Pregenerated sensors for SCGB2B15 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000097972

Ensembl transcript IDs: ENSMUST00000182975.2, ENSMUST00000183050.2

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR CCA 90 bp	ATCAGGAATCCAACTTCAGGAAAGAAAGAGGACAGGTCAGCAAGATaGCACGTGGATCAGACATGTTGCAAAGATGGGTACCCAAAACAC	+
Preference number: 1 (lower is better) Translates to: IRNPTSGKKEDRSAR*HVDQTCCKDGYPKH Trigger: GTGTTTTGGGTACCCATCTTTGCAACATGTCTGATCCACGTGCCATCTTGCTGACCTGTCCTCTTTCTTTCCTGAAGTTGGATTCCTGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000182975.2 ENSMUST00000183050.2
3UTR CCA 90 bp	ATCCAACTTCAGGAAAGAAAGAGGACAGGTCAGCAAGATGGCACGTaGATCAGACATGTTGCAAAGATGGGTACCCAAAACACATTAACA	+
Preference number: 1 (lower is better) Translates to: IQLQERKRTGQQDGT*IRHVAKMGTQNTLT Trigger: TGTTAATGTGTTTTGGGTACCCATCTTTGCAACATGTCTGATCCACGTGCCATCTTGCTGACCTGTCCTCTTTCTTTCCTGAAGTTGGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000182975.2 ENSMUST00000183050.2
3UTR GCA 72 bp	GACAGGTCAGCAAGATGGCACGTGGATCAGACATGTTaGAAAGATGGGTACCCAAAACACATTAACATCTAC	+
Preference number: 3 (lower is better) Translates to: DRSARWHVDQTC*KDGYPKHINIY Trigger: GTAGATGTTAATGTGTTTTGGGTACCCATCTTTGCAACATGTCTGATCCACGTGCCATCTTGCTGACCTGTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183050.2
3UTR CCA 72 bp	TCTACTCTCCTAATAGCCTGGAAATATAGTCTAATATaGATCTTATATTGTCAACTTCATAGTTTGACTGGG	+
Preference number: 3 (lower is better) Translates to: STLLIAWKYSLI*ILYCQLHSLTG Trigger: CCCAGTCAAACTATGAAGTTGACAATATAAGATCCATATTAGACTATATTTCCAGGCTATTAGGAGAGTAGA 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183050.2
3UTR CAA 72 bp	GGCTTCCTCTGCAGTAGCATTGAATGTCTGGAGTTCTaGATACAATCTTTTTCCAGAGAGAACACTTGCATA	+
Preference number: 4 (lower is better) Translates to: GFLCSSIECLEF*IQSFSRENTCI Trigger: TATGCAAGTGTTCTCTCTGGAAAAAGATTGTATCAAGAACTCCAGACATTCAATGCTACTGCAGAGGAAGCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000183050.2
CDS TCA 90 bp	TGTCTCAGGGCCCCACTTAGATATCTCCATGGGACTGAGATGGGATaGACAAGGGTACCACTCTCACTTGTCTGGAAGCTCAGTTCTCCA	+
Preference number: 5 (lower is better) Translates to: CLRAPLRYLHGTEMG*TRVPLSLVWKLSSP Trigger: TGGAGAACTGAGCTTCCAGACAAGTGAGAGTGGTACCCTTGTTCATCCCATCTCAGTCCCATGGAGATATCTAAGTGGGGCCCTGAGACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183050.2
CDS TCA 90 bp	GTTCTTGATACAATCTTTTTCCAGAGAGAACACTTGCATAGACATTaGAAAAAGGAACAAGTGATTCTGTTGTCTGGAAGCTCAGTTCTC	+
Preference number: 5 (lower is better) Translates to: VLDTIFFQREHLHRH*KKEQVILLSGSSVL Trigger: GAGAACTGAGCTTCCAGACAACAGAATCACTTGTTCCTTTTTTCAATGTCTATGCAAGTGTTCTCTCTGGAAAAAGATTGTATCAAGAAC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000182975.2
CDS CAA 90 bp	ATCTCCATGGGACTGAGATGGGATGAACAAGGGTACCACTCTCACTaGTCTGGAAGCTCAGTTCTCCAGTCACCAGCAAGGCCAGCAGAA	+
Preference number: 6 (lower is better) Translates to: ISMGLRWDEQGYHSH*SGSSVLQSPARPAE Trigger: TTCTGCTGGCCTTGCTGGTGACTGGAGAACTGAGCTTCCAGACAAGTGAGAGTGGTACCCTTGTTCATCCCATCTCAGTCCCATGGAGAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183050.2
CDS TCA 72 bp	ACAATCTTTTTCCAGAGAGAACACTTGCATAGACATTaGAAAAAGGAACAAGTGATTCTGTTGTCTGGAAGC	+
Preference number: 6 (lower is better) Translates to: TIFFQREHLHRH*KKEQVILLSGS Trigger: GCTTCCAGACAACAGAATCACTTGTTCCTTTTTTCAATGTCTATGCAAGTGTTCTCTCTGGAAAAAGATTGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000182975.2