Pregenerated sensors for SCGB2B26 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000066586

Ensembl transcript IDs: ENSMUST00000085623.4

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR CCA 90 bp	GTCAGGAATCCAACTTCAGGAGAAAAAGAAGACAGGTCAGCAAGATaGCACTTGGATCAGACACATTGCAAAGATGGGTTGGCTATAAAC	+
Preference number: 1 (lower is better) Translates to: VRNPTSGEKEDRSAR*HLDQTHCKDGLAIN Trigger: GTTTATAGCCAACCCATCTTTGCAATGTGTCTGATCCAAGTGCCATCTTGCTGACCTGTCTTCTTTTTCTCCTGAAGTTGGATTCCTGAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000085623.4
3UTR-3UTR GCA 90 bp	ATGAGGGCACAGGTGTCAGGAATCCAACTTCAGGAGAAAAAGAAGACAGGTCAGTTGGATCAGACACATTaGAAAGATGGGTTGGCTATA	+
Preference number: 2 (lower is better) Translates to: MRAQVSGIQLQEKKKTGQLDQTH*KDGLAI Trigger: TATAGCCAACCCATCTTTGCAATGTGTCTGATCCAA...CTGACCTGTCTTCTTTTTCTCCTGAAGTTGGATTCCTGACACCTGTGCCCTCAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000085623.4
3UTR-3UTR CCA 90 bp	AGGATGAGGGCACAGGTGTCAGGAATCCAACTTCAGGAGAAAAAGAAGACAGGTGACACATTGCAAAGATaGGTTGGCTATAAACCATTA	+
Preference number: 2 (lower is better) Translates to: RMRAQVSGIQLQEKKKTGDTLQR*VGYKPL Trigger: TAATGGTTTATAGCCAACCCATCTTTGCAATGTGTC...ACCTGTCTTCTTTTTCTCCTGAAGTTGGATTCCTGACACCTGTGCCCTCATCCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000085623.4
CDS-3UTR GCA 90 bp	AAGAAGACAGGTCAGCAAGATGGCACTTGGATCAGACACATTGCAAAGATGGGTTGTGAAAGGTCACCATaGAGGAAGGTCCTCCTTAGA	+
Preference number: 4 (lower is better) Translates to: KKTGQQDGTWIRHIAKMGCERSP*RKVLLR Trigger: TCTAAGGAGGACCTTCCTGCATGGTGACCTTTCACA...ACCCATCTTTGCAATGTGTCTGATCCAAGTGCCATCTTGCTGACCTGTCTTCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085623.4
CDS-3UTR TCA 90 bp	AATCAGCCTAAGAGAGTACAGGATGAGGGCACAGGTGTCAGGAATCCAACTTCAAGTAGCATAAAACTGTaGAAGGTCACCATGCAGGAA	+
Preference number: 4 (lower is better) Translates to: NQPKRVQDEGTGVRNPTSSSIKL*KVTMQE Trigger: TTCCTGCATGGTGACCTTTCACAGTTTTATGCTACT...TGAAGTTGGATTCCTGACACCTGTGCCCTCATCCTGTACTCTCTTAGGCTGATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085623.4
CDS-3UTR GCA 90 bp	ATGAGGGCACAGGTGTCAGGAATCCAACTTCAGGAGAAAAAGAAGACAGGTCAGTGCCATAGTATTTCTTaGATTCTGGGCTTAAGTATA	+
Preference number: 4 (lower is better) Translates to: MRAQVSGIQLQEKKKTGQCHSIS*ILGLSI Trigger: TATACTTAAGCCCAGAATGCAAGAAATACTATGGCA...CTGACCTGTCTTCTTTTTCTCCTGAAGTTGGATTCCTGACACCTGTGCCCTCAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000085623.4
CDS-3UTR CAA 90 bp	ATCAGCCTAAGAGAGTACAGGATGAGGGCACAGGTGTCAGGAATCCAACTTCAGAAAGGCATGCTTCCGTaGTCTGGAAGCCCAGCTCTC	+
Preference number: 5 (lower is better) Translates to: ISLREYRMRAQVSGIQLQKGMLP*SGSPAL Trigger: GAGAGCTGGGCTTCCAGACAACGGAAGCATGCCTTT...CTGAAGTTGGATTCCTGACACCTGTGCCCTCATCCTGTACTCTCTTAGGCTGAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085623.4
CDS CAA 72 bp	CTCCGTAAGTTCTGGCAAAAGAAAGGCATGCTTCCGTaGTCTGGAAGCCCAGCTCTCCAATCACCAGCAAGG	+
Preference number: 6 (lower is better) Translates to: LRKFWQKKGMLP*SGSPALQSPAR Trigger: CCTTGCTGGTGATTGGAGAGCTGGGCTTCCAGACAACGGAAGCATGCCTTTCTTTTGCCAGAACTTACGGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085623.4

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