Pregenerated sensors for SCGB2B17 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000098094

Ensembl transcript IDs: ENSMUST00000182139.2, ENSMUST00000182640.8, ENSMUST00000182673.2

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR GCA 90 bp	AAGAAAGAGGACAGGTCAGCAAGATGGCACGTGGATCAGACATGTTaGAAAGATGGGTACCCAAAACACATTAACATCTACTCTCCTAAT	+
Preference number: 1 (lower is better) Translates to: KKEDRSARWHVDQTC*KDGYPKHINIYSPN Trigger: ATTAGGAGAGTAGATGTTAATGTGTTTTGGGTACCCATCTTTGCAACATGTCTGATCCACGTGCCATCTTGCTGACCTGTCCTCTTTCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000182139.2
3UTR TCA 90 bp	CACAGAACAGAGTTGCAAGCTTTTATTAGAATCAGTCTAAGAGACTaGATGATGAAGGAACAGTATCAGGAATCCAACTTCAGGAAAGAA	+
Preference number: 1 (lower is better) Translates to: HRTELQAFIRISLRD*MMKEQYQESNFRKE Trigger: TTCTTTCCTGAAGTTGGATTCCTGATACTGTTCCTTCATCATTCAGTCTCTTAGACTGATTCTAATAAAAGCTTGCAACTCTGTTCTGTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000182640.8 ENSMUST00000182673.2
CDS-3UTR CCA 90 bp	AAAGAGGACAGGTCAGCAAGATGGCACGTGGATCAGACATGTTGCAAAGATGGGACAAGTGATTTTGTCTaGAAGCTCAGTTCTCCAGTC	+
Preference number: 4 (lower is better) Translates to: KEDRSARWHVDQTCCKDGTSDFV*KLSSPV Trigger: GACTGGAGAACTGAGCTTCCAGACAAAATCACTTGT...CCCATCTTTGCAACATGTCTGATCCACGTGCCATCTTGCTGACCTGTCCTCTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000182640.8
CDS CCA 90 bp	AGGTCTGTCTCAGGGCCCCACTTAGATATCTCCATGGGACTGAGATaGGATGAACAAGGGTACCACTCTCACTTGTCTGGAAGCTCAGTT	+
Preference number: 5 (lower is better) Translates to: RSVSGPHLDISMGLR*DEQGYHSHLSGSSV Trigger: AACTGAGCTTCCAGACAAGTGAGAGTGGTACCCTTGTTCATCCCATCTCAGTCCCATGGAGATATCTAAGTGGGGCCCTGAGACAGACCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000182139.2
CDS-3UTR CAA 90 bp	GAAAGAGGACAGGTCAGCAAGATGGCACGTGGATCAGACATGTTGCAAAGATGGAAGGAACAAGTGATTTaGTCTGGAAGCTCAGTTCTC	+
Preference number: 5 (lower is better) Translates to: ERGQVSKMARGSDMLQRWKEQVI*SGSSVL Trigger: GAGAACTGAGCTTCCAGACAAAATCACTTGTTCCTT...CCATCTTTGCAACATGTCTGATCCACGTGCCATCTTGCTGACCTGTCCTCTTTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000182640.8
CDS CAA 72 bp	GGACTGAGATGGGATGAACAAGGGTACCACTCTCACTaGTCTGGAAGCTCAGTTCTCCAGTCACCAGCAAGG	+
Preference number: 6 (lower is better) Translates to: GLRWDEQGYHSH*SGSSVLQSPAR Trigger: CCTTGCTGGTGACTGGAGAACTGAGCTTCCAGACAAGTGAGAGTGGTACCCTTGTTCATCCCATCTCAGTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000182139.2

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu