RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SCGB2B27 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000066584

Ensembl transcript IDs: ENSMUST00000085620.9, ENSMUST00000185399.2

Found 32 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp AGACTCTGCCTAAAGGGAACTGGAGCTCATCCACAGCCTGAAAGCTaGCATAGCCAGGCAGGGAAGACCGGGAGAAGGTTCTGGAAGGCA +
Preference number: 1 (lower is better)
Translates to: RLCLKGTGAHPQPES*HSQAGKTGRRFWKA
Trigger: TGCCTTCCAGAACCTTCTCCCGGTCTTCCCTGCCTGGCTATGGCAGCTTTCAGGCTGTGGATGAGCTCCAGTTCCCTTTAGGCAGAGTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185399.2
3UTR GCA 90 bp GAAAGAAAATCCCATGAGGTGATTCAGGTCTCCAGCAACAGACTCTaGCTAAAGGGAACTGGAGCTCATCCACAGCCTGAAAGCTGCCAT +
Preference number: 1 (lower is better)
Translates to: ERKSHEVIQVSSNRL*LKGTGAHPQPESCH
Trigger: ATGGCAGCTTTCAGGCTGTGGATGAGCTCCAGTTCCCTTTAGGCAGAGTCTGTTGCTGGAGACCTGAATCACCTCATGGGATTTTCTTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000185399.2
3UTR CCA 90 bp GTCAGGAATCCAACTTCAGGAGAGAAAGAGGACAGGTCAGCAAGATaGCACTTGGATCAGACACATTGCAACGATGGGTTGGCTATAAAC +
Preference number: 1 (lower is better)
Translates to: VRNPTSGEKEDRSAR*HLDQTHCNDGLAIN
Trigger: GTTTATAGCCAACCCATCGTTGCAATGTGTCTGATCCAAGTGCCATCTTGCTGACCTGTCCTCTTTCTCTCCTGAAGTTGGATTCCTGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085620.9
ENSMUST00000185399.2
3UTR-3UTR TCA 90 bp AGGTCAGCAAGATGGCACTTGGATCAGACACATTGCAACGATGGGTTGGCTATAGGAAAGAAAATCCCATaGGGTGATTCAGGTCTCCAG +
Preference number: 2 (lower is better)
Translates to: RSARWHLDQTHCNDGLAIGKKIP*GDSGLQ
Trigger: CTGGAGACCTGAATCACCTCATGGGATTTTCTTTCC...TATAGCCAACCCATCGTTGCAATGTGTCTGATCCAAGTGCCATCTTGCTGACCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000185399.2
3UTR-3UTR GCA 90 bp AGGTCAGCAAGATGGCACTTGGATCAGACACATTGCAACGATGGGTTGGCTATAATCTTCGGGATAGTATaGCTTGCATTCAGAGCTGAA +
Preference number: 2 (lower is better)
Translates to: RSARWHLDQTHCNDGLAIIFGIV*LAFRAE
Trigger: TTCAGCTCTGAATGCAAGGCATACTATCCCGAAGAT...TATAGCCAACCCATCGTTGCAATGTGTCTGATCCAAGTGCCATCTTGCTGACCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185399.2
3UTR-3UTR CCA 90 bp CACAGGTGTCAGGAATCCAACTTCAGGAGAGAAAGAGGACAGGTCAGCAAGATGGACACATTGCAACGATaGGTTGGCTATAAACCATTA +
Preference number: 2 (lower is better)
Translates to: HRCQESNFRRERGQVSKMDTLQR*VGYKPL
Trigger: TAATGGTTTATAGCCAACCCATCGTTGCAATGTGTC...CATCTTGCTGACCTGTCCTCTTTCTCTCCTGAAGTTGGATTCCTGACACCTGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085620.9
ENSMUST00000185399.2
3UTR-3UTR CCA 90 bp GCAAGATGGCACTTGGATCAGACACATTGCAACGATGGGTTGGCTATAAACCATGACACATTGCAACGATaGGTTGGCTATAAACCATTA +
Preference number: 2 (lower is better)
Translates to: ARWHLDQTHCNDGLAINHDTLQR*VGYKPL
Trigger: TAATGGTTTATAGCCAACCCATCGTTGCAATGTGTC...ATGGTTTATAGCCAACCCATCGTTGCAATGTGTCTGATCCAAGTGCCATCTTGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085620.9
ENSMUST00000185399.2
3UTR GCA 72 bp GGAGACAGACAGGGAGAGAGCTGGCTACAGGCAAGGTaGAGGAGCTCAGCAGGCTCCCCAAGCACACACAGA +
