Pregenerated sensors for SCGB2B24 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000046438

Ensembl transcript IDs: ENSMUST00000055444.6

Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR-3UTR CAA 90 bp	GCACAGGTGTCAGGAATCCAACTTCAGGAGAGAAAAAGGACAGATCAGCAAGATCTCAGATTAGACATGTaGCAAATATGGGTTGCCTAT	+
Preference number: 3 (lower is better) Translates to: AQVSGIQLQERKRTDQQDLRLDM*QIWVAY Trigger: ATAGGCAACCCATATTTGCAACATGTCTAATCTGAG...ATCTTGCTGATCTGTCCTTTTTCTCTCCTGAAGTTGGATTCCTGACACCTGTGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055444.6
CDS-3UTR TCA 90 bp	CAGGTGTCAGGAATCCAACTTCAGGAGAGAAAAAGGACAGATCAGCAAGATGGTCCACAGCCTGCTTCCTaGGATAACACCAGCATATCC	+
Preference number: 4 (lower is better) Translates to: QVSGIQLQERKRTDQQDGPQPAS*DNTSIS Trigger: GGATATGCTGGTGTTATCTCAGGAAGCAGGCTGTGG...ACCATCTTGCTGATCTGTCCTTTTTCTCTCCTGAAGTTGGATTCCTGACACCTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055444.6
CDS-3UTR CCA 90 bp	TCAGGAATCCAACTTCAGGAGAGAAAAAGGACAGATCAGCAAGATGGTGCTCAGGTACTGCAGGCATTCTaGGGTGACAAGTATAGAGGC	+
Preference number: 4 (lower is better) Translates to: SGIQLQERKRTDQQDGAQVLQAF*GDKYRG Trigger: GCCTCTATACTTGTCACCCCAGAATGCCTGCAGTAC...CTGAGCACCATCTTGCTGATCTGTCCTTTTTCTCTCCTGAAGTTGGATTCCTGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055444.6
CDS-3UTR GCA 90 bp	ATCAGCCTAAGAGAGTGCAGGATGATGGCACAGGTGTCAGGAATCCAACTTCAGAGGTGTACCATTGAATaGGCTAAGTTCATGATACAA	+
Preference number: 4 (lower is better) Translates to: ISLRECRMMAQVSGIQLQRCTIE*AKFMIQ Trigger: TTGTATCATGAACTTAGCGCATTCAATGGTACACCT...CTGAAGTTGGATTCCTGACACCTGTGCCATCATCCTGCACTCTCTTAGGCTGAT 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055444.6
CDS-3UTR CCA 90 bp	AAGAGAGTGCAGGATGATGGCACAGGTGTCAGGAATCCAACTTCAGGAGAGAAATGTGGTTCCAGTGTTTaGGATTTAACTCCTTGTTCT	+
Preference number: 4 (lower is better) Translates to: KRVQDDGTGVRNPTSGEKCGSSV*DLTPCS Trigger: AGAACAAGGAGTTAAATCCCAAACACTGGAACCACA...TTTCTCTCCTGAAGTTGGATTCCTGACACCTGTGCCATCATCCTGCACTCTCTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055444.6
CDS-3UTR GCA 90 bp	AAAAGGACAGATCAGCAAGATGGTGCTCAGATTAGACATGTTGCAAATATGGGTAAAGAAAGGAACACATaGTTCTGTTGTATGGAAGCC	+
Preference number: 4 (lower is better) Translates to: KRTDQQDGAQIRHVANMGKERNT*FCCMEA Trigger: GGCTTCCATACAACAGAAGCATGTGTTCCTTTCTTT...ACCCATATTTGCAACATGTCTAATCTGAGCACCATCTTGCTGATCTGTCCTTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055444.6
CDS-3UTR CAA 90 bp	GCATTTATTAGAATCAGCCTAAGAGAGTGCAGGATGATGGCACAGGTGTCAGGAGAACACATGCTTCTGTaGTATGGAAGCCCAGCTCTC	+
