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Pregenerated sensors for SCGB2B20 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000094305

Ensembl transcript IDs: ENSMUST00000179248.2

Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp ATCAGGAATCCAACTTCAGGAGAGAAAAAGGACAGGTCAGCAAGGTaGCACTTGGATCATACATGTTGCAAAGATGGGTGCCCAAAACAC +
Preference number: 1 (lower is better)
Translates to: IRNPTSGEKKDRSAR*HLDHTCCKDGCPKH
Trigger: GTGTTTTGGGCACCCATCTTTGCAACATGTATGATCCAAGTGCCACCTTGCTGACCTGTCCTTTTTCTCTCCTGAAGTTGGATTCCTGAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000179248.2
3UTR CCA 90 bp ATCCAACTTCAGGAGAGAAAAAGGACAGGTCAGCAAGGTGGCACTTaGATCATACATGTTGCAAAGATGGGTGCCCAAAACACATTAACA +
Preference number: 1 (lower is better)
Translates to: IQLQERKRTGQQGGT*IIHVAKMGAQNTLT
Trigger: TGTTAATGTGTTTTGGGCACCCATCTTTGCAACATGTATGATCCAAGTGCCACCTTGCTGACCTGTCCTTTTTCTCTCCTGAAGTTGGAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000179248.2
3UTR TCA 90 bp CACAGAACAGAGTTGCAAGCTTTTATTAGAATCAGTCTAAGAGACTaGATGATGAAGGAACAGTATCAGGAATCCAACTTCAGGAGAGAA +
Preference number: 1 (lower is better)
Translates to: HRTELQAFIRISLRD*MMKEQYQESNFRRE
Trigger: TTCTCTCCTGAAGTTGGATTCCTGATACTGTTCCTTCATCATTCAGTCTCTTAGACTGATTCTAATAAAAGCTTGCAACTCTGTTCTGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179248.2
3UTR CAA 90 bp AATCCAACTTCAGGAGAGAAAAAGGACAGGTCAGCAAGGTGGCACTaGGATCATACATGTTGCAAAGATGGGTGCCCAAAACACATTAAC +
Preference number: 2 (lower is better)
Translates to: NPTSGEKKDRSARWH*DHTCCKDGCPKHIN
Trigger: GTTAATGTGTTTTGGGCACCCATCTTTGCAACATGTATGATCCAAGTGCCACCTTGCTGACCTGTCCTTTTTCTCTCCTGAAGTTGGATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000179248.2
3UTR CCA 72 bp CAGGAGAGAAAAAGGACAGGTCAGCAAGGTGGCACTTaGATCATACATGTTGCAAAGATGGGTGCCCAAAAC +
Preference number: 3 (lower is better)
Translates to: QERKRTGQQGGT*IIHVAKMGAQN
Trigger: GTTTTGGGCACCCATCTTTGCAACATGTATGATCCAAGTGCCACCTTGCTGACCTGTCCTTTTTCTCTCCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000179248.2
CDS-3UTR TCA 90 bp GACAGGTCAGCAAGGTGGCACTTGGATCATACATGTTGCAAAGATGGGTGCCCACCACACCCTACTTCCTaGGAGAACACTTGCATAGCC +
Preference number: 4 (lower is better)
Translates to: DRSARWHLDHTCCKDGCPPHPTS*ENTCIA
Trigger: GGCTATGCAAGTGTTCTCTCAGGAAGTAGGGTGTGG...TGGGCACCCATCTTTGCAACATGTATGATCCAAGTGCCACCTTGCTGACCTGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179248.2
CDS-3UTR TCA 90 bp CAAGGTGGCACTTGGATCATACATGTTGCAAAGATGGGTGCCCAAAACACATTAGTCAAGACCATAGTATaGCAGGCATTCAGGGCTGGC +
Preference number: 4 (lower is better)