Preference number: 3 (lower is better)
Translates to: GDRQGESWLQAR*RSSAGSPSTHR
Trigger: TCTGTGTGTGCTTGGGGAGCCTGCTGAGCTCCTGCACCTTGCCTGTAGCCAGCTCTCTCCCTGTCTGTCTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000185399.2
3UTR GCA 72 bp TCCCATGAGGTGATTCAGGTCTCCAGCAACAGACTCTaGCTAAAGGGAACTGGAGCTCATCCACAGCCTGAA +
Preference number: 3 (lower is better)
Translates to: SHEVIQVSSNRL*LKGTGAHPQPE
Trigger: TTCAGGCTGTGGATGAGCTCCAGTTCCCTTTAGGCAGAGTCTGTTGCTGGAGACCTGAATCACCTCATGGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185399.2
3UTR CCA 72 bp CCAACTTCAGGAGAGAAAGAGGACAGGTCAGCAAGATaGCACTTGGATCAGACACATTGCAACGATGGGTTG +
Preference number: 3 (lower is better)
Translates to: PTSGEKEDRSAR*HLDQTHCNDGL
Trigger: CAACCCATCGTTGCAATGTGTCTGATCCAAGTGCCATCTTGCTGACCTGTCCTCTTTCTCTCCTGAAGTTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085620.9
ENSMUST00000185399.2
3UTR TCA 72 bp AGAGACTGCTCTTCATCCACAGGAAAGAAAATCCCATaGGGTGATTCAGGTCTCCAGCAACAGACTCTGCCT +
Preference number: 3 (lower is better)
Translates to: RDCSSSTGKKIP*GDSGLQQQTLP
Trigger: AGGCAGAGTCTGTTGCTGGAGACCTGAATCACCTCATGGGATTTTCTTTCCTGTGGATGAAGAGCAGTCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000185399.2
3UTR-3UTR CAA 90 bp AGAGAAAGAGGACAGGTCAGCAAGATGGCACTTGGATCAGACACATTGCAACGATCAGCAAGATGGCACTaGGATCAGACACATTGCAAC +
Preference number: 3 (lower is better)
Translates to: RERGQVSKMALGSDTLQRSARWH*DQTHCN
Trigger: GTTGCAATGTGTCTGATCCAAGTGCCATCTTGCTGA...TCGTTGCAATGTGTCTGATCCAAGTGCCATCTTGCTGACCTGTCCTCTTTCTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085620.9
ENSMUST00000185399.2
3UTR GCA 72 bp CATCTGCAGGCATTTATTAGAATCAGCCTAAGAGACTaGAGGATGAGGGCACAGGTGTCAGGAATCCAACTT +
Preference number: 3 (lower is better)
Translates to: HLQAFIRISLRD*RMRAQVSGIQL
Trigger: AAGTTGGATTCCTGACACCTGTGCCCTCATCCTGCAGTCTCTTAGGCTGATTCTAATAAATGCCTGCAGATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000085620.9
3UTR-3UTR CAA 90 bp TTCAGAGCTGAAGAGTATAGACATCTAGAAAACAAGGAGACAGACAGGGAGAGATCAGCAAGATGGCACTaGGATCAGACACATTGCAAC +
Preference number: 3 (lower is better)
Translates to: FRAEEYRHLENKETDRERSARWH*DQTHCN
Trigger: GTTGCAATGTGTCTGATCCAAGTGCCATCTTGCTGA...TCTCTCCCTGTCTGTCTCCTTGTTTTCTAGATGTCTATACTCTTCAGCTCTGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000185399.2
CDS-3UTR GCA 90 bp ACAGGTCAGCAAGATGGCACTTGGATCAGACACATTGCAACGATGGGTTGGCTAGGCCACCCTTTCCGCTaGAGTAGCTTGAAACATCGA +
Preference number: 4 (lower is better)
Translates to: TGQQDGTWIRHIATMGWLGHPFR*SSLKHR
Trigger: TCGATGTTTCAAGCTACTGCAGCGGAAAGGGTGGCC...TAGCCAACCCATCGTTGCAATGTGTCTGATCCAAGTGCCATCTTGCTGACCTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085620.9
ENSMUST00000185399.2
CDS-3UTR CCA 90 bp AGAGAAAGAGGACAGGTCAGCAAGATGGCACTTGGATCAGACACATTGCAACGACATGCTTCCGTTGTCTaGAAGCCCAGCTCTCCAGTC +
Preference number: 4 (lower is better)
Translates to: RERGQVSKMALGSDTLQRHASVV*KPSSPV
Trigger: GACTGGAGAGCTGGGCTTCCAGACAACGGAAGCATG...TCGTTGCAATGTGTCTGATCCAAGTGCCATCTTGCTGACCTGTCCTCTTTCTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085620.9