Preference number: 5 (lower is better) Translates to: AFIRISLRECRMMAQVSGEHMLL*YGSPAL Trigger: GAGAGCTGGGCTTCCATACAACAGAAGCATGTGTTC...TCCTGACACCTGTGCCATCATCCTGCACTCTCTTAGGCTGATTCTAATAAATGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055444.6
CDS-3UTR CAA 90 bp	AGAATCAGCCTAAGAGAGTGCAGGATGATGGCACAGGTGTCAGGAATCCAACTTTATAGAGGCCAAAATTaGTGGTTCCAGTGTTTGGGA	+
Preference number: 5 (lower is better) Translates to: RISLRECRMMAQVSGIQLYRGQN*WFQCLG Trigger: TCCCAAACACTGGAACCACAAATTTTGGCCTCTATA...AAGTTGGATTCCTGACACCTGTGCCATCATCCTGCACTCTCTTAGGCTGATTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055444.6
CDS CCA 90 bp	GTACTGCAGGCATTCTGGGGTGACAAGTATAGAGGCCAAAATTTGTaGTTCCAGTGTTTGGGATTTAACTCCTTGTTCTTTGTAGCAGTC	+
Preference number: 5 (lower is better) Translates to: VLQAFWGDKYRGQNL*FQCLGFNSLFFVAV Trigger: GACTGCTACAAAGAACAAGGAGTTAAATCCCAAACACTGGAACCACAAATTTTGGCCTCTATACTTGTCACCCCAGAATGCCTGCAGTAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055444.6
CDS-3UTR CAA 90 bp	TTTATTAGAATCAGCCTAAGAGAGTGCAGGATGATGGCACAGGTGTCAGGAATCTTGGGATTTAACTCCTaGTTCTTTGTAGCAGTCCTG	+
Preference number: 5 (lower is better) Translates to: FIRISLRECRMMAQVSGILGFNS*FFVAVL Trigger: CAGGACTGCTACAAAGAACAAGGAGTTAAATCCCAA...GATTCCTGACACCTGTGCCATCATCCTGCACTCTCTTAGGCTGATTCTAATAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055444.6
CDS CAA 72 bp	CAGCATATCCAGCAAAGAAAGGAACACATGCTTCTGTaGTATGGAAGCCCAGCTCTCCAATCATCAGCAAGG	+
Preference number: 6 (lower is better) Translates to: QHIQQRKEHMLL*YGSPALQSSAR Trigger: CCTTGCTGATGATTGGAGAGCTGGGCTTCCATACAACAGAAGCATGTGTTCCTTTCTTTGCTGGATATGCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055444.6
CDS GCA 72 bp	TTCATAGGCCACTGTTTCCTTAGGTGTACCATTGAATaGGCTAAGTTCATGATACAACCACAGCCTGCTTCC	+
Preference number: 6 (lower is better) Translates to: FIGHCFLRCTIE*AKFMIQPQPAS Trigger: GGAAGCAGGCTGTGGTTGTATCATGAACTTAGCGCATTCAATGGTACACCTAAGGAAACAGTGGCCTATGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055444.6
CDS CCA 72 bp	CGTAAAGGTTTCTTCGGAATAGTACTGCAGGCATTCTaGGGTGACAAGTATAGAGGCCAAAATTTGTGGTTC	+
Preference number: 6 (lower is better) Translates to: RKGFFGIVLQAF*GDKYRGQNLWF Trigger: GAACCACAAATTTTGGCCTCTATACTTGTCACCCCAGAATGCCTGCAGTACTATTCCGAAGAAACCTTTACG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055444.6
CDS CCA 72 bp	GCATTCTGGGGTGACAAGTATAGAGGCCAAAATTTGTaGTTCCAGTGTTTGGGATTTAACTCCTTGTTCTTT	+
Preference number: 6 (lower is better) Translates to: AFWGDKYRGQNL*FQCLGFNSLFF Trigger: AAAGAACAAGGAGTTAAATCCCAAACACTGGAACCACAAATTTTGGCCTCTATACTTGTCACCCCAGAATGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055444.6