Pregenerated sensors for SCGB2B7 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000094053Ensembl transcript IDs: ENSMUST00000178258.3
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ATCAGGAATCCAACTTCAGGAGAGAAAAAGGACAGGTCAGCAAGGTaGCACTTGGATCAGACATGTTGCAAAGATGGGTGCCCAAAACAC | + |
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Preference number: 1 (lower is better) Translates to: IRNPTSGEKKDRSAR*HLDQTCCKDGCPKH Trigger: GTGTTTTGGGCACCCATCTTTGCAACATGTCTGATCCAAGTGCCACCTTGCTGACCTGTCCTTTTTCTCTCCTGAAGTTGGATTCCTGAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000178258.3 |
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| 3UTR CCA 90 bp | ATCCAACTTCAGGAGAGAAAAAGGACAGGTCAGCAAGGTGGCACTTaGATCAGACATGTTGCAAAGATGGGTGCCCAAAACACATTAACA | + |
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Preference number: 1 (lower is better) Translates to: IQLQERKRTGQQGGT*IRHVAKMGAQNTLT Trigger: TGTTAATGTGTTTTGGGCACCCATCTTTGCAACATGTCTGATCCAAGTGCCACCTTGCTGACCTGTCCTTTTTCTCTCCTGAAGTTGGAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000178258.3 |
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| 3UTR CAA 90 bp | AATCCAACTTCAGGAGAGAAAAAGGACAGGTCAGCAAGGTGGCACTaGGATCAGACATGTTGCAAAGATGGGTGCCCAAAACACATTAAC | + |
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Preference number: 2 (lower is better) Translates to: NPTSGEKKDRSARWH*DQTCCKDGCPKHIN Trigger: GTTAATGTGTTTTGGGCACCCATCTTTGCAACATGTCTGATCCAAGTGCCACCTTGCTGACCTGTCCTTTTTCTCTCCTGAAGTTGGATT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000178258.3 |
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| CDS-3UTR TCA 90 bp | CAACTTCAGGAGAGAAAAAGGACAGGTCAGCAAGGTGGCACTTGGATCAGACATCCACACCCTACTTCCTaGGAGAACACTTGCATAGGC | + |
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Preference number: 4 (lower is better) Translates to: QLQERKRTGQQGGTWIRHPHPTS*ENTCIG Trigger: GCCTATGCAAGTGTTCTCTCAGGAAGTAGGGTGTGG...ATGTCTGATCCAAGTGCCACCTTGCTGACCTGTCCTTTTTCTCTCCTGAAGTTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000178258.3 |
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| 3UTR CAA 72 bp | TCAGGAGAGAAAAAGGACAGGTCAGCAAGGTGGCACTaGGATCAGACATGTTGCAAAGATGGGTGCCCAAAA | + |
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Preference number: 4 (lower is better) Translates to: SGEKKDRSARWH*DQTCCKDGCPK Trigger: TTTTGGGCACCCATCTTTGCAACATGTCTGATCCAAGTGCCACCTTGCTGACCTGTCCTTTTTCTCTCCTGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000178258.3 |
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| CDS-3UTR GCA 90 bp | GAATCCAACTTCAGGAGAGAAAAAGGACAGGTCAGCAAGGTGGCACTTGGATCAAAAGAAAGGAAAACATaGTTCTGTTGTCTGGAAGCT | + |
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Preference number: 4 (lower is better) Translates to: ESNFRREKGQVSKVALGSKERKT*FCCLEA Trigger: AGCTTCCAGACAACAGAAGCATGTTTTCCTTTCTTT...TGATCCAAGTGCCACCTTGCTGACCTGTCCTTTTTCTCTCCTGAAGTTGGATTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000178258.3 |
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| CDS-3UTR CAA 90 bp | GGAATCCAACTTCAGGAGAGAAAAAGGACAGGTCAGCAAGGTGGCACTTGGATCGAATGCCTGGAGTTCTaGATACAACCACACCCTACT | + |
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Preference number: 5 (lower is better) Translates to: GIQLQERKRTGQQGGTWIECLEF*IQPHPT Trigger: AGTAGGGTGTGGTTGTATCAAGAACTCCAGGCATTC...GATCCAAGTGCCACCTTGCTGACCTGTCCTTTTTCTCTCCTGAAGTTGGATTCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000178258.3 |
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| CDS-3UTR CAA 90 bp | AAAAAGGACAGGTCAGCAAGGTGGCACTTGGATCAGACATGTTGCAAAGATGGGGAAAACATGCTTCTGTaGTCTGGAAGCTCAGTTCTC | + |
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Preference number: 5 (lower is better) Translates to: KKDRSARWHLDQTCCKDGENMLL*SGSSVL Trigger: GAGAACTGAGCTTCCAGACAACAGAAGCATGTTTTC...CCCATCTTTGCAACATGTCTGATCCAAGTGCCACCTTGCTGACCTGTCCTTTTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000178258.3 |
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| CDS-3UTR CAA 90 bp | CTGAATGATGAAGGAACAGTATCAGGAATCCAACTTCAGGAGAGAAAAAGGACATTCCTGAGAGAACACTaGCATAGGCTTCAAAGAAAG | + |
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Preference number: 5 (lower is better) Translates to: LNDEGTVSGIQLQERKRTFLREH*HRLQRK Trigger: CTTTCTTTGAAGCCTATGCAAGTGTTCTCTCAGGAA...TGTCCTTTTTCTCTCCTGAAGTTGGATTCCTGATACTGTTCCTTCATCATTCAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000178258.3 |
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| CDS GCA 72 bp | TTCCAAGGCCACCTTTTCCTCTGCAGTAGCATCGAATaGCTGGAGTTCTTGATACAACCACACCCTACTTCC | + |
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Preference number: 6 (lower is better) Translates to: FQGHLFLCSSIE*LEFLIQPHPTS Trigger: GGAAGTAGGGTGTGGTTGTATCAAGAACTCCAGGCATTCGATGCTACTGCAGAGGAAAAGGTGGCCTTGGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178258.3 |
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| CDS TCA 72 bp | TGCCTGGAGTTCTTGATACAACCACACCCTACTTCCTaGGAGAACACTTGCATAGGCTTCAAAGAAAGGAAA | + |
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Preference number: 6 (lower is better) Translates to: CLEFLIQPHPTS*ENTCIGFKERK Trigger: TTTCCTTTCTTTGAAGCCTATGCAAGTGTTCTCTCAGGAAGTAGGGTGTGGTTGTATCAAGAACTCCAGGCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178258.3 |
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| CDS CAA 72 bp | CTTGATACAACCACACCCTACTTCCTGAGAGAACACTaGCATAGGCTTCAAAGAAAGGAAAACATGCTTCTG | + |
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Preference number: 6 (lower is better) Translates to: LDTTTPYFLREH*HRLQRKENMLL Trigger: CAGAAGCATGTTTTCCTTTCTTTGAAGCCTATGCAAGTGTTCTCTCAGGAAGTAGGGTGTGGTTGTATCAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178258.3 |
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