ENSMUST00000185399.2
CDS-3UTR CCA 90 bp AGGAGAGAAAGAGGACAGGTCAGCAAGATGGCACTTGGATCAGACACATTGCAACATGCTTCCGTTGTCTaGAAGCCCAGCTCTCCAGTC +
Preference number: 4 (lower is better)
Translates to: RRERGQVSKMALGSDTLQHASVV*KPSSPV
Trigger: GACTGGAGAGCTGGGCTTCCAGACAACGGAAGCATG...TTGCAATGTGTCTGATCCAAGTGCCATCTTGCTGACCTGTCCTCTTTCTCTCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085620.9
ENSMUST00000185399.2
CDS-3UTR GCA 90 bp ACTGCTCTTCATCCACAGGAAAGAAAATCCCATGAGGTGATTCAGGTCTCCAGCGGCCACCCTTTCCGCTaGAGTAGCTTGAAACATCGA +
Preference number: 4 (lower is better)
Translates to: TALHPQERKSHEVIQVSSGHPFR*SSLKHR
Trigger: TCGATGTTTCAAGCTACTGCAGCGGAAAGGGTGGCC...GCTGGAGACCTGAATCACCTCATGGGATTTTCTTTCCTGTGGATGAAGAGCAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000185399.2
CDS-3UTR GCA 90 bp AGGACAGGTCAGCAAGATGGCACTTGGATCAGACACATTGCAACGATGGGTTGGATCTTCGGGATAGTATaGCTTGCATTCAGAGCTGAA +
Preference number: 4 (lower is better)
Translates to: RTGQQDGTWIRHIATMGWIFGIV*LAFRAE
Trigger: TTCAGCTCTGAATGCAAGGCATACTATCCCGAAGAT...CCAACCCATCGTTGCAATGTGTCTGATCCAAGTGCCATCTTGCTGACCTGTCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000085620.9
CDS-3UTR CCA 90 bp CATCTAGAAAACAAGGAGACAGACAGGGAGAGAGCTGGCTACAGGCAAGGTGCATCATTGAAGCAATCCTaGATCTTTTCAAAGGCCACC +
Preference number: 4 (lower is better)
Translates to: HLENKETDRERAGYRQGASLKQS*IFSKAT
Trigger: GGTGGCCTTTGAAAAGATCCAGGATTGCTTCAATGA...TGCACCTTGCCTGTAGCCAGCTCTCTCCCTGTCTGTCTCCTTGTTTTCTAGATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000185399.2
CDS-3UTR CCA 90 bp GGAGAGAAAGAGGACAGGTCAGCAAGATGGCACTTGGATCAGACACATTGCAACTCATTGAAGCAATCCTaGATCTTTTCAAAGGCCACC +
Preference number: 4 (lower is better)
Translates to: GEKEDRSARWHLDQTHCNSLKQS*IFSKAT
Trigger: GGTGGCCTTTGAAAAGATCCAGGATTGCTTCAATGA...GTTGCAATGTGTCTGATCCAAGTGCCATCTTGCTGACCTGTCCTCTTTCTCTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085620.9
ENSMUST00000185399.2
CDS-3UTR CAA 90 bp AGGAGAGAAAGAGGACAGGTCAGCAAGATGGCACTTGGATCAGACACATTGCAAGAGCACATGCTTCCGTaGTCTGGAAGCCCAGCTCTC +
Preference number: 5 (lower is better)
Translates to: RRERGQVSKMALGSDTLQEHMLP*SGSPAL
Trigger: GAGAGCTGGGCTTCCAGACAACGGAAGCATGTGCTC...TTGCAATGTGTCTGATCCAAGTGCCATCTTGCTGACCTGTCCTCTTTCTCTCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085620.9
ENSMUST00000185399.2
CDS-3UTR CAA 90 bp AGAAAGAGGACAGGTCAGCAAGATGGCACTTGGATCAGACACATTGCAACGATGGAGCACATGCTTCCGTaGTCTGGAAGCCCAGCTCTC +
Preference number: 5 (lower is better)
Translates to: RKRTGQQDGTWIRHIATMEHMLP*SGSPAL
Trigger: GAGAGCTGGGCTTCCAGACAACGGAAGCATGTGCTC...CATCGTTGCAATGTGTCTGATCCAAGTGCCATCTTGCTGACCTGTCCTCTTTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085620.9
ENSMUST00000185399.2
CDS GCA 90 bp ATTTCCACCCAGTATTTTAACATAGGCTCCGACAAAAGGAGCACATaGTTCCGTTGTCTGGAAGCCCAGCTCTCCAGTCACCAGCAAGGC +
Preference number: 5 (lower is better)
Translates to: ISTQYFNIGSDKRST*FRCLEAQLSSHQQG
