Pregenerated sensors for SCGB2B2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000036521

Ensembl transcript IDs: ENSMUST00000038835.5, ENSMUST00000205821.2

Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR CCA 72 bp	AATCCAACTTACAGAGAGAAAGAAAGGTCAGCAAGATaGCACTCAGATCAGACACATTGCAAAGATGGGTTG	+
Preference number: 3 (lower is better) Translates to: NPTYREKERSAR*HSDQTHCKDGL Trigger: CAACCCATCTTTGCAATGTGTCTGATCTGAGTGCCATCTTGCTGACCTTTCTTTCTCTCTGTAAGTTGGATT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038835.5 ENSMUST00000205821.2
CDS-3UTR CCA 90 bp	AAAGAAAGGTCAGCAAGATGGCACTCAGATCAGACACATTGCAAAGATGGGTTGCATGCTTCCGTTCTCTaGAAGCCCAGCTCTCCAGTC	+
Preference number: 4 (lower is better) Translates to: KERSARWHSDQTHCKDGLHASVL*KPSSPV Trigger: GACTGGAGAGCTGGGCTTCCAGAGAACGGAAGCATG...CAACCCATCTTTGCAATGTGTCTGATCTGAGTGCCATCTTGCTGACCTTTCTTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038835.5
CDS GCA 90 bp	GTTTCCAGAGAGAATACCCAAATATACGCCGAAGAAAGGTATGCATaGTTCCGTTCTCTGGAAGCCCAGCTCTCCAGTCACCAGCAAGGC	+
Preference number: 5 (lower is better) Translates to: VSRENTQIYAEERYA*FRSLEAQLSSHQQG Trigger: GCCTTGCTGGTGACTGGAGAGCTGGGCTTCCAGAGAACGGAAGCATGCATACCTTTCTTCGGCGTATATTTGGGTATTCTCTCTGGAAAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038835.5
CDS TCA 90 bp	CAGAATGTTCTTCAAGACTTCTTTGGTATAGTACGACCTGCATTCTaGGCTGAAGAGTATAGTTGTCATCAATTTCATATCTTCAGTCTT	+
Preference number: 5 (lower is better) Translates to: QNVLQDFFGIVRPAF*AEEYSCHQFHIFSL Trigger: AAGACTGAAGATATGAAATTGATGACAACTATACTCTTCAGCTCAGAATGCAGGTCGTACTATACCAAAGAAGTCTTGAAGAACATTCTG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038835.5 ENSMUST00000205821.2