Pregenerated sensors for SCGB2A2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000096872Ensembl transcript IDs: ENSMUST00000179814.3
Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | AGATTCACGATGGGTGAGGAAGGTGCTTTTCCTTCTTCACTCTCACACCCAGGCCAATTGTGTGACCATTaGCAGTTTTCTGCAGTTCTG | + |
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Preference number: 2 (lower is better) Translates to: RFTMGEEGAFPSSLSHPGQLCDH*QFSAVL Trigger: CAGAACTGCAGAAAACTGGCAATGGTCACACAATTG...GCCTGGGTGTGAGAGTGAAGAAGGAAAAGCACCTTCCTCACCCATCGTGAATCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179814.3 |
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| 3UTR-3UTR GCA 90 bp | CAGAGTATTCTAATGCCATACAGGGAGCAGGAGAAAATCTATTTCCATGACCCAGCTATGTGCAGTGTGTaGAGAGGTGATGGGAAGAGA | + |
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Preference number: 2 (lower is better) Translates to: QSILMPYREQEKIYFHDPAMCSV*RGDGKR Trigger: TCTCTTCCCATCACCTCTGCACACACTGCACATAGC...TGGGTCATGGAAATAGATTTTCTCCTGCTCCCTGTATGGCATTAGAATACTCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179814.3 |
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| 3UTR-3UTR GCA 90 bp | CCTATTGCAGAGTATTCTAATGCCATACAGGGAGCAGGAGAAAATCTATTTCCAATCAGGAGGGCTATGTaGAGTGTGTGCAGAGGTGAT | + |
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Preference number: 2 (lower is better) Translates to: PIAEYSNAIQGAGENLFPIRRAM*SVCRGD Trigger: ATCACCTCTGCACACACTGCACATAGCCCTCCTGAT...TGGAAATAGATTTTCTCCTGCTCCCTGTATGGCATTAGAATACTCTGCAATAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179814.3 |
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| 3UTR-3UTR TCA 90 bp | CTATTGCAGAGTATTCTAATGCCATACAGGGAGCAGGAGAAAATCTATTTCCATTTTTCTGCAGTTCTGTaGGCCAGAGGTCTTGTGGAG | + |
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Preference number: 2 (lower is better) Translates to: LLQSILMPYREQEKIYFHFSAVL*ARGLVE Trigger: CTCCACAAGACCTCTGGCTCACAGAACTGCAGAAAA...ATGGAAATAGATTTTCTCCTGCTCCCTGTATGGCATTAGAATACTCTGCAATAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000179814.3 |
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| 3UTR-3UTR TCA 90 bp | GTATATACTGTTTTGTTCAAATTCAGGCATCCTCAGTTCCTATTGCAGAGTATTCAGTGTGTGCAGAGGTaGTGGGAAGAGAGCAGATGG | + |
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Preference number: 2 (lower is better) Translates to: VYTVLFKFRHPQFLLQSIQCVQR*WEESRW Trigger: CCATCTGCTCTCTTCCCATCACCTCTGCACACACTG...AATACTCTGCAATAGGAACTGAGGATGCCTGAATTTGAACAAAACAGTATATAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179814.3 |
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| 3UTR-3UTR GCA 90 bp | CTATTGCAGAGTATTCTAATGCCATACAGGGAGCAGGAGAAAATCTATTTCCATCCATTGCCAGTTTTCTaGAGTTCTGTGAGCCAGAGG | + |
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Preference number: 2 (lower is better) Translates to: LLQSILMPYREQEKIYFHPLPVF*SSVSQR Trigger: CCTCTGGCTCACAGAACTGCAGAAAACTGGCAATGG...ATGGAAATAGATTTTCTCCTGCTCCCTGTATGGCATTAGAATACTCTGCAATAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179814.3 |
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| 3UTR-3UTR TCA 90 bp | GTATATACTGTTTTGTTCAAATTCAGGCATCCTCAGTTCCTATTGCAGAGTATTGCGGTATCAATTGTGTaGCCATTGCCAGTTTTCTGC | + |
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Preference number: 2 (lower is better) Translates to: VYTVLFKFRHPQFLLQSIAVSIV*PLPVFC Trigger: GCAGAAAACTGGCAATGGTCACACAATTGATACCGC...AATACTCTGCAATAGGAACTGAGGATGCCTGAATTTGAACAAAACAGTATATAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179814.3 |
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| 3UTR-3UTR TCA 90 bp | GTTCCTATTGCAGAGTATTCTAATGCCATACAGGGAGCAGGAGAAAATCTATTTAGAGAGCAGATGGAGTaGTTTTTCATAGGGGAGATT | + |
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Preference number: 2 (lower is better) Translates to: VPIAEYSNAIQGAGENLFREQME*FFIGEI Trigger: AATCTCCCCTATGAAAAATCACTCCATCTGCTCTCT...AAATAGATTTTCTCCTGCTCCCTGTATGGCATTAGAATACTCTGCAATAGGAAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000179814.3 |
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| 3UTR-3UTR GCA 90 bp | CTATTGCAGAGTATTCTAATGCCATACAGGGAGCAGGAGAAAATCTATTTCCATAGAAAAGTTATGATTTaGGGTATCAATTGTGTGACC | + |