Trigger: GCCTTGCTGGTGACTGGAGAGCTGGGCTTCCAGACAACGGAAGCATGTGCTCCTTTTGTCGGAGCCTATGTTAAAATACTGGGTGGAAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000085620.9
ENSMUST00000185399.2
CDS-3UTR CAA 90 bp AGGATGAGGGCACAGGTGTCAGGAATCCAACTTCAGGAGAGAAAGAGGACAGGTTGGGGACTCTTTAATTaGGTGGTTAATGGTTCCTCA +
Preference number: 5 (lower is better)
Translates to: RMRAQVSGIQLQERKRTGWGLFN*VVNGSS
Trigger: TGAGGAACCATTAACCACCAAATTAAAGAGTCCCCA...ACCTGTCCTCTTTCTCTCCTGAAGTTGGATTCCTGACACCTGTGCCCTCATCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000085620.9
CDS-3UTR CAA 90 bp AGCAGGCTCCCCAAGCACACACAGAGAGACTGCTCTTCATCCACAGGAAAGAAATGGGGACTCTTTAATTaGGTGGTTAATGGTTCCTCA +
Preference number: 5 (lower is better)
Translates to: SRLPKHTQRDCSSSTGKKWGLFN*VVNGSS
Trigger: TGAGGAACCATTAACCACCAAATTAAAGAGTCCCCA...TTTCTTTCCTGTGGATGAAGAGCAGTCTCTCTGTGTGTGCTTGGGGAGCCTGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000185399.2
CDS TCA 90 bp TCATTATTTGGGGACTCTTTAATTTGGTGGTTAATGGTTCCTCATTaGAGCAATCCTGGATCTTTTCAAAGGCCACCCTTTCCGCTGCAG +
Preference number: 5 (lower is better)
Translates to: SLFGDSLIWWLMVPH*SNPGSFQRPPFPLQ
Trigger: CTGCAGCGGAAAGGGTGGCCTTTGAAAAGATCCAGGATTGCTTCAATGAGGAACCATTAACCACCAAATTAAAGAGTCCCCAAATAATGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000085620.9
ENSMUST00000185399.2
CDS CAA 90 bp GTCATTATTTGGGGACTCTTTAATTTGGTGGTTAATGGTTCCTCATaGAAGCAATCCTGGATCTTTTCAAAGGCCACCCTTTCCGCTGCA +
Preference number: 6 (lower is better)
Translates to: VIIWGLFNLVVNGSS*KQSWIFSKATLSAA
Trigger: TGCAGCGGAAAGGGTGGCCTTTGAAAAGATCCAGGATTGCTTCAATGAGGAACCATTAACCACCAAATTAAAGAGTCCCCAAATAATGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000185399.2
CDS TCA 72 bp GGGGACTCTTTAATTTGGTGGTTAATGGTTCCTCATTaGAGCAATCCTGGATCTTTTCAAAGGCCACCCTTT +
Preference number: 6 (lower is better)
Translates to: GDSLIWWLMVPH*SNPGSFQRPPF
Trigger: AAAGGGTGGCCTTTGAAAAGATCCAGGATTGCTTCAATGAGGAACCATTAACCACCAAATTAAAGAGTCCCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000085620.9
ENSMUST00000185399.2
CDS CAA 90 bp ATCATTATTTGGGGACTCTTTAATTTGGTGGTTAATGGTTCCTCATaGAAGCAATCCTGGATCTTTTCAAAGGCCACCCTTTCCGCTGCA +
Preference number: 6 (lower is better)
Translates to: IIIWGLFNLVVNGSS*KQSWIFSKATLSAA
Trigger: TGCAGCGGAAAGGGTGGCCTTTGAAAAGATCCAGGATTGCTTCAATGAGGAACCATTAACCACCAAATTAAAGAGTCCCCAAATAATGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000085620.9
CDS CCA 72 bp TTGCATTCAGAGCTGAAGAGTATAGACATCATTATTTaGGGACTCTTTAATTTGGTGGTTAATGGTTCCTCA +
Preference number: 6 (lower is better)
Translates to: LHSELKSIDIII*GLFNLVVNGSS
Trigger: TGAGGAACCATTAACCACCAAATTAAAGAGTCCCCAAATAATGATGTCTATACTCTTCAGCTCTGAATGCAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000085620.9
CDS CAA 72 bp AAGAGTATAGACATCATTATTTGGGGACTCTTTAATTaGGTGGTTAATGGTTCCTCATTGAAGCAATCCTGG +
Preference number: 6 (lower is better)
Translates to: KSIDIIIWGLFN*VVNGSSLKQSW
Trigger: CCAGGATTGCTTCAATGAGGAACCATTAACCACCAAATTAAAGAGTCCCCAAATAATGATGTCTATACTCTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000085620.9