Pregenerated sensors for SCGB2B21 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000099900

Ensembl transcript IDs: ENSMUST00000185407.2

Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR CCA 90 bp	ATCCAACTTCAGGAGAGAAAGAGGACAGGTCAGCAAAATGGCACTTaGATCAGACATGTTGCAAAGATGGGTTGCCCAAAACACATTAAC	+
Preference number: 1 (lower is better) Translates to: IQLQERKRTGQQNGT*IRHVAKMGCPKHIN Trigger: GTTAATGTGTTTTGGGCAACCCATCTTTGCAACATGTCTGATCCAAGTGCCATTTTGCTGACCTGTCCTCTTTCTCTCCTGAAGTTGGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000185407.2
3UTR-3UTR GCA 90 bp	ACAGAGCTGCAAGCCTTTATTAGAATCAGTCTAAGGGACTGGATGGTGAAAGAATTGGATCAGACATGTTaGAAAGATGGGTTGCCCAAA	+
Preference number: 2 (lower is better) Translates to: TELQAFIRISLRDWMVKELDQTC*KDGLPK Trigger: TTTGGGCAACCCATCTTTGCAACATGTCTGATCCAA...TTCTTTCACCATCCAGTCCCTTAGACTGATTCTAATAAAGGCTTGCAGCTCTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185407.2
3UTR-3UTR CCA 90 bp	CAAGCCTTTATTAGAATCAGTCTAAGGGACTGGATGGTGAAAGAACAGGATCAGCAGCAAAATGGCACTTaGATCAGACATGTTGCAAAG	+
Preference number: 2 (lower is better) Translates to: QAFIRISLRDWMVKEQDQQQNGT*IRHVAK Trigger: CTTTGCAACATGTCTGATCCAAGTGCCATTTTGCTG...CTGATCCTGTTCTTTCACCATCCAGTCCCTTAGACTGATTCTAATAAAGGCTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185407.2
3UTR-3UTR CCA 90 bp	ACAGAGCTGCAAGCCTTTATTAGAATCAGTCTAAGGGACTGGATGGTGAAAGAAGACATGTTGCAAAGATaGGTTGCCCAAAACACATTA	+
Preference number: 2 (lower is better) Translates to: TELQAFIRISLRDWMVKEDMLQR*VAQNTL Trigger: TAATGTGTTTTGGGCAACCCATCTTTGCAACATGTC...TTCTTTCACCATCCAGTCCCTTAGACTGATTCTAATAAAGGCTTGCAGCTCTGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185407.2
CDS-3UTR GCA 90 bp	CAAGCCTTTATTAGAATCAGTCTAAGGGACTGGATGGTGAAAGAACAGGATCAGTCCAGAGACAACACTTaGATAGCCTTCAAAGAAAGG	+
Preference number: 4 (lower is better) Translates to: QAFIRISLRDWMVKEQDQSRDNT*IAFKER Trigger: CCTTTCTTTGAAGGCTATGCAAGTGTTGTCTCTGGA...CTGATCCTGTTCTTTCACCATCCAGTCCCTTAGACTGATTCTAATAAAGGCTTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185407.2
CDS-3UTR GCA 90 bp	CAAGCCTTTATTAGAATCAGTCTAAGGGACTGGATGGTGAAAGAACAGGATCAGAAAGAAAGGAACACATaGTTCTGTTGTCTGGAAGCT	+
Preference number: 4 (lower is better) Translates to: QAFIRISLRDWMVKEQDQKERNT*FCCLEA Trigger: AGCTTCCAGACAACAGAAGCATGTGTTCCTTTCTTT...CTGATCCTGTTCTTTCACCATCCAGTCCCTTAGACTGATTCTAATAAAGGCTTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185407.2
CDS GCA 90 bp	CTGGAATTCTTGATACATCCACACCCTACTTCCAGAGACAACACTTaGATAGCCTTCAAAGAAAGGAACACATGCTTCTGTTGTCTGGAA	+
Preference number: 5 (lower is better) Translates to: LEFLIHPHPTSRDNT*IAFKERNTCFCCLE Trigger: TTCCAGACAACAGAAGCATGTGTTCCTTTCTTTGAAGGCTATGCAAGTGTTGTCTCTGGAAGTAGGGTGTGGATGTATCAAGAATTCCAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185407.2
CDS-3UTR CAA 90 bp	ACAGAGCTGCAAGCCTTTATTAGAATCAGTCTAAGGGACTGGATGGTGAAAGAATTCCAGAGACAACACTaGCATAGCCTTCAAAGAAAG	+
Preference number: 5 (lower is better) Translates to: TELQAFIRISLRDWMVKEFQRQH*HSLQRK Trigger: CTTTCTTTGAAGGCTATGCAAGTGTTGTCTCTGGAA...TTCTTTCACCATCCAGTCCCTTAGACTGATTCTAATAAAGGCTTGCAGCTCTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185407.2
CDS GCA 72 bp	TTCCAAGGCCACCTTTTCCTCTGCAGTAGCATCGAATaGCTGGAATTCTTGATACATCCACACCCTACTTCC	+
Preference number: 6 (lower is better) Translates to: FQGHLFLCSSIE*LEFLIHPHPTS Trigger: GGAAGTAGGGTGTGGATGTATCAAGAATTCCAGGCATTCGATGCTACTGCAGAGGAAAAGGTGGCCTTGGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185407.2
CDS CAA 90 bp	CCTGGAATTCTTGATACATCCACACCCTACTTCCAGAGACAACACTaGCATAGCCTTCAAAGAAAGGAACACATGCTTCTGTTGTCTGGA	+
Preference number: 6 (lower is better) Translates to: PGILDTSTPYFQRQH*HSLQRKEHMLLLSG Trigger: TCCAGACAACAGAAGCATGTGTTCCTTTCTTTGAAGGCTATGCAAGTGTTGTCTCTGGAAGTAGGGTGTGGATGTATCAAGAATTCCAGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185407.2
CDS GCA 72 bp	TTGATACATCCACACCCTACTTCCAGAGACAACACTTaGATAGCCTTCAAAGAAAGGAACACATGCTTCTGT	+
Preference number: 6 (lower is better) Translates to: LIHPHPTSRDNT*IAFKERNTCFC Trigger: ACAGAAGCATGTGTTCCTTTCTTTGAAGGCTATGCAAGTGTTGTCTCTGGAAGTAGGGTGTGGATGTATCAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185407.2
CDS CAA 72 bp	AGGCATTCTGGGCTGGCAACCATAGCTTCCATAATTTaGGGTTCCAGAAGTATGTTTCTTAAACTCTCCTCT	+
Preference number: 6 (lower is better) Translates to: RHSGLATIASII*GSRSMFLKLSS Trigger: AGAGGAGAGTTTAAGAAACATACTTCTGGAACCCAAAATTATGGAAGCTATGGTTGCCAGCCCAGAATGCCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185407.2

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