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Preference number: 2 (lower is better) Translates to: LLQSILMPYREQEKIYFHRKVMI*GINCVT Trigger: GGTCACACAATTGATACCGCAAATCATAACTTTTCT...ATGGAAATAGATTTTCTCCTGCTCCCTGTATGGCATTAGAATACTCTGCAATAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179814.3 |
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| 3UTR TCA 72 bp | AATGCCATACAGGGAGCAGGAGAAAATCTATTTCCATaGCCCACTACTCATGTGCACGTAAGCTATCAAGAT | + |
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Preference number: 3 (lower is better) Translates to: NAIQGAGENLFP*PTTHVHVSYQD Trigger: ATCTTGATAGCTTACGTGCACATGAGTAGTGGGTCATGGAAATAGATTTTCTCCTGCTCCCTGTATGGCATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179814.3 |
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| CDS-3UTR TCA 90 bp | CAAGAAAGAAAAGTTATGATTTGCGGTATCAATTGTGTGACCATTGCCAGTTTTATCCTCAGACACAGATaGGCTAATTGTACCGTTGAT | + |
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Preference number: 4 (lower is better) Translates to: QERKVMICGINCVTIASFILRHR*ANCTVD Trigger: ATCAACGGTACAATTAGCTCATCTGTGTCTGAGGAT...AAAACTGGCAATGGTCACACAATTGATACCGCAAATCATAACTTTTCTTTCTTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179814.3 |
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| CDS-3UTR CAA 90 bp | GCATTTCCTAATGGCTATCTCTGTGTGCGTGTGCATGTGCGTGTGTGTGTAGAAATCATCAGGCCAACATaGGACAGAGTGTCCTCCGTC | + |
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Preference number: 5 (lower is better) Translates to: AFPNGYLCVRVHVRVCVEIIRPT*DRVSSV Trigger: GACGGAGGACACTCTGTCCAATGTTGGCCTGATGAT...TTCTACACACACACGCACATGCACACGCACACAGAGATAGCCATTAGGAAATGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179814.3 |
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| CDS CCA 72 bp | ATCATCAGGCCAACATTGGACAGAGTGTCCTCCGTCTaGGATAGAAAACATTGTTTGAATTCTTTCACAGCG | + |
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Preference number: 6 (lower is better) Translates to: IIRPTLDRVSSV*DRKHCLNSFTA Trigger: CGCTGTGAAAGAATTCAAACAATGTTTTCTATCCCAGACGGAGGACACTCTGTCCAATGTTGGCCTGATGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179814.3 |
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| CDS CAA 72 bp | TCGCTGTTAAATATTATTTCCATCATCAGGCCAACATaGGACAGAGTGTCCTCCGTCTGGGATAGAAAACAT | + |
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Preference number: 6 (lower is better) Translates to: SLLNIISIIRPT*DRVSSVWDRKH Trigger: ATGTTTTCTATCCCAGACGGAGGACACTCTGTCCAATGTTGGCCTGATGATGGAAATAATATTTAACAGCGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179814.3 |
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| CDS CAA 90 bp | TGGCACTCTTCGCTGTTAAATATTATTTCCATCATCAGGCCAACATaGGACAGAGTGTCCTCCGTCTGGGATAGAAAACATTGTTTGAAT | + |
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Preference number: 6 (lower is better) Translates to: WHSSLLNIISIIRPT*DRVSSVWDRKHCLN Trigger: ATTCAAACAATGTTTTCTATCCCAGACGGAGGACACTCTGTCCAATGTTGGCCTGATGATGGAAATAATATTTAACAGCGAAGAGTGCCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179814.3 |
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| CDS CAA 90 bp | ATTTCCAAATATTTATCCTCAGACACAGATGAGCTAATTGTACCGTaGATAATATTATCTAGAATACCGCAGCCAGAAGTACCATTGGCA | + |
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Preference number: 6 (lower is better) Translates to: ISKYLSSDTDELIVP*IILSRIPQPEVPLA Trigger: TGCCAATGGTACTTCTGGCTGCGGTATTCTAGATAATATTATCAACGGTACAATTAGCTCATCTGTGTCTGAGGATAAATATTTGGAAAT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179814.3 |
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| CDS CAA 72 bp | TATTTATCCTCAGACACAGATGAGCTAATTGTACCGTaGATAATATTATCTAGAATACCGCAGCCAGAAGTA | + |
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Preference number: 6 (lower is better) Translates to: YLSSDTDELIVP*IILSRIPQPEV Trigger: TACTTCTGGCTGCGGTATTCTAGATAATATTATCAACGGTACAATTAGCTCATCTGTGTCTGAGGATAAATA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179814.3 |
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