Pregenerated sensors for SCGB2B19 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000096467

Ensembl transcript IDs: ENSMUST00000179688.3

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS-3UTR TCA 90 bp	AGGAGAGAAAGAGGACAGGTCAGCAAGATGGCACTTGGATCAGACATGTTGCAACCACACCCTACTTCCTaGGACAACACTTGCATAGCC	+
Preference number: 4 (lower is better) Translates to: RRERGQVSKMALGSDMLQPHPTS*DNTCIA Trigger: GGCTATGCAAGTGTTGTCTCAGGAAGTAGGGTGTGG...TTGCAACATGTCTGATCCAAGTGCCATCTTGCTGACCTGTCCTCTTTCTCTCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179688.3
CDS-3UTR CAA 90 bp	ACTTCAGGAGAGAAAGAGGACAGGTCAGCAAGATGGCACTTGGATCAGACATGTGAACACATGCTTCTGTaGTCTGGAAGCTCAGCTCTC	+
Preference number: 5 (lower is better) Translates to: TSGEKEDRSARWHLDQTCEHMLL*SGSSAL Trigger: GAGAGCTGAGCTTCCAGACAACAGAAGCATGTGTTC...ACATGTCTGATCCAAGTGCCATCTTGCTGACCTGTCCTCTTTCTCTCCTGAAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179688.3
CDS CAA 90 bp	AGACAACACTTGCATAGCCTTCGAAGAAAGGAACACATGCTTCTGTaGTCTGGAAGCTCAGCTCTCCAGTTATCAGCAAGCCCAGCAGAA	+
Preference number: 6 (lower is better) Translates to: RQHLHSLRRKEHMLL*SGSSALQLSASPAE Trigger: TTCTGCTGGGCTTGCTGATAACTGGAGAGCTGAGCTTCCAGACAACAGAAGCATGTGTTCCTTTCTTCGAAGGCTATGCAAGTGTTGTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179688.3
CDS TCA 72 bp	TTCCAAGGCCACCTTTTCCTCTGCAGTAGCATCGAATaGTTGGAGTTCATGATACAACCACACCCTACTTCC	+
Preference number: 6 (lower is better) Translates to: FQGHLFLCSSIE*LEFMIQPHPTS Trigger: GGAAGTAGGGTGTGGTTGTATCATGAACTCCAATCATTCGATGCTACTGCAGAGGAAAAGGTGGCCTTGGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179688.3
CDS CAA 72 bp	TTGCATAGCCTTCGAAGAAAGGAACACATGCTTCTGTaGTCTGGAAGCTCAGCTCTCCAGTTATCAGCAAGC	+
Preference number: 6 (lower is better) Translates to: LHSLRRKEHMLL*SGSSALQLSAS Trigger: GCTTGCTGATAACTGGAGAGCTGAGCTTCCAGACAACAGAAGCATGTGTTCCTTTCTTCGAAGGCTATGCAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179688.3
CDS GCA 72 bp	GACAACACTTGCATAGCCTTCGAAGAAAGGAACACATaGTTCTGTTGTCTGGAAGCTCAGCTCTCCAGTTAT	+
Preference number: 6 (lower is better) Translates to: DNTCIAFEERNT*FCCLEAQLSSY Trigger: ATAACTGGAGAGCTGAGCTTCCAGACAACAGAAGCATGTGTTCCTTTCTTCGAAGGCTATGCAAGTGTTGTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179688.3
CDS CAA 72 bp	CATGATACAACCACACCCTACTTCCTGAGACAACACTaGCATAGCCTTCGAAGAAAGGAACACATGCTTCTG	+
Preference number: 6 (lower is better) Translates to: HDTTTPYFLRQH*HSLRRKEHMLL Trigger: CAGAAGCATGTGTTCCTTTCTTCGAAGGCTATGCAAGTGTTGTCTCAGGAAGTAGGGTGTGGTTGTATCATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179688.3
CDS CAA 72 bp	CGGCATTCTGGGCTGGCGACCATGGCTTCCATAATTTaGGGTTCAAGAAGTATATTTCTTAATCTTTCCTCT	+
Preference number: 6 (lower is better) Translates to: RHSGLATMASII*GSRSIFLNLSS Trigger: AGAGGAAAGATTAAGAAATATACTTCTTGAACCCAAAATTATGGAAGCCATGGTCGCCAGCCCAGAATGCCG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179688.3

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