Pregenerated sensors for SCGB2B18 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000100058

Ensembl transcript IDs: ENSMUST00000186529.2

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR-3UTR GCA 90 bp	AGAATCAGGAATCCTACTTCAGGAGAGAAAGAGAACAGGTCAGCAAGATGGCACTTAGATCAGACATGTTaGAAAGATGGGTGCCCAAAA	+
Preference number: 2 (lower is better) Translates to: RIRNPTSGEKENRSARWHLDQTC*KDGCPK Trigger: TTTTGGGCACCCATCTTTGCAACATGTCTGATCTAA...GTGCCATCTTGCTGACCTGTTCTCTTTCTCTCCTGAAGTAGGATTCCTGATTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186529.2
3UTR-3UTR CAA 90 bp	AAGAGACTGAATGATGAAGGAACAGAATCAGGAATCCTACTTCAGGAGAGAAAGCTTAGATCAGACATGTaGCAAAGATGGGTGCCCAAA	+
Preference number: 3 (lower is better) Translates to: KRLNDEGTESGILLQERKLRSDM*QRWVPK Trigger: TTTGGGCACCCATCTTTGCAACATGTCTGATCTAAG...CTTTCTCTCCTGAAGTAGGATTCCTGATTCTGTTCCTTCATCATTCAGTCTCTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186529.2
CDS-3UTR CCA 90 bp	ACAGAATCAGGAATCCTACTTCAGGAGAGAAAGAGAACAGGTCAGCAAGATGGCCATGCTTCTGATGTCTaGAAGCTCAGTTCTCCAGTC	+
Preference number: 4 (lower is better) Translates to: TESGILLQERKRTGQQDGHASDV*KLSSPV Trigger: GACTGGAGAACTGAGCTTCCAGACATCAGAAGCATG...GCCATCTTGCTGACCTGTTCTCTTTCTCTCCTGAAGTAGGATTCCTGATTCTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186529.2
CDS-3UTR TCA 90 bp	AGGAACAGAATCAGGAATCCTACTTCAGGAGAGAAAGAGAACAGGTCAGCAAGAAGAAACACATGCTTCTaGTGTCTGGAAGCTCAGTTC	+
Preference number: 4 (lower is better) Translates to: RNRIRNPTSGEKENRSARRNTCF*CLEAQF Trigger: GAACTGAGCTTCCAGACATCAGAAGCATGTGTTTCT...TCTTGCTGACCTGTTCTCTTTCTCTCCTGAAGTAGGATTCCTGATTCTGTTCCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186529.2
CDS-3UTR TCA 90 bp	GATGAAGGAACAGAATCAGGAATCCTACTTCAGGAGAGAAAGAGAACAGGTCAGAATGCCTGTAGTTCTTaGTACAACCACACCCTACTT	+
Preference number: 4 (lower is better) Translates to: DEGTESGILLQERKRTGQNACSS*YNHTLL Trigger: AAGTAGGGTGTGGTTGTATCAAGAACTACAGGCATT...CTGACCTGTTCTCTTTCTCTCCTGAAGTAGGATTCCTGATTCTGTTCCTTCATC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186529.2
CDS-3UTR CCA 90 bp	ACAGAATCAGGAATCCTACTTCAGGAGAGAAAGAGAACAGGTCAGCAAGATGGCAAATTGTTAAAACTATaGTATGACCGGCATTCTGGG	+
Preference number: 4 (lower is better) Translates to: TESGILLQERKRTGQQDGKLLKL*YDRHSG Trigger: CCCAGAATGCCGGTCATACCATAGTTTTAACAATTT...GCCATCTTGCTGACCTGTTCTCTTTCTCTCCTGAAGTAGGATTCCTGATTCTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186529.2
CDS-3UTR CAA 90 bp	AAGGAACAGAATCAGGAATCCTACTTCAGGAGAGAAAGAGAACAGGTCAGCAAGTTCCTGAGAGAACACTaGCATAGCCTTCAAAGAAAG	+
Preference number: 5 (lower is better) Translates to: KEQNQESYFRREREQVSKFLREH*HSLQRK Trigger: CTTTCTTTGAAGGCTATGCAAGTGTTCTCTCAGGAA...CTTGCTGACCTGTTCTCTTTCTCTCCTGAAGTAGGATTCCTGATTCTGTTCCTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186529.2
CDS CAA 72 bp	CGGCATTCTGGGCTGGCGACCATGGCTTCCATAATTTaGGGTTCCAGAAGTATATTTCTTATTCTTTCCTCA	+
Preference number: 6 (lower is better) Translates to: RHSGLATMASII*GSRSIFLILSS Trigger: TGAGGAAAGAATAAGAAATATACTTCTGGAACCCAAAATTATGGAAGCCATGGTCGCCAGCCCAGAATGCCG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186529.2
CDS CAA 72 bp	CTTGATACAACCACACCCTACTTCCTGAGAGAACACTaGCATAGCCTTCAAAGAAAGAAACACATGCTTCTG	+
Preference number: 6 (lower is better) Translates to: LDTTTPYFLREH*HSLQRKKHMLL Trigger: CAGAAGCATGTGTTTCTTTCTTTGAAGGCTATGCAAGTGTTCTCTCAGGAAGTAGGGTGTGGTTGTATCAAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186529.2