Translates to: QGGTWIIHVAKMGAQNTLVKTIV*QAFRAG
Trigger: GCCAGCCCTGAATGCCTGTCATACTATGGTCTTGAC...TAATGTGTTTTGGGCACCCATCTTTGCAACATGTATGATCCAAGTGCCACCTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179248.2
3UTR CAA 72 bp TCAGGAGAGAAAAAGGACAGGTCAGCAAGGTGGCACTaGGATCATACATGTTGCAAAGATGGGTGCCCAAAA +
Preference number: 4 (lower is better)
Translates to: SGEKKDRSARWH*DHTCCKDGCPK
Trigger: TTTTGGGCACCCATCTTTGCAACATGTATGATCCAAGTGCCACCTTGCTGACCTGTCCTTTTTCTCTCCTGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000179248.2
CDS-3UTR CAA 90 bp AGGAGAGAAAAAGGACAGGTCAGCAAGGTGGCACTTGGATCATACATGTTGCAAGAAGACATGCTTCTGTaGTCTGGAAGCTCAGTTCTC +
Preference number: 5 (lower is better)
Translates to: RREKGQVSKVALGSYMLQEDMLL*SGSSVL
Trigger: GAGAACTGAGCTTCCAGACAACAGAAGCATGTCTTC...TTGCAACATGTATGATCCAAGTGCCACCTTGCTGACCTGTCCTTTTTCTCTCCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000179248.2
CDS CAA 90 bp AGAGAACACTTGCATAGCCTTCGAAGAAAGGAAGACATGCTTCTGTaGTCTGGAAGCTCAGTTCTCCAGTCACCAGCAAGCCCAGCAGAA +
Preference number: 6 (lower is better)
Translates to: REHLHSLRRKEDMLL*SGSSVLQSPASPAE
Trigger: TTCTGCTGGGCTTGCTGGTGACTGGAGAACTGAGCTTCCAGACAACAGAAGCATGTCTTCCTTTCTTCGAAGGCTATGCAAGTGTTCTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179248.2
CDS GCA 72 bp TTCCAAGGCCACCTTTTCCTCTGCAGTAGCATTGAATaGCTGGAGTTCTTGATACAACCACACCCTACTTCC +
Preference number: 6 (lower is better)
Translates to: FQGHLFLCSSIE*LEFLIQPHPTS
Trigger: GGAAGTAGGGTGTGGTTGTATCAAGAACTCCAGGCATTCAATGCTACTGCAGAGGAAAAGGTGGCCTTGGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179248.2
CDS TCA 72 bp TGCCTGGAGTTCTTGATACAACCACACCCTACTTCCTaGGAGAACACTTGCATAGCCTTCGAAGAAAGGAAG +
Preference number: 6 (lower is better)
Translates to: CLEFLIQPHPTS*ENTCIAFEERK
Trigger: CTTCCTTTCTTCGAAGGCTATGCAAGTGTTCTCTCAGGAAGTAGGGTGTGGTTGTATCAAGAACTCCAGGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179248.2
CDS CAA 72 bp CTTGATACAACCACACCCTACTTCCTGAGAGAACACTaGCATAGCCTTCGAAGAAAGGAAGACATGCTTCTG +
Preference number: 6 (lower is better)
Translates to: LDTTTPYFLREH*HSLRRKEDMLL
Trigger: CAGAAGCATGTCTTCCTTTCTTCGAAGGCTATGCAAGTGTTCTCTCAGGAAGTAGGGTGTGGTTGTATCAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179248.2
CDS CAA 72 bp AGGCATTCAGGGCTGGCAACCATGGCTTCCATAATTTaGGGTTCCAGAAGTATATTTCTTATTCTTTCCTCA +
Preference number: 6 (lower is better)
Translates to: RHSGLATMASII*GSRSIFLILSS
Trigger: TGAGGAAAGAATAAGAAATATACTTCTGGAACCCAAAATTATGGAAGCCATGGTTGCCAGCCCTGAATGCCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179248.2