGAAAGGTGTGAGCAGCAGGGTTTCCAGCTCTTGTTAAAGAAAAATATCTGGCCAATGAGTCCATaGAGAAAGCAACACCAGAGT +
Preference number: 4 (lower is better)
Translates to: EGERCEQQGFQLLLKKNIWPMSP*RKQHQS
Trigger: ACTCTGGTGTTGCTTTCTTCATGGACTCATTGGCCA...GATATTTTTCTTTAACAAGAGCTGGAAACCCTGCTGCTCACACCTTTCTCCTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000043873.10
CDS TCA 90 bp AGCTGGAGCAAGGGCGGCCACGGGTTCTACCGCAGGCTTGGCCAATaGGTCCATGAAGAAAGCAACACCAGAGTCACTGAGCAGAGCCAC +
Preference number: 5 (lower is better)
Translates to: SWSKGGHGFYRRLGQ*VHEESNTRVTEQSH
Trigger: GTGGCTCTGCTCAGTGACTCTGGTGTTGCTTTCTTCATGGACTCATTGGCCAAGCCTGCGGTAGAACCCGTGGCCGCCCTTGCTCCAGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043873.10
CDS CCA 90 bp AATGGGATGCCCATGCTGGCCAGGATGAACCTCAGGATGGCCAAGTaGCTTAATGGTAGGCTAGGCACAGCCCCTGCCACAGCCTCTGCA +
Preference number: 5 (lower is better)
Translates to: NGMPMLARMNLRMAK*LNGRLGTAPATASA
Trigger: TGCAGAGGCTGTGGCAGGGGCTGTGCCTAGCCTACCATTAAGCCACTTGGCCATCCTGAGGTTCATCCTGGCCAGCATGGGCATCCCATT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043873.10
ENSMUST00000076006.5
CDS CCA 90 bp CAGCTCGGTGACACACTTCCTGGATCCCTCTATGAGAGGATCCAATaGGATGCCCATGCTGGCCAGGATGAACCTCAGGATGGCCAAGTG +
Preference number: 5 (lower is better)
Translates to: QLGDTLPGSLYERIQ*DAHAGQDEPQDGQV
Trigger: CACTTGGCCATCCTGAGGTTCATCCTGGCCAGCATGGGCATCCCATTGGATCCTCTCATAGAGGGATCCAGGAAGTGTGTCACCGAGCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043873.10
ENSMUST00000076006.5
CDS-3UTR CAA 90 bp AGGTGTGAGCAGCAGGGTTTCCAGCTCTTGTTAAAGAAAAATATCTCGTCAGGCGGTTCTACCGCAGGCTaGGCCAATGAGTCCATGAAG +
Preference number: 5 (lower is better)
Translates to: RCEQQGFQLLLKKNISSGGSTAG*ANESMK
Trigger: CTTCATGGACTCATTGGCCAAGCCTGCGGTAGAACC...GCCTGACGAGATATTTTTCTTTAACAAGAGCTGGAAACCCTGCTGCTCACACCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043873.10
ENSMUST00000076006.5
CDS-3UTR CAA 90 bp CAGCAGGGTTTCCAGCTCTTGTTAAAGAAAAATATCTCGTCAGGCATCTCGTCAGGTTCTACCGCAGGCTaGGCCAATGAGTCCATGAAG +
Preference number: 5 (lower is better)
Translates to: QQGFQLLLKKNISSGISSGSTAG*ANESMK
Trigger: CTTCATGGACTCATTGGCCAAGCCTGCGGTAGAACC...TGACGAGATGCCTGACGAGATATTTTTCTTTAACAAGAGCTGGAAACCCTGCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043873.10
ENSMUST00000076006.5
CDS CAA 90 bp GCCTCTGCAGCTGGAGCAAGGGCGGCCACGGGTTCTACCGCAGGCTaGGCCAATGAGTCCATGAAGAAAGCAACACCAGAGTCACTGAGC +
Preference number: 6 (lower is better)
Translates to: ASAAGARAATGSTAG*ANESMKKATPESLS
Trigger: GCTCAGTGACTCTGGTGTTGCTTTCTTCATGGACTCATTGGCCAAGCCTGCGGTAGAACCCGTGGCCGCCCTTGCTCCAGCTGCAGAGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043873.10
CDS CCA 72 bp CCCATGCTGGCCAGGATGAACCTCAGGATGGCCAAGTaGCTTAATGGTAGGCTAGGCACAGCCCCTGCCACA +
Preference number: 6 (lower is better)
Translates to: PMLARMNLRMAK*LNGRLGTAPAT
Trigger: TGTGGCAGGGGCTGTGCCTAGCCTACCATTAAGCCACTTGGCCATCCTGAGGTTCATCCTGGCCAGCATGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043873.10
ENSMUST00000076006.5
CDS CAA 72 bp GCTGGAGCAAGGGCGGCCACGGGTTCTACCGCAGGCTaGGCCAATGAGTCCATGAAGAAAGCAACACTGTGC +
Preference number: 6 (lower is better)
Translates to: AGARAATGSTAG*ANESMKKATLC
Trigger: GCACAGTGTTGCTTTCTTCATGGACTCATTGGCCAAGCCTGCGGTAGAACCCGTGGCCGCCCTTGCTCCAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000076006.5
CDS TCA 72 bp AAGGGCGGCCACGGGTTCTACCGCAGGCTTGGCCAATaGGTCCATGAAGAAAGCAACACCAGAGTCACTGAG +
Preference number: 6 (lower is better)
Translates to: KGGHGFYRRLGQ*VHEESNTRVTE
Trigger: CTCAGTGACTCTGGTGTTGCTTTCTTCATGGACTCATTGGCCAAGCCTGCGGTAGAACCCGTGGCCGCCCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043873.10
CDS CCA 72 bp GACACACTTCCTGGATCCCTCTATGAGAGGATCCAATaGGATGCCCATGCTGGCCAGGATGAACCTCAGGAT +
Preference number: 6 (lower is better)
Translates to: DTLPGSLYERIQ*DAHAGQDEPQD
Trigger: ATCCTGAGGTTCATCCTGGCCAGCATGGGCATCCCATTGGATCCTCTCATAGAGGGATCCAGGAAGTGTGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043873.10
ENSMUST00000076